Psyllid ID: psy13765

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600------
Protein Sequence
MAQVEFELSNSLSSSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASGEYGVDNINAMVEQAQNDVKPDKKTKKTKHCTYSNQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVNGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDELYCHYKEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIKVMR
Secondary Structure (PSIPRED)
ccccHHHHccccccccccccccccccEEEEEEEEEEEEEcccccccccccccccccEEEcccEEEEEEccccccHHHHHHHHccccccccEEEEEEccccccHHHHHHcccEEcccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHcccccEEEEcccccHHHHHHHccccccccccHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHcHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccHHHHccccccccccccccccccEEEEEEEEEEEEccccccccccEEEEccccccEcccEEEEEEccccccHHHHHHHHHHccccccEEEEEEcccccccccHcHEEEEEEccccccccEEHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHccccEEcccccccccccHHHHEHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHEEEEccccEEEEccHHHHHHHHHHcccccccccccHHHHHHHccccccccccHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHEcccEEEEccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEcccccccHHHHHHHEHcHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MAQVEFELsnslsssesgtsletADRIEIKFKDLtytvstglgfkqepKDVLKNLcgrfpsnqliaimgpsgagkssLLDVLSgyrsngvtgqiltnghsrninafRRVSCyiqqddrlqpllTIENVMSLlgldesqntrssqlsggQKKRLSIALELinnprvmfldepttsnpndqKKRLSIALELinnprvmfldepttgldsqsCSQCIKLLKMISQQGRTIIctihqpsatlFQMFDQVYLlsggqclyqGATDQLVNYLssvnlpcpkyhnpaDFVIELASGEYGVDNINAMVEQAqndvkpdkktkktkhctysnqilqdtsysnqLGVLLSRgllkvkrdstlTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTivypltgqpmeltrftmfnCTSLLVVFIAQSVGYMVGAVFNVVNGTFVGPVLVVPMMmfsgfgvsindipkymrwgseLSYLRYGLEGYVAAIYGLdrktlqcdelychykepkkflqtvsqpsdnfwssSVTLVFILIVMKLIAYFFLSWRIKVMR
Flexible Loop (DISEMBL)
MAQVEFELsnslsssesgtsletadRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGqiltnghsrniNAFRRVSCYIQQDDRLQPLLTIENVMSLLgldesqntrssqlsggqkKRLSIALELInnprvmfldepttsnpndqKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASGEYGVDNINAMVEQAQndvkpdkktkktkhctysnqilqdtsysnqLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVNGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDELYCHYKEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIKVMR
Low Complexity Region (SEG)
MAQVEFelsnslsssesgtsleTADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASGEYGVDNINAMVEQAQNDVKPDkktkktkHCTYSNQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVNGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDELYCHYKEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIKVMR
Disordered region (IsUnstruct)
*************************RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGL********************IALELINNPRVMFL**************LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASGEYGVDNINAMV*****************HCTYSNQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVNGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDELYCHYKEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIKV**
Disordered Region (DISOPRED)
***************************EIKFKDLTYTVSTGLG*KQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLD***************KRLSIALELINNPRVMF*********NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASGEYGVDNINAMVE*****************************YSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVNGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDELYCHYKEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIKV**
Disordered Region (DISEMBL)
*********************ETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDE***************RLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASGEYGVDNINAMVEQAQN*************CTYSNQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVNGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDELYCHYKEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIKVMR
Disordered Region (DISPRO)
*******************SLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASGEYGVDNINAMVEQAQNDVKPDKKTKKTKHCTYSNQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVNGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDELYCHYKEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIKV**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQVEFELSNSLSSSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASGEYGVDNINAMVEQAQNDVKPDKKTKKTKHCTYSNQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVNGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDELYCHYKEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIKVMR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	606	2.2.26 [Sep-21-2011]
Q9H172	646	ATP-binding cassette sub-	yes	N/A	0.976	0.916	0.397	1e-136
Q64343	666	ATP-binding cassette sub-	no	N/A	0.970	0.882	0.415	1e-133
P45844	678	ATP-binding cassette sub-	no	N/A	0.970	0.867	0.407	1e-132
Q11180	598	ABC transporter ATP-bindi	yes	N/A	0.782	0.792	0.291	1e-57
Q9ZU35	725	ABC transporter G family	yes	N/A	0.853	0.713	0.269	2e-57
P10090	687	Protein white OS=Drosophi	no	N/A	0.856	0.755	0.263	2e-55
Q7XA72	672	ABC transporter G family	no	N/A	0.884	0.797	0.293	1e-54
Q8MIB3	656	ATP-binding cassette sub-	no	N/A	0.935	0.864	0.275	2e-54
Q4GZT4	655	ATP-binding cassette sub-	no	N/A	0.968	0.896	0.264	9e-54
Q05360	677	Protein white OS=Lucilia	N/A	N/A	0.795	0.711	0.275	9e-54

>sp|Q9H172|ABCG4_HUMAN ATP-binding cassette sub-family G member 4 OS=Homo sapiens GN=ABCG4 PE=2 SV=2

 Score =  484 bits (1247), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 245/616 (39%), Positives = 376/616 (61%), Gaps = 24/616 (3%)

Query: 7   ELSNSLSSSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEP-KDVLKNLCGRFPSNQLI 65
           ++ N ++ ++  + L     ++I+F +L+Y+V  G  +++   K +LK L G+F   +LI
Sbjct: 39  KVENHITEAQRFSHLPKRSAVDIEFVELSYSVREGPCWRKRGYKTLLKCLSGKFCRRELI 98

Query: 66  AIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTI 125
            IMGPSGAGKS+ +++L+GYR +G+ GQIL NG  R +  FR++SCYI QDD L P LT+
Sbjct: 99  GIMGPSGAGKSTFMNILAGYRESGMKGQILVNGRPRELRTFRKMSCYIMQDDMLLPHLTV 158

Query: 126 ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSN-PNDQKKRLS 184
              M +     S N +   LS  Q+ +  +  E++    +M      T+     Q+KRL+
Sbjct: 159 LEAMMV-----SANLK---LSEKQEVKKELVTEILTALGLMSCSHTRTALLSGGQRKRLA 210

Query: 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQ 244
           IALEL+NNP VMF DEPT+GLDS SC Q + L+K ++Q GRTIICTIHQPSA LF+MFD+
Sbjct: 211 IALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKSLAQGGRTIICTIHQPSAKLFEMFDK 270

Query: 245 VYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASGEYGVDNI-------N 297
           +Y+LS GQC+++G    L+ YL  + L CP YHNPADF+IE+ASGEYG  N        N
Sbjct: 271 LYILSQGQCIFKGVVTNLIPYLKGLGLHCPTYHNPADFIIEVASGEYGDLNPMLFRAVQN 330

Query: 298 AMVEQAQNDVKPDKKTKKTKHCTYSNQILQDTSYS------NQLGVLLSRGLLKVKRDST 351
            +   A+    P+K            ++    S++       Q  +L  R  L + RD+ 
Sbjct: 331 GLCAMAEKKSSPEKNEVPAPCPPCPPEVDPIESHTFATSTLTQFCILFKRTFLSILRDTV 390

Query: 352 LTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEM 411
           LTHLR + ++ + +++G+L+ + G+ AS V  N   LF  ++  +  ++M  +LTFP+EM
Sbjct: 391 LTHLRFMSHVVIGVLIGLLYLHIGDDASKVFNNTGCLFFSMLFLMFAALMPTVLTFPLEM 450

Query: 412 SILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTS 471
           ++ ++EH N WYSLKAYY++  + D+P    C +++ +IVY +TGQP E +RF +F+  +
Sbjct: 451 AVFMREHLNYWYSLKAYYLAKTMADVPFQVVCPVVYCSIVYWMTGQPAETSRFLLFSALA 510

Query: 472 LLVVFIAQSVGYMVGAVFNVVN-GTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSY 530
                +AQS+G ++GA  N +   TFVGPV  +P+++FSGF VS   IP Y++W S LSY
Sbjct: 511 TATALVAQSLGLLIGAASNSLQVATFVGPVTAIPVLLFSGFFVSFKTIPTYLQWSSYLSY 570

Query: 531 LRYGLEGYVAAIYGLDRKTLQCDELYCHYKEPKKFLQTVSQPSDNFWSSSVTLVFILIVM 590
           +RYG EG +  IYG++R  L C E  C ++EP+  L+ +       +   + L    + +
Sbjct: 571 VRYGFEGVILTIYGMERGDLTCLEERCPFREPQSILRALDVEDAKLYMDFLVLGIFFLAL 630

Query: 591 KLIAYFFLSWRIKVMR 606
           +L+AY  L +R+K  R
Sbjct: 631 RLLAYLVLRYRVKSER 646

May be involved in macrophage lipid homeostasis.
Homo sapiens (taxid: 9606)

>sp|Q64343|ABCG1_MOUSE ATP-binding cassette sub-family G member 1 OS=Mus musculus GN=Abcg1 PE=2 SV=1

 Score =  474 bits (1221), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 259/624 (41%), Positives = 379/624 (60%), Gaps = 36/624 (5%)

Query: 7   ELSNSLSSSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEP-KDVLKNLCGRFPSNQLI 65
           ++ N+ + ++  +SL     + I+FKDL+Y+V  G  +K++  K +LK + G+F S +L+
Sbjct: 55  KVDNNFTEAQRFSSLPRRAAVNIEFKDLSYSVPEGPWWKKKGYKTLLKGISGKFNSGELV 114

Query: 66  AIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTI 125
           AIMGPSGAGKS+L+++L+GYR  G+ G +L NG  R++  FR+VSCYI QDD L P LT+
Sbjct: 115 AIMGPSGAGKSTLMNILAGYRETGMKGAVLINGMPRDLRCFRKVSCYIMQDDMLLPHLTV 174

Query: 126 ENVMSL---LGLDESQNTRSSQLSGGQKKRLSIALELI--NNPRVMFLDEPTTSNPNDQK 180
           +  M +   L L E    R   +     K +  AL L+   N R       T S    Q+
Sbjct: 175 QEAMMVSAHLKLQEKDEGRREMV-----KEILTALGLLPCANTR-------TGSLSGGQR 222

Query: 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQ 240
           KRL+IALEL+NNP VMF DEPT+GLDS SC Q + L+K ++Q GR+I+CTIHQPSA LF+
Sbjct: 223 KRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIVCTIHQPSAKLFE 282

Query: 241 MFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASGEYGVDN---IN 297
           +FDQ+Y+LS GQC+Y+G    LV YL  + L CP YHNPADFV+E+ASGEYG  N   + 
Sbjct: 283 LFDQLYVLSQGQCVYRGKVSNLVPYLRDLGLNCPTYHNPADFVMEVASGEYGDQNSRLVR 342

Query: 298 AMVE-----------QAQNDVKPDKKTKKTKHCTYSNQILQDTSYS--NQLGVLLSRGLL 344
           A+ E               DV P    +  +  + S +     S S   Q  +L  R  L
Sbjct: 343 AVREGMCDADYKRDLGGDTDVNPFLWHRPAEEDSASMEGCHSFSASCLTQFCILFKRTFL 402

Query: 345 KVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNI 404
            + RDS LTHLRI  +I + L++G+L+   G  A  VL N   LF  ++  +  ++M  +
Sbjct: 403 SIMRDSVLTHLRITSHIGIGLLIGLLYLGIGNEAKKVLSNSGFLFFSMLFLMFAALMPTV 462

Query: 405 LTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRF 464
           LTFP+EMS+ ++EH N WYSLKAYY++  + D+P      + + +IVY +T QP +  RF
Sbjct: 463 LTFPLEMSVFLREHLNYWYSLKAYYLAKTMADVPFQIMFPVAYCSIVYWMTSQPSDAVRF 522

Query: 465 TMFNCTSLLVVFIAQSVGYMVGAVFNVVN-GTFVGPVLVVPMMMFSGFGVSINDIPKYMR 523
            +F     +   +AQS+G ++GA    +   TFVGPV  +P+++FSGF VS + IP Y++
Sbjct: 523 VLFAALGTMTSLVAQSLGLLIGAASTSLQVATFVGPVTAIPVLLFSGFFVSFDTIPAYLQ 582

Query: 524 WGSELSYLRYGLEGYVAAIYGLDRKTLQCD-ELYCHYKEPKKFLQTVSQPSDNFWSSSVT 582
           W S +SY+RYG EG + +IYGLDR+ L CD    CH+++ +  L+ +   +   +   + 
Sbjct: 583 WMSYISYVRYGFEGVILSIYGLDREDLHCDIAETCHFQKSEAILRELDVENAKLYLDFIV 642

Query: 583 LVFILIVMKLIAYFFLSWRIKVMR 606
           L    I ++LIAYF L ++I+  R
Sbjct: 643 LGIFFISLRLIAYFVLRYKIRAER 666

Transporter involved in macrophage lipid homeostasis. Is an active component of the macrophage lipid export complex. Could also be involved in intracellular lipid transport processes. The role in cellular lipid homeostasis may not be limited to macrophages.

Mus musculus (taxid: 10090)

>sp|P45844|ABCG1_HUMAN ATP-binding cassette sub-family G member 1 OS=Homo sapiens GN=ABCG1 PE=2 SV=3

 Score =  471 bits (1212), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 259/636 (40%), Positives = 384/636 (60%), Gaps = 48/636 (7%)

Query: 7   ELSNSLSSSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEP-KDVLKNLCGRFPSNQLI 65
           ++ N+L+ ++  +SL     + I+F+DL+Y+V  G  ++++  K +LK + G+F S +L+
Sbjct: 55  KVDNNLTEAQRFSSLPRRAAVNIEFRDLSYSVPEGPWWRKKGYKTLLKGISGKFNSGELV 114

Query: 66  AIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTI 125
           AIMGPSGAGKS+L+++L+GYR  G+ G +L NG  R++  FR+VSCYI QDD L P LT+
Sbjct: 115 AIMGPSGAGKSTLMNILAGYRETGMKGAVLINGLPRDLRCFRKVSCYIMQDDMLLPHLTV 174

Query: 126 ENVMSL---LGLDESQNTRSSQLSGGQKKRLSIALELIN--NPRVMFLDEPTTSNPNDQK 180
           +  M +   L L E    R   +     K +  AL L++  N R       T S    Q+
Sbjct: 175 QEAMMVSAHLKLQEKDEGRREMV-----KEILTALGLLSCANTR-------TGSLSGGQR 222

Query: 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQ 240
           KRL+IALEL+NNP VMF DEPT+GLDS SC Q + L+K ++Q GR+IICTIHQPSA LF+
Sbjct: 223 KRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIICTIHQPSAKLFE 282

Query: 241 MFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASGEYGVDN---IN 297
           +FDQ+Y+LS GQC+Y+G    LV YL  + L CP YHNPADFV+E+ASGEYG  N   + 
Sbjct: 283 LFDQLYVLSQGQCVYRGKVCNLVPYLRDLGLNCPTYHNPADFVMEVASGEYGDQNSRLVR 342

Query: 298 AMVE-----------------------QAQNDVKPDKKTKKTKHCTYSNQILQDTSYS-- 332
           A+ E                       +   +VK  K+ K  +  + S +     S S  
Sbjct: 343 AVREGMCDSDHKRDLGGDAEVNPFLWHRPSEEVKQTKRLKGLRKDSSSMEGCHSFSASCL 402

Query: 333 NQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSIL 392
            Q  +L  R  L + RDS LTHLRI  +I + L++G+L+   G  A  VL N   LF  +
Sbjct: 403 TQFCILFKRTFLSIMRDSVLTHLRITSHIGIGLLIGLLYLGIGNEAKKVLSNSGFLFFSM 462

Query: 393 IHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVY 452
           +  +  ++M  +LTFP+EM + ++EH N WYSLKAYY++  + D+P      + + +IVY
Sbjct: 463 LFLMFAALMPTVLTFPLEMGVFLREHLNYWYSLKAYYLAKTMADVPFQIMFPVAYCSIVY 522

Query: 453 PLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVN-GTFVGPVLVVPMMMFSGF 511
            +T QP +  RF +F     +   +AQS+G ++GA    +   TFVGPV  +P+++FSGF
Sbjct: 523 WMTSQPSDAVRFVLFAALGTMTSLVAQSLGLLIGAASTSLQVATFVGPVTAIPVLLFSGF 582

Query: 512 GVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCD-ELYCHYKEPKKFLQTVS 570
            VS + IP Y++W S +SY+RYG EG + +IYGLDR+ L CD +  CH+++ +  L+ + 
Sbjct: 583 FVSFDTIPTYLQWMSYISYVRYGFEGVILSIYGLDREDLHCDIDETCHFQKSEAILRELD 642

Query: 571 QPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIKVMR 606
             +   +   + L    I ++LIAYF L ++I+  R
Sbjct: 643 VENAKLYLDFIVLGIFFISLRLIAYFVLRYKIRAER 678

Transporter involved in macrophage lipid homeostasis. Is an active component of the macrophage lipid export complex. Could also be involved in intracellular lipid transport processes. The role in cellular lipid homeostasis may not be limited to macrophages.

Homo sapiens (taxid: 9606)

>sp|Q11180|WHT1_CAEEL ABC transporter ATP-binding protein/permease wht-1 OS=Caenorhabditis elegans GN=wht-1 PE=2 SV=2

 Score =  225 bits (573), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 157/539 (29%), Positives = 259/539 (48%), Gaps = 65/539 (12%)

Query: 45  KQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG--VTGQILTNGHSRN 102
           K+  K++L N+ G   S +L+AI+G SGAGK++L++VL+        V G IL +G   N
Sbjct: 3   KRRVKEILHNVSGMAESGKLLAILGSSGAGKTTLMNVLTSRNLTNLDVQGSILIDGRRAN 62

Query: 103 INAFRRVSCYIQQDDRLQPLLTIENVMSLLGL---------DESQNTRSSQL--SGGQKK 151
               R +S ++QQ D     +T    +  +           D  +  R  Q+    G KK
Sbjct: 63  KWKIREMSAFVQQHDMFVGTMTAREHLQFMARLRMGDQYYSDHERQLRVEQVLTQMGLKK 122

Query: 152 RLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCS 211
                + + N  + +   E         KKRLS A E++  P+++F DEPT+GLD+    
Sbjct: 123 CADTVIGIPNQLKGLSCGE---------KKRLSFASEILTCPKILFCDEPTSGLDAFMAG 173

Query: 212 QCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNL 271
             ++ L+ ++  G T+I TIHQPS+ ++ +F+ V L++ G+ +Y G  DQ V        
Sbjct: 174 HVVQALRSLADNGMTVIITIHQPSSHVYSLFNNVCLMACGRVIYLGPGDQAVPLFEKCGY 233

Query: 272 PCPKYHNPADFVI---------------------------ELASGEYGVDNINAMVEQAQ 304
           PCP Y+NPAD +I                           +L      + N N +  +A 
Sbjct: 234 PCPAYYNPADHLIRTLAVIDSDRATSMKTISKIRQGFLSTDLGQSVLAIGNANKL--RAA 291

Query: 305 NDVKPDKKTKKTKHCTYSNQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVA 364
           + V     ++KTK  T+ NQ   + S+  Q   L  R  L V RD  L  +R++  +  A
Sbjct: 292 SFVTGSDTSEKTK--TFFNQDY-NASFWTQFLALFWRSWLTVIRDPNLLSVRLLQILITA 348

Query: 365 LMLG-VLFQNSGEYASSVLINYNLLFSILIHHVMT-SMMLNILTFPM---EMSILIKEHF 419
            + G V FQ     A+ + IN      I+ +H+   + ML     P+   E+ I+++E+ 
Sbjct: 349 FITGIVFFQTPVTPATIISIN-----GIMFNHIRNMNFMLQFPNVPVITAELPIVLRENA 403

Query: 420 NRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQ 479
           N  Y   AY+++ N+ ++P      +L+ TIVY ++G       +   +  ++L+  +A 
Sbjct: 404 NGVYRTSAYFLAKNIAELPQYIILPILYNTIVYWMSGLYPNFWNYCFASLVTILITNVAI 463

Query: 480 SVGYMVGAVF-NVVNGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEG 537
           S+ Y V  +F N      + P+ VVP+M F GF ++ + IP Y +W S LSY +YG E 
Sbjct: 464 SISYAVATIFANTDVAMTILPIFVVPIMAFGGFFITFDAIPSYFKWLSSLSYFKYGYEA 522

Caenorhabditis elegans (taxid: 6239)

>sp|Q9ZU35|AB7G_ARATH ABC transporter G family member 7 OS=Arabidopsis thaliana GN=ABCG7 PE=1 SV=1

 Score =  223 bits (569), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 153/567 (26%), Positives = 276/567 (48%), Gaps = 50/567 (8%)

Query: 5   EFELSNSLSSSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQL 64
           E E  +  + +E G   ++   + I+++++T ++S      +  + +LKN+ G     +L
Sbjct: 47  EDEAEDDYAETEDGGG-DSIRPVTIRWRNITCSLSDK--SSKSVRFLLKNVSGEAKPGRL 103

Query: 65  IAIMGPSGAGKSSLLDVLSGYRSNG----VTGQILTNGHSRNINAFRRVSCYIQQDDRLQ 120
           +AIMGPSG+GK++LL+VL+G  S      ++G +  NG   +  A++    +++Q+D   
Sbjct: 104 LAIMGPSGSGKTTLLNVLAGQLSLSPRLHLSGLLEVNGKPSSSKAYKL--AFVRQEDLFF 161

Query: 121 PLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQK 180
             LT+   +S     +     S++        L + L L++       D         +K
Sbjct: 162 SQLTVRETLSFAAELQLPEISSAEERDEYVNNLLLKLGLVSCADSCVGDAKVRGISGGEK 221

Query: 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQ 240
           KRLS+A ELI +P V+F DEPTTGLD+    + ++ L+ ++Q G T+IC+IHQP  +++ 
Sbjct: 222 KRLSLACELIASPSVIFADEPTTGLDAFQAEKVMETLQKLAQDGHTVICSIHQPRGSVYA 281

Query: 241 MFDQVYLLSGGQCLYQG-ATDQLVNYLSSVNLPCPKYHNPADFVIELASGEYG------- 292
            FD + LL+ G  +Y G A  + + Y  +    CP++ NPA+F+ +L S +Y        
Sbjct: 282 KFDDIVLLTEGTLVYAGPAGKEPLTYFGNFGFLCPEHVNPAEFLADLISVDYSSSETVYS 341

Query: 293 --------VDNIN------------AMVEQAQNDVKPDKKTKKTKHCTYSNQILQDT-SY 331
                   VD  +            +M E+ +N ++P +K            I++ T  +
Sbjct: 342 SQKRVHALVDAFSQRSSSVLYATPLSMKEETKNGMRPRRKA-----------IVERTDGW 390

Query: 332 SNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSI 391
             Q  +LL R  ++  RD     +R  +++  A++ G +F   G+  +S+     LL   
Sbjct: 391 WRQFFLLLKRAWMQASRDGPTNKVRARMSVASAVIFGSVFWRMGKSQTSIQDRMGLLQVA 450

Query: 392 LIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIV 451
            I+  M ++   +  FP E +I+ +E     YSL  Y +S  + +IP+     L+F  ++
Sbjct: 451 AINTAMAALTKTVGVFPKERAIVDRERSKGSYSLGPYLLSKTIAEIPIGAAFPLMFGAVL 510

Query: 452 YPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVNGTF-VGPVLVVPMMMFSG 510
           YP+      L+RF  F     +  F A ++G  VGA+         VGP L+   ++F G
Sbjct: 511 YPMARLNPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPSTEAAMAVGPSLMTVFIVFGG 570

Query: 511 FGVSINDIPKYMRWGSELSYLRYGLEG 537
           + V+ ++ P   RW    S +R+  +G
Sbjct: 571 YYVNADNTPIIFRWIPRASLIRWAFQG 597

Arabidopsis thaliana (taxid: 3702)

>sp|P10090|WHITE_DROME Protein white OS=Drosophila melanogaster GN=w PE=2 SV=2

 Score =  217 bits (553), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 161/611 (26%), Positives = 285/611 (46%), Gaps = 92/611 (15%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGV----TGQILTNGHSRNIN 104
           K +LKN+CG     +L+A+MG SGAGK++LL+ L+     G+    +G  L NG   +  
Sbjct: 110 KHLLKNVCGVAYPGELLAVMGSSGAGKTTLLNALAFRSPQGIQVSPSGMRLLNGQPVDAK 169

Query: 105 AFRRVSCYIQQDD------------------RLQPLLT-------IENVMSLLGLDESQN 139
             +    Y+QQDD                  R+   LT       ++ V+  L L + Q+
Sbjct: 170 EMQARCAYVQQDDLFIGSLTAREHLIFQAMVRMPRHLTYRQRVARVDQVIQELSLSKCQH 229

Query: 140 T------RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNP 193
           T      R   LSGG++KRL+ A E + +P ++  D                        
Sbjct: 230 TIIGVPGRVKGLSGGERKRLAFASEALTDPPLLICD------------------------ 265

Query: 194 RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC 253
                 EPT+GLDS +    +++LK +SQ+G+T+I TIHQPS+ LF++FD++ L++ G+ 
Sbjct: 266 ------EPTSGLDSFTAHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKILLMAEGRV 319

Query: 254 LYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASGEYG-----VDNI-----NAMVEQA 303
            + G   + V++ S V   CP  +NPADF +++ +   G      D I     N  + + 
Sbjct: 320 AFLGTPSEAVDFFSYVGAQCPTNYNPADFYVQVLAVVPGREIESRDRIAKICDNFAISKV 379

Query: 304 QNDVKPDKKTKKTKHCTY--SNQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNI 361
             D++    TK  +       N      ++  Q   +L R  L V ++  L  +R+I   
Sbjct: 380 ARDMEQLLATKNLEKPLEQPENGYTYKATWFMQFRAVLWRSWLSVLKEPLLVKVRLIQTT 439

Query: 362 FVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNR 421
            VA+++G++F         V+     +F  L +    ++   I  F  E+ + ++E  +R
Sbjct: 440 MVAILIGLIFLGQQLTQVGVMNINGAIFLFLTNMTFQNVFATINVFTSELPVFMREARSR 499

Query: 422 WYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSL--LVVFIAQ 479
            Y    Y++   + ++P+     L+FT I YP+ G    +  F  FNC +L  LV  ++ 
Sbjct: 500 LYRCDTYFLGKTIAELPLFLTVPLVFTAIAYPMIGLRAGVLHF--FNCLALVTLVANVST 557

Query: 480 SVGYMVGAVFNVVNGTF-VGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGY 538
           S GY++    +  +    VGP +++P ++F GF ++   +P Y++W S LS+ RY  EG 
Sbjct: 558 SFGYLISCASSSTSMALSVGPPVIIPFLLFGGFFLNSGSVPVYLKWLSYLSWFRYANEGL 617

Query: 539 VAAIYGLDRKTLQCDELYCHYKEP------KKFLQTVSQPSDNFWSSSVTLVFILIVMKL 592
           +   +      ++  E+ C           K  L+T++  + +     V L  +++  ++
Sbjct: 618 LINQWA----DVEPGEISCTSSNTTCPSSGKVILETLNFSAADLPLDYVGLAILIVSFRV 673

Query: 593 IAYFFLSWRIK 603
           +AY  L  R +
Sbjct: 674 LAYLALRLRAR 684

Part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. White dimerize with brown for the transport of guanine. Scarlet and white complex transports a metabolic intermediate (such as 3-hydroxy kynurenine) from the cytoplasm into the pigment granules.

Drosophila melanogaster (taxid: 7227)

>sp|Q7XA72|AB21G_ARATH ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=2

 Score =  214 bits (545), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 174/593 (29%), Positives = 293/593 (49%), Gaps = 57/593 (9%)

Query: 11  SLSSSESGTSLETADRIEIKFKDLTYTVS--TGLGF----KQEPKD---VLKNLCGRFPS 61
           S  S +S    ++   I +KF++LTY++   TG G      QEPK    VLK + G    
Sbjct: 50  SHQSRQSSVLRQSLRPIILKFEELTYSIKSQTGKGSYWFGSQEPKPNRLVLKCVSGIVKP 109

Query: 62  NQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQP 121
            +L+A++GPSG+GK++L+  L+G     ++G +  NG     ++ +R + ++ QDD L P
Sbjct: 110 GELLAMLGPSGSGKTTLVTALAGRLQGKLSGTVSYNGEPFT-SSVKRKTGFVTQDDVLYP 168

Query: 122 LLTIENVMSLLGLDE--SQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQ 179
            LT+   ++   L     + TR  +L   Q + +   L L      +            +
Sbjct: 169 HLTVMETLTYTALLRLPKELTRKEKLE--QVEMVVSDLGLTRCCNSVIGGGLIRGISGGE 226

Query: 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLF 239
           +KR+SI  E++ NP ++ LDEPT+GLDS + ++ +  L+ +++ GRT++ TIHQPS+ L+
Sbjct: 227 RKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAARIVATLRSLARGGRTVVTTIHQPSSRLY 286

Query: 240 QMFDQVYLLSGGQCLYQGATDQLVNYLSSVNL-PCPKYHNPADFVIELASG------EYG 292
           +MFD+V +LS G  +Y G + +++ Y  S+   P   + NPADFV++LA+G      +Y 
Sbjct: 287 RMFDKVLVLSEGCPIYSGDSGRVMEYFGSIGYQPGSSFVNPADFVLDLANGITSDTKQYD 346

Query: 293 VDNINAMVE--QAQNDVK------------------------PDKKTKKTKHCTYSNQIL 326
               N  ++  + QN VK                         D+   + +    +N+  
Sbjct: 347 QIETNGRLDRLEEQNSVKQSLISSYKKNLYPPLKEEVSRTFPQDQTNARLRKKAITNR-- 404

Query: 327 QDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYN 386
             TS+  Q  VLL RG LK +   + + LRI + + V+L+ G+L+ +S    + +     
Sbjct: 405 WPTSWWMQFSVLLKRG-LKERSHESFSGLRIFMVMSVSLLSGLLWWHS--RVAHLQDQVG 461

Query: 387 LLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLL 446
           LLF   I      +   I TFP E  +LIKE  +  Y L +YY++  + D+P+      +
Sbjct: 462 LLFFFSIFWGFFPLFNAIFTFPQERPMLIKERSSGIYRLSSYYIARTVGDLPMELILPTI 521

Query: 447 FTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVF-NVVNGTFVGPVLVVPM 505
           F TI Y + G    LT F M     L  V +AQ VG  +GA+  +      +  VL++  
Sbjct: 522 FVTITYWMGGLKPSLTTFIMTLMIVLYNVLVAQGVGLALGAILMDAKKAATLSSVLMLVF 581

Query: 506 MMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDE-LYC 557
           ++  G+   I  IP ++ W   +S+  Y  +  V   Y  D +  +C   L+C
Sbjct: 582 LLAGGY--YIQHIPGFIAWLKYVSFSHYCYKLLVGVQYTWD-EVYECGSGLHC 631

Arabidopsis thaliana (taxid: 3702)

>sp|Q8MIB3|ABCG2_PIG ATP-binding cassette sub-family G member 2 OS=Sus scrofa GN=ABCG2 PE=2 SV=1

 Score =  214 bits (545), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 179/650 (27%), Positives = 307/650 (47%), Gaps = 83/650 (12%)

Query: 9   SNSLSSSESGTSLETADRIEIKFKDLTYTVSTGLGF----KQEPKDVLKNLCGRFPSNQL 64
           +N L  S S     +A    + F D+ Y V    GF    K   K++L N+ G      L
Sbjct: 17  TNGLPGSSSNELKTSAGGAVLSFHDICYRVKVKSGFLFCRKTVEKEILTNINGIMKPG-L 75

Query: 65  IAIMGPSGAGKSSLLDVLSGYRS-NGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLL 123
            AI+GP+G GKSSLLDVL+  +  +G++G +L NG  R  N F+  S Y+ QDD +   L
Sbjct: 76  NAILGPTGGGKSSLLDVLAARKDPHGLSGDVLINGAPRPAN-FKCNSGYVVQDDVVMGTL 134

Query: 124 TI-ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQ--- 179
           T+ EN    L    +    ++  +  + +R+++ ++ +       LD+   S    Q   
Sbjct: 135 TVREN----LQFSAALRLPTTMTNHEKNERINMVIQELG------LDKVADSKVGTQFIR 184

Query: 180 ------KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQ 233
                 +KR SIA+ELI +P ++FLDEPTTGLDS + +  + LLK +S+QGRTII +IHQ
Sbjct: 185 GVSGGERKRTSIAMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQ 244

Query: 234 PSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASGEYGV 293
           P  ++F++FD + LL+ G+ ++ G   + + Y +S+   C  Y+NPADF +++ +G    
Sbjct: 245 PRYSIFKLFDSLTLLASGRLMFHGPAREALGYFASIGYNCEPYNNPADFFLDVING---- 300

Query: 294 DNINAMVEQAQND-------VKPDKKT-----------------------------KKTK 317
           D+   ++ +A  D         P+K T                             +K K
Sbjct: 301 DSSAVVLSRADRDEGAQEPEEPPEKDTPLIDKLAAFYTNSSFFKDTKVELDQFSGGRKKK 360

Query: 318 HCTYSNQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEY 377
             +   ++   TS+ +QL  +  R    +  +   +  +IIV I + L++G +F +    
Sbjct: 361 KSSVYKEVTYTTSFCHQLRWISRRSFKNLLGNPQASVAQIIVTIILGLVIGAIFYDLKND 420

Query: 378 ASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLD- 436
            S +     +LF +  +   +S+   +    +E  + I E+ + +Y + +Y+    L D 
Sbjct: 421 PSGIQNRAGVLFFLTTNQCFSSVSA-VELLVVEKKLFIHEYISGYYRVSSYFFGKLLSDL 479

Query: 437 IPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVN-GT 495
           +P+     ++FT I Y L G    +  F +   T ++V + A S+   + A  +VV+  T
Sbjct: 480 LPMRMLPSIIFTCITYFLLGLKPAVGSFFIMMFTLMMVAYSASSMALAIAAGQSVVSVAT 539

Query: 496 FVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIY-------GLDRK 548
            +  +  V MM+FSG  V++  +  ++ W    S  RYG        +       GL+  
Sbjct: 540 LLMTISFVFMMIFSGLLVNLKTVVPWLSWLQYFSIPRYGFSALQYNEFLGQNFCPGLNVT 599

Query: 549 TLQ-CDELYCHYKEPKKFL--QTVSQPSDNFWSSSVTLVFILIVMKLIAY 595
           T   C    C   E   +L  Q +S  +   W + V L  ++++   IAY
Sbjct: 600 TNNTCSFAICTGAE---YLENQGISLSAWGLWQNHVALACMMVIFLTIAY 646

Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux.

Sus scrofa (taxid: 9823)

>sp|Q4GZT4|ABCG2_BOVIN ATP-binding cassette sub-family G member 2 OS=Bos taurus GN=ABCG2 PE=2 SV=2

 Score =  212 bits (539), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 174/659 (26%), Positives = 312/659 (47%), Gaps = 72/659 (10%)

Query: 1   MAQVEFELSNSLSSSESGTSLETADRIE-------IKFKDLTYTVSTGLGF----KQEPK 49
           M+   +E+S  +S   +G    T+  ++       + F ++ Y V    GF    K   K
Sbjct: 1   MSSNSYEVSIPMSKKLNGIPETTSKDLQTLTEGAVLSFHNICYRVKVKTGFLLCRKTIEK 60

Query: 50  DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS-NGVTGQILTNGHSRNINAFRR 108
           ++L N+ G      L AI+GP+G GKSSLLD+L+  +  +G++G +L NG  R  N F+ 
Sbjct: 61  EILANINGVMKPG-LNAILGPTGGGKSSLLDILAARKDPHGLSGDVLINGAPRPAN-FKC 118

Query: 109 VSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL--SIALELINNPRVM 166
            S Y+ QDD +   LT+   +          T +S     +  ++   + L+ + + +V 
Sbjct: 119 NSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTSYEKNERINKVIQELGLDKVADSKVG 178

Query: 167 FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRT 226
              +        ++KR SIA+ELI +P ++FLDEPTTGLDS + +  + LLK +S+QGRT
Sbjct: 179 --TQFIRGVSGGERKRTSIAMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRT 236

Query: 227 IICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIEL 286
           II +IHQP  ++F++FD + LL+ G+ ++ G   + + Y  ++   C  Y+NPADF +++
Sbjct: 237 IIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALGYFGAIGFRCEPYNNPADFFLDI 296

Query: 287 ASGEYG--VDNINAMVEQAQNDVKPDKK------------------------------TK 314
            +G+    V N   + ++A    +P KK                               +
Sbjct: 297 INGDSSAVVLNREDIGDEANETEEPSKKDTPLIEKLAEFYVNSSFFKETKVELDKFSGDQ 356

Query: 315 KTKHCTYSNQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNS 374
           + K      ++   TS+ +QL  +  R    +  +   +  ++IV +F+ L++G +F + 
Sbjct: 357 RRKKLPSYKEVTYATSFCHQLKWISRRSFKNLLGNPQASIAQLIVTVFLGLVIGAIFYDL 416

Query: 375 GEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNL 434
               + +     +LF +  +   +S+   +    +E  + I E+ + +Y + +Y+    L
Sbjct: 417 KNDPAGIQNRAGVLFFLTTNQCFSSVS-AVELLVVEKKLFIHEYISGYYRVSSYFFGKLL 475

Query: 435 LD-IPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVN 493
            D +P+     ++FT I Y L G   ++  F +   T ++V + A S+   + A  +VV+
Sbjct: 476 SDLLPMRMLPSIIFTCITYFLLGLKPKVEAFFIMMLTLMMVAYSASSMALAIAAGQSVVS 535

Query: 494 -GTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIY--------- 543
             T +  +  V MM+FSG  V++  +  ++ W   LS  RY   GY A  +         
Sbjct: 536 IATLLMTISFVFMMIFSGLLVNLKTVVPWLSWLQYLSIPRY---GYAALQHNEFLGQNFC 592

Query: 544 -GLDRKTLQ-CDELYCHYKEPKKFL--QTVSQPSDNFWSSSVTLVFILIVMKLIAYFFL 598
            GL+  T   C    C  +E   FL  Q +       W + V L  ++++   IAY  L
Sbjct: 593 PGLNVTTNNTCSYAICTGEE---FLTNQGIDISPWGLWKNHVALACMIVIFLTIAYLKL 648

Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux.

Bos taurus (taxid: 9913)

>sp|Q05360|WHITE_LUCCU Protein white OS=Lucilia cuprina GN=W PE=2 SV=2

 Score =  211 bits (538), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 142/516 (27%), Positives = 248/516 (48%), Gaps = 34/516 (6%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGV----TGQILTNGHSRNIN 104
           K ++KN+CG     +L+A+MG SGAGK++LL+ L+   + GV    +   + NGH  +  
Sbjct: 99  KHLIKNVCGVAYPGELLAVMGSSGAGKTTLLNALAFRSARGVQISPSSVRMLNGHPVDAK 158

Query: 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPR 164
             +    Y+QQDD     LT    +        Q T     +  QK++L    ++I +  
Sbjct: 159 EMQARCAYVQQDDLFIGSLTAREHLIF------QATVRMPRTMTQKQKLQRVDQVIQDLS 212

Query: 165 VMFLDEPTTSNPN-------DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL 217
           ++         P         ++KRL+ A E + +P ++  DEPT+GLDS   +  +++L
Sbjct: 213 LIKCQNTIIGVPGRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAASVVQVL 272

Query: 218 KMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYH 277
           K +SQ+G+T+I TIHQPS+ LF++FD++ L++ G+  + G   + V++ S +   CP  +
Sbjct: 273 KKLSQRGKTVILTIHQPSSELFELFDKILLMAEGRVAFLGTPVEAVDFFSFIGAQCPTNY 332

Query: 278 NPADFVIELASGEYG-----VDNINAMV----------EQAQNDVKPDKKTKKTKHCTYS 322
           NPADF +++ +   G      D I+ +           E  QN  K   KT   +    +
Sbjct: 333 NPADFYVQVLAVVPGREIESRDRISKICDNFAVGKVSREMEQNFQKIAAKTDGLQKDDET 392

Query: 323 NQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVL 382
             IL   S+  Q   ++ R  +   ++  L  +R+I    VA+++G++F N       V+
Sbjct: 393 T-ILYKASWFTQFRAIMWRSWISTLKEPLLVKVRLIQTTMVAVLIGLIFLNQPMTQVGVM 451

Query: 383 INYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGF 442
                +F  L +    ++   I  F  E+ + ++E  +R Y    Y++   L ++P+   
Sbjct: 452 NINGAIFLFLTNMTFQNVFAVINVFTSELPVFMRETRSRLYRCDTYFLGKTLAELPLFLV 511

Query: 443 CCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVNGTF-VGPVL 501
              LF  I YP+ G    +T F        LV  ++ S GY++       +    VGP L
Sbjct: 512 VPFLFIAIAYPMIGLRPGITHFLSALALVTLVANVSTSFGYLISCASTSTSMALSVGPPL 571

Query: 502 VVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEG 537
            +P ++F G  ++   +P Y +W S  S+ RY  EG
Sbjct: 572 TIPFLLFGGVFLNSGSVPVYFKWLSYFSWFRYANEG 607

May be part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color.

Lucilia cuprina (taxid: 7375)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	606
91081777	631	PREDICTED: similar to abc transporter [T	0.929	0.892	0.542	0.0
270006281	633	hypothetical protein TcasGA2_TC008454 [T	0.929	0.889	0.537	0.0
322788385	695	hypothetical protein SINV_03712 [Solenop	0.924	0.805	0.524	0.0
194761598	693	GF14147 [Drosophila ananassae] gi|190616	0.957	0.836	0.537	0.0
157119342	676	abc transporter [Aedes aegypti] gi|10887	0.915	0.821	0.527	0.0
194859434	691	GG23992 [Drosophila erecta] gi|190661242	0.948	0.832	0.531	0.0
158288372	657	AGAP009463-PA [Anopheles gambiae str. PE	0.933	0.861	0.520	0.0
332021673	636	ATP-binding cassette sub-family G member	0.937	0.893	0.508	0.0
125985129	696	GA19180 [Drosophila pseudoobscura pseudo	0.957	0.833	0.522	0.0
15292537	689	SD06390p [Drosophila melanogaster]	0.948	0.834	0.531	0.0

>gi|91081777|ref|XP_973493.1| PREDICTED: similar to abc transporter [Tribolium castaneum]

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/634 (54%), Positives = 433/634 (68%), Gaps = 71/634 (11%)

Query: 12  LSSSESGT-SLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGP 70
           +   ESGT S      I+++F+D+ YT S  LGF++  K++L  + G+FP  QLIAIMGP
Sbjct: 30  MQEEESGTFSRPPQQTIDLQFEDIKYTAS--LGFRKGTKEILHGVNGKFPPGQLIAIMGP 87

Query: 71  SGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLT------ 124
           SGAGKS+LLD+LSGYR  GV+G +  NG  RN+ AFR+ SCYIQQDDRLQPLLT      
Sbjct: 88  SGAGKSTLLDILSGYRIRGVSGTVYANGFPRNLKAFRKSSCYIQQDDRLQPLLTTAENMQ 147

Query: 125 -------------------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV 165
                              IE ++  LGL ++ NT+++ LSGGQKKR             
Sbjct: 148 IAADLKLGPEVSQREKTETIEEILKWLGLSKTMNTKAAGLSGGQKKR------------- 194

Query: 166 MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGR 225
                            LSIALELINNP VMFLDEPTTGLDS SCSQCIKLLK +++QGR
Sbjct: 195 -----------------LSIALELINNPTVMFLDEPTTGLDSSSCSQCIKLLKDLARQGR 237

Query: 226 TIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIE 285
           TI+CTIHQPSA+LFQ+FDQVY+L+ G+CLYQG+T  LV +L+ V  PCP+YHNPADFVIE
Sbjct: 238 TIVCTIHQPSASLFQLFDQVYVLAAGRCLYQGSTTNLVPFLNDVKYPCPQYHNPADFVIE 297

Query: 286 LASGEYGVDNINAMVEQAQN---------DVKPDKKT---KKTKHCTYSNQILQDTSYSN 333
           LA  EYG + I+ MV   +N         +V P  K       K  +     LQ TS  N
Sbjct: 298 LACEEYGPEIIDTMVATTENGSSVAYFDKEVVPTLKRPIGNSAKTSSDDESGLQATSSYN 357

Query: 334 QLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILI 393
           QL VLL RG +K KRD TLT++R++VN  V LMLG L+  +G   + VL NYNLLFSIL+
Sbjct: 358 QLKVLLRRGYIKTKRDQTLTYMRLMVNASVGLMLGTLYWQAGSDGTKVLDNYNLLFSILM 417

Query: 394 HHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYP 453
           HH+M++MML ILTFP EMSILIKEHFNRWYSLK YY SV L+DIPV+  CC LF+TI+Y 
Sbjct: 418 HHMMSTMMLTILTFPNEMSILIKEHFNRWYSLKMYYTSVTLVDIPVSIACCALFSTIIYY 477

Query: 454 LTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVNGTFVGPVLVVPMMMFSGFGV 513
           +TGQP++  RF MF   S+LVVF+AQS G MVGAVFNV+NGTF+GP L VPMMMF+GFGV
Sbjct: 478 MTGQPLDKQRFMMFFVISMLVVFVAQSFGLMVGAVFNVINGTFLGPTLSVPMMMFAGFGV 537

Query: 514 SINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQC-DELYCHYKEPKKFLQTVSQP 572
           ++ D+P Y+ WGS +SYLRYGLEG V AIYGL+R+T+ C D+ YCHYK PKK L+ ++  
Sbjct: 538 TLRDLPGYLYWGSYISYLRYGLEGIVGAIYGLERETIWCPDDAYCHYKYPKKLLEDIAMK 597

Query: 573 SDNFWSSSVTLVFILIVMKLIAYFFLSWRIKVMR 606
            D F +  + LV IL  ++++AY  L +++  +R
Sbjct: 598 GDQFGNDVIALVLILFFLRIVAYVLLRYKLMAVR 631

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270006281|gb|EFA02729.1| hypothetical protein TcasGA2_TC008454 [Tribolium castaneum]

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/636 (53%), Positives = 431/636 (67%), Gaps = 73/636 (11%)

Query: 12  LSSSESGT-SLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGP 70
           +   ESGT S      I+++F+D+ YT S  LGF++  K++L  + G+FP  QLIAIMGP
Sbjct: 30  MQEEESGTFSRPPQQTIDLQFEDIKYTAS--LGFRKGTKEILHGVNGKFPPGQLIAIMGP 87

Query: 71  SGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLT------ 124
           SGAGKS+LLD+LSGYR  GV+G +  NG  RN+ AFR+ SCYIQQDDRLQPLLT      
Sbjct: 88  SGAGKSTLLDILSGYRIRGVSGTVYANGFPRNLKAFRKSSCYIQQDDRLQPLLTTAENMQ 147

Query: 125 -------------------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV 165
                              IE ++  LGL ++ NT+++ LSGGQKKR             
Sbjct: 148 IAADLKLGPEVSQREKTETIEEILKWLGLSKTMNTKAAGLSGGQKKR------------- 194

Query: 166 MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGR 225
                            LSIALELINNP VMFLDEPTTGLDS SCSQCIKLLK +++QGR
Sbjct: 195 -----------------LSIALELINNPTVMFLDEPTTGLDSSSCSQCIKLLKDLARQGR 237

Query: 226 TIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIE 285
           TI+CTIHQPSA+LFQ+FDQVY+L+ G+CLYQG+T  LV +L+ V  PCP+YHNPADFVIE
Sbjct: 238 TIVCTIHQPSASLFQLFDQVYVLAAGRCLYQGSTTNLVPFLNDVKYPCPQYHNPADFVIE 297

Query: 286 LASGEYGVDNINAMVEQAQNDV--------------KPDKKTKKTKHCTYSNQILQDTSY 331
           LA  EYG + I+ MV   +N                +P       K  +     LQ TS 
Sbjct: 298 LACEEYGPEIIDTMVATTENGSSVAYFDKEVVPTLKRPIAGGNSAKTSSDDESGLQATSS 357

Query: 332 SNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSI 391
            NQL VLL RG +K KRD TLT++R++VN  V LMLG L+  +G   + VL NYNLLFSI
Sbjct: 358 YNQLKVLLRRGYIKTKRDQTLTYMRLMVNASVGLMLGTLYWQAGSDGTKVLDNYNLLFSI 417

Query: 392 LIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIV 451
           L+HH+M++MML ILTFP EMSILIKEHFNRWYSLK YY SV L+DIPV+  CC LF+TI+
Sbjct: 418 LMHHMMSTMMLTILTFPNEMSILIKEHFNRWYSLKMYYTSVTLVDIPVSIACCALFSTII 477

Query: 452 YPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVNGTFVGPVLVVPMMMFSGF 511
           Y +TGQP++  RF MF   S+LVVF+AQS G MVGAVFNV+NGTF+GP L VPMMMF+GF
Sbjct: 478 YYMTGQPLDKQRFMMFFVISMLVVFVAQSFGLMVGAVFNVINGTFLGPTLSVPMMMFAGF 537

Query: 512 GVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQC-DELYCHYKEPKKFLQTVS 570
           GV++ D+P Y+ WGS +SYLRYGLEG V AIYGL+R+T+ C D+ YCHYK PKK L+ ++
Sbjct: 538 GVTLRDLPGYLYWGSYISYLRYGLEGIVGAIYGLERETIWCPDDAYCHYKYPKKLLEDIA 597

Query: 571 QPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIKVMR 606
              D F +  + LV IL  ++++AY  L +++  +R
Sbjct: 598 MKGDQFGNDVIALVLILFFLRIVAYVLLRYKLMAVR 633

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322788385|gb|EFZ14056.1| hypothetical protein SINV_03712 [Solenopsis invicta]

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/633 (52%), Positives = 430/633 (67%), Gaps = 73/633 (11%)

Query: 15  SESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAG 74
           S   +++   D I+I F+D+TYTVS  LGF++  K++L  + GR PS QLIA+MGPSGAG
Sbjct: 95  SPDDSAINRQDSIDIIFEDITYTVS--LGFRKGMKEILHGIAGRLPSAQLIALMGPSGAG 152

Query: 75  KSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLT---------- 124
           KS+LLD+LSG+R+ GV G I  NG  R++N FR+ S YI QDDRL+PLLT          
Sbjct: 153 KSTLLDILSGFRTTGVDGVIYINGRVRHLNTFRKCSAYITQDDRLEPLLTVVENMRVAAD 212

Query: 125 ---------------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLD 169
                          IE++++ LGL E  NTRS +LSGGQKKR                 
Sbjct: 213 LKLPSNTPQHKKEMIIEDILTTLGLYEHMNTRSGRLSGGQKKR----------------- 255

Query: 170 EPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIIC 229
                        LSIALEL+NNP VMFLDEPTTGLDS SC+Q + LLK++++QGRTI+C
Sbjct: 256 -------------LSIALELVNNPMVMFLDEPTTGLDSSSCTQVVNLLKLLARQGRTIVC 302

Query: 230 TIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASG 289
           TIHQPSA+LFQ+FDQVY+L+ G C+YQGATD+LV YL S+ LPCP YHNPAD++IELA G
Sbjct: 303 TIHQPSASLFQLFDQVYVLTKGDCIYQGATDKLVPYLESMKLPCPMYHNPADYIIELACG 362

Query: 290 EYGVDNINAMVEQAQN----------DVKPDKKTKKTKHC---TYSNQILQDTSYSNQLG 336
           EYG D I+ ++  +QN          ++  D KT +  H       N  L  T+  +Q+ 
Sbjct: 363 EYGDDKIDTLIMGSQNGRNLQWFGNSEILKDAKTLRAAHPLKDVTRNNSLHATNLIHQIR 422

Query: 337 VLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHV 396
           +LL RG +  KRD+TLTHLRI VNI V +MLG +F  SG   S VL NYNLLFSILIHH+
Sbjct: 423 ILLRRGYIMAKRDTTLTHLRIAVNILVGIMLGCVFMQSGADGSRVLDNYNLLFSILIHHM 482

Query: 397 MTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTG 456
           MT+MML I+TFP++MSIL+KEHFNRWYSLKA+Y ++ ++D+P++  CC  F+ I+Y ++ 
Sbjct: 483 MTTMMLTIVTFPLQMSILLKEHFNRWYSLKAFYTTITIIDMPISIVCCFGFSLIIYFMSA 542

Query: 457 QPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVNGTFVGPVLVVPMMMFSGFGVSIN 516
           QP+E+ RF MF   SLL++ I Q  G M+GAVFNVVNGTF+GP L VP+MMF+GFGVS+ 
Sbjct: 543 QPLEIIRFLMFTAISLLIMLIGQGTGLMIGAVFNVVNGTFMGPTLAVPLMMFAGFGVSLR 602

Query: 517 DIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCD---ELYCHYKEPKKFLQTVSQPS 573
           D+P Y++WGS LSYLRYGLEG VAAIYGLDR  L C    ELYCHY+ P KFL  ++   
Sbjct: 603 DLPSYLKWGSYLSYLRYGLEGLVAAIYGLDRPILDCKEKGELYCHYRYPSKFLSDIAMGG 662

Query: 574 DNFWSSSVTLVFILIVMKLIAYFFLSWRIKVMR 606
           D FW+  + L+ IL++ +  AY  L W++   R
Sbjct: 663 DQFWNDVIALITILLITRCGAYLLLRWKLMSYR 695

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194761598|ref|XP_001963016.1| GF14147 [Drosophila ananassae] gi|190616713|gb|EDV32237.1| GF14147 [Drosophila ananassae]

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/601 (53%), Positives = 433/601 (72%), Gaps = 21/601 (3%)

Query: 20  SLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL 79
           +L   + ++++FK+L+ TV+  LGFK+  K++L N+CG+FP +QLIAIMGPSGAGKS+LL
Sbjct: 100 NLPAREPVDMEFKELSLTVN--LGFKRGSKEILHNVCGKFPGSQLIAIMGPSGAGKSTLL 157

Query: 80  DVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQN 139
           D LSG+++ GV G IL NG  R++ +FRR+SCYI QDDRLQPLLT+   M +    +  N
Sbjct: 158 DALSGFKTTGVDGSILLNGRRRDLPSFRRMSCYITQDDRLQPLLTVNENMHIAADLKLGN 217

Query: 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLD 199
           T S +    + + + + L L N+ + +     T      QKKRLSIA+ELINNP VMFLD
Sbjct: 218 TVSYEEKESRIEDILLLLGLYNHDQTL-----TVRLSGGQKKRLSIAMELINNPTVMFLD 272

Query: 200 EPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259
           EPTTGLDS SC++ ++LLK ++ QGRTIICTIHQP+A LFQ+FDQVY+LS G C+YQG+T
Sbjct: 273 EPTTGLDSSSCTKVLELLKRLTSQGRTIICTIHQPTAKLFQIFDQVYVLSAGNCVYQGST 332

Query: 260 DQLVNYLSSVNLPCPKYHNPADFVIELASGEYGVDNINAMVEQAQND------------V 307
            +LV +L SV+LPCP YHNPAD++IELA GEYG D I+ +    +N             +
Sbjct: 333 QKLVPFLQSVDLPCPMYHNPADYIIELACGEYGFDKIDTLKSATENGSALTWFDNPSSVM 392

Query: 308 KPDKKTKKTKHCTYSN-QILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALM 366
           + +   +K      S  + L+DTSYSNQ  VL+ RG +K KRD+T+THLRI VNI VA +
Sbjct: 393 RAEALMRKFPIPKRSKARSLEDTSYSNQCSVLIRRGYIKAKRDTTMTHLRIGVNIAVAAL 452

Query: 367 LGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLK 426
            G ++ ++G   S VL NYNLLF+IL+HH MT+MML +LTFP+E+SILIKEHFNRWYSLK
Sbjct: 453 FGAMYDHTGREGSRVLDNYNLLFAILMHHSMTTMMLTVLTFPIELSILIKEHFNRWYSLK 512

Query: 427 AYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVG 486
           AYY ++ L+D+PV+   C LFT IVY  + QPME  RF MF   SL+ VF+ QS G M+G
Sbjct: 513 AYYTAMTLVDLPVSILSCFLFTGIVYLWSYQPMEWVRFWMFFVISLMTVFVGQSFGLMIG 572

Query: 487 AVFNVVNGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLD 546
           A F+V NGTF+ PVL +PMMMF+GFGV++ D+P Y++WGS +SYLRYGLEG++AAIYGLD
Sbjct: 573 AWFDVTNGTFLAPVLTIPMMMFAGFGVTLRDLPSYLKWGSHISYLRYGLEGFIAAIYGLD 632

Query: 547 RKTLQCDEL-YCHYKEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIKVM 605
           R TL CDE  YCHY+ PKKFL+ ++   D FW+  + L  ++++ +L +Y  L  +IK +
Sbjct: 633 RGTLACDEAPYCHYRYPKKFLEEITMRGDQFWNDVLALTLMIVLFRLASYIILKAKIKSI 692

Query: 606 R 606
           R
Sbjct: 693 R 693

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157119342|ref|XP_001653364.1| abc transporter [Aedes aegypti] gi|108875359|gb|EAT39584.1| AAEL008635-PA [Aedes aegypti]

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/627 (52%), Positives = 430/627 (68%), Gaps = 72/627 (11%)

Query: 20  SLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL 79
           +L   + ++I+FKD++Y VS  +GF++  K++L  + G+FP +QLIAIMGPSGAGKS+LL
Sbjct: 82  NLPPCEPVDIQFKDVSYCVS--MGFRKGQKEILHKVNGKFPGSQLIAIMGPSGAGKSTLL 139

Query: 80  DVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLT--------------- 124
           DVLSGYR  GV G +  NG  RN+N+FRR++CYI Q D+LQ LLT               
Sbjct: 140 DVLSGYRRTGVEGAVYVNGRIRNLNSFRRMTCYITQQDQLQTLLTVLENMRIAADLKLGP 199

Query: 125 ----------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
                     IE+++++LGL E Q+T +SQLSGGQKKR                      
Sbjct: 200 ETSKHEKESIIEDILTVLGLYEHQHTITSQLSGGQKKR---------------------- 237

Query: 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQP 234
                   LSIALELINNP +MFLDEPTTGLDS SC+Q + LLK +++QGRTIICTIHQP
Sbjct: 238 --------LSIALELINNPTIMFLDEPTTGLDSYSCNQVVDLLKQLAKQGRTIICTIHQP 289

Query: 235 SATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASGEYGVD 294
           SA LFQ FDQVY+LS G+C+YQG T  LV +L +V++PCP YHNPAD+VIELA GE+G+D
Sbjct: 290 SAKLFQEFDQVYVLSSGECMYQGCTTNLVPFLQTVDMPCPVYHNPADYVIELACGEHGMD 349

Query: 295 NINAMVEQAQNDVKPD--------------KKTKKTKHCTYSNQILQDTSYSNQLGVLLS 340
            I  MV +  N    D              +K    K     ++ L  TS  +QL VL+ 
Sbjct: 350 KIQTMVTEMGNGESTDWFSDRSKVLKLEQLRKKYPLKKVIEQSEDLTATSQFHQLEVLIK 409

Query: 341 RGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSM 400
           RG++K KRD+TLTHLRI VNI +A MLG LF ++G   S VL NYNLLFSIL+HH+M +M
Sbjct: 410 RGIIKAKRDATLTHLRIGVNICIAAMLGFLFVDAGNEGSRVLDNYNLLFSILMHHMMATM 469

Query: 401 MLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPME 460
           ML +LTFP EM +++KEHFNRWYSLK+YY+SVNL+D+P++ FCC+LFT I+Y ++GQPME
Sbjct: 470 MLTVLTFPTEMGVILKEHFNRWYSLKSYYLSVNLIDLPLSFFCCMLFTCIIYFMSGQPME 529

Query: 461 LTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVNGTFVGPVLVVPMMMFSGFGVSINDIPK 520
             RF MF   S L+V IAQS+G  +GA FNVVNGTF+GPVL +PMMMF+GFGV++ D+P 
Sbjct: 530 WFRFGMFFTISFLIVLIAQSIGLAIGAWFNVVNGTFLGPVLSIPMMMFAGFGVTLRDLPS 589

Query: 521 YMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCD-ELYCHYKEPKKFLQTVSQPSDNFWSS 579
           Y++WGS +SYLRYGLEGYV AIYG +R TL C+ + YCHY+ P KFL  +S   D FW  
Sbjct: 590 YLKWGSHISYLRYGLEGYVNAIYGENRATLDCELKPYCHYRYPAKFLSEISMEGDQFWKD 649

Query: 580 SVTLVFILIVMKLIAYFFLSWRIKVMR 606
              L   L++++L+ YF L W++  +R
Sbjct: 650 VYALTGTLVLVRLLCYFALRWKVIAVR 676

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194859434|ref|XP_001969375.1| GG23992 [Drosophila erecta] gi|190661242|gb|EDV58434.1| GG23992 [Drosophila erecta]

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/606 (53%), Positives = 434/606 (71%), Gaps = 31/606 (5%)

Query: 20  SLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL 79
           +L   + ++++FK+L+ TV   LGF +  K++L N+CG+FP +QLIAIMGPSGAGKS+LL
Sbjct: 98  NLPAREPVDMEFKELSLTVK--LGFNRGSKEILHNVCGKFPGSQLIAIMGPSGAGKSTLL 155

Query: 80  DVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQN 139
           D LSG+++ GV G IL NG  R++ +FRR+SCYI QDDRLQPLLT+   M +    +   
Sbjct: 156 DALSGFKTTGVDGSILLNGRRRDLPSFRRMSCYITQDDRLQPLLTVNENMHIAADLKLGQ 215

Query: 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLD 199
           T S +    + + + + L L N+ + +     T      QKKRLSIA+ELINNP VMFLD
Sbjct: 216 TVSYEEKESRIEDILLLLGLYNHDQTL-----TMRLSGGQKKRLSIAMELINNPTVMFLD 270

Query: 200 EPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259
           EPTTGLDS SC++ ++LLK ++ QGRTIICTIHQP+A LFQ+FDQVY+LS G C+YQG+T
Sbjct: 271 EPTTGLDSSSCTKVLELLKKLTSQGRTIICTIHQPTAKLFQIFDQVYVLSAGNCVYQGST 330

Query: 260 DQLVNYLSSVNLPCPKYHNPADFVIELASGEYGVDNINAM------------------VE 301
            +LV +L SV+LPCP YHNPAD++IELA GEYG D ++ +                  V 
Sbjct: 331 QKLVPFLQSVDLPCPMYHNPADYIIELACGEYGYDKVDTLKVATENGSCLTWFDNPSAVL 390

Query: 302 QAQNDVKPDKKTKKTKHCTYSNQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNI 361
           +A+  ++     KK+K     ++ L+DTSYSNQ  VLL RG +K KRD+T+THLRI VNI
Sbjct: 391 RAEVLMRKYPIPKKSK-----SRSLEDTSYSNQCSVLLRRGFIKAKRDTTMTHLRIGVNI 445

Query: 362 FVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNR 421
            VA + G ++ ++G   S VL NYNLLF+IL+HH MT+MML +LTFPM++SILIKEHFNR
Sbjct: 446 AVAALFGAMYDHTGREGSRVLDNYNLLFAILMHHSMTTMMLTVLTFPMDISILIKEHFNR 505

Query: 422 WYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSV 481
           WYSLKAYY ++ L+D+P++   C LFT IVY  + QPME  RF MF   SLL VF+  S 
Sbjct: 506 WYSLKAYYTAMTLVDLPISTISCFLFTVIVYLWSYQPMEWIRFFMFFAISLLTVFVGHSF 565

Query: 482 GYMVGAVFNVVNGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAA 541
           G M+GA F+VVNGTF+ PVL +PMMMF+GFGV++ D+P Y+RWGS +SYLRYGLEG+++A
Sbjct: 566 GLMIGAWFDVVNGTFLAPVLTIPMMMFAGFGVTLRDLPSYLRWGSHISYLRYGLEGFISA 625

Query: 542 IYGLDRKTLQCDEL-YCHYKEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSW 600
           IYGLDR TL C+E  YCHY+ PKKFL+ ++   D FW+  + LV ++++ + ++Y  L  
Sbjct: 626 IYGLDRGTLACEEAPYCHYRYPKKFLEEITMRGDQFWNDVIALVVMILIFRFMSYVVLKA 685

Query: 601 RIKVMR 606
           +IK +R
Sbjct: 686 KIKSIR 691

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158288372|ref|XP_310233.4| AGAP009463-PA [Anopheles gambiae str. PEST] gi|157019219|gb|EAA45250.4| AGAP009463-PA [Anopheles gambiae str. PEST]

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/640 (52%), Positives = 439/640 (68%), Gaps = 74/640 (11%)

Query: 9   SNSLSSSE--SGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIA 66
           +N++S+ E     +L   + ++I+FKD++Y VS  LGF++  K++L N+ G+FP +QLIA
Sbjct: 50  ANAVSNHELRPFQNLPAREPVDIQFKDVSYCVS--LGFRKGQKEILHNVNGKFPGSQLIA 107

Query: 67  IMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTI- 125
           IMGPSGAGKS+LLDVLSGYR  GV G +  NG  RN+N+FRR++CYI QDDRLQ LLT+ 
Sbjct: 108 IMGPSGAGKSTLLDVLSGYRRTGVEGAVYVNGRIRNLNSFRRMTCYITQDDRLQTLLTVV 167

Query: 126 ------------------------ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELIN 161
                                   E+++++LGL   Q T +  LSGGQ+KRL        
Sbjct: 168 ENMRIAADLKLGPEVSRHEKESIVEDILTVLGLYNHQFTITKLLSGGQRKRL-------- 219

Query: 162 NPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMIS 221
                                 SIALELINNP +MFLDEPTTGLDS SC+Q + LLK ++
Sbjct: 220 ----------------------SIALELINNPTIMFLDEPTTGLDSSSCNQVVDLLKQLA 257

Query: 222 QQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPAD 281
           +QGRTIICTIHQPSA LFQ FDQVY+LS G+C+YQG T+ LV +L SV++PCP YHNPAD
Sbjct: 258 KQGRTIICTIHQPSAKLFQEFDQVYVLSNGECMYQGCTNSLVPFLQSVDMPCPVYHNPAD 317

Query: 282 FVIELASGEYGVDNINAMVEQAQND------------VKPDKKTKK--TKHCTYSNQILQ 327
           +VIELA GEYG + I  MV +  N             +KP++  +K   K     N+ L 
Sbjct: 318 YVIELACGEYGEERIQRMVMEMGNGECTEWFTDKRKLLKPEQLRQKYPLKKIIEQNEDLT 377

Query: 328 DTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNL 387
            TS  +QL VL+ RG++K KRD+TLTHLRI VNI +A MLG LF ++G   S VL NYNL
Sbjct: 378 ATSQVHQLQVLIKRGIIKAKRDATLTHLRIGVNIIIAAMLGFLFIDAGNEGSRVLDNYNL 437

Query: 388 LFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLF 447
           LFSIL+HH+M +MML +LTFP EM +++KEHFNRWY+LK YY+SV+++D+P++ FCCL+F
Sbjct: 438 LFSILMHHMMATMMLTVLTFPTEMGVILKEHFNRWYTLKCYYLSVSIIDLPLSVFCCLIF 497

Query: 448 TTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVNGTFVGPVLVVPMMM 507
           T I+Y ++GQPME  RF MF   SLL+V IAQS+G  +GA FNVVNGTF+GPVL +PMMM
Sbjct: 498 TIIIYLMSGQPMEWFRFGMFFTISLLIVLIAQSIGLTIGAWFNVVNGTFLGPVLTIPMMM 557

Query: 508 FSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCD-ELYCHYKEPKKFL 566
           F+GFGV++ D+P Y++WGS +SYLRYGLEGYV AIYG +R+TL C+ + YCHY+ P KFL
Sbjct: 558 FAGFGVTLRDLPSYLKWGSHISYLRYGLEGYVNAIYGENRETLDCELKPYCHYRYPAKFL 617

Query: 567 QTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIKVMR 606
             +S   D FW     L   L+++++  YF L W++  +R
Sbjct: 618 SEISMEGDQFWKDVYALCATLLLVRVCCYFCLRWKVISVR 657

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021673|gb|EGI62032.1| ATP-binding cassette sub-family G member 4 [Acromyrmex echinatior]

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/647 (50%), Positives = 429/647 (66%), Gaps = 79/647 (12%)

Query: 7   ELSNSLSSSESGTSLETA-----DRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPS 61
           E  ++    E G   + A     + ++I F+++TYT+S    F++E K++L  + GR  S
Sbjct: 22  EPKSTFKRREDGMPSDAAHSNGKESVDIIFENITYTISHR--FRREEKEILHGISGRLSS 79

Query: 62  NQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQP 121
            QLIA+MGPSGAGKS+LLD+LSG+R+ G+ G I  NG  R++N FR+ S YI QDDRL+P
Sbjct: 80  KQLIALMGPSGAGKSTLLDILSGFRTTGMDGSIYVNGRIRHLNNFRKCSAYITQDDRLEP 139

Query: 122 LLT-------------------------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIA 156
           LLT                         IE++++ LGL E  NTRS +LSGGQKKR    
Sbjct: 140 LLTVIENMRVAADLKLPSSTPKHKKEMIIEDILTTLGLYEHMNTRSGRLSGGQKKR---- 195

Query: 157 LELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKL 216
                                     LSIALEL+NNP VMFLDEPTTGLDS SC Q + L
Sbjct: 196 --------------------------LSIALELVNNPTVMFLDEPTTGLDSSSCMQVVNL 229

Query: 217 LKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKY 276
           LK++++QGRTIICTIHQPSA+LFQ+FDQVY+L+ G CLYQGAT +L+ YL ++ LPCP Y
Sbjct: 230 LKILARQGRTIICTIHQPSASLFQLFDQVYVLTNGDCLYQGATSKLLPYLENMKLPCPMY 289

Query: 277 HNPADFVIELASGEYGVDNINAMVEQAQN----------DVKPDKKTKKTKHC----TYS 322
           HNPAD++IELA GEYG D IN ++  +QN          +V  D K+ + +H        
Sbjct: 290 HNPADYIIELACGEYGYDKINTLIMGSQNGRNLQWFDNPEVLKDAKSLRAEHPLKNEVND 349

Query: 323 NQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVL 382
           N  L  T+  +Q+ +LL RG +  KRD TLTHLR++VNI V +MLG +F  SG   S VL
Sbjct: 350 NSGLHATNLVHQIKILLRRGFIMCKRDMTLTHLRVVVNIVVGIMLGTVFLRSGADGSRVL 409

Query: 383 INYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGF 442
            NYNLLF+ILIHH+MT+MML I+TFPM+MSIL+KEHFNRWYSLKA+Y ++ L+D+P++  
Sbjct: 410 DNYNLLFAILIHHMMTTMMLTIVTFPMQMSILLKEHFNRWYSLKAFYTAITLIDVPISII 469

Query: 443 CCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVNGTFVGPVLV 502
           CC+ F+ IVY ++ QP E+ RF+MF   SLL+VFI Q  G M+GAVFNVVNGTF+GP L 
Sbjct: 470 CCVFFSIIVYFMSAQPWEIIRFSMFLAISLLIVFIGQGTGLMIGAVFNVVNGTFIGPTLA 529

Query: 503 VPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCD---ELYCHY 559
            P+MMF+GFGVS+ D+P Y++WGS +SYLRYGLEG+V AIYGLDR  L C    E YCHY
Sbjct: 530 CPLMMFAGFGVSLRDLPSYLKWGSYISYLRYGLEGFVGAIYGLDRPILDCKEKGEFYCHY 589

Query: 560 KEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIKVMR 606
           K P KFL  +S   D FW+  + L  IL++ +  AY  L W++   R
Sbjct: 590 KYPSKFLSDISMKGDQFWNDIIALATILLITRCSAYLLLRWKLMSYR 636

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125985129|ref|XP_001356328.1| GA19180 [Drosophila pseudoobscura pseudoobscura] gi|54644651|gb|EAL33391.1| GA19180 [Drosophila pseudoobscura pseudoobscura]

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/611 (52%), Positives = 435/611 (71%), Gaps = 31/611 (5%)

Query: 15  SESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAG 74
           S++  +L   + ++I+FK+L+ TV+  LGF +  K++L N+CG+FP +QLIAIMGPSGAG
Sbjct: 98  SDALNNLPAREPVDIEFKELSLTVN--LGFNRGSKEILHNVCGKFPGSQLIAIMGPSGAG 155

Query: 75  KSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGL 134
           KS+LLD LSG+++ GV G IL NG  R++ +FRR+SCYI QDDRLQPLLT+   M +   
Sbjct: 156 KSTLLDALSGFKTTGVDGSILLNGRRRDLPSFRRMSCYITQDDRLQPLLTVNENMHIAAD 215

Query: 135 DESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPR 194
            +  +T S +    + + + + L L ++ + +     T      QKKRLSIA+ELINNP 
Sbjct: 216 LKLGHTVSYEEKESRIEDILLLLGLYDHDQTL-----TLRLSGGQKKRLSIAMELINNPT 270

Query: 195 VMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL 254
           VMFLDEPTTGLDS SC++ ++LLK ++ QGRTIICTIHQP+A LFQ+FDQVY+LS G C+
Sbjct: 271 VMFLDEPTTGLDSSSCTKVLELLKKLTTQGRTIICTIHQPTAKLFQIFDQVYVLSAGNCV 330

Query: 255 YQGATDQLVNYLSSVNLPCPKYHNPADFVIELASGEYGVDNINAMVEQAQND-------- 306
           YQG T++LV +L +V+LPCP YHNPAD++IELA GEYG D I+ +    +N         
Sbjct: 331 YQGGTEKLVPFLHAVDLPCPMYHNPADYIIELACGEYGYDKIDTLKSATENGSCLTWFNN 390

Query: 307 ----------VKPDKKTKKTKHCTYSNQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLR 356
                     ++     K+TK     +  L+DTSY+NQ  VLL RG +K +RD+T+THLR
Sbjct: 391 PSAVLRSEALMRKYPIPKRTK-----SDSLEDTSYANQCSVLLRRGYIKARRDTTMTHLR 445

Query: 357 IIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIK 416
           I VNI VAL+ G ++ ++G   S VL NYNLLF+IL+HH MT+MML +LTFP+EMSILIK
Sbjct: 446 IGVNIAVALLFGAMYDHTGREGSRVLDNYNLLFAILMHHSMTTMMLTVLTFPIEMSILIK 505

Query: 417 EHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVF 476
           EHFNRWYS+KAYY ++ L+D+P++   C LFT+IVY  + QPME  RF MF   SLL VF
Sbjct: 506 EHFNRWYSMKAYYTAMTLVDLPISIISCFLFTSIVYLWSYQPMEWVRFWMFFAISLLTVF 565

Query: 477 IAQSVGYMVGAVFNVVNGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLE 536
           +  S G M+GA F+VVNGTF+ PVL +PMMMF+GFGV++ D+P Y+RWGS +SYLRYGLE
Sbjct: 566 VGHSFGLMIGAWFDVVNGTFLAPVLTIPMMMFAGFGVTLRDLPSYLRWGSHISYLRYGLE 625

Query: 537 GYVAAIYGLDRKTLQCDEL-YCHYKEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAY 595
           G+++AIYGLDR  L C+E  YCHY+ PKKFL+ ++   D FW+  + L  ++++ +  +Y
Sbjct: 626 GFISAIYGLDRGVLACNEAPYCHYRYPKKFLEEITMSGDQFWNDVIALSAMILIFRFFSY 685

Query: 596 FFLSWRIKVMR 606
             L  +IK +R
Sbjct: 686 IVLKAKIKAIR 696

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|15292537|gb|AAK93537.1| SD06390p [Drosophila melanogaster]

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/606 (53%), Positives = 432/606 (71%), Gaps = 31/606 (5%)

Query: 20  SLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL 79
           +L   + ++++FK+L+ TV   LGF +  K++L N+CG+FP +QLIAIMGPSGAGKS+LL
Sbjct: 96  NLPAREPVDMEFKELSLTVK--LGFNRGSKEILHNVCGKFPGSQLIAIMGPSGAGKSTLL 153

Query: 80  DVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQN 139
           D LSG+++ GV G IL NG  R++ +FRR+SCYI QDDRLQPLLT+   M +    +   
Sbjct: 154 DALSGFKTTGVDGSILLNGRRRDLPSFRRMSCYITQDDRLQPLLTVNENMHIAADLKLGQ 213

Query: 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLD 199
           T S +    + + + + L L N+ + +     T      QKKRLSIA+ELINNP VMFLD
Sbjct: 214 TVSYEEKESRIEDILLLLGLYNHDQTL-----TMRLSGGQKKRLSIAMELINNPTVMFLD 268

Query: 200 EPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259
           EPTTGLDS SC++ ++LLK ++ QGRTIICTIHQP+A LFQ+FDQVY+LS G C+YQG+T
Sbjct: 269 EPTTGLDSSSCTKVLELLKKLTSQGRTIICTIHQPTAKLFQIFDQVYVLSAGNCVYQGST 328

Query: 260 DQLVNYLSSVNLPCPKYHNPADFVIELASGEYGVDNINAM------------------VE 301
            +LV +L SV+LPCP YHNPAD++IELA GEYG D ++ +                  V 
Sbjct: 329 QKLVPFLQSVDLPCPMYHNPADYIIELACGEYGYDKVDTLKLATENGSCLTWFDNPSAVL 388

Query: 302 QAQNDVKPDKKTKKTKHCTYSNQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNI 361
           +A+  ++     KKTK     ++ L+DTSYSNQ  VLL RG +K KRD+T+THLRI VNI
Sbjct: 389 RAEVLMRKYPIPKKTK-----SRSLEDTSYSNQCSVLLRRGFIKAKRDTTMTHLRIGVNI 443

Query: 362 FVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNR 421
            VA + G ++ ++G   S VL NYNLLF+IL+HH MT+MML +LTFPM++SILIKEHFNR
Sbjct: 444 AVAALFGAMYDHTGREGSRVLDNYNLLFAILMHHSMTTMMLTVLTFPMDISILIKEHFNR 503

Query: 422 WYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSV 481
           WYSLKAYY ++ L+D+P++   C  FT IVY  + QPME  RF MF   SLL VF+  S 
Sbjct: 504 WYSLKAYYTAMTLVDLPISIISCFFFTVIVYLWSYQPMEWIRFFMFFSISLLTVFVGHSF 563

Query: 482 GYMVGAVFNVVNGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAA 541
           G M+GA F+VVNGTF+ PVL +PMMMF+GFGV++ D+P Y+RWGS +SYLRYGLEG+++A
Sbjct: 564 GLMIGAWFDVVNGTFLAPVLTIPMMMFAGFGVTLRDLPSYLRWGSHISYLRYGLEGFISA 623

Query: 542 IYGLDRKTLQCDEL-YCHYKEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSW 600
           IYGLDR TL C+E  YCHY+ PKKFL+ ++   D FW+  + L  +++V + ++Y  L  
Sbjct: 624 IYGLDRGTLACEEAPYCHYRYPKKFLEEITMRGDQFWNDVIALGVMILVFRFVSYVVLKA 683

Query: 601 RIKVMR 606
           +IK +R
Sbjct: 684 KIKSIR 689

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	606
FB|FBgn0032167	689	CG5853 [Drosophila melanogaste	0.943	0.830	0.539	1.5e-168
FB|FBgn0025683	699	CG3164 [Drosophila melanogaste	0.440	0.381	0.484	1.8e-133
FB|FBgn0020762	832	Atet "ABC transporter expresse	0.473	0.344	0.400	3.4e-126
UNIPROTKB|F1PPV0	689	ABCG1 "Uncharacterized protein	0.427	0.375	0.509	1.2e-123
UNIPROTKB|P45844	678	ABCG1 "ATP-binding cassette su	0.452	0.404	0.489	1.2e-123
UNIPROTKB|E2QTR8	646	ABCG4 "Uncharacterized protein	0.943	0.885	0.407	3.5e-123
ZFIN|ZDB-GENE-080215-10	644	abcg4b "ATP-binding cassette,	0.945	0.889	0.410	9.2e-123
UNIPROTKB|Q9H172	646	ABCG4 "ATP-binding cassette su	0.943	0.885	0.409	1.5e-122
UNIPROTKB|F1SAH2	646	ABCG4 "Uncharacterized protein	0.943	0.885	0.407	1.9e-122
ZFIN|ZDB-GENE-050517-39	656	abcg4a "ATP-binding cassette,	0.942	0.870	0.404	1.7e-121

FB|FBgn0032167 CG5853 [Drosophila melanogaster (taxid:7227)]

 Score = 1639 (582.0 bits), Expect = 1.5e-168, P = 1.5e-168
 Identities = 321/595 (53%), Positives = 425/595 (71%)

Query:    27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR 86
             ++++FK+L+ TV   LGF +  K++L N+CG+FP +QLIAIMGPSGAGKS+LLD LSG++
Sbjct:   103 VDMEFKELSLTVK--LGFNRGSKEILHNVCGKFPGSQLIAIMGPSGAGKSTLLDALSGFK 160

Query:    87 SNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTI-ENVMSLLGLDESQNTRSSQL 145
             + GV G IL NG  R++ +FRR+SCYI QDDRLQPLLT+ EN+     L   Q T S + 
Sbjct:   161 TTGVDGSILLNGRRRDLPSFRRMSCYITQDDRLQPLLTVNENMHIAADLKLGQ-TVSYEE 219

Query:   146 SGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL 205
                + + + + L L N+ + +     T      QKKRLSIA+ELINNP VMFLDEPTTGL
Sbjct:   220 KESRIEDILLLLGLYNHDQTL-----TMRLSGGQKKRLSIAMELINNPTVMFLDEPTTGL 274

Query:   206 DSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNY 265
             DS SC++ ++LLK ++ QGRTIICTIHQP+A LFQ+FDQVY+LS G C+YQG+T +LV +
Sbjct:   275 DSSSCTKVLELLKKLTSQGRTIICTIHQPTAKLFQIFDQVYVLSAGNCVYQGSTQKLVPF 334

Query:   266 LSSVNLPCPKYHNPADFVIELASGEYGVDNINAMVEQAQNDV------KPDXXXXXXXHC 319
             L SV+LPCP YHNPAD++IELA GEYG D ++ +    +N         P          
Sbjct:   335 LQSVDLPCPMYHNPADYIIELACGEYGYDKVDTLKLATENGSCLTWFDNPSAVLRAEVLM 394

Query:   320 T-Y------SNQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQ 372
               Y       ++ L+DTSYSNQ  VLL RG +K KRD+T+THLRI VNI VA + G ++ 
Sbjct:   395 RKYPIPKKTKSRSLEDTSYSNQCSVLLRRGFIKAKRDTTMTHLRIGVNIAVAALFGAMYD 454

Query:   373 NSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSV 432
             ++G   S VL NYNLLF+IL+HH MT+MML +LTFPM++SILIKEHFNRWYSLKAYY ++
Sbjct:   455 HTGREGSRVLDNYNLLFAILMHHSMTTMMLTVLTFPMDISILIKEHFNRWYSLKAYYTAM 514

Query:   433 NLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVV 492
              L+D+P++   C  FT IVY  + QPME  RF MF   SLL VF+  S G M+GA F+VV
Sbjct:   515 TLVDLPISIISCFFFTVIVYLWSYQPMEWIRFFMFFSISLLTVFVGHSFGLMIGAWFDVV 574

Query:   493 NGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQC 552
             NGTF+ PVL +PMMMF+GFGV++ D+P Y+RWGS +SYLRYGLEG+++AIYGLDR TL C
Sbjct:   575 NGTFLAPVLTIPMMMFAGFGVTLRDLPSYLRWGSHISYLRYGLEGFISAIYGLDRGTLAC 634

Query:   553 DEL-YCHYKEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIKVMR 606
             +E  YCHY+ PKKFL+ ++   D FW+  + L  +++V + ++Y  L  +IK +R
Sbjct:   635 EEAPYCHYRYPKKFLEEITMRGDQFWNDVIALGVMILVFRFVSYVVLKAKIKSIR 689

GO:0005215 "transporter activity" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

FB|FBgn0025683 CG3164 [Drosophila melanogaster (taxid:7227)]

 Score = 668 (240.2 bits), Expect = 1.8e-133, Sum P(2) = 1.8e-133
 Identities = 137/283 (48%), Positives = 194/283 (68%)

Query:    27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR 86
             +++ F +LTY V  G   +   K +LK + GR  S +L AIMGPSGAGKS+LL++LSGY+
Sbjct:    45 VDLAFHNLTYRVKEGN--RSNAKTILKGVSGRLRSGELTAIMGPSGAGKSTLLNILSGYK 102

Query:    87 SNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTR-SSQL 145
             ++ + G +  NG  RN++AFR++S YI QD++L   LT++  M++     + N + S + 
Sbjct:   103 TSSIEGSVTMNGAERNLSAFRKLSAYIMQDNQLHGNLTVQEAMTV-----ATNLKLSKKF 157

Query:   146 SGGQKKRL--SIALEL-INNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPT 202
             S  +K  +   I L L ++  R       T +    QKKRLSIALEL++NP +MF DEPT
Sbjct:   158 SKPEKHSMIDDILLTLSLSEHRYTM----TRNLSGGQKKRLSIALELVSNPPIMFFDEPT 213

Query:   203 TGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
             +GLDS +C QCI LLKM++  GRT+ICTIHQPSA LF+MFDQ+Y L+ GQC+YQG+T QL
Sbjct:   214 SGLDSSTCFQCIHLLKMLAAGGRTVICTIHQPSARLFEMFDQLYTLADGQCVYQGSTKQL 273

Query:   263 VNYLSSVNLPCPKYHNPADFVIELASGEYGVDNINAMVEQAQN 305
             V +LS++NL CP YHNPA +VIE++ GE+G D+   +V+   N
Sbjct:   274 VPFLSTLNLECPSYHNPASYVIEVSCGEHG-DHTRKLVDAIDN 315

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0020762 Atet "ABC transporter expressed in trachea" [Drosophila melanogaster (taxid:7227)]

 Score = 639 (230.0 bits), Expect = 3.4e-126, Sum P(2) = 3.4e-126
 Identities = 115/287 (40%), Positives = 181/287 (63%)

Query:   320 TYSNQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYAS 379
             T  N+    TS   Q  +LL R    + RD  LTH+R+  ++ V  ++G+++ + G  AS
Sbjct:   546 TLPNKTGFPTSGWTQFWILLKRSFRTILRDKMLTHMRLFSHVIVGAIIGMIYYDVGNEAS 605

Query:   380 SVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPV 439
              ++ N   +F + +    T+MM  ILTFP EMS+ ++EH N WYSLKA+Y +  + D+P 
Sbjct:   606 KIMSNAGCIFFVSLFTTFTAMMPTILTFPTEMSVFVREHLNYWYSLKAFYFAKTIADMPF 665

Query:   440 AGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVNGTFVGP 499
                   ++  +VY LT QPMEL R +MF    +L   +AQS+G ++GA  N+  G F+GP
Sbjct:   666 QIVFSSVYVLVVYYLTSQPMELERVSMFVLICVLNSLVAQSLGLLIGAGMNIETGVFLGP 725

Query:   500 VLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDELYCHY 559
             V  +P ++FSGF V+ + IP Y++W + + Y+RYG EG + AIYG+DR  +QC+++YCHY
Sbjct:   726 VTTIPTILFSGFFVNFDTIPGYLQWVTYVGYVRYGFEGAMVAIYGMDRAKMQCNQMYCHY 785

Query:   560 KEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIKVMR 606
             + PKKFL+ +S  +  FW  +V L+ I   +++IAYF L W++ ++R
Sbjct:   786 RVPKKFLEEMSMDNALFWVDAVALIGIFFALRIIAYFVLRWKLHMIR 832

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|F1PPV0 ABCG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 682 (245.1 bits), Expect = 1.2e-123, Sum P(2) = 1.2e-123
 Identities = 139/273 (50%), Positives = 187/273 (68%)

Query:    27 IEIKFKDLTYTVSTGLGFKQEP-KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY 85
             + I+FKDL+Y+V  G  ++++  K +LK + G+F S +L+AIMGPSGAGKS+L+++L+GY
Sbjct:    86 VNIEFKDLSYSVPEGPWWRKKGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGY 145

Query:    86 RSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSL---LGLDESQNTRS 142
             R  G+ G +L NG  R++  FR+VSCYI QDD L P LT++  M +   L L E    R 
Sbjct:   146 RETGMKGAVLINGLPRDLRCFRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQEKDEGRR 205

Query:   143 SQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPT 202
               +     K +  AL L++          T S    Q+KRL+IALEL+NNP VMF DEPT
Sbjct:   206 EMV-----KEILTALGLLSCANTR-----TGSLSGGQRKRLAIALELVNNPPVMFFDEPT 255

Query:   203 TGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
             +GLDS SC Q + L+K ++Q GR+IICTIHQPSA LF++FDQ+Y+LS GQC+Y+G    L
Sbjct:   256 SGLDSASCFQVVSLMKGLAQGGRSIICTIHQPSAKLFELFDQLYVLSQGQCVYRGKVSNL 315

Query:   263 VNYLSSVNLPCPKYHNPADFVIELASGEYGVDN 295
             V YL  + L CP YHNPADFV+E+ASGEYG  N
Sbjct:   316 VPYLRDLGLNCPTYHNPADFVMEVASGEYGDQN 348

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|P45844 ABCG1 "ATP-binding cassette sub-family G member 1" [Homo sapiens (taxid:9606)]

 Score = 677 (243.4 bits), Expect = 1.2e-123, Sum P(2) = 1.2e-123
 Identities = 143/292 (48%), Positives = 195/292 (66%)

Query:    27 IEIKFKDLTYTVSTGLGFKQEP-KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY 85
             + I+F+DL+Y+V  G  ++++  K +LK + G+F S +L+AIMGPSGAGKS+L+++L+GY
Sbjct:    75 VNIEFRDLSYSVPEGPWWRKKGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGY 134

Query:    86 RSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSL---LGLDESQNTRS 142
             R  G+ G +L NG  R++  FR+VSCYI QDD L P LT++  M +   L L E    R 
Sbjct:   135 RETGMKGAVLINGLPRDLRCFRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQEKDEGRR 194

Query:   143 SQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPT 202
               +     K +  AL L++          T S    Q+KRL+IALEL+NNP VMF DEPT
Sbjct:   195 EMV-----KEILTALGLLSCANTR-----TGSLSGGQRKRLAIALELVNNPPVMFFDEPT 244

Query:   203 TGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
             +GLDS SC Q + L+K ++Q GR+IICTIHQPSA LF++FDQ+Y+LS GQC+Y+G    L
Sbjct:   245 SGLDSASCFQVVSLMKGLAQGGRSIICTIHQPSAKLFELFDQLYVLSQGQCVYRGKVCNL 304

Query:   263 VNYLSSVNLPCPKYHNPADFVIELASGEYGVDN---INAMVE-QAQNDVKPD 310
             V YL  + L CP YHNPADFV+E+ASGEYG  N   + A+ E    +D K D
Sbjct:   305 VPYLRDLGLNCPTYHNPADFVMEVASGEYGDQNSRLVRAVREGMCDSDHKRD 356

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0055099 "response to high density lipoprotein particle stimulus" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0010033 "response to organic substance" evidence=IDA

GO:0009720 "detection of hormone stimulus" evidence=NAS

GO:0005887 "integral to plasma membrane" evidence=IC

GO:0046983 "protein dimerization activity" evidence=NAS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0006629 "lipid metabolic process" evidence=TAS

GO:0042157 "lipoprotein metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0010745 "negative regulation of macrophage derived foam cell differentiation" evidence=TAS

GO:0010887 "negative regulation of cholesterol storage" evidence=TAS

GO:0005524 "ATP binding" evidence=IDA

GO:0043531 "ADP binding" evidence=IDA

GO:0005543 "phospholipid binding" evidence=IC

GO:0005548 "phospholipid transporter activity" evidence=IDA

GO:0033700 "phospholipid efflux" evidence=IMP

GO:0055091 "phospholipid homeostasis" evidence=IMP

GO:0015485 "cholesterol binding" evidence=IC

GO:0034436 "glycoprotein transport" evidence=IDA

GO:0042987 "amyloid precursor protein catabolic process" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0034041 "sterol-transporting ATPase activity" evidence=IDA

GO:0043691 "reverse cholesterol transport" evidence=ISS

GO:0005768 "endosome" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0045542 "positive regulation of cholesterol biosynthetic process" evidence=ISS

GO:0019534 "toxin transporter activity" evidence=IDA

GO:0034437 "glycoprotein transporter activity" evidence=IDA

GO:0008203 "cholesterol metabolic process" evidence=IDA

GO:0017127 "cholesterol transporter activity" evidence=IDA

GO:0032367 "intracellular cholesterol transport" evidence=IMP

GO:0033344 "cholesterol efflux" evidence=IDA

GO:0042632 "cholesterol homeostasis" evidence=IDA

GO:0033993 "response to lipid" evidence=IDA

GO:0009897 "external side of plasma membrane" evidence=IDA

GO:0010872 "regulation of cholesterol esterification" evidence=ISS

GO:0034374 "low-density lipoprotein particle remodeling" evidence=ISS

GO:0034375 "high-density lipoprotein particle remodeling" evidence=ISS

GO:0055037 "recycling endosome" evidence=ISS

UNIPROTKB|E2QTR8 ABCG4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1211 (431.4 bits), Expect = 3.5e-123, P = 3.5e-123
 Identities = 243/596 (40%), Positives = 367/596 (61%)

Query:    27 IEIKFKDLTYTVSTGLGFKQEP-KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY 85
             ++I+F +L+Y+V  G  +++   K +LK L G+F   +LI IMGPSGAGKS+ +++L+GY
Sbjct:    59 VDIEFVELSYSVREGPCWRKRGYKTLLKCLSGKFCRRELIGIMGPSGAGKSTFMNILAGY 118

Query:    86 RSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQL 145
             R +G+ GQIL NG +R +  FR++SCYI QDD L P LT+   M +     S N +   L
Sbjct:   119 RESGMKGQILVNGRARELRTFRKMSCYIMQDDMLLPHLTVLEAMMV-----SANLK---L 170

Query:   146 SGGQKKRLSIALELINNPRVMFLDEPTTSN-PNDQKKRLSIALELINNPRVMFLDEPTTG 204
             S  Q+ +  +  E++    +M      T+     Q+KRL+IALEL+NNP VMF DEPT+G
Sbjct:   171 SEKQEVKKELVTEILTALGLMSCSHTRTALLSGGQRKRLAIALELVNNPPVMFFDEPTSG 230

Query:   205 LDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
             LDS SC Q + L+K ++Q GRTIICTIHQPSA LF+MFD++Y+LS GQC+++G    L+ 
Sbjct:   231 LDSASCCQVVSLMKSLAQGGRTIICTIHQPSAKLFEMFDKLYILSQGQCIFKGVVTNLIP 290

Query:   265 YLSSVNLPCPKYHNPADFVIELASGEYGVDNI-------NAMVEQAQNDVKPDXXXXXXX 317
             YL  + L CP YHNPADF+IE+ASGEYG  N        N +   A+    P+       
Sbjct:   291 YLKGLGLHCPTYHNPADFIIEVASGEYGDLNPMLFRAVQNGLCAMAEKKSSPEKNEVPTP 350

Query:   318 --HCTYSNQILQD----TSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLF 371
                C      ++     TS   Q  +L  R  L + RD+ LTHLR + ++ + +++G+L+
Sbjct:   351 CPPCPQEVDPIESHTFATSTLTQFCILFKRTFLSILRDTVLTHLRFVSHVVIGVLIGLLY 410

Query:   372 QNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVS 431
              + G  AS V  N   LF  ++  +  ++M  +LTFP+EM++ ++EH N WYSLKAYY++
Sbjct:   411 LHIGNDASKVFNNTGCLFFSMLFLMFAALMPTVLTFPLEMAVFMREHLNYWYSLKAYYLA 470

Query:   432 VNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNV 491
               + D+P    C +++ +I+Y +TGQP E +RF +F+  +     +AQS+G ++GA  N 
Sbjct:   471 KTMADVPFQVVCPVVYCSIMYWMTGQPAETSRFLLFSALATATALVAQSLGLLIGAASNS 530

Query:   492 VN-GTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTL 550
             +   TFVGPV  +P+++FSGF VS   IP Y++W S LSY+RYG EG +  IYG+DR+ L
Sbjct:   531 LQVATFVGPVTAIPVLLFSGFFVSFKTIPTYLQWSSYLSYVRYGFEGVILTIYGMDREDL 590

Query:   551 QCDELYCHYKEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIKVMR 606
              C E +C ++ P+  L+ +       +   + L    + ++L+AY  L +R+K  R
Sbjct:   591 TCLEEHCPFQNPQSILRALDVEDAKLYLDFLVLGIFFLALRLLAYLVLRYRVKSER 646

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-080215-10 abcg4b "ATP-binding cassette, sub-family G (WHITE), member 4b" [Danio rerio (taxid:7955)]

 Score = 1207 (429.9 bits), Expect = 9.2e-123, P = 9.2e-123
 Identities = 244/595 (41%), Positives = 370/595 (62%)

Query:    27 IEIKFKDLTYTVSTGLGFKQEP-KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY 85
             +E++FK+L YT+  G  +K++  K +LK L G+F S +LI IMGPSGAGKS+L+++L+GY
Sbjct:    57 VELEFKELCYTIREGPWWKKQGYKALLKCLSGKFSSRELIGIMGPSGAGKSTLMNILAGY 116

Query:    86 RSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQL 145
             R  G+TGQIL NG  R+   FR++SCYI Q+D+L P L+++  M +     S N + ++ 
Sbjct:   117 RETGMTGQILVNGKLRDPRTFRKMSCYIMQEDKLLPHLSVQEAMMV-----SANLKLNES 171

Query:   146 SGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL 205
             S  +K+ +   L  +     +     T S    Q KRL+IALEL+NNP VMF DEPT+GL
Sbjct:   172 SEVKKELIKEILTALGLHECVHTR--TVSLSGGQCKRLAIALELVNNPPVMFFDEPTSGL 229

Query:   206 DSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNY 265
             DS SC Q + L+K ++Q GRTIICTIHQPSA LF+MFD++Y+LS GQC+Y+G+   L+ Y
Sbjct:   230 DSASCFQVVSLMKSLAQGGRTIICTIHQPSAKLFEMFDKLYILSQGQCIYKGSVPYLIPY 289

Query:   266 LSSVNLPCPKYHNPADFVIELASGEYGVDN---INAM------VEQAQNDVKPDXXXXXX 316
             L  + L CP YHNPADF+IE+ASGEYG  N     A+      +E+  N +         
Sbjct:   290 LRGLGLHCPTYHNPADFIIEVASGEYGDLNPVLFEAVQGGMCALEEKCNCIDKTTVTSCA 349

Query:   317 XHCTYSNQILQD----TSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQ 372
               C      ++     TS   Q  +L  R  + + RD  LTHLR++ +I + +++G+L+ 
Sbjct:   350 AKCVKDPGHVESHTFATSSLTQFCILFKRTFITICRDQVLTHLRLMSHISIGVLIGLLYL 409

Query:   373 NSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSV 432
             N G  AS V  N   LF  ++  +  ++M  +LTFP+EM++ ++EH N WYSLKAYY++ 
Sbjct:   410 NIGNDASKVFNNTGFLFFSMLFLMFGALMPTVLTFPLEMAVFLREHLNYWYSLKAYYLAK 469

Query:   433 NLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVV 492
              + DIP    C +++ +IVY +T QP E +R+ +F   S+    +AQS+G +VGA    +
Sbjct:   470 TMADIPFQVLCPIMYCSIVYWMTEQPPEASRYLLFLALSICTALVAQSLGLLVGAASTSL 529

Query:   493 N-GTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQ 551
                TFVGPV  +P+++FSGF V+ + IP+Y++W S +SY+RYG EG + +IYG++R  L+
Sbjct:   530 QVATFVGPVTGIPVLLFSGFFVNFDTIPEYLQWSSYVSYVRYGFEGVILSIYGMNRTELE 589

Query:   552 CDELYCHYKEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIKVMR 606
             C    C ++ P++ LQ +       +   + L    ++++L  Y  L ++IK  R
Sbjct:   590 CPGRVCKFQRPEEVLQLLDVEDAKLYMDFIVLGIFFVILRLATYVVLRYKIKSER 644

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9H172 ABCG4 "ATP-binding cassette sub-family G member 4" [Homo sapiens (taxid:9606)]

 Score = 1205 (429.2 bits), Expect = 1.5e-122, P = 1.5e-122
 Identities = 244/596 (40%), Positives = 366/596 (61%)

Query:    27 IEIKFKDLTYTVSTGLGFKQEP-KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY 85
             ++I+F +L+Y+V  G  +++   K +LK L G+F   +LI IMGPSGAGKS+ +++L+GY
Sbjct:    59 VDIEFVELSYSVREGPCWRKRGYKTLLKCLSGKFCRRELIGIMGPSGAGKSTFMNILAGY 118

Query:    86 RSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQL 145
             R +G+ GQIL NG  R +  FR++SCYI QDD L P LT+   M +     S N +   L
Sbjct:   119 RESGMKGQILVNGRPRELRTFRKMSCYIMQDDMLLPHLTVLEAMMV-----SANLK---L 170

Query:   146 SGGQKKRLSIALELINNPRVMFLDEPTTSN-PNDQKKRLSIALELINNPRVMFLDEPTTG 204
             S  Q+ +  +  E++    +M      T+     Q+KRL+IALEL+NNP VMF DEPT+G
Sbjct:   171 SEKQEVKKELVTEILTALGLMSCSHTRTALLSGGQRKRLAIALELVNNPPVMFFDEPTSG 230

Query:   205 LDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
             LDS SC Q + L+K ++Q GRTIICTIHQPSA LF+MFD++Y+LS GQC+++G    L+ 
Sbjct:   231 LDSASCFQVVSLMKSLAQGGRTIICTIHQPSAKLFEMFDKLYILSQGQCIFKGVVTNLIP 290

Query:   265 YLSSVNLPCPKYHNPADFVIELASGEYGVDNI-------NAMVEQAQNDVKPDXXXXXXX 317
             YL  + L CP YHNPADF+IE+ASGEYG  N        N +   A+    P+       
Sbjct:   291 YLKGLGLHCPTYHNPADFIIEVASGEYGDLNPMLFRAVQNGLCAMAEKKSSPEKNEVPAP 350

Query:   318 --HCTYSNQILQD----TSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLF 371
                C      ++     TS   Q  +L  R  L + RD+ LTHLR + ++ + +++G+L+
Sbjct:   351 CPPCPPEVDPIESHTFATSTLTQFCILFKRTFLSILRDTVLTHLRFMSHVVIGVLIGLLY 410

Query:   372 QNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVS 431
              + G+ AS V  N   LF  ++  +  ++M  +LTFP+EM++ ++EH N WYSLKAYY++
Sbjct:   411 LHIGDDASKVFNNTGCLFFSMLFLMFAALMPTVLTFPLEMAVFMREHLNYWYSLKAYYLA 470

Query:   432 VNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNV 491
               + D+P    C +++ +IVY +TGQP E +RF +F+  +     +AQS+G ++GA  N 
Sbjct:   471 KTMADVPFQVVCPVVYCSIVYWMTGQPAETSRFLLFSALATATALVAQSLGLLIGAASNS 530

Query:   492 VN-GTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTL 550
             +   TFVGPV  +P+++FSGF VS   IP Y++W S LSY+RYG EG +  IYG++R  L
Sbjct:   531 LQVATFVGPVTAIPVLLFSGFFVSFKTIPTYLQWSSYLSYVRYGFEGVILTIYGMERGDL 590

Query:   551 QCDELYCHYKEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIKVMR 606
              C E  C ++EP+  L+ +       +   + L    + ++L+AY  L +R+K  R
Sbjct:   591 TCLEERCPFREPQSILRALDVEDAKLYMDFLVLGIFFLALRLLAYLVLRYRVKSER 646

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0017127 "cholesterol transporter activity" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0033344 "cholesterol efflux" evidence=TAS

UNIPROTKB|F1SAH2 ABCG4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1204 (428.9 bits), Expect = 1.9e-122, P = 1.9e-122
 Identities = 243/596 (40%), Positives = 366/596 (61%)

Query:    27 IEIKFKDLTYTVSTGLGFKQEP-KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY 85
             ++I+F +L+Y+V  G  +++   K +LK L G+F   +LI IMGPSGAGKS+ +++L+GY
Sbjct:    59 VDIEFVELSYSVREGPCWRKRGYKTLLKCLSGKFCRRELIGIMGPSGAGKSTFMNILAGY 118

Query:    86 RSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQL 145
             R +G+ GQIL NG  R +  FR++SCYI QDD L P LT+   M +     S N + S+ 
Sbjct:   119 RESGMKGQILVNGRPRELRTFRKMSCYIMQDDMLLPHLTVLEAMMV-----SANLKLSEK 173

Query:   146 SGGQKKRLSIALELINNPRVMFLDEPTTSN-PNDQKKRLSIALELINNPRVMFLDEPTTG 204
                +K+   +  E++    +M      T+     Q+KRL+IALEL+NNP VMF DEPT+G
Sbjct:   174 KEVKKE---LVTEILTALGLMSCSHTRTALLSGGQRKRLAIALELVNNPPVMFFDEPTSG 230

Query:   205 LDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
             LDS SC Q + L+K ++Q GRTIICTIHQPSA LF+MFD++Y+LS GQC+++G    L+ 
Sbjct:   231 LDSASCFQVVSLMKSLAQGGRTIICTIHQPSAKLFEMFDKLYILSQGQCIFKGVVTNLIP 290

Query:   265 YLSSVNLPCPKYHNPADFVIELASGEYGVDNI-------NAMVEQAQNDVKPDXXXXXXX 317
             YL  + L CP YHNPADF+IE+ASGEYG  N        N +   A+    P+       
Sbjct:   291 YLKGLGLHCPTYHNPADFIIEVASGEYGDLNPLLFRAVQNGLCAMAEKKSSPEKNEVSEP 350

Query:   318 --HCTYSNQILQD----TSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLF 371
                C      ++     TS   Q  +L  R  L + RD+ LTHLR + ++ + +++G+L+
Sbjct:   351 CPPCPPEVDPIESHTFATSTLTQFCILFKRTFLSILRDTVLTHLRFVSHVVIGVLIGLLY 410

Query:   372 QNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVS 431
              + G+ AS V  N   LF  ++  +  ++M  +LTFP+EM++ ++EH N WYSLKAYY++
Sbjct:   411 LHIGDDASKVFNNTGCLFFSMLFLMFAALMPTVLTFPLEMAVFMREHLNYWYSLKAYYLA 470

Query:   432 VNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNV 491
               + D+P    C +++ +IVY +TGQP E +RF +F+  +     +AQS+G ++GA  N 
Sbjct:   471 KTMADVPFQVVCPVVYCSIVYWMTGQPAETSRFLLFSALATATALVAQSLGLLIGAASNS 530

Query:   492 VN-GTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTL 550
             +   TFVGPV  +P+++FSGF VS   IP Y++W S LSY+RYG EG +  IYG++R  L
Sbjct:   531 LQVATFVGPVTAIPVLLFSGFFVSFKTIPTYLQWSSYLSYVRYGFEGVILTIYGMERGDL 590

Query:   551 QCDELYCHYKEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIKVMR 606
              C E  C ++EP+  L+ +       +   + L    + ++L+AY  L +R+K  R
Sbjct:   591 TCLEERCPFREPQSILRALDVEDAKLYMDFLVLGIFFLALRLLAYLVLRYRVKSER 646

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-050517-39 abcg4a "ATP-binding cassette, sub-family G (WHITE), member 4a" [Danio rerio (taxid:7955)]

 Score = 1195 (425.7 bits), Expect = 1.7e-121, P = 1.7e-121
 Identities = 242/598 (40%), Positives = 369/598 (61%)

Query:    27 IEIKFKDLTYTVSTGLGFKQEP-KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY 85
             ++++F +L+YT+  G  +++   K +LK L G+F S +LI IMGPSGAGKS+L+++L+GY
Sbjct:    68 VDLEFTELSYTIREGPCWRRRGFKALLKCLSGKFCSRELIGIMGPSGAGKSTLMNILAGY 127

Query:    86 RSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQL 145
             R  G+ GQIL NG  R++  FR++SCYI QDD L P LT    M +     S N + ++ 
Sbjct:   128 RETGMKGQILVNGRPRDLRTFRKMSCYIMQDDMLLPHLTTREAMMV-----SANLKLNEN 182

Query:   146 SGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL 205
                +K+ ++  L  +           T S    Q KRL+IALEL+NNP VMF DEPT+GL
Sbjct:   183 MEVKKELVNEILTALGLQECA--QTRTISLSGGQCKRLAIALELVNNPPVMFFDEPTSGL 240

Query:   206 DSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNY 265
             DS SC Q + L+K ++Q GRTIICTIHQPSA LF+MFD++Y+LS GQC+Y+G    L+ Y
Sbjct:   241 DSASCFQVVSLMKSLAQGGRTIICTIHQPSAKLFEMFDKLYILSQGQCIYKGTVPYLIPY 300

Query:   266 LSSVNLPCPKYHNPADFVIELASGEYGVDNINAMVEQA------QNDVKPDXXXXXXXHC 319
             L ++ L CP YHNPADF+IE+ASGEYG  ++N ++ +A       +D K +         
Sbjct:   301 LKNLGLHCPTYHNPADFIIEVASGEYG--DLNPVLFEAVQGGLCSDDSKKNSSDKNDPTT 358

Query:   320 TYSNQILQDTSYSN----------QLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGV 369
             +  +Q   D+ Y            Q  +L  R  + + RD  LTHLR++ ++ + +++G+
Sbjct:   359 SCPSQCYPDSGYIEKHTFATSTLTQFCILFKRTFITICRDVVLTHLRVMSHLCIGVLIGL 418

Query:   370 LFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYY 429
             L+ N G  AS V  N   LF  ++  +  ++M  +LTFP+EM + I+EH N WYSLKAYY
Sbjct:   419 LYLNIGNDASKVFNNTGFLFFSMLFLMFAALMPTVLTFPLEMGVFIREHLNYWYSLKAYY 478

Query:   430 VSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVF 489
             ++  + DIP    C +++ +IVY +T QP E  R+ +F   S     +AQS+G ++GA  
Sbjct:   479 LAKTMADIPFQVICPIMYCSIVYWMTEQPPEAGRYLLFMALSTSTALVAQSLGLLIGAAS 538

Query:   490 NVVN-GTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRK 548
               +   TFVGPV  +P+++FSGF V+ + IPKY++W S +SY+RYG EG + +IYG++R 
Sbjct:   539 TSLQVATFVGPVSAIPVLLFSGFFVNFDTIPKYLQWSSYVSYVRYGFEGVILSIYGMNRS 598

Query:   549 TLQCDELYCHYKEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIKVMR 606
              L+C  + C +++P++ LQ +       +   + L    +V++L  YF L +++K  R
Sbjct:   599 ELECPGIVCKFQKPEEVLQLLDVEDAKLYVDFMVLGVFFLVLRLATYFVLRYKVKSER 656

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9H172	ABCG4_HUMAN	No assigned EC number	0.3977	0.9768	0.9164	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	606
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	1e-134
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	6e-70
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	2e-58
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	5e-54
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	9e-51
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	2e-48
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	3e-37
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	4e-37
pfam01061	210	pfam01061, ABC2_membrane, ABC-2 type transporter	1e-36
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	4e-35
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	2e-28
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	1e-26
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	8e-26
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	1e-25
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	1e-25
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	2e-25
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	2e-25
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	5e-25
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	8e-25
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	1e-24
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	3e-24
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	1e-23
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	2e-23
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	3e-22
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	1e-21
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	4e-21
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	5e-21
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	8e-21
COG4988	559	COG4988, CydD, ABC-type transport system involved	9e-21
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	2e-20
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	3e-20
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	4e-20
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	4e-20
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	4e-20
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	4e-19
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	5e-19
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	6e-19
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	6e-19
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	6e-19
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	6e-19
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	9e-19
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	4e-18
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	5e-18
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	6e-18
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	2e-17
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	2e-17
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	2e-17
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	3e-17
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	3e-17
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	3e-17
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	4e-17
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	5e-17
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	6e-17
COG1123	539	COG1123, COG1123, ATPase components of various ABC	9e-17
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	9e-17
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	1e-16
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	1e-16
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	2e-16
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	2e-16
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	3e-16
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	3e-16
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	4e-16
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	4e-16
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	4e-16
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	5e-16
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	5e-16
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	6e-16
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	7e-16
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	7e-16
pfam00005	119	pfam00005, ABC_tran, ABC transporter	1e-15
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	1e-15
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	1e-15
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	1e-15
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	1e-15
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	1e-15
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	1e-15
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	2e-15
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	3e-15
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	3e-15
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	4e-15
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	5e-15
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	5e-15
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	6e-15
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	7e-15
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	7e-15
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	8e-15
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	9e-15
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	1e-14
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	1e-14
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	1e-14
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	1e-14
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	1e-14
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	2e-14
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	2e-14
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	2e-14
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	2e-14
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	2e-14
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	3e-14
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	4e-14
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	8e-14
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	8e-14
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	8e-14
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	1e-13
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	1e-13
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	1e-13
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	2e-13
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	2e-13
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	3e-13
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	3e-13
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	4e-13
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	6e-13
COG4133	209	COG4133, CcmA, ABC-type transport system involved	7e-13
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	8e-13
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	1e-12
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	1e-12
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	1e-12
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	2e-12
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	2e-12
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	2e-12
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	3e-12
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	3e-12
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	3e-12
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	4e-12
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	4e-12
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	4e-12
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	4e-12
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	6e-12
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	7e-12
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	1e-11
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	1e-11
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	1e-11
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	1e-11
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	1e-11
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	2e-11
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	2e-11
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	2e-11
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	2e-11
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	2e-11
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	2e-11
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	3e-11
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	3e-11
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	3e-11
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	3e-11
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	4e-11
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	5e-11
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	5e-11
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	6e-11
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	7e-11
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	7e-11
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	8e-11
COG4598	256	COG4598, HisP, ABC-type histidine transport system	8e-11
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	8e-11
COG1123	539	COG1123, COG1123, ATPase components of various ABC	9e-11
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	9e-11
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	1e-10
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	1e-10
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	1e-10
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	2e-10
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	2e-10
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	2e-10
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	2e-10
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	2e-10
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	3e-10
COG4987	573	COG4987, CydC, ABC-type transport system involved	3e-10
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	4e-10
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	4e-10
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	4e-10
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	4e-10
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	4e-10
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	4e-10
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	5e-10
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	5e-10
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	5e-10
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	5e-10
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	6e-10
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	6e-10
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	7e-10
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	8e-10
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	8e-10
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	8e-10
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	8e-10
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	9e-10
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	9e-10
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	1e-09
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	2e-09
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	2e-09
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	2e-09
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	2e-09
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	2e-09
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	3e-09
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	3e-09
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	3e-09
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	4e-09
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	4e-09
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	4e-09
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	4e-09
cd03240	204	cd03240, ABC_Rad50, ATP-binding cassette domain of	4e-09
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	4e-09
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	4e-09
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	5e-09
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	5e-09
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	6e-09
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	6e-09
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	7e-09
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	8e-09
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	1e-08
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	1e-08
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	1e-08
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	1e-08
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	1e-08
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	1e-08
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	1e-08
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	2e-08
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	2e-08
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	2e-08
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	2e-08
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	2e-08
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	2e-08
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	2e-08
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	2e-08
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	2e-08
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	3e-08
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	3e-08
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	3e-08
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	4e-08
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	4e-08
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	4e-08
cd03227	162	cd03227, ABC_Class2, ATP-binding cassette domain o	6e-08
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	6e-08
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	6e-08
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	7e-08
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	8e-08
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	9e-08
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	9e-08
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	9e-08
PRK15112	267	PRK15112, PRK15112, antimicrobial peptide ABC syst	1e-07
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	1e-07
cd03238	176	cd03238, ABC_UvrA, ATP-binding cassette domain of	1e-07
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	1e-07
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	1e-07
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	2e-07
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	2e-07
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	2e-07
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	2e-07
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	2e-07
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	3e-07
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	3e-07
COG5265	497	COG5265, ATM1, ABC-type transport system involved	3e-07
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	3e-07
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	4e-07
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	4e-07
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	4e-07
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	4e-07
PRK14243	264	PRK14243, PRK14243, phosphate transporter ATP-bind	4e-07
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	5e-07
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	6e-07
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	6e-07
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	6e-07
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	6e-07
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	7e-07
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	8e-07
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	1e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-06
CHL00131	252	CHL00131, ycf16, sulfate ABC transporter protein;	1e-06
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	1e-06
cd03279	213	cd03279, ABC_sbcCD, ATP-binding cassette domain of	2e-06
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	2e-06
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	2e-06
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	2e-06
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	2e-06
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	2e-06
PRK13547	272	PRK13547, hmuV, hemin importer ATP-binding subunit	2e-06
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	3e-06
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	3e-06
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	3e-06
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	4e-06
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	4e-06
COG4170	330	COG4170, SapD, ABC-type antimicrobial peptide tran	4e-06
PRK13540	200	PRK13540, PRK13540, cytochrome c biogenesis protei	4e-06
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	4e-06
PRK14259	269	PRK14259, PRK14259, phosphate ABC transporter ATP-	5e-06
COG2401	593	COG2401, COG2401, ABC-type ATPase fused to a predi	6e-06
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	6e-06
PRK13645	289	PRK13645, cbiO, cobalt transporter ATP-binding sub	7e-06
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	7e-06
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	7e-06
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	7e-06
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	1e-05
TIGR01194	555	TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo	1e-05
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	1e-05
PRK15093	330	PRK15093, PRK15093, antimicrobial peptide ABC tran	1e-05
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	2e-05
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	2e-05
COG0842	286	COG0842, COG0842, ABC-type multidrug transport sys	2e-05
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	3e-05
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	4e-05
TIGR03415	382	TIGR03415, ABC_choXWV_ATP, choline ABC transporter	5e-05
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	5e-05
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	6e-05
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	6e-05
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	7e-05
cd03270	226	cd03270, ABC_UvrA_I, ATP-binding cassette domain I	7e-05
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	8e-05
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	8e-05
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	9e-05
PRK10418	254	PRK10418, nikD, nickel transporter ATP-binding pro	9e-05
smart00382	148	smart00382, AAA, ATPases associated with a variety	1e-04
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	1e-04
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	1e-04
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	1e-04
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	1e-04
PRK11650	356	PRK11650, ugpC, glycerol-3-phosphate transporter A	1e-04
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	2e-04
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	2e-04
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	2e-04
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	2e-04
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	3e-04
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	3e-04
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	3e-04
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	3e-04
PRK14263	261	PRK14263, PRK14263, phosphate ABC transporter ATP-	3e-04
COG4615	546	COG4615, PvdE, ABC-type siderophore export system,	3e-04
PRK09580	248	PRK09580, sufC, cysteine desulfurase ATPase compon	4e-04
PRK00635	1809	PRK00635, PRK00635, excinuclease ABC subunit A; Pr	6e-04
cd03222	177	cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett	7e-04
pfam13304	256	pfam13304, AAA_21, AAA domain	7e-04
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	0.001
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	0.001
pfam03193	161	pfam03193, DUF258, Protein of unknown function, DU	0.001
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	0.002
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	0.002
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	0.002
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	0.002
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	0.002
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	0.002
PRK13545	549	PRK13545, tagH, teichoic acids export protein ATP-	0.002
PRK10522	547	PRK10522, PRK10522, multidrug transporter membrane	0.002
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	0.003
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	0.003
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	0.003
cd03271	261	cd03271, ABC_UvrA_II, ATP-binding cassette domain	0.003
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	0.003
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	0.004
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	0.004
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	0.004
COG0178	935	COG0178, UvrA, Excinuclease ATPase subunit [DNA re	0.004

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score =  405 bits (1042), Expect = e-134
 Identities = 180/639 (28%), Positives = 299/639 (46%), Gaps = 72/639 (11%)

Query: 12  LSSSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPS 71
           L+ S   + +      +  +K L   +      ++  K +LKN+ G     +L+A+MG S
Sbjct: 1   LTYSWRNSDVFGRVAQDGSWKQLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSS 60

Query: 72  GAGKSSLLDVLSGYRSNGVTGQ--ILTNGHSRNINAFRRVSCYIQQDDRLQPLLT----- 124
           GAGK++L++ L+     GV G   +L NG   +    R +S Y+QQDD   P LT     
Sbjct: 61  GAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHL 120

Query: 125 --------------------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPR 164
                               ++ V+  LGL +  NTR      G+ K LS          
Sbjct: 121 MFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGV--PGRVKGLSGG-------- 170

Query: 165 VMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQG 224
                         ++KRL+ A EL+ +P ++F DEPT+GLDS      +++LK ++Q+G
Sbjct: 171 --------------ERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKG 216

Query: 225 RTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVI 284
           +TIICTIHQPS+ LF++FD++ L++ G+  Y G+ DQ V + S +  PCP+ +NPADF +
Sbjct: 217 KTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYV 276

Query: 285 ELASGEYG-----VDNINAMVEQ-------AQNDVKPDKKTKKT----KHCTYSNQILQD 328
           ++ +   G      + I  + +            V  +  + K     K       I  +
Sbjct: 277 QVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYN 336

Query: 329 TSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLL 388
            S+  Q   LL R  L V RD  L  +R+I  +  A+++G+++   G     V      L
Sbjct: 337 ASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGAL 396

Query: 389 FSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFT 448
           F  L +    ++   I  F  E+ + ++E  +  Y + AY+++  + ++P+      LFT
Sbjct: 397 FLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFT 456

Query: 449 TIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVN-GTFVGPVLVVPMMM 507
           +I Y + G     T F  F     LV  +A S GY++   F+  +    VGP  V+P ++
Sbjct: 457 SITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLL 516

Query: 508 FSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRK---TLQCDELYCHYKEPKK 564
           F GF ++ + IP Y +W S LS+ RYG EG +   +        T       C       
Sbjct: 517 FGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGE-V 575

Query: 565 FLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIK 603
            L+T+S  + + +   + LV ++   +L+AYF L  RI+
Sbjct: 576 ILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIRIR 614

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score =  223 bits (572), Expect = 6e-70
 Identities = 94/234 (40%), Positives = 138/234 (58%), Gaps = 42/234 (17%)

Query: 26  RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY 85
            + + F++LT TV +        K +LKN+ G+    +L AIMGPSGAGKS+LL+ L+G 
Sbjct: 1   GVTLSFRNLTVTVKSSPSKSG--KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGR 58

Query: 86  RSN-GVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTI-ENVMSLLGLDESQNTRSS 143
           R+  GV+G++L NG   +  +FR++  Y+ QDD L P LT+ E +M    L         
Sbjct: 59  RTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL--------R 110

Query: 144 QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTT 203
            LSGG                              ++KR+SIALEL++NP ++FLDEPT+
Sbjct: 111 GLSGG------------------------------ERKRVSIALELVSNPSLLFLDEPTS 140

Query: 204 GLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
           GLDS S  Q + LL+ ++  GRTIIC+IHQPS+ +F++FD++ LLS G+ +Y G
Sbjct: 141 GLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score =  207 bits (527), Expect = 2e-58
 Identities = 168/638 (26%), Positives = 295/638 (46%), Gaps = 78/638 (12%)

Query: 27  IEIKFKDLTYTV------STG------LGFKQEPKD---------VLKNLCGRFPSNQLI 65
           I +KF D+ Y V      + G      LG K +  D         +L  + G     +++
Sbjct: 38  ITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEIL 97

Query: 66  AIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLT 124
           A++GPSG+GKS+LL+ L+G  + N  TG IL N         +R   ++ QDD L P LT
Sbjct: 98  AVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTG-FVTQDDILYPHLT 156

Query: 125 IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSN------PND 178
           +   +    L     + + Q      +++ +A  +I+   +   +     N         
Sbjct: 157 VRETLVFCSLLRLPKSLTKQ------EKILVAESVISELGLTKCENTIIGNSFIRGISGG 210

Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATL 238
           ++KR+SIA E++ NP ++ LDEPT+GLD+ +  + +  L  ++Q+G+TI+ ++HQPS+ +
Sbjct: 211 ERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRV 270

Query: 239 FQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASGEYGVDNINA 298
           +QMFD V +LS G+CL+ G     + Y  SV        NPADF+++LA+   GV   + 
Sbjct: 271 YQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLAN---GVCQTDG 327

Query: 299 MVEQAQNDVKPDKKTK-------KTKHCTYSNQILQD---------------------TS 330
           + E+ + +VK             K K     +   Q                      ++
Sbjct: 328 VSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISIST 387

Query: 331 YSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFS 390
           + NQ  +LL R  LK ++  +   LR+   I  AL+ G+++ +S      V     LLF 
Sbjct: 388 WFNQFSILLQRS-LKERKHESFNTLRVFQVIAAALLAGLMWWHSD--FRDVQDRLGLLFF 444

Query: 391 ILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTI 450
           I I   +     ++  FP E +I +KE  +  Y+L +Y+++  + D+P+      +F T+
Sbjct: 445 ISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTV 504

Query: 451 VYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVNGTFVGPVLVVPMMMF-- 508
            Y + G   EL  F +     L  V ++Q +G  +GA   +++      ++ V M+ F  
Sbjct: 505 TYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAA--IMDAKKASTIVTVTMLAFVL 562

Query: 509 SGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKT---LQCDELYCHYKEPKKF 565
           +G G  ++ +P  M W   +S   Y     +   YG  ++    L C   +   +   KF
Sbjct: 563 TG-GFYVHKLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKF 621

Query: 566 LQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIK 603
           ++       +  +S   L+F+ +  +L+AY  L  RIK
Sbjct: 622 VEEDVAGQISPATSVSVLIFMFVGYRLLAYLALR-RIK 658

Length = 659

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score =  182 bits (463), Expect = 5e-54
 Identities = 85/231 (36%), Positives = 128/231 (55%), Gaps = 44/231 (19%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           + +K+L YTV      K   + +L N+ G      L A+MG SGAGK++LLDVL+G ++ 
Sbjct: 4   LTWKNLNYTVPV----KGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTA 59

Query: 89  G-VTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSG 147
           G +TG+IL NG   + N F+R + Y++Q D   P LT+   +            S+ L G
Sbjct: 60  GVITGEILINGRPLDKN-FQRSTGYVEQQDVHSPNLTVREALRF----------SALLRG 108

Query: 148 GQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDS 207
                LS+                       Q+KRL+I +EL   P ++FLDEPT+GLDS
Sbjct: 109 -----LSVE----------------------QRKRLTIGVELAAKPSILFLDEPTSGLDS 141

Query: 208 QSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL-SGGQCLYQG 257
           Q+    ++ LK ++  G+ I+CTIHQPSA++F+ FD++ LL  GG+ +Y G
Sbjct: 142 QAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score =  189 bits (481), Expect = 9e-51
 Identities = 171/684 (25%), Positives = 277/684 (40%), Gaps = 138/684 (20%)

Query: 21   LETADRIEIKF-KDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL 79
            +E     +I   ++LTY V      K+E + +L N+ G      L A+MG SGAGK++LL
Sbjct: 751  MEKESGEDIFHWRNLTYEV----KIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLL 806

Query: 80   DVLSGYRSNGV--TGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDES 137
            +VL+   + GV   G  L NG   + ++F+R   Y+QQ D   P  T+        L  S
Sbjct: 807  NVLAERVTTGVITGGDRLVNGRPLD-SSFQRSIGYVQQQDLHLPTSTVRE-----SLRFS 860

Query: 138  QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT----------SNPN-DQKKRLSIA 186
               R       Q K +S + ++     V+ L E  +             N +Q+KRL+I 
Sbjct: 861  AYLR-------QPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIG 913

Query: 187  LELINNPR-VMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQV 245
            +EL+  P+ ++FLDEPT+GLDSQ+     KL++ ++  G+ I+CTIHQPSA LF+ FD++
Sbjct: 914  VELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRL 973

Query: 246  YLLS-GGQCLYQGATDQ----LVNYLSSVNLP-CPKYHNPADFVIE-------------- 285
             LL  GGQ +Y G   +    ++NY      P CP+  NPA++++E              
Sbjct: 974  LLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQDY 1033

Query: 286  ----LASGEYG-----VDNINAMVEQAQNDVKPDKKTKKTKHCTYSNQILQDTSYSNQLG 336
                  S EY      +D + A + +A++D  PD  +K      Y+       S   Q  
Sbjct: 1034 HEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSK------YA------ASLWYQFK 1081

Query: 337  VLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHV 396
            ++L R   +  R     + +  + IF AL +G  F   G     +    N +F++ +  V
Sbjct: 1082 LVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGL---QNQMFAVFMATV 1138

Query: 397  MTSMMLNILTFPM---EMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVY- 452
            + + ++     P         ++E  +R +S  A+  +   ++IP       +F  I Y 
Sbjct: 1139 LFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYY 1198

Query: 453  PL--------TGQPMELTRFTMFNCTSLLVVF--IAQSVGYM--VGAVFNVVNGTFVGPV 500
            P+        TGQ  E         T   + F  + Q V           V+        
Sbjct: 1199 PVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFT-- 1256

Query: 501  LVVPMMMFSGFGVSINDIPKY---MRWGSELSYLRYGL---------------------- 535
                 + F G     + +P +   M   S  +YL   L                      
Sbjct: 1257 ---MCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNP 1313

Query: 536  ----------EGY--VAAIYGLD-RKTLQCDELYCHYKEPKKFLQTVSQPSDNFWSSSVT 582
                      + Y   A  Y L+   T  C   +C Y     FL+ +S      W  +  
Sbjct: 1314 PSGQTCGEYMKPYLENAGGYLLNPNATDSCS--FCQYSYTNDFLEPISSKYSGRW-RNFG 1370

Query: 583  LVFILIVMKLIAYFFLSWRIKVMR 606
            +    I   +IA  F  W  +V +
Sbjct: 1371 IFIAFIFFNIIATVFFYWLARVPK 1394

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score =  168 bits (427), Expect = 2e-48
 Identities = 76/224 (33%), Positives = 124/224 (55%), Gaps = 14/224 (6%)

Query: 41  GLGFKQEPK--DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG--VTGQILT 96
           GL  K   K   +L ++     S Q++AI+G SG+GK++LLD +SG    G   +GQIL 
Sbjct: 10  GLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILF 69

Query: 97  NGHSRNINAFRRVSCYIQQDDRLQPLLTIENV---MSLLGLDESQNTRSSQLSGGQKKRL 153
           NG  R  + F++   Y++QDD L P LT+       ++L L    +    +         
Sbjct: 70  NGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLR 129

Query: 154 SIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQC 213
            +AL  I    V  +          +++R+SIA++L+ +P+V+ LDEPT+GLDS +    
Sbjct: 130 DLALTRIGGNLVKGIS-------GGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNL 182

Query: 214 IKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
           +  L  ++++ R +I TIHQP + LF++FD++ LLS G+ +Y G
Sbjct: 183 VSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score =  140 bits (354), Expect = 3e-37
 Identities = 68/295 (23%), Positives = 123/295 (41%), Gaps = 57/295 (19%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS--RNINAF 106
           K  L  +       ++  ++GP+GAGK++LL +L+G      +G+IL  G+   +     
Sbjct: 18  KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAG-LLKPTSGEILVLGYDVVKEPAKV 76

Query: 107 RRVSCYIQQDDRLQPLLT----------------------IENVMSLLGLDESQNTRSSQ 144
           RR   Y+ Q+  L P LT                      IE ++ L GL++  N +   
Sbjct: 77  RRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRT 136

Query: 145 LSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTG 204
           LSGG K+RLSIAL L+++P ++ LDEPT                              +G
Sbjct: 137 LSGGMKQRLSIALALLHDPELLILDEPT------------------------------SG 166

Query: 205 LDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
           LD +S  +  +LL+ ++++G   I           ++ D+V +L+ G+ + +G  ++L  
Sbjct: 167 LDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226

Query: 265 YLSSVNLPC-PKYHNPADFVIELASGEYGVDNINAMVEQA-QNDVKPDKKTKKTK 317
                 +            ++E      G + +  ++E   +  VK +    K  
Sbjct: 227 KFGGKGVIELEPERLELAELLEGLKLVKGEEELAEILEALLEEGVKIESIEVKEP 281

Length = 293

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score =  148 bits (374), Expect = 4e-37
 Identities = 142/538 (26%), Positives = 248/538 (46%), Gaps = 63/538 (11%)

Query: 31   FKDLTYTVSTGLGFKQE--PKD---VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY 85
            F D+ Y V      K++   +D   +L+ + G F    L A+MG SGAGK++L+DVL+G 
Sbjct: 870  FDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGR 929

Query: 86   RSNG-VTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQ 144
            ++ G + G I  +G  +    F R+S Y +Q+D   P +T+    SL+    S   R  +
Sbjct: 930  KTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRE--SLI---YSAFLRLPK 984

Query: 145  LSGGQKKRLSI--ALELI--NNPRVMFLDEP-TTSNPNDQKKRLSIALELINNPRVMFLD 199
                ++K + +   +EL+  +N +   +  P  T    +Q+KRL+IA+EL+ NP ++F+D
Sbjct: 985  EVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMD 1044

Query: 200  EPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS-GGQCLYQGA 258
            EPT+GLD+++ +  ++ ++     GRT++CTIHQPS  +F+ FD++ L+  GGQ +Y G 
Sbjct: 1045 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGP 1104

Query: 259  TDQ----LVNYLSSV-NLP-CPKYHNPADFVIELAS----GEYGVD-----NINAMVEQA 303
              +    ++ Y  ++  +P   + +NPA +++E++S     + G+D       +++ ++ 
Sbjct: 1105 LGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRN 1164

Query: 304  QNDVK----PDKKTKKTKHCTYSNQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIV 359
            +  VK    P          T  +Q     S   Q    L +      R      +R   
Sbjct: 1165 KALVKELSTPPPGASDLYFATQYSQ-----STWGQFKSCLWKQWWTYWRSPDYNLVRFFF 1219

Query: 360  NIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTF-PM---EMSILI 415
             +  ALM+G +F   G   S+   +  ++   +   V+   + N  T  PM   E ++  
Sbjct: 1220 TLAAALMVGTIFWKVGTKRSNAN-DLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFY 1278

Query: 416  KEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVV 475
            +E     YS   Y ++  + +IP        +T IVY +        +F  F   S    
Sbjct: 1279 RERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSF 1338

Query: 476  FIAQSVGYM---------VGAVFNVVNGTFVGPVLVVPMMMFSGFGVSINDIPKYMRW 524
                  G M         V A+F      F G        +FSGF +    IPK+  W
Sbjct: 1339 LYFTYYGMMTVSLTPNQQVAAIF---AAAFYG-----LFNLFSGFFIPRPKIPKWWVW 1388

Length = 1470

>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter

 Score =  135 bits (343), Expect = 1e-36
 Identities = 59/212 (27%), Positives = 111/212 (52%), Gaps = 5/212 (2%)

Query: 334 QLGVLLSRGLLKVKRDSTLTHL-RIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSIL 392
           QL  LL R  L+  RD +L  L R+I  + +AL+ G +F N       +     LLF  +
Sbjct: 2   QLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTSLGGLNRPG-LLFFSI 60

Query: 393 IHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVY 452
           + +  +S+      F  E  +L +E  +  YS  AY ++  L+++P++    ++F  IVY
Sbjct: 61  LFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLIVY 120

Query: 453 PLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVF-NVVNGTFVGPVLVVPMMMFSGF 511
            + G P+  +RF +F    LL    A  +G  + A+  +  + + +GP+L++P+++ SGF
Sbjct: 121 FMVGLPV--SRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLLSGF 178

Query: 512 GVSINDIPKYMRWGSELSYLRYGLEGYVAAIY 543
            + ++ +P +++W   L+ L Y +E   A  +
Sbjct: 179 FIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210

Length = 210

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score =  141 bits (358), Expect = 4e-35
 Identities = 119/575 (20%), Positives = 212/575 (36%), Gaps = 122/575 (21%)

Query: 45  KQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG--YRSN-GVTGQILTNGHSR 101
             +  D+LK + G     +L  ++G  G+G S+LL  ++      + GV G I  +G + 
Sbjct: 70  DTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITP 129

Query: 102 N--INAFRRVSCYIQQDDRLQPLLTIEN------------------------------VM 129
                 +R    Y  + D   P LT+                                 M
Sbjct: 130 EEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYM 189

Query: 130 SLLGLDESQNTRSSQ-----LSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS 184
           +  GL  ++NT+        +SGG++KR+SIA E                          
Sbjct: 190 ATYGLSHTRNTKVGNDFVRGVSGGERKRVSIA-EAS------------------------ 224

Query: 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK-MISQQGRTIICTIHQPSATLFQMFD 243
                +   ++   D  T GLDS +  + I+ LK   +    T +  I+Q S   +++FD
Sbjct: 225 -----LGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFD 279

Query: 244 QVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASG---EYGVDNINAMV 300
           +V +L  G  +Y G  D+   Y   +   CP     ADF+  L S    +        + 
Sbjct: 280 KVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQIKPGYEKKVP 339

Query: 301 EQAQN------------------DVKPDKKTKKTKHCTYSNQILQD------------TS 330
              Q                   D   D+ ++      Y    +               S
Sbjct: 340 RTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVS 399

Query: 331 YSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYN-LLF 389
           +S Q+   L+R  L++K + + T   +  NI +AL+L  +F N  +  S        L F
Sbjct: 400 FSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFF 459

Query: 390 SILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSL---KAYYVSVNLLDIPVAGFCCLL 446
           +IL +    S +L I +      I+ K   +R Y+L    A  ++  + +IP      ++
Sbjct: 460 AILFN--AFSSLLEIASMYEARPIVEK---HRKYALYHPSADAIASIISEIPFKIIESVV 514

Query: 447 FTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVG----YMVGAVFNVVNGTFV-GPVL 501
           F  I+Y +        RF       LL++FI           +GAV   ++       +L
Sbjct: 515 FNIILYFMVNFRRTAGRFF----FYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAIL 570

Query: 502 VVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLE 536
           ++ + +++GF +    +  + +W   ++ L Y  E
Sbjct: 571 LLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFE 605

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score =  112 bits (284), Expect = 2e-28
 Identities = 57/250 (22%), Positives = 106/250 (42%), Gaps = 66/250 (26%)

Query: 30  KFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG 89
           + K+L+++      +    +  L ++       + + I+GP+G+GKS+LL +L+G     
Sbjct: 1   ELKNLSFS------YPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP- 53

Query: 90  VTGQILTNG---HSRNINAFRRVSCYIQQDDRLQPLLT---------------------- 124
            +G++L +G      ++   RR    + Q+   Q                          
Sbjct: 54  TSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQ-FFGPTVEEEVAFGLENLGLPEEEIE 112

Query: 125 --IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKR 182
             +E  + L+GL+  ++     LSGGQK+R++IA                          
Sbjct: 113 ERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIA-------------------------- 146

Query: 183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMF 242
             +   L  +P ++ LDEPT GLD     + ++LLK +  +G+TII   H     L ++ 
Sbjct: 147 -GV---LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELA 201

Query: 243 DQVYLLSGGQ 252
           D+V +L  G+
Sbjct: 202 DRVIVLEDGK 211

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score =  115 bits (289), Expect = 1e-26
 Identities = 139/588 (23%), Positives = 249/588 (42%), Gaps = 120/588 (20%)

Query: 41  GLGFKQEPK-DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY--RSNGVTGQILTN 97
           G+   ++ K  +LK+  G    +++  ++GP  +GK++LL  L+G    S  V+G+I  N
Sbjct: 169 GINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYN 228

Query: 98  GHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRS---SQLSGGQKKR-- 152
           G+  N    R+ S YI Q+D    ++T++  +      +   TR    S+L+  +K    
Sbjct: 229 GYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGI 288

Query: 153 ----------LSIALE-----LINNPRVMFL-----------DEPTTSNPNDQKKRLSIA 186
                      + A+E     LI +  +  L           DE        QKKR++  
Sbjct: 289 FPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTG 348

Query: 187 LELINNP-RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGR-TIICTIHQPSATLFQMFDQ 244
            E+I  P + +F+DE +TGLDS +  Q +K L+ I      T++ ++ QP+   F +FD 
Sbjct: 349 -EMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDD 407

Query: 245 VYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASG----EYGVD------ 294
           + LLS GQ +YQG  D ++ +  S    CP+    ADF+ E+ S     +Y  D      
Sbjct: 408 IILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYR 467

Query: 295 --NINAMVE---------QAQNDVK-PDKKTKKTKHCTYSNQILQDTSYS----NQLGVL 338
             +++   E         Q +N++  P  K++  K        L  + YS      L   
Sbjct: 468 YISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAA------LVFSKYSVPKMELLKAC 521

Query: 339 LSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLF-------QNSGEYASSVLINYNLLFSI 391
             +  L +KR++ +   + +  I VA +   +F       +N  + A            +
Sbjct: 522 WDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGA------------L 569

Query: 392 LIHHVMTSMMLNILTFPMEMSILIKE------------HFNRWYSLKAYYVSVNLLDIPV 439
            I  ++ SM++N+     E++++I+             H    ++L  +     LL IP+
Sbjct: 570 YIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTF-----LLGIPI 624

Query: 440 AGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVNGTF--- 496
           +    +++  I Y   G   E +RF       LL+VF+ Q    M   +F ++       
Sbjct: 625 SIIESVVWVVITYYSIGFAPEASRFF----KQLLLVFLIQQ---MAAGIFRLIASVCRTM 677

Query: 497 ----VGPVLVVPMM-MFSGFGVSINDIPKYMRWGSELSYLRYGLEGYV 539
                G  LV+ ++ +  GF +   +IP +  W   +S L YG     
Sbjct: 678 IIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALA 725

Length = 1470

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score =  105 bits (264), Expect = 8e-26
 Identities = 69/257 (26%), Positives = 112/257 (43%), Gaps = 73/257 (28%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG---- 84
           I+ K+L+ T   G     E    LK +       + +AI+GPSG+GKS+LL++L G    
Sbjct: 1   IELKNLSKTYGGG----GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP 56

Query: 85  ----YRSNGVTGQILTNGHSRNINAFRR--VSCYIQQDDRLQPLLTI-ENVM-------- 129
                R +G     ++    + + AFRR  +  ++ Q   L P LT  ENV         
Sbjct: 57  TSGEVRVDGTD---ISKLSEKELAAFRRRHIG-FVFQSFNLLPDLTALENVELPLLLAGV 112

Query: 130 -------------SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNP 176
                          +GL +  N   S+LSGGQ++R++IA                    
Sbjct: 113 PKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIA-------------------- 152

Query: 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL-KMISQQGRTIICTIHQPS 235
                R      L N+P+++  DEPT  LDS++  + ++LL ++  + G TI+   H P 
Sbjct: 153 -----RA-----LANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE 202

Query: 236 ATLFQMFDQVYLLSGGQ 252
             L +  D++  L  G+
Sbjct: 203 --LAEYADRIIELRDGK 217

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score =  103 bits (260), Expect = 1e-25
 Identities = 53/224 (23%), Positives = 106/224 (47%), Gaps = 54/224 (24%)

Query: 41  GLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS 100
            L      + VL +L     + +++ I+GP+GAGKS+LL  L+G      +G+IL +G  
Sbjct: 4   NLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDG-- 60

Query: 101 RNINAF------RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLS 154
           +++ +       R+++ Y+ Q             + LLGL    +   ++LSGG+++R+ 
Sbjct: 61  KDLASLSPKELARKIA-YVPQ------------ALELLGLAHLADRPFNELSGGERQRVL 107

Query: 155 IALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCI 214
           +A  L   P ++ LDEPT+             L++ +   ++                  
Sbjct: 108 LARALAQEPPILLLDEPTS------------HLDIAHQIELL------------------ 137

Query: 215 KLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
           +LL+ ++++ G+T++  +H  +    +  D+V LL  G+ + QG
Sbjct: 138 ELLRRLARERGKTVVMVLHDLNLAA-RYADRVILLKDGRIVAQG 180

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score =  103 bits (260), Expect = 1e-25
 Identities = 61/231 (26%), Positives = 111/231 (48%), Gaps = 67/231 (29%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           I+FK++++       +   PK VLK++       + +AI+GPSG+GKS+LL +L      
Sbjct: 1   IEFKNVSF------SYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP 54

Query: 89  GVTGQILTNGHS-RNIN--AFRRVSCYIQQDDRLQPLL---TI-ENVMSLLGLDESQNTR 141
             +G+IL +G   R+++  + R+   Y+ QD    P L   TI EN+             
Sbjct: 55  -TSGEILIDGVDLRDLDLESLRKNIAYVPQD----PFLFSGTIRENI------------- 96

Query: 142 SSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP 201
              LSGGQ++R++IA       R                        L+ +P ++ LDE 
Sbjct: 97  ---LSGGQRQRIAIA-------RA-----------------------LLRDPPILILDEA 123

Query: 202 TTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ 252
           T+ LD ++ +  ++ L+ ++ +G+T+I   H+ S    +  D++ +L  G+
Sbjct: 124 TSALDPETEALILEALRALA-KGKTVIVIAHRLS--TIRDADRIIVLDDGR 171

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score =  103 bits (260), Expect = 2e-25
 Identities = 50/215 (23%), Positives = 92/215 (42%), Gaps = 38/215 (17%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN--GVTGQILTNGHSRNINA- 105
             +LK+  G     +++ ++G  G+G S+LL  L+        V G I  NG      A 
Sbjct: 20  IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAE 79

Query: 106 -FRRVSCYIQQDDRLQPLLTIENVMSL-LGLDESQNTRSSQLSGGQKKRLSIALELINNP 163
            +     Y+ ++D   P LT+   +   L    ++  R   +SGG++K            
Sbjct: 80  KYPGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRG--ISGGERK------------ 125

Query: 164 RVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ 223
                             R+SIA  L++   V+  D  T GLDS +  + +K ++ ++  
Sbjct: 126 ------------------RVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADV 167

Query: 224 -GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
              T   +++Q S  ++ +FD+V +L  G+ +Y G
Sbjct: 168 LKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score =  104 bits (262), Expect = 2e-25
 Identities = 59/213 (27%), Positives = 92/213 (43%), Gaps = 56/213 (26%)

Query: 44  FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS--R 101
           +K+  K  + +L       ++  ++G +GAGK++ L +L+G      +G    NG+S   
Sbjct: 10  YKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTG-ELRPTSGTAYINGYSIRT 68

Query: 102 NINAFRRVSCYIQQDDRLQPLLT----------------------IENVMSLLGLDESQN 139
           +  A R+   Y  Q D L   LT                      +E ++ +LGL +  N
Sbjct: 69  DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN 128

Query: 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLD 199
            R+  LSGG K++LS+A                            IA  LI  P V+ LD
Sbjct: 129 KRARTLSGGMKRKLSLA----------------------------IA--LIGGPSVLLLD 158

Query: 200 EPTTGLDSQSCSQCIKLLKMISQQGRTIICTIH 232
           EPT+GLD  S      L+  + ++GR+II T H
Sbjct: 159 EPTSGLDPASRRAIWDLILEV-RKGRSIILTTH 190

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score =  103 bits (260), Expect = 5e-25
 Identities = 70/271 (25%), Positives = 114/271 (42%), Gaps = 76/271 (28%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           I+ ++L+ T   G       K  LK++       + +A++GPSGAGKS+LL  L+G    
Sbjct: 1   IEVENLSKTYPNG-------KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGL-VE 52

Query: 89  GVTGQILTNGHSRN------INAFRRVSCYIQQDDRLQPLLT-IENVMS----------- 130
             +G +L +G   N      +   RR    I Q   L   L+ +ENV+S           
Sbjct: 53  PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRS 112

Query: 131 ------------------LLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
                              +GL +    R+ QLSGGQ++R++IA  L+  P+++  DEP 
Sbjct: 113 LFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPV 172

Query: 173 TSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTI 231
            S                              LD  S  Q + LLK I+++ G T+I ++
Sbjct: 173 AS------------------------------LDPASSRQVMDLLKRINREEGITVIVSL 202

Query: 232 HQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
           HQ      +  D++  L  G+ ++ G   +L
Sbjct: 203 HQVDLAR-EYADRIVGLKDGRIVFDGPPAEL 232

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score =  100 bits (253), Expect = 8e-25
 Identities = 50/207 (24%), Positives = 96/207 (46%), Gaps = 50/207 (24%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS--RNINAF 106
           K  L ++       ++  ++GP+GAGK++L+ ++ G      +G+I   G    +     
Sbjct: 13  KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP-DSGEIKVLGKDIKKEPEEV 71

Query: 107 RRVSCYIQQDDRLQPLLT-IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV 165
           +R   Y+ ++  L   LT  EN+               +LSGG K+RL++A         
Sbjct: 72  KRRIGYLPEEPSLYENLTVRENL---------------KLSGGMKQRLALA--------- 107

Query: 166 MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGR 225
                               AL  +++P ++ LDEPT+GLD +S  +  +LL+ + ++G+
Sbjct: 108 -------------------QAL--LHDPELLILDEPTSGLDPESRREFWELLRELKKEGK 146

Query: 226 TIICTIHQPSATLFQMFDQVYLLSGGQ 252
           TI+ + H       ++ D+V +L+ G+
Sbjct: 147 TILLSSHILE-EAERLCDRVAILNNGR 172

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score =  100 bits (250), Expect = 1e-24
 Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 60/214 (28%)

Query: 40  TGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNG 98
             L F+   +  L N+     + +++A++GP+G+GKS+LL  ++G  +     G+IL +G
Sbjct: 3   ENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTS--GEILIDG 60

Query: 99  HSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALE 158
                            D    PL  +   +  +           QLSGGQ++R+++A  
Sbjct: 61  K----------------DIAKLPLEELRRRIGYV----------PQLSGGQRQRVALARA 94

Query: 159 LINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK 218
           L+ NP ++ LDEP                              T+GLD  S  + ++LL+
Sbjct: 95  LLLNPDLLLLDEP------------------------------TSGLDPASRERLLELLR 124

Query: 219 MISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ 252
            ++++GRT+I   H P        D+V +L  G+
Sbjct: 125 ELAEEGRTVIIVTHDPE-LAELAADRVIVLKDGK 157

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score =  101 bits (255), Expect = 3e-24
 Identities = 64/246 (26%), Positives = 113/246 (45%), Gaps = 25/246 (10%)

Query: 25  DRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG 84
               I+ ++LT +      +   P  VL+++       ++ A++GP+GAGKS+LL  + G
Sbjct: 1   MMPMIEVENLTVS------YGNRP--VLEDISLSVEKGEITALIGPNGAGKSTLLKAILG 52

Query: 85  YRSNGVTGQILTNG-HSRNINAFRRVSCYIQQD---DRLQPLLTIENVMSLLGLDESQNT 140
                 +G+I   G   R      R+  Y+ Q    DR  P+ T+++V+ L    +    
Sbjct: 53  LLKP-SSGEIKIFGKPVRKRRKRLRIG-YVPQKSSVDRSFPI-TVKDVVLLGRYGKKGWF 109

Query: 141 RSSQLSGGQKKRLSIALELINNPRVM--FLDEPTTSNPNDQKKRLSIALELINNPRVMFL 198
           R   L+   K+++  ALE +     M    D         QK+R+ +A  L  NP ++ L
Sbjct: 110 RR--LNKKDKEKVDEALERVG----MEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLL 163

Query: 199 DEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258
           DEP TG+D     +   LLK + Q+G+T++   H     +   FD+V  L+       G 
Sbjct: 164 DEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLNRHLIAS-GP 221

Query: 259 TDQLVN 264
            ++++ 
Sbjct: 222 PEEVLT 227

Length = 254

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score =  105 bits (264), Expect = 1e-23
 Identities = 67/266 (25%), Positives = 117/266 (43%), Gaps = 69/266 (25%)

Query: 28  EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
           EI+F+++++       +  +   VL++L    P  + +AI+G SG+GKS+LL +L G   
Sbjct: 471 EIEFENVSFR------YGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK 524

Query: 88  NGVTGQILTNGHSRNI---NAFRRVSCYIQQDDRLQ------------PLLTIENVMSLL 132
               G+IL +G   N     + RR   Y+ QD  L             P  T E ++   
Sbjct: 525 P-QQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAA 583

Query: 133 --------------GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPND 178
                         G D       + LSGGQ++RL++A                      
Sbjct: 584 QLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALA---------------------- 621

Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATL 238
              R      L++ P+++ LDE T+ LD ++ +  ++ L  I  QGRT+I   H+ S   
Sbjct: 622 ---RA-----LLSKPKILLLDEATSALDPETEAIILQNLLQI-LQGRTVIIIAHRLS--T 670

Query: 239 FQMFDQVYLLSGGQCLYQGATDQLVN 264
            +  D++ +L  G+ + QG+ ++L+ 
Sbjct: 671 IRSADRIIVLDQGKIVEQGSHEELLA 696

Length = 709

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 98.7 bits (247), Expect = 2e-23
 Identities = 70/254 (27%), Positives = 121/254 (47%), Gaps = 66/254 (25%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR-- 86
           I+ K+++     G    +     LK++     + + +AI+GPSG+GKS+LL++L G    
Sbjct: 2   IELKNVSKIYGLGGEKVE----ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP 57

Query: 87  SNG---VTGQILTNGHSRNINAFRRVSC-YIQQDDRLQPLLTI-ENVM------------ 129
           ++G   + G+ LT    + +   RR    ++ Q+  L P LT+ ENV             
Sbjct: 58  TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGR 117

Query: 130 ---------SLLGLDESQNT-RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQ 179
                     +LGL++     + S+LSGGQ++R++IA       R               
Sbjct: 118 RKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIA-------RA-------------- 156

Query: 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATL 238
                    LINNP+++  DEPT  LDS++  + ++LL+ ++++ G+TII   H P   L
Sbjct: 157 ---------LINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--EL 205

Query: 239 FQMFDQVYLLSGGQ 252
            +  D+V  L  G+
Sbjct: 206 AKYADRVIELKDGK 219

Length = 226

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 95.4 bits (238), Expect = 3e-22
 Identities = 60/268 (22%), Positives = 111/268 (41%), Gaps = 75/268 (27%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           I+ ++L++            K  LK++       + + ++GP+G+GKS+LL +L     N
Sbjct: 4   IEAENLSFRYPGR-------KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLL-----N 51

Query: 89  GV----TGQILTNG----HSRNINAFRRVSCYIQQDDRLQ-------------PLLT--- 124
           G+    +G++L +G      +++   R+    + Q+   Q                    
Sbjct: 52  GLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLP 111

Query: 125 -------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPN 177
                  +   + L+GL+E  +     LSGGQK+R++IA                     
Sbjct: 112 REEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIA--------------------- 150

Query: 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL-KMISQQGRTIICTIHQPSA 236
                  +   L   P ++ LDEPT GLD +   + ++LL K+  + G+TII   H    
Sbjct: 151 ------GV---LAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE- 200

Query: 237 TLFQMFDQVYLLSGGQCLYQGATDQLVN 264
            + +  D+V +L  G+ L  G   ++ N
Sbjct: 201 LVLEYADRVVVLDDGKILADGDPAEIFN 228

Length = 235

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 93.0 bits (232), Expect = 1e-21
 Identities = 51/235 (21%), Positives = 96/235 (40%), Gaps = 62/235 (26%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS--RNINAF 106
           K  L  +        +  ++GP+GAGK++L+ +L+       +G I  +G    +     
Sbjct: 13  KRALDGVSLTLG-PGMYGLLGPNGAGKTTLMRILATLTPP-SSGTIRIDGQDVLKQPQKL 70

Query: 107 RRVSCYIQQDDRLQPLLT----------------------IENVMSLLGLDESQNTRSSQ 144
           RR   Y+ Q+  + P  T                      ++ V+ L+ L +    +   
Sbjct: 71  RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGS 130

Query: 145 LSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTG 204
           LSGG ++R+ IA  L+ +P +                       LI       +DEPT G
Sbjct: 131 LSGGMRRRVGIAQALVGDPSI-----------------------LI-------VDEPTAG 160

Query: 205 LDSQSCSQCIKLLKMISQQG--RTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
           LD +   + I+   ++S+ G  R +I + H        + +QV +L+ G+ +++G
Sbjct: 161 LDPE---ERIRFRNLLSELGEDRIVILSTHIVEDVES-LCNQVAVLNKGKLVFEG 211

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 90.7 bits (226), Expect = 4e-21
 Identities = 61/231 (26%), Positives = 103/231 (44%), Gaps = 60/231 (25%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           ++ K+++        + Q  K VL ++     + +++A++GPSG+GKS+LL  ++G    
Sbjct: 1   LELKNVSKR------YGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP 52

Query: 89  GVTGQILTNG-----HSRNINAFRRVSCYIQQDDRLQPLLTI-ENVMSLLGLDESQNTRS 142
             +G IL +G         +   RR    + QD  L P LT+ EN+   LGL        
Sbjct: 53  -DSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIA--LGL-------- 101

Query: 143 SQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPT 202
              SGGQ++R+++A       R                        L  +P V+ LDEPT
Sbjct: 102 ---SGGQQQRVALA-------RA-----------------------LAMDPDVLLLDEPT 128

Query: 203 TGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQ 252
           + LD  +  +   LLK +  Q G T++   H       ++ D+V +L  G+
Sbjct: 129 SALDPITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 91.4 bits (228), Expect = 5e-21
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 29/165 (17%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           ++ ++++ T     G        L+++       + +A++GPSG GKS+LL +++G    
Sbjct: 1   LEVRNVSKT----YGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL-ER 55

Query: 89  GVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTI-ENVM------------------ 129
             +G++L +G    +        Y+ Q D L P LT+ +NV                   
Sbjct: 56  PTSGEVLVDG--EPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAE 113

Query: 130 ---SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
               L+GL   +N    QLSGG ++R+++A  L  +P V+ LDEP
Sbjct: 114 ELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEP 158

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 90.8 bits (226), Expect = 8e-21
 Identities = 55/218 (25%), Positives = 103/218 (47%), Gaps = 24/218 (11%)

Query: 41  GLGFKQEPK-DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNG 98
            + F  +   ++L +L     + ++IA+ G +GAGK++L  +L+G  + +   G IL NG
Sbjct: 4   NISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESS--GSILLNG 61

Query: 99  HSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALE 158
                   R+   Y+ QD   Q  L  ++V   L L         +      ++    L+
Sbjct: 62  KPIKAKERRKSIGYVMQDVDYQ--LFTDSVREELLL-------GLKELDAGNEQAETVLK 112

Query: 159 LINNPRVMFLDEPTTSNPND----QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCI 214
            ++      L      +P      QK+RL+IA  L++   ++  DEPT+GLD ++  +  
Sbjct: 113 DLD------LYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVG 166

Query: 215 KLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ 252
           +L++ ++ QG+ +I   H     L ++ D+V LL+ G 
Sbjct: 167 ELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLANGA 203

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 95.8 bits (239), Expect = 9e-21
 Identities = 67/261 (25%), Positives = 120/261 (45%), Gaps = 39/261 (14%)

Query: 16  ESGTSLETA--DRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGA 73
            SG   E A    IEI  ++L++    G       K  L +L     + QL A++G SGA
Sbjct: 306 GSGEKAEVANEPPIEISLENLSFRYPDG-------KPALSDLNLTIKAGQLTALVGASGA 358

Query: 74  GKSSLLDVLSGYRSNGVTGQILTNGHSR---NINAFRRVSCYIQQDDRLQPLL---TI-E 126
           GKS+LL++L G+ +    G+I  NG      +  A+R+   ++ Q     P L   TI E
Sbjct: 359 GKSTLLNLLLGFLA-PTQGEIRVNGIDLRDLSPEAWRKQISWVSQ----NPYLFAGTIRE 413

Query: 127 NV-MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPND----QKK 181
           N+ ++     + +   +   +G         LE +  P    LD             Q +
Sbjct: 414 NILLARPDASDEEIIAALDQAG--------LLEFVPKPDG--LDTVIGEGGAGLSGGQAQ 463

Query: 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQM 241
           RL++A  L++   ++ LDEPT  LD+++    ++ L+ +++Q   ++ T H+        
Sbjct: 464 RLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVIT-HRL-EDAADA 521

Query: 242 FDQVYLLSGGQCLYQGATDQL 262
            D++ +L  G+ + QG  ++L
Sbjct: 522 -DRIVVLDNGRLVEQGTHEEL 541

Length = 559

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 91.1 bits (227), Expect = 2e-20
 Identities = 57/248 (22%), Positives = 109/248 (43%), Gaps = 17/248 (6%)

Query: 41  GLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG-- 98
            L F    K +L +L    P  ++  I+GP+G+GKS+LL  L+G      +G++L +G  
Sbjct: 7   NLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK-SGEVLLDGKD 65

Query: 99  -HSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIAL 157
             S +     +   Y+ Q       LT+  ++ L      +           K+   I  
Sbjct: 66  IASLSPKELAKKLAYVPQSPSAPFGLTVYELVLL-----GRYPHLGLFGRPSKEDEEIVE 120

Query: 158 ELINNPRVM-FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKL 216
           E +    +    D P       +++R+ IA  L     ++ LDEPT+ LD     + ++L
Sbjct: 121 EALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLEL 180

Query: 217 LKMISQ-QGRTIICTIHQPS-ATLFQMFDQVYLLSGGQCLYQGATDQLVN--YLSSV-NL 271
           L+ +++ +G T++  +H  + A  +   D + LL  G+ + QG  ++++    L  V  +
Sbjct: 181 LRDLNREKGLTVVMVLHDLNLAARYA--DHLILLKDGKIVAQGTPEEVLTEENLREVYGV 238

Query: 272 PCPKYHNP 279
                 +P
Sbjct: 239 DADVIEDP 246

Length = 258

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 90.3 bits (225), Expect = 3e-20
 Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 25/143 (17%)

Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVS 110
           VL+++       + +AI+GPSG GKS+LL +++G      +G++L +G  R +       
Sbjct: 18  VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGL-EKPTSGEVLLDG--RPVTGPGPDI 74

Query: 111 CYIQQDDRLQPLLTI-ENVM------------------SLL---GLDESQNTRSSQLSGG 148
            Y+ Q+D L P LT+ +NV                    LL   GL   ++    QLSGG
Sbjct: 75  GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGG 134

Query: 149 QKKRLSIALELINNPRVMFLDEP 171
            ++R++IA  L   P+++ LDEP
Sbjct: 135 MRQRVAIARALATRPKLLLLDEP 157

Length = 248

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 89.7 bits (223), Expect = 4e-20
 Identities = 68/274 (24%), Positives = 112/274 (40%), Gaps = 76/274 (27%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR-- 86
           ++ ++L+     G       K  LKN+       + +AI+GPSGAGKS+LL  ++     
Sbjct: 2   LEVENLSKVYPNG-------KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP 54

Query: 87  SNG---VTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLT-IENVMS------------ 130
           S+G   + G  +T    + +   RR    I Q   L   LT +ENV+             
Sbjct: 55  SSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSL 114

Query: 131 -----------------LLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT 173
                             +GL +    R+ QLSGGQ++R++IA  L   P ++  DEP  
Sbjct: 115 LGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIA 174

Query: 174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIH 232
           S                              LD ++  Q +  LK I+++ G T+I  +H
Sbjct: 175 S------------------------------LDPKTSKQVMDYLKRINKEDGITVIINLH 204

Query: 233 QPS-ATLFQMFDQVYLLSGGQCLYQGATDQLVNY 265
           Q   A  +   D++  L  G+ ++ GA  +L + 
Sbjct: 205 QVDLAKKYA--DRIVGLKAGEIVFDGAPSELDDE 236

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 90.5 bits (224), Expect = 4e-20
 Identities = 71/231 (30%), Positives = 110/231 (47%), Gaps = 26/231 (11%)

Query: 39  STGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY-RSNGVTGQILTN 97
           ++ L F+ + + VLK L   F  + +  ++G +G GKS+L   LSG  R     G +L  
Sbjct: 4   TSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ--KGAVLWQ 61

Query: 98  GHS-----RNINAFRRVSCYIQQDDRLQPLLT-----IENVMSLLGLDESQNTRSSQLSG 147
           G       R + A R+    + QD   Q   T     I   +  LG+ E++ TR      
Sbjct: 62  GKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITR------ 115

Query: 148 GQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDS 207
               R+  AL L++     F  +P     + QKKR++IA  L+   R + LDEPT GLD 
Sbjct: 116 ----RVDEALTLVDAQH--FRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDP 169

Query: 208 QSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258
              +Q I +++ I  QG  +I + H     ++++ D VY+L  GQ L  GA
Sbjct: 170 AGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQGQILTHGA 219

Length = 271

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 90.0 bits (224), Expect = 4e-20
 Identities = 69/251 (27%), Positives = 111/251 (44%), Gaps = 69/251 (27%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH------SRN 102
              LK++       +++AI+GPSGAGKS+LL  L+G   +  +G+IL NG        + 
Sbjct: 17  HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG-LVDPTSGEILFNGVQITKLKGKE 75

Query: 103 INAFRRVSCYIQQDDRLQPLLT-IENVM-----------SLLGL----DESQ-------- 138
           +   RR    I Q   L P L+ +ENV+           SL GL    D++Q        
Sbjct: 76  LRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERV 135

Query: 139 ------NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINN 192
                   R+S LSGGQ++R++IA  L+  P+++  DEP  S                  
Sbjct: 136 GILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVAS------------------ 177

Query: 193 PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGG 251
                LD  +         + + +LK I+Q+ G T+I  +HQ      +  D++  L  G
Sbjct: 178 -----LDPESAK-------KVMDILKDINQEDGITVIVNLHQVDLAK-KYADRIIGLKAG 224

Query: 252 QCLYQGATDQL 262
           + ++ G   +L
Sbjct: 225 RIVFDGPASEL 235

Length = 258

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 86.4 bits (215), Expect = 4e-19
 Identities = 67/274 (24%), Positives = 113/274 (41%), Gaps = 86/274 (31%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRS 87
           I+ + LT +           + VLK +       +++AI+GPSG+GKS+LL ++ G  R 
Sbjct: 1   IELRGLTKSFGG--------RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP 52

Query: 88  NGVTGQILTNGH-------SRNINAFRRVSCYIQQ----DDRLQPLLTI-ENV------- 128
           +   G++L +G        +      RR+    Q     D      LT+ ENV       
Sbjct: 53  DS--GEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDS-----LTVFENVAFPLREH 105

Query: 129 ---------------MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT 173
                          +  +GL  +++   ++LSGG KKR+++A                 
Sbjct: 106 TRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALA----------------- 148

Query: 174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLD---SQSCSQCIKLLKMISQQGRTIICT 230
                   R ++AL    +P ++  DEPT GLD   S      I+ LK   + G T I  
Sbjct: 149 --------R-ALAL----DPELLLYDEPTAGLDPIASGVIDDLIRSLKK--ELGLTSIMV 193

Query: 231 IHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
            H    T F + D++ +L  G+ + +G  ++L  
Sbjct: 194 THDLD-TAFAIADRIAVLYDGKIVAEGTPEELRA 226

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 85.9 bits (213), Expect = 5e-19
 Identities = 59/235 (25%), Positives = 108/235 (45%), Gaps = 51/235 (21%)

Query: 44  FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI 103
           F ++    + N+    P N +  ++GP+GAGKS+LL +++G      +G+I+ +GH    
Sbjct: 10  FGKQ--TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP-TSGEIIFDGHPWTR 66

Query: 104 NAFRRVSCYIQQD---------DRLQ--------PLLTIENVMSLLGLDESQNTRSSQLS 146
               ++   I+           + L+        P   I+ V++++ L  +   ++ Q S
Sbjct: 67  KDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFS 126

Query: 147 GGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLD 206
            G K+RL IA                            IAL  +N+P+++ LDEPT GLD
Sbjct: 127 LGMKQRLGIA----------------------------IAL--LNHPKLLILDEPTNGLD 156

Query: 207 SQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ 261
                +  +L++   +QG T+I + H  S  + Q+ D + ++S G   YQG  ++
Sbjct: 157 PIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 85.4 bits (212), Expect = 6e-19
 Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 23/196 (11%)

Query: 50  DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH------SRNI 103
             L ++       + + + GPSGAGK++LL +L G  +    GQ+   G        R +
Sbjct: 16  AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT-PSRGQVRIAGEDVNRLRGRQL 74

Query: 104 NAFRRVSCYIQQDDRLQPLLTI-ENV---MSLLGLDESQNTRSSQLSGGQKKRLSIALEL 159
              RR    + QD RL P  T+ ENV   + + G  E    R  Q      +R+  AL  
Sbjct: 75  PLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKE----REIQ------RRVGAALRQ 124

Query: 160 INNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKM 219
           +             S    Q  R++IA  ++N+P ++  DEPT  LD     + + LLK 
Sbjct: 125 VGLEHKADAFPEQLSGGEQQ--RVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKR 182

Query: 220 ISQQGRTIICTIHQPS 235
           ++++G T+I   H  S
Sbjct: 183 LNKRGTTVIVATHDLS 198

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 90.3 bits (225), Expect = 6e-19
 Identities = 73/294 (24%), Positives = 121/294 (41%), Gaps = 79/294 (26%)

Query: 4   VEFELSNSLSSSESGT-SLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSN 62
           V F L   L+  + G   L + D + I+ +DL            + K +   L    P+ 
Sbjct: 325 VTF-LETPLAHPQQGEKELASNDPVTIEAEDLEI-------LSPDGKTLAGPLNFTLPAG 376

Query: 63  QLIAIMGPSGAGKSSLLDVLSG---YRSNGVTGQILTNG---HSRNINAFRRVSCYIQQD 116
           Q IA++GPSGAGK+SLL+ L G   Y+     G +  NG      +  ++R+   ++ Q+
Sbjct: 377 QRIALVGPSGAGKTSLLNALLGFLPYQ-----GSLKINGIELRELDPESWRKHLSWVGQN 431

Query: 117 DRL------------QPLLTIENVMSLL--------------GLDESQNTRSSQLSGGQK 150
            +L             P  + E +   L              GLD     +++ LS GQ 
Sbjct: 432 PQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQA 491

Query: 151 KRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSC 210
           +RL++A  L+   +++ LDEPT S                              LD+ S 
Sbjct: 492 QRLALARALLQPCQLLLLDEPTAS------------------------------LDAHSE 521

Query: 211 SQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
              ++ L   S++  T++ T HQ    L Q  DQ++++  GQ + QG   +L  
Sbjct: 522 QLVMQALNAASRRQTTLMVT-HQLED-LAQW-DQIWVMQDGQIVQQGDYAELSQ 572

Length = 588

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 86.0 bits (214), Expect = 6e-19
 Identities = 69/267 (25%), Positives = 118/267 (44%), Gaps = 79/267 (29%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           I+ K+L+ +           K+VLK +       +++ I+GPSG+GKS+LL  L     N
Sbjct: 3   IEIKNLSKSFGD--------KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCL-----N 49

Query: 89  GVT----GQILTNG----HSRNINAFRRVSCYIQQDDRLQPLLTI-ENVM---------- 129
           G+     G I  +G      ++I   RR    + Q   L P LT+ ENV           
Sbjct: 50  GLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLS 109

Query: 130 ---------SLL---GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPN 177
                     LL   GL +  +   +QLSGGQ++R++IA                     
Sbjct: 110 KAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIA--------------------- 148

Query: 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSAT 237
               R   AL +  +P+VM  DEPT+ LD +   + + ++K ++++G T+I   H+    
Sbjct: 149 ----R---ALAM--DPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG-- 197

Query: 238 LF--QMFDQVYLLSGGQCLYQGATDQL 262
            F  ++ D+V  +  G+ + +G  ++ 
Sbjct: 198 -FAREVADRVIFMDQGKIIEEGPPEEF 223

Length = 240

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 85.3 bits (212), Expect = 6e-19
 Identities = 60/244 (24%), Positives = 98/244 (40%), Gaps = 70/244 (28%)

Query: 40  TGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY-RSNGVTGQILTNG 98
            GL         L +L       + +A++GPSG GK++LL +++G  R +   G+IL +G
Sbjct: 4   KGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDS--GEILIDG 61

Query: 99  --------HSRNINAFRRVSCYIQQDDRLQPLLTI-ENV--------------------- 128
                     RNI         + QD  L P LT+ EN+                     
Sbjct: 62  RDVTGVPPERRNI-------GMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVREL 114

Query: 129 MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALE 188
           + L+GL+   N    +LSGGQ++R+++A  L   P ++ LDEP  S   D K R  +  E
Sbjct: 115 LELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEP-LSAL-DAKLREELREE 172

Query: 189 LINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL 248
                                      L ++  + G T I   H     L  + D++ ++
Sbjct: 173 ---------------------------LKELQRELGITTIYVTHDQEEALA-LADRIAVM 204

Query: 249 SGGQ 252
           + G+
Sbjct: 205 NEGR 208

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 85.6 bits (213), Expect = 9e-19
 Identities = 54/216 (25%), Positives = 101/216 (46%), Gaps = 16/216 (7%)

Query: 59  FPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHS-RNINAFRRVSCYIQ-- 114
               ++  ++GP+GAGK++L +++SG  R     G +L +G     +         I   
Sbjct: 23  VRPGEIHGLIGPNGAGKTTLFNLISGFLRPTS--GSVLFDGEDITGLPPHEIARLGIGRT 80

Query: 115 -QDDRLQPLLTI-ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFL---- 168
            Q  RL P LT+ ENVM             ++    +++    A EL+     + L    
Sbjct: 81  FQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELL---ERVGLADLA 137

Query: 169 DEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTII 228
           D P       Q++RL IA  L  +P+++ LDEP  GL+ +   +  +L++ + ++G T++
Sbjct: 138 DRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVL 197

Query: 229 CTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
              H     +  + D+V +L  G+ + +G  D++ N
Sbjct: 198 LVEHDMDV-VMSLADRVTVLDQGRVIAEGTPDEVRN 232

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 82.7 bits (205), Expect = 4e-18
 Identities = 53/226 (23%), Positives = 96/226 (42%), Gaps = 62/226 (27%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG------HSRN 102
           K +L +L       ++ AI+G SG+GKS+LL+++        +GQ+  NG      +S+ 
Sbjct: 11  KVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD-SGQVYLNGQETPPLNSKK 69

Query: 103 INAFRR-VSCYIQQDDRLQPLLTIENVMSL----------------------LGLDESQN 139
            + FRR    Y+ Q+  L    T+E  + L                      +GL+    
Sbjct: 70  ASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK 129

Query: 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLD 199
            +  +LSGG+++R+++A       R +                       +  P ++  D
Sbjct: 130 QKIYELSGGEQQRVALA-------RAI-----------------------LKPPPLILAD 159

Query: 200 EPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQV 245
           EPT  LD ++  + + LL  ++ +G+TII   H P     +  D+V
Sbjct: 160 EPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA--KQADRV 203

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 81.5 bits (202), Expect = 5e-18
 Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 58/208 (27%)

Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG---HSRNINAFR 107
           VL+N+       + +AI+GPSG+GKS+L  ++ G      +G++  +G      + N   
Sbjct: 17  VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP-TSGRVRLDGADISQWDPNELG 75

Query: 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMF 167
               Y+ QDD L      EN+                LSGGQ++RL +A       R ++
Sbjct: 76  DHVGYLPQDDELFSGSIAENI----------------LSGGQRQRLGLA-------RALY 112

Query: 168 LDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDS---QSCSQCIKLLKMISQQG 224
                                   NPR++ LDEP + LD    ++ +Q I  LK     G
Sbjct: 113 -----------------------GNPRILVLDEPNSHLDVEGERALNQAIAALKA---AG 146

Query: 225 RTIICTIHQPSATLFQMFDQVYLLSGGQ 252
            T I   H+P        D++ +L  G+
Sbjct: 147 ATRIVIAHRPE--TLASADRILVLEDGR 172

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 84.1 bits (208), Expect = 6e-18
 Identities = 75/280 (26%), Positives = 122/280 (43%), Gaps = 77/280 (27%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           I+ +DL Y+ S         K+ L N+    P N  IA++GP+GAGKS+L         N
Sbjct: 4   IETRDLCYSYSGS-------KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHF-----N 51

Query: 89  GV----TGQILTNGH---SRNINAFRRV-------------SCYIQQDDRLQPL------ 122
           G+    +G +L  G      NI   R+              S  ++QD    P+      
Sbjct: 52  GILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDE 111

Query: 123 ----LTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPND 178
                 + + + +LGL+E ++     LSGG+KKR++IA                      
Sbjct: 112 ETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAG--------------------- 150

Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSAT 237
                 IA+E    P+V+ LDEPT GLD Q   + I  L  + +  G T+I + HQ    
Sbjct: 151 -----VIAME----PQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-L 200

Query: 238 LFQMFDQVYLLSGGQCLYQGATDQLV---NYLSSVNLPCP 274
           + +M D +Y++  G+ +  G  +++    + L+ V+L  P
Sbjct: 201 VPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLARVHLDLP 240

Length = 277

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 81.8 bits (202), Expect = 2e-17
 Identities = 53/168 (31%), Positives = 90/168 (53%), Gaps = 30/168 (17%)

Query: 28  EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
           EI+FK+++Y+           K++LK++  +F    +  I+GPSGAGKS+L+ +++    
Sbjct: 3   EIEFKEVSYSSFG--------KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRL-I 53

Query: 88  NGVTGQILTNGHS-RNINAF---RRVSCYIQQ----------DDRLQPLL------TIEN 127
           +   G IL +G   + I+     R++    QQ          +    P+L       +E 
Sbjct: 54  DPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEY 113

Query: 128 VMSLLGLDESQNTRS-SQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
            +S++GL++   TR    LSGG+ +R+SIA  L NNP V+ LDEPT++
Sbjct: 114 YLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSA 161

Length = 241

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 81.4 bits (202), Expect = 2e-17
 Identities = 68/246 (27%), Positives = 106/246 (43%), Gaps = 71/246 (28%)

Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH---SRNINAFR 107
           +LK L    P  + +A++G SG GKS+++ +L  +  +  +G+IL +G      N+   R
Sbjct: 18  ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY-DPTSGEILLDGVDIRDLNLRWLR 76

Query: 108 RVSCYIQQDDRLQPLL---TI-EN-------------------------VMSLL-GLDES 137
                + Q+    P+L   TI EN                         +MSL  G D  
Sbjct: 77  SQIGLVSQE----PVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTL 132

Query: 138 QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMF 197
              R SQLSGGQK+R++IA       R                        L+ NP+++ 
Sbjct: 133 VGERGSQLSGGQKQRIAIA-------RA-----------------------LLRNPKILL 162

Query: 198 LDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
           LDE T+ LD++S     + L     +GRT I   H+ S    +  D + +L  GQ + QG
Sbjct: 163 LDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTI--RNADLIAVLQNGQVVEQG 219

Query: 258 ATDQLV 263
             D+L+
Sbjct: 220 THDELM 225

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 85.3 bits (212), Expect = 2e-17
 Identities = 69/280 (24%), Positives = 122/280 (43%), Gaps = 78/280 (27%)

Query: 17  SGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKS 76
             TS   AD++ +   ++++T      +  +P+ VLK L  +  + + +A++G +G GKS
Sbjct: 327 PTTSTAAADQVSLTLNNVSFT------YPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKS 380

Query: 77  SLLDVLS-GYRSNGVTGQILTNGHSRNINAF-----RRVSCYIQQ--------------- 115
           +LL +L+  +      G+IL NG    I  +     R+    + Q               
Sbjct: 381 TLLQLLTRAWDPQ--QGEILLNGQ--PIADYSEAALRQAISVVSQRVHLFSATLRDNLLL 436

Query: 116 ------DDRLQPLLTIENVMSLLGLDESQNT------RSSQLSGGQKKRLSIALELINNP 163
                 D+ L  +L    +  LL  D+  N       R  QLSGG+++RL IA       
Sbjct: 437 AAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGR--QLSGGEQRRLGIA------- 487

Query: 164 RVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ 223
           R +  D P                       ++ LDEPT GLD+++  Q ++LL   + Q
Sbjct: 488 RALLHDAP-----------------------LLLLDEPTEGLDAETERQILELLAEHA-Q 523

Query: 224 GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263
            +T++   H+   T  + FD++ ++  GQ + QG   +L+
Sbjct: 524 NKTVLMITHR--LTGLEQFDRICVMDNGQIIEQGTHQELL 561

Length = 574

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 80.9 bits (200), Expect = 3e-17
 Identities = 59/232 (25%), Positives = 111/232 (47%), Gaps = 58/232 (25%)

Query: 58  RFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG--HSRNINAFRRVSCYIQQ 115
             P+ +++AI+GPSGAGKS+LL++++G+ +   +G+IL NG  H+ +  A R VS  + Q
Sbjct: 21  TVPAGEIVAILGPSGAGKSTLLNLIAGFETPA-SGEILINGVDHTASPPAERPVS-MLFQ 78

Query: 116 DDRLQPLLTIENVMSL-----LGLDESQNTR-----------------SSQLSGGQKKRL 153
           ++ L   LT+   + L     L L+  Q  +                   +LSGGQ++R+
Sbjct: 79  ENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRV 138

Query: 154 SIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQC 213
           ++A       R +  ++P                       ++ LDEP + LD    ++ 
Sbjct: 139 ALA-------RCLVREQP-----------------------ILLLDEPFSALDPALRAEM 168

Query: 214 IKLLKMI-SQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
           + L+  +  ++  T++   H P     ++ D+V  L  G+   QG+T +L++
Sbjct: 169 LALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELLS 219

Length = 231

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 82.7 bits (205), Expect = 3e-17
 Identities = 64/263 (24%), Positives = 111/263 (42%), Gaps = 64/263 (24%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR-- 86
           I+ ++++ T              L ++    P  ++  I+G SGAGKS+LL +++     
Sbjct: 2   IELENVSKTFGQT---GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP 58

Query: 87  SNG---VTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTI-ENVM------------- 129
           ++G   V GQ LT      +   R+    I Q   L    T+ ENV              
Sbjct: 59  TSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEI 118

Query: 130 --------SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKK 181
                    L+GL +  +   +QLSGGQK+R++IA       R                 
Sbjct: 119 KQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIA-------RA---------------- 155

Query: 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQ 240
                  L NNP+++  DE T+ LD ++    ++LLK I+++ G TI+   H+      +
Sbjct: 156 -------LANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVV--K 206

Query: 241 MF-DQVYLLSGGQCLYQGATDQL 262
              D+V +L  G+ + +G   ++
Sbjct: 207 RICDRVAVLDQGRLVEEGTVSEV 229

Length = 339

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 79.8 bits (197), Expect = 3e-17
 Identities = 59/200 (29%), Positives = 96/200 (48%), Gaps = 26/200 (13%)

Query: 44  FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNG---- 98
           +   P +VLK L       +++A++G +GAGKS+LL  L+G  R    +G +L +G    
Sbjct: 1   YPGGP-EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ--SGAVLIDGEPLD 57

Query: 99  HSRN--INAFRRVSCYIQQ-DDRLQPLLTIENV---MSLLGLDESQNTRSSQLSGGQKKR 152
           +SR   +   +RV    Q  DD+L      ++V      LGL E++  R          R
Sbjct: 58  YSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVER----------R 107

Query: 153 LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQ 212
           +  AL  +        + PT      +KKR++IA  +   P V+ LDEPT GLD     Q
Sbjct: 108 VREALTAVGASG--LRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQ 165

Query: 213 CIKLLKMISQQGRTIICTIH 232
            + +L+ +  +G T++ + H
Sbjct: 166 MLAILRRLRAEGMTVVISTH 185

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 80.1 bits (198), Expect = 4e-17
 Identities = 59/218 (27%), Positives = 99/218 (45%), Gaps = 38/218 (17%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDV--LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR 86
           I+F ++T         K  P     L  +     + + + ++GPSGAGKS+LL ++    
Sbjct: 1   IEFINVT---------KTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYK-E 50

Query: 87  SNGVTGQILTNG------HSRNINAFRRVSCYIQQDDRLQPLLTI-ENVMSLLGLDESQN 139
               +G I  NG        R I   RR    + QD RL P   + ENV   L       
Sbjct: 51  ELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFAL------- 103

Query: 140 TRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPND----QKKRLSIALELINNPR 194
              + +   + +KR+  ALEL+       L     + P +    +++R++IA  ++N+P 
Sbjct: 104 -EVTGVPPREIRKRVPAALELVG------LSHKHRALPAELSGGEQQRVAIARAIVNSPT 156

Query: 195 VMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIH 232
           ++  DEPT  LD  +  + + LLK I++ G T++   H
Sbjct: 157 ILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATH 194

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 79.9 bits (198), Expect = 5e-17
 Identities = 58/255 (22%), Positives = 104/255 (40%), Gaps = 80/255 (31%)

Query: 30  KFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY--RS 87
           + +DLT        +   P  VL+++       + +AI+GP+GAGKS+LL  + G    +
Sbjct: 1   EVEDLTV------SYGGHP--VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT 52

Query: 88  NG---VTGQILTNGHSR----------------------------NINAFRRVSCYIQQD 116
           +G   V G+ L     R                            +   FRR+S   + D
Sbjct: 53  SGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLS---KAD 109

Query: 117 DRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNP 176
                   ++  +  +GL E  + +  +LSGGQ++R+ +A       R            
Sbjct: 110 KAK-----VDEALERVGLSELADRQIGELSGGQQQRVLLA-------RA----------- 146

Query: 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSA 236
                       L+ +P ++ LDEP  G+D ++     +LL+ + ++G TI+   H    
Sbjct: 147 ------------LVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG- 193

Query: 237 TLFQMFDQVYLLSGG 251
            + + FD+V LL+  
Sbjct: 194 LVLEYFDRVLLLNRT 208

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 80.9 bits (200), Expect = 6e-17
 Identities = 73/268 (27%), Positives = 129/268 (48%), Gaps = 50/268 (18%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           ++ +DL Y+   G        + LK +  +    +++A++GP+GAGKS+L         N
Sbjct: 2   LETRDLKYSYPDG-------TEALKGINFKAEKGEMVALLGPNGAGKSTLF-----LHFN 49

Query: 89  GV----TGQILTNGH------SRNINAFRRVSCYIQQ-DDRLQPLLTIENV----MSLLG 133
           G+    +G++L  G          +   + V    Q  DD+L      E+V    ++L G
Sbjct: 50  GILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL-G 108

Query: 134 LDESQNTRSSQLSGGQKKRLSIALELINNPRVM--FLDEPTTSNPNDQKKRLSIALELIN 191
           L + +           +KR+  AL+ +     M  F ++P       QKKR++IA  L  
Sbjct: 109 LSKEE----------VEKRVKEALKAVG----MEGFENKPPHHLSGGQKKRVAIAGILAM 154

Query: 192 NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMF-DQVYLLSG 250
            P ++ LDEPT+GLD    SQ +KLL  ++++G TII + H     L  ++ D+VY++S 
Sbjct: 155 KPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHD--VDLVPVYADKVYVMSD 212

Query: 251 GQCLYQGATDQL---VNYLSSVNLPCPK 275
           G+ + +G   ++   +  +   NL  P+
Sbjct: 213 GKIIKEGTPKEVFSDIETIRKANLRLPR 240

Length = 275

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 83.4 bits (207), Expect = 9e-17
 Identities = 56/257 (21%), Positives = 120/257 (46%), Gaps = 39/257 (15%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           ++ ++LT   +T  G        ++++       +++ I+G SG+GKS+L   L G    
Sbjct: 6   LEVENLTVEFATDGG----RVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPE 61

Query: 89  G---VTGQILTNG---HSRNINAFRRVS----CYIQQD--DRLQPLLTIENVMSLLGLDE 136
           G    +G+++ +G      +    R++       I QD    L P++TI + +       
Sbjct: 62  GGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQI------- 114

Query: 137 SQNTRSSQLSGG--QKKRLSIALELINNPRVMFLDEPTTSN--PND----QKKRLSIALE 188
                + +L G   + +    A+EL+     + L +P   +  P+      ++R+ IA+ 
Sbjct: 115 ---REALRLHGKGSRAEARKRAVELL---EQVGLPDPERRDRYPHQLSGGMRQRVMIAMA 168

Query: 189 LINNPRVMFLDEPTTGLDSQSCSQCIKLLK-MISQQGRTIICTIHQPSATLFQMFDQVYL 247
           L   P+++  DEPTT LD  + +Q + LLK +  + G  ++   H     + ++ D+V +
Sbjct: 169 LALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL-GVVAELADRVVV 227

Query: 248 LSGGQCLYQGATDQLVN 264
           +  G+ +  G T+++++
Sbjct: 228 MYKGEIVETGPTEEILS 244

Length = 539

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 83.8 bits (208), Expect = 9e-17
 Identities = 64/271 (23%), Positives = 113/271 (41%), Gaps = 71/271 (26%)

Query: 28  EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YR 86
           EI+F+++++       +  +    L N+       + +AI+G  G+GKS+LL +L G Y+
Sbjct: 463 EIEFRNVSFA------YPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ 516

Query: 87  SNGVTGQILTNGH-SRNINAF--RRVSCYIQQDDRL------------QPLLTIENVMSL 131
                G +L +G   R I+    RR   Y+ QD RL             P    E ++  
Sbjct: 517 PTE--GSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRA 574

Query: 132 L--------------GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPN 177
                          GLD     R   LSGGQ++ +++A                     
Sbjct: 575 AELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALA--------------------- 613

Query: 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSAT 237
               R      L+ +P ++ LDEPT+ +D++S  +    LK     G+T++   H+ S  
Sbjct: 614 ----RA-----LLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS-- 661

Query: 238 LFQMFDQVYLLSGGQCLYQGATDQLVNYLSS 268
           L  + D++ ++  G+ +  G  DQ++  L  
Sbjct: 662 LLDLVDRIIVMDNGRIVADGPKDQVLEALRK 692

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 79.6 bits (197), Expect = 1e-16
 Identities = 59/248 (23%), Positives = 100/248 (40%), Gaps = 60/248 (24%)

Query: 45  KQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG-----H 99
            +     L N+       + + I+G SG+GKS+L  +L+G      +G IL +G      
Sbjct: 16  GKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS-SGSILLDGKPLAPK 74

Query: 100 SRNINAFRRVSCYIQQD--DRLQPLLTIE--------------------NVMSLLGLDES 137
            R    +R V   + QD    L P  T+                      ++  +GL  S
Sbjct: 75  KRAKAFYRPVQ-MVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPS 133

Query: 138 QNTRS-SQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVM 196
              R   +LSGGQ++R++IA                             A  LI  P+++
Sbjct: 134 FLDRRPHELSGGQRQRIAIA----------------------------RA--LIPEPKLL 163

Query: 197 FLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ 256
            LDEPT+ LD    +Q + LL  + ++       I    A +  M D++ ++  GQ +  
Sbjct: 164 ILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEI 223

Query: 257 GATDQLVN 264
           G T++L++
Sbjct: 224 GPTEELLS 231

Length = 252

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 78.8 bits (195), Expect = 1e-16
 Identities = 60/261 (22%), Positives = 112/261 (42%), Gaps = 73/261 (27%)

Query: 28  EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YR 86
            I+F++++++      +  +    L N+     + + +AI+G  G+GKS+LL +L+G Y+
Sbjct: 2   RIEFRNVSFS------YPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK 55

Query: 87  SNGVTGQILTNGH-SRNINAF--RRVSCYIQQDDRL------------QPLLT---IENV 128
                G +L +G   R ++    RR   Y+ QD  L             PL     I   
Sbjct: 56  PTS--GSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRA 113

Query: 129 MSLLGLDESQNT-----------RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPN 177
             L G+ +  N            R   LSGGQ++ +++A                     
Sbjct: 114 AELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALA--------------------- 152

Query: 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK-MISQQGRTIICTIHQPSA 236
               R      L+N+P ++ LDEPT+ +D  S  +  + L+ ++    +T+I   H+PS 
Sbjct: 153 ----RA-----LLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPS- 200

Query: 237 TLFQMFDQVYLLSGGQCLYQG 257
            L  + D++ ++  G+ +  G
Sbjct: 201 -LLDLVDRIIVMDSGRIVADG 220

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 78.4 bits (194), Expect = 2e-16
 Identities = 59/193 (30%), Positives = 89/193 (46%), Gaps = 38/193 (19%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           I+F++++     G       ++ L+++    P  + + + GPSGAGKS+LL ++  Y   
Sbjct: 2   IRFENVSKAYPGG-------REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLI--YGEE 52

Query: 89  GVT-GQILTNGHS------RNINAFRRVSCYIQQDDRLQPLLTI-ENV------------ 128
             T G+IL NGH       R I   RR    + QD RL P  T+ ENV            
Sbjct: 53  RPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPR 112

Query: 129 ------MSLL---GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQ 179
                   +L   GL        SQLSGG+++R++IA  ++N P V+  DEPT +   D 
Sbjct: 113 EIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDL 172

Query: 180 KKRLSIALELINN 192
              +    E IN 
Sbjct: 173 SWEIMRLFEEINR 185

Length = 223

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 77.9 bits (192), Expect = 2e-16
 Identities = 57/224 (25%), Positives = 101/224 (45%), Gaps = 58/224 (25%)

Query: 59  FPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG--HSRNINAFRRVSCYIQQD 116
           F   ++ AI+GPSG+GKS+LL++++G+ +   +G++L NG   +    A R VS  + Q+
Sbjct: 21  FAQGEITAIVGPSGSGKSTLLNLIAGFET-PQSGRVLINGVDVTAAPPADRPVS-MLFQE 78

Query: 117 DRLQPLLTIENVMSL----------------------LGLDESQNTRSSQLSGGQKKRLS 154
           + L   LT+E  + L                      +GL   +     +LSGG+++R++
Sbjct: 79  NNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVA 138

Query: 155 IALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCI 214
           +A       RV+  D+P                       V+ LDEP   LD    ++ +
Sbjct: 139 LA-------RVLVRDKP-----------------------VLLLDEPFAALDPALRAEML 168

Query: 215 KL-LKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
            L L + ++   T++   HQP     ++  +V  L  G+   QG
Sbjct: 169 DLVLDLHAETKMTVLMVTHQPEDAK-RLAQRVVFLDNGRIAAQG 211

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 82.1 bits (203), Expect = 3e-16
 Identities = 61/220 (27%), Positives = 95/220 (43%), Gaps = 64/220 (29%)

Query: 46  QEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVL-------SG-YRSNGVTGQILTN 97
           +E  +VLK +     + +++AI+G SG+GKS+L+++L       SG YR   V GQ +  
Sbjct: 18  EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYR---VAGQDVAT 74

Query: 98  GHSRNINAFRRVSC-YIQQDDRLQPLLTIE-NV---------------------MSLLGL 134
             +  +   RR    +I Q   L   LT   NV                     +  LGL
Sbjct: 75  LDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGL 134

Query: 135 DESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPR 194
           ++    + SQLSGGQ++R+SIA  L+N  +V+  DEPT +                    
Sbjct: 135 EDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGA-------------------- 174

Query: 195 VMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQP 234
                     LDS S  + + +L  +  +G T+I   H P
Sbjct: 175 ----------LDSHSGEEVMAILHQLRDRGHTVIIVTHDP 204

Length = 648

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 78.0 bits (193), Expect = 3e-16
 Identities = 51/194 (26%), Positives = 94/194 (48%), Gaps = 46/194 (23%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           ++FK++T+       +  +   VL+++    P+ + +A++GPSG+GKS+L++++   R  
Sbjct: 1   VEFKNVTF------RYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFY 52

Query: 89  GVT-GQILTNGHS-RNI--NAFRRVSCYIQQDDRLQPLL---TIEN-------------- 127
            V  G+IL +GH  R+    + RR    + QD      L   T+                
Sbjct: 53  DVDSGRILIDGHDVRDYTLASLRRQIGLVSQD----VFLFNDTVAENIAYGRPGATREEV 108

Query: 128 ------------VMSL-LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
                       +M L  G D     R  +LSGGQ++R++IA  L+ +P ++ LDE T++
Sbjct: 109 EEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSA 168

Query: 175 NPNDQKKRLSIALE 188
              + ++ +  ALE
Sbjct: 169 LDTESERLVQAALE 182

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 77.5 bits (192), Expect = 4e-16
 Identities = 52/230 (22%), Positives = 97/230 (42%), Gaps = 61/230 (26%)

Query: 60  PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINAFRRVS---CYIQQ 115
           P  +++A++G +GAGK++LL  + G      +G I  +G     +    R      Y+ +
Sbjct: 24  PEGEIVALLGRNGAGKTTLLKTIMGL-LPPRSGSIRFDGRDITGLPPHERARAGIGYVPE 82

Query: 116 DDRLQPLLTI-ENVMSLLG----------------------LDESQNTRSSQLSGGQKKR 152
             R+ P LT+ EN+  LLG                      L E +   +  LSGG+++ 
Sbjct: 83  GRRIFPELTVEENL--LLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQM 140

Query: 153 LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQ 212
           L+IA       R                        L++ P+++ LDEP+ GL  +   +
Sbjct: 141 LAIA-------RA-----------------------LMSRPKLLLLDEPSEGLAPKIVEE 170

Query: 213 CIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
             + ++ +  +G TI+         L ++ D+ Y+L  G+ + +G   +L
Sbjct: 171 IFEAIRELRDEGVTILLVEQNARFAL-EIADRAYVLERGRVVLEGTAAEL 219

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 77.9 bits (192), Expect = 4e-16
 Identities = 51/152 (33%), Positives = 80/152 (52%), Gaps = 30/152 (19%)

Query: 50  DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-INAFRR 108
           DVL N+       +++AI+G SG+GKS+LL +L G  +   +G ++ NG   + +++  +
Sbjct: 23  DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP-TSGDVIFNGQPMSKLSSAAK 81

Query: 109 VSC------YIQQDDRLQPLLT-IENV-MSLL--------------------GLDESQNT 140
                    +I Q   L P  T +ENV M LL                    GL+   N 
Sbjct: 82  AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANH 141

Query: 141 RSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
           R S+LSGG+++R++IA  L+NNPR++  DEPT
Sbjct: 142 RPSELSGGERQRVAIARALVNNPRLVLADEPT 173

Length = 233

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 77.7 bits (192), Expect = 4e-16
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 28/163 (17%)

Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT-GQILTNGHS-RNINAFRR 108
            L  +       +   ++GPSG GK++LL +++G+     T G+IL +G    N+   +R
Sbjct: 15  ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFE--TPTSGEILLDGKDITNLPPHKR 72

Query: 109 VSCYIQQDDRLQPLLTI-ENV---------------------MSLLGLDESQNTRSSQLS 146
               + Q+  L P LT+ EN+                     + L+ L+   N + SQLS
Sbjct: 73  PVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLS 132

Query: 147 GGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL 189
           GGQ++R++IA  L+N P+V+ LDEP  +   D K R  + LEL
Sbjct: 133 GGQQQRVAIARALVNEPKVLLLDEPLGA--LDLKLRKDMQLEL 173

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 76.8 bits (190), Expect = 5e-16
 Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 37/157 (23%)

Query: 48  PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT----GQILTNG----- 98
              VLK +       +++ I+GPSG+GKS+LL  +     N +     G I+ +G     
Sbjct: 12  DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCI-----NLLEEPDSGTIIIDGLKLTD 66

Query: 99  HSRNINAFRRVSCYIQQDDRLQPLLTI-ENV-------------------MSLL---GLD 135
             +NIN  R+    + Q   L P LT+ EN+                   + LL   GL 
Sbjct: 67  DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLA 126

Query: 136 ESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
           +  +   +QLSGGQ++R++IA  L  NP+VM  DEPT
Sbjct: 127 DKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPT 163

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 77.2 bits (191), Expect = 5e-16
 Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 37/170 (21%)

Query: 40  TGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG----YRSNGVTGQIL 95
             L      K  LK++    P  ++ A++GPSG GKS+LL +L+            G++L
Sbjct: 4   RDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVL 63

Query: 96  TNGHSRNINAF--------RRVSCYIQQ---------------------DDRLQPLLTIE 126
            +G  ++I           RRV    Q+                       + +    +E
Sbjct: 64  LDG--KDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVE 121

Query: 127 NVMSLLGLDESQNTRSS--QLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
             +    L +    R     LSGGQ++RL +A  L N P V+ LDEPT++
Sbjct: 122 EALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA 171

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 77.2 bits (191), Expect = 6e-16
 Identities = 48/243 (19%), Positives = 104/243 (42%), Gaps = 60/243 (24%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNG--------H 99
           + V+  +       +++ ++GP+GAGK++   ++ G  + +   G+IL +G        H
Sbjct: 13  RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDS--GKILLDGQDITKLPMH 70

Query: 100 SR----------NINAFRRVSCY--------IQQDDRLQPLLTIENVMSLLGLDESQNTR 141
            R            + FR+++          I+   + +    +E ++    +   + ++
Sbjct: 71  KRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSK 130

Query: 142 SSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP 201
           +S LSGG+++R+ IA       R                        L  NP+ + LDEP
Sbjct: 131 ASSLSGGERRRVEIA-------RA-----------------------LATNPKFLLLDEP 160

Query: 202 TTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ 261
             G+D  +     K++K++  +G  ++ T H    TL  + D+ Y++  G+ L +G  ++
Sbjct: 161 FAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETL-SITDRAYIIYEGKVLAEGTPEE 219

Query: 262 LVN 264
           +  
Sbjct: 220 IAA 222

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 76.8 bits (190), Expect = 7e-16
 Identities = 57/264 (21%), Positives = 107/264 (40%), Gaps = 72/264 (27%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           ++ K+L+ +  TG G  +     L ++       + + ++G SG+GKS+L   + G    
Sbjct: 2   LEVKNLSVSFPTGGGSVK----ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP 57

Query: 89  GVTGQILTNGHSRNINA-------FRRVSCYIQQDDR--LQPLLTIE------------- 126
             +G I+ +G      +        + +   + QD    L P +TI              
Sbjct: 58  -TSGSIIFDGKDLLKLSRRLRKIRRKEIQ-MVFQDPMSSLNPRMTIGEQIAEPLRIHGKL 115

Query: 127 -----------NVMSLLGLDESQ-NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
                       ++  +GL E   N    +LSGGQ++R++IA  L  NP++         
Sbjct: 116 SKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKL--------- 166

Query: 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQ 233
                         LI        DEPT+ LD    +Q + LLK + ++ G T++   H 
Sbjct: 167 --------------LI-------ADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHD 205

Query: 234 PSATLFQMFDQVYLLSGGQCLYQG 257
               + ++ D+V ++  G+ + +G
Sbjct: 206 LGV-VAKIADRVAVMYAGKIVEEG 228

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 76.9 bits (190), Expect = 7e-16
 Identities = 60/265 (22%), Positives = 108/265 (40%), Gaps = 72/265 (27%)

Query: 28  EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YR 86
           EI+F+++ ++           K VLK++       + +AI+GP+GAGK++L+++L   Y 
Sbjct: 2   EIEFENVNFSYDEK-------KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD 54

Query: 87  SNGVTGQILTNG---HSRNINAFRRVSCYIQQDDRLQPLLTIEN---------------- 127
                GQIL +G      +  + R +   + QD  L     +EN                
Sbjct: 55  PQK--GQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEA 112

Query: 128 ---------VMSLL-GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPN 177
                    +M L  G D         LS G+++ L+IA  ++ +P+++ LDE T++   
Sbjct: 113 AKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDT 172

Query: 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSAT 237
           + +K +  ALE +                                 GRT I   H+ S  
Sbjct: 173 ETEKLIQEALEKLMK-------------------------------GRTSIIIAHRLSTI 201

Query: 238 LFQMFDQVYLLSGGQCLYQGATDQL 262
                D++ +L  G+ + +G  D+L
Sbjct: 202 KNA--DKILVLDDGKIIEEGTHDEL 224

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 23/120 (19%)

Query: 76  SSLLDVLSGYRSNGVTGQILTNGHSRN----INAFRRVSCYIQQDDRLQPLLT------- 124
           S+LL +++G      +G IL +G            R+    + QD +L P LT       
Sbjct: 1   STLLKLITG-LLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFF 59

Query: 125 ----------IENVMSLLGLDESQNT-RSSQLSGGQKKRLSIALELINNPRVMFLDEPTT 173
                      E  +  +GL +  +      LSGGQK+R++IA  L+  P+++ LDEPT 
Sbjct: 60  GLRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 76.4 bits (188), Expect = 1e-15
 Identities = 55/226 (24%), Positives = 109/226 (48%), Gaps = 17/226 (7%)

Query: 44  FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI 103
           +K +   +L N+  R    +++ I+G SG+GKS+L  ++  +      G++L +GH   +
Sbjct: 10  YKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV-PENGRVLVDGHDLAL 68

Query: 104 ---NAFRRVSCYIQQDDRLQPLLTIENVMSL-LGLDESQNTRSSQLSGGQK--KRLSIAL 157
                 RR    + Q++ L      +N+     G+   +   +++L+G       L    
Sbjct: 69  ADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGY 128

Query: 158 ELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL 217
           + I       + E        Q++R++IA  LI+NPR++  DE T+ LD +S    ++ +
Sbjct: 129 DTI-------VGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNM 181

Query: 218 KMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263
             I   GRT+I   H+ S    +  D++ ++  G+ + QG+ D+L+
Sbjct: 182 HDIC-AGRTVIIIAHRLSTV--KNADRIIVMEKGRIVEQGSHDELL 224

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 77.4 bits (190), Expect = 1e-15
 Identities = 70/261 (26%), Positives = 125/261 (47%), Gaps = 30/261 (11%)

Query: 38  VSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGV 90
           V+  LGF    K VL  +   FP+  + ++MGP+G+GK++ L       D +SGYR    
Sbjct: 25  VNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYR---Y 79

Query: 91  TGQILTNGHS----RNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLS 146
           +G +L  G S    R++  FRR    + Q     P+  ++NV++  G+   +     +  
Sbjct: 80  SGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLA--GVRAHKLVPRKEFR 137

Query: 147 GGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLD 206
           G  + RL+  + L +  +    D P   +   Q++ L +A  L  NP V+ LDEPT+ LD
Sbjct: 138 GVAQARLT-EVGLWDAVKDRLSDSPFRLS-GGQQQLLCLARTLAVNPEVLLLDEPTSALD 195

Query: 207 SQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYL 266
             +  +  + ++ ++ +   II T +   A   ++ D+  L   G+ + +G T+QL +  
Sbjct: 196 PTTTEKIEEFIRSLADRLTVIIVTHNLAQAA--RISDRAALFFDGRLVEEGPTEQLFS-- 251

Query: 267 SSVNLPCPKYHNPADFVIELA 287
                  PK+   A +V  L+
Sbjct: 252 ------SPKHAETARYVAGLS 266

Length = 276

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 59/227 (25%), Positives = 90/227 (39%), Gaps = 64/227 (28%)

Query: 61  SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH-----SRNIN---AFRRVSCY 112
           + ++  I G SGAGKS+LL  ++G       G I+ NG       + IN     R++   
Sbjct: 22  NEEVTGIFGASGAGKSTLLRCIAGLEKPDG-GTIVLNGTVLFDSRKKINLPPQQRKIG-L 79

Query: 113 IQQDDRLQPLLTI-ENV-------------------MSLLGLDESQNTRSSQLSGGQKKR 152
           + Q   L P L + EN+                   + LLGLD   N   +QLSGG+K+R
Sbjct: 80  VFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQR 139

Query: 153 LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQ 212
           +++A       R                        L   P ++ LDEP + LD     Q
Sbjct: 140 VALA-------RA-----------------------LAAQPELLLLDEPFSALDRALRLQ 169

Query: 213 CIKLLKMISQ--QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
            +  LK I +      I  T H  S     + D++ ++  G+  Y G
Sbjct: 170 LLPELKQIKKNLNIPVIFVT-HDLS-EAEYLADRIVVMEDGRLQYIG 214

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 78.5 bits (194), Expect = 1e-15
 Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 41/153 (26%)

Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNG--------HSR 101
            + ++       + + ++GPSG GK++LL +++G  + +   G+IL +G          R
Sbjct: 20  AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS--GEILLDGEDITDVPPEKR 77

Query: 102 NINAFRRVSCYIQQDDRLQPLLTI-ENV----------------------MSLLGLDESQ 138
            I         + Q   L P +T+ ENV                      + L+GL+   
Sbjct: 78  PIG-------MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFA 130

Query: 139 NTRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
           + +  QLSGGQ++R+++A  L+  P+V+ LDEP
Sbjct: 131 DRKPHQLSGGQQQRVALARALVPEPKVLLLDEP 163

Length = 352

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 74.7 bits (184), Expect = 1e-15
 Identities = 54/232 (23%), Positives = 101/232 (43%), Gaps = 57/232 (24%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRS 87
           +   +++++      + ++ + VLKNL       + IA++G SG+GKS+LL +L+G  + 
Sbjct: 1   LSINNVSFS------YPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP 54

Query: 88  NGVTGQILTNGH--SRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQL 145
               G+I  +G   S    A   +   + Q    +P L    + + LG          + 
Sbjct: 55  Q--QGEITLDGVPVSDLEKALSSLISVLNQ----RPYLFDTTLRNNLGR---------RF 99

Query: 146 SGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL 205
           SGG+++RL++A       R++  D P                       ++ LDEPT GL
Sbjct: 100 SGGERQRLALA-------RILLQDAP-----------------------IVLLDEPTVGL 129

Query: 206 DSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
           D  +  Q + L+     + +T+I   H  +    +  D++  L  G+ + QG
Sbjct: 130 DPITERQLLSLI-FEVLKDKTLIWITHHLTG--IEHMDKILFLENGKIIMQG 178

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 76.7 bits (189), Expect = 1e-15
 Identities = 44/152 (28%), Positives = 80/152 (52%), Gaps = 25/152 (16%)

Query: 42  LGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR 101
           L ++ +P+  L+++     S +L+ ++GPSG GK++LL++++G+ +    G I  NG  R
Sbjct: 11  LSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP-SRGSIQLNG--R 67

Query: 102 NINAFRRVSCYIQQDDRLQPLLT-IENV---------------------MSLLGLDESQN 139
            I         + Q++ L P L  I+NV                     ++L+GL+ +++
Sbjct: 68  RIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEH 127

Query: 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
               QLSGG ++R+ IA  L   P+++ LDEP
Sbjct: 128 KYIWQLSGGMRQRVGIARALAVEPQLLLLDEP 159

Length = 259

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 75.3 bits (186), Expect = 2e-15
 Identities = 68/266 (25%), Positives = 124/266 (46%), Gaps = 72/266 (27%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           I+F+++T+    G       + VLK++    P+ + +AI+GPSG+GKS++L +L  +R  
Sbjct: 1   IEFENVTFAYDPG-------RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLL--FRFY 51

Query: 89  GVT-GQILTNGHS-RNI--NAFRRVSCYIQQDDRL------------QPLLTIENVM--- 129
            V+ G IL +G   R +  ++ RR    + QD  L            +P  T E V+   
Sbjct: 52  DVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAA 111

Query: 130 -------SLLGLDESQNT----RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPND 178
                   ++   +  +T    R  +LSGG+K+R++IA       R              
Sbjct: 112 KAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIA-------RA------------- 151

Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATL 238
                     ++ NP ++ LDE T+ LD+ +  +    L+ +S +GRT I   H+ S T+
Sbjct: 152 ----------ILKNPPILLLDEATSALDTHTEREIQAALRDVS-KGRTTIVIAHRLS-TI 199

Query: 239 FQMFDQVYLLSGGQCLYQGATDQLVN 264
               D++ +L  G+ + +G  ++L+ 
Sbjct: 200 VNA-DKIIVLKDGRIVERGTHEELLA 224

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 75.1 bits (185), Expect = 3e-15
 Identities = 54/217 (24%), Positives = 102/217 (47%), Gaps = 19/217 (8%)

Query: 52  LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY-RSNGVTGQILTNGHS--RNINAFRR 108
           ++ +  R    ++  ++GP+GAGK++ + +L+   +     G+    GH   R     RR
Sbjct: 16  VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTS--GRATVAGHDVVREPREVRR 73

Query: 109 VSCYIQQDDRLQPLLT-IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMF 167
               + QD  +   LT  EN+     L        ++     ++R+   L+ +    +  
Sbjct: 74  RIGIVFQDLSVDDELTGWENLYIHARL---YGVPGAER----RERIDELLDFVG--LLEA 124

Query: 168 LDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL-KMISQQGRT 226
            D    +     ++RL IA  L++ P V+FLDEPT GLD Q+ +   + + K+  + G T
Sbjct: 125 ADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMT 184

Query: 227 IICTIH-QPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
           I+ T H    A   Q+ D+V ++  G+ + +G  ++L
Sbjct: 185 ILLTTHYMEEAE--QLCDRVAIIDHGRIIAEGTPEEL 219

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 79.0 bits (195), Expect = 3e-15
 Identities = 60/242 (24%), Positives = 114/242 (47%), Gaps = 25/242 (10%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           I F+++ +       +  +  +VL NL       + I I+GPSG+GKS+L  +L    + 
Sbjct: 456 ITFENIRFR------YAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP 509

Query: 89  GVTGQILTNGHSRNI---NAFRRVSCYIQQDDRLQPLLTIENV-MSLLGLDESQNTRSSQ 144
              GQ+L +G    I      RR    + Q++ L      +N+ +   G        +++
Sbjct: 510 Q-HGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAK 568

Query: 145 LSGGQKKRLSIALELINNPRVMF---LDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP 201
           L+G        A + I+     +   + E   +    Q++R++IA  L+ NPR++  DE 
Sbjct: 569 LAG--------AHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEA 620

Query: 202 TTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ 261
           T+ LD +S +  ++ ++ I  +GRT+I   H+ S    +  D++ +L  GQ    G  ++
Sbjct: 621 TSALDYESEALIMRNMREIC-RGRTVIIIAHRLSTV--RACDRIIVLEKGQIAESGRHEE 677

Query: 262 LV 263
           L+
Sbjct: 678 LL 679

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 74.6 bits (184), Expect = 4e-15
 Identities = 59/254 (23%), Positives = 103/254 (40%), Gaps = 70/254 (27%)

Query: 40  TGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNG 98
            GL F+   +  L ++       + +A++GP+GAGKS+L  +L+  Y +    GQI   G
Sbjct: 5   AGLSFRYGARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ--EGQISVAG 62

Query: 99  HS-RN--INAFRRVSCYIQQD---------------------DRLQPLLTIENVMSLLGL 134
           H  R     A  R+    QQ                       R +    I  +++ LGL
Sbjct: 63  HDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGL 122

Query: 135 DESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPR 194
            E  + +  +L+GG ++R+ IA       R                        L++ P 
Sbjct: 123 AERADDKVRELNGGHRRRVEIA-------RA-----------------------LLHRPA 152

Query: 195 VMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIH-----QPSATLFQMFDQVYLL 248
           ++ LDEPT GLD  S +     ++ +++ QG +++   H     +         D++ +L
Sbjct: 153 LLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEAD-------DRLVVL 205

Query: 249 SGGQCLYQGATDQL 262
             G+ L  GA  +L
Sbjct: 206 HRGRVLADGAAAEL 219

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 73.6 bits (181), Expect = 5e-15
 Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 21/144 (14%)

Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG--HSRNINAFRR 108
           + + L     + + + + GP+G GK++LL +L+G      +G++  NG   +   +   R
Sbjct: 15  LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL-LRPDSGEVRWNGTALAEQRDEPHR 73

Query: 109 VSCYIQQDDRLQPLLT------------------IENVMSLLGLDESQNTRSSQLSGGQK 150
              Y+     L+P L+                  IE+ ++ +GL   ++  ++QLS GQ+
Sbjct: 74  NILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQ 133

Query: 151 KRLSIALELINNPRVMFLDEPTTS 174
           +RL++A   ++   +  LDEPTT+
Sbjct: 134 RRLALARLWLSRAPLWILDEPTTA 157

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 73.9 bits (182), Expect = 5e-15
 Identities = 55/173 (31%), Positives = 81/173 (46%), Gaps = 34/173 (19%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           +K ++L      G    +    VLK +       +++AI+G SG+GKS+LL +L G   N
Sbjct: 2   LKCENLGKRYQEG----KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL-DN 56

Query: 89  GVTGQILTNGH------SRNINAFRRVSC-YIQQDDRLQPLLTI-ENV-MSLL------- 132
             +G++L NG       S      R     +I Q   L P  T  ENV M LL       
Sbjct: 57  PTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVK 116

Query: 133 -------------GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
                        GL+   N R S+LSGG+++R++IA  L+N P ++  DEPT
Sbjct: 117 EAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPT 169

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 74.9 bits (185), Expect = 6e-15
 Identities = 63/267 (23%), Positives = 106/267 (39%), Gaps = 75/267 (28%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           I+ + +T             + +L  +    P  +++AI+G SG+GKS+LL ++ G    
Sbjct: 9   IEVRGVT--------KSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP 60

Query: 89  GVTGQILTNGHS-------RNINAFRRVSCYIQQDDRLQPLLTIENVM------------ 129
              G+IL +G               +R+    QQ      L   ENV             
Sbjct: 61  D-KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPES 119

Query: 130 ----------SLLGLDESQNTR-SSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPND 178
                      L+GL  +      S+LSGG +KR+++A       R + LD         
Sbjct: 120 LIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALA-------RAIALD--------- 163

Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLD---SQSCSQCIKLLKMISQQGRTIICTIHQPS 235
                         P ++FLDEPT+GLD   +    + I+ L      G T+I   H   
Sbjct: 164 --------------PELLFLDEPTSGLDPISAGVIDELIRELN--DALGLTVIMVTHDLD 207

Query: 236 ATLFQMFDQVYLLSGGQCLYQGATDQL 262
            +L  + D+V +L+ G+ + +G  ++L
Sbjct: 208 -SLLTIADRVAVLADGKVIAEGTPEEL 233

Length = 263

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 75.8 bits (187), Expect = 7e-15
 Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 34/168 (20%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHSRNINAF- 106
            +VLK++       + + ++GPSG GKS+LL +++G        G+IL +G  R++    
Sbjct: 16  FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS--GEILIDG--RDVTDLP 71

Query: 107 ---RRVSCYIQQDDRLQPLLT----------------------IENVMSLLGLDESQNTR 141
              R ++  + Q+  L P +T                      ++ V  LLGL+   N +
Sbjct: 72  PEKRGIA-MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRK 130

Query: 142 SSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL 189
             QLSGGQ++R+++A  L+  P+V  LDEP  SN  D K R+ +  E+
Sbjct: 131 PLQLSGGQRQRVALARALVRKPKVFLLDEP-LSNL-DAKLRVLMRSEI 176

Length = 338

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 73.4 bits (181), Expect = 7e-15
 Identities = 53/219 (24%), Positives = 100/219 (45%), Gaps = 33/219 (15%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHSRNINAFR 107
           K VL ++       ++   +GP+GAGK++ + ++ G  + +          + +NI A R
Sbjct: 13  KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALR 72

Query: 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMF 167
           R+   I+      P LT    + LL            L G +KKR+   L+++       
Sbjct: 73  RIGALIEAPG-FYPNLTARENLRLLAR----------LLGIRKKRIDEVLDVVG------ 115

Query: 168 LDEPTTSNPNDQK---------KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK 218
                  +   +K         +RL IAL L+ NP ++ LDEPT GLD     +  +L+ 
Sbjct: 116 -----LKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELIL 170

Query: 219 MISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
            +  QG T++ + H  S  + ++ D++ +++ G+ + +G
Sbjct: 171 SLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 74.3 bits (183), Expect = 8e-15
 Identities = 57/226 (25%), Positives = 102/226 (45%), Gaps = 29/226 (12%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG-VTGQILTNGHSRNINAF- 106
           K +L +L    P+ ++ A++GP+G GKS+LL   +  R     +G +        I+   
Sbjct: 15  KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA--RLLTPQSGTVFLGDKP--ISMLS 70

Query: 107 -----RRVSCYIQQDDRLQPLLTIE--NVMSLLGLDES-QNTRSSQLSGGQKKRLSIALE 158
                RR++   Q        LT E   V  L+    S   +   +LS     R++ A+E
Sbjct: 71  SRQLARRLALLPQH------HLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAME 124

Query: 159 LINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK 218
                     D   T     Q++R  +A+ L  +  V+ LDEPTT LD     + ++L++
Sbjct: 125 QTRI--NHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMR 182

Query: 219 MISQQGRTIICTIH---QPSATLFQMFDQVYLLSGGQCLYQGATDQ 261
            ++ QG+T++  +H   Q S    +  D + +L+ G  + QG  ++
Sbjct: 183 ELNTQGKTVVTVLHDLNQAS----RYCDHLVVLANGHVMAQGTPEE 224

Length = 255

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 73.7 bits (181), Expect = 9e-15
 Identities = 40/144 (27%), Positives = 74/144 (51%), Gaps = 24/144 (16%)

Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG--------HSRN 102
            L ++    P+  L+A++GPSG+GKS+LL +++G      +G+I  NG          R 
Sbjct: 15  ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD-SGRIRLNGQDATRVHARDRK 73

Query: 103 IN-------AFRRVSCY--------IQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSG 147
           I         F+ ++          I++  + +    +E ++ L+ L+   +   +QLSG
Sbjct: 74  IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSG 133

Query: 148 GQKKRLSIALELINNPRVMFLDEP 171
           GQ++R+++A  L   P+V+ LDEP
Sbjct: 134 GQRQRVALARALAVEPQVLLLDEP 157

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 73.8 bits (181), Expect = 1e-14
 Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 25/227 (11%)

Query: 50  DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG----YRSNGVTGQILTNGHS----R 101
           +VL  +    P N + A+MGPSG+GKS+LL V +     Y    V+G++  +G       
Sbjct: 17  EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76

Query: 102 NINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALEL-- 159
            I   RRV    Q  + +  L   ENV   L L+    ++        ++R+  ALE   
Sbjct: 77  VIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKE-----LQERVRWALEKAQ 131

Query: 160 ----INNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIK 215
               + +     LD P       Q++RL IA  L   P V+  DEPT  LD ++ ++ I+
Sbjct: 132 LWDEVKDR----LDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAK-IE 186

Query: 216 LLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
            L +  ++  TI+   H P     ++ D V  L  GQ +  G T ++
Sbjct: 187 SLFLELKKDMTIVLVTHFPQQAA-RISDYVAFLYKGQIVEWGPTREV 232

Length = 250

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 21/182 (11%)

Query: 58  RFPSNQLIAIMGPSGAGKSSLLDVLSGY-RSNGVTGQILTNGHS--RNINAFRRVSCYIQ 114
           +    ++   +GP+GAGK++ + +L+   R     G     G+   R     RR    + 
Sbjct: 15  KVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTS--GTARVAGYDVVREPRKVRRSIGIVP 72

Query: 115 QDDRLQPLLT-IENVM---SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDE 170
           Q   +   LT  EN+     L GL + +           ++R    LEL         D 
Sbjct: 73  QYASVDEDLTGRENLEMMGRLYGLPKDE----------AEERAEELLELFE--LGEAADR 120

Query: 171 PTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICT 230
           P  +     ++RL IA  LI+ P V+FLDEPTTGLD ++       ++ + ++G TI+ T
Sbjct: 121 PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLT 180

Query: 231 IH 232
            H
Sbjct: 181 TH 182

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 74.3 bits (182), Expect = 1e-14
 Identities = 65/221 (29%), Positives = 106/221 (47%), Gaps = 24/221 (10%)

Query: 61  SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH--------------SRNINAF 106
             +++A++GPSG+GKS+LL  LSG     +TG      H              +R+I   
Sbjct: 29  HGEMVALLGPSGSGKSTLLRHLSGL----ITGDKSAGSHIELLGRTVQREGRLARDIRKS 84

Query: 107 RRVSCYI-QQDDRLQPLLTIENVM-SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPR 164
           R  + YI QQ + +  L  +ENV+   LG      T  S  +  QK+R   AL  +    
Sbjct: 85  RANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVG--M 142

Query: 165 VMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ- 223
           V F  +  ++    Q++R++IA  L+   +V+  DEP   LD +S    +  L+ I+Q  
Sbjct: 143 VHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQND 202

Query: 224 GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
           G T++ T+HQ    L +  +++  L  G   Y G++ Q  N
Sbjct: 203 GITVVVTLHQVDYAL-RYCERIVALRQGHVFYDGSSQQFDN 242

Length = 262

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 75.5 bits (186), Expect = 1e-14
 Identities = 50/228 (21%), Positives = 94/228 (41%), Gaps = 54/228 (23%)

Query: 60  PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH-----SRNIN--AFRRVSCY 112
           P+  + A+ GPSG+GK+SL+++++G       G+I  NG       + I     +R   Y
Sbjct: 22  PARGITALFGPSGSGKTSLINMIAGLTRPDE-GRIELNGRVLVDAEKGIFLPPEKRRIGY 80

Query: 113 IQQDDRLQPLLT----------------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIA 156
           + QD RL P  T                 + +++LLG++   +     LSGG+K+R++I 
Sbjct: 81  VFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIG 140

Query: 157 LELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKL 216
             L+  P ++ +DEP  S                       LD P          + +  
Sbjct: 141 RALLTAPELLLMDEPLAS-----------------------LDLPRKR-------EILPY 170

Query: 217 LKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
           L+ +  +    I  +      + ++ D+V +L  G+    G  +++  
Sbjct: 171 LERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWG 218

Length = 352

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 72.7 bits (179), Expect = 1e-14
 Identities = 59/183 (32%), Positives = 91/183 (49%), Gaps = 26/183 (14%)

Query: 65  IAIM-GPSGAGKSSLLDVLSGYRS--NG---VTGQILTNGHSRNINAFRRVSCYIQQDDR 118
           I I+ GPSG+GK++LL ++ G RS   G   V GQ L     + +   RR   YI Q   
Sbjct: 33  IVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHN 92

Query: 119 LQPLLTIE-NVMSLLGLDESQNTRSSQLSGGQKKRLSIA-LELINNPRVMFLDEPTTSNP 176
           L   LT   NV   + L+   N     LS  + +  + A LE +       L +     P
Sbjct: 93  LLGFLTARQNVQ--MALELQPN-----LSYQEARERARAMLEAVG------LGDHLDYYP 139

Query: 177 ND----QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL-KMISQQGRTIICTI 231
           ++    QK+R++IA  L++ P+++  DEPT  LDS+S    ++L+ K+  +QG TI+   
Sbjct: 140 HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVT 199

Query: 232 HQP 234
           H  
Sbjct: 200 HDN 202

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 73.0 bits (180), Expect = 2e-14
 Identities = 63/262 (24%), Positives = 113/262 (43%), Gaps = 63/262 (24%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG--YR 86
           I+ K+++       G        LK++    P  ++  I+G SGAGKS+L+  ++G    
Sbjct: 2   IELKNVSKVFGDTGGKVT----ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP 57

Query: 87  SNG---VTGQILTNGHSRNINAFRRVSCYI-QQDDRLQPLLTIENVM------------- 129
           ++G   V G  LT    + +   RR    I Q  + L      ENV              
Sbjct: 58  TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEI 117

Query: 130 --------SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKK 181
                    L+GL++  +   +QLSGGQK+R+ IA  L NNP+V+  DE T++       
Sbjct: 118 EERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSA------- 170

Query: 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQ 240
                                  LD ++    + LL+ I+++ G TI+   H+    + +
Sbjct: 171 -----------------------LDPETTQSILALLRDINRELGLTIVLITHEME-VVKR 206

Query: 241 MFDQVYLLSGGQCLYQGATDQL 262
           + D+V ++  G+ + +G  +++
Sbjct: 207 ICDRVAVMEKGEVVEEGTVEEV 228

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 72.2 bits (178), Expect = 2e-14
 Identities = 44/202 (21%), Positives = 81/202 (40%), Gaps = 49/202 (24%)

Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVS 110
           +   L     + + + + GP+G+GK++LL +++G       G I  +G   +        
Sbjct: 17  LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL-LPPAAGTIKLDGGDIDDPDVAEAC 75

Query: 111 CYIQQDDRLQPLLTI-ENV-----------------MSLLGLDESQNTRSSQLSGGQKKR 152
            Y+   + ++P LT+ EN+                 +  +GL    +     LS GQK+R
Sbjct: 76  HYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRR 135

Query: 153 LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQ 212
           +++A                         RL     L++N  +  LDEPT  LD+ + + 
Sbjct: 136 VALA-------------------------RL-----LVSNRPIWILDEPTAALDAAAVAL 165

Query: 213 CIKLLKMISQQGRTIICTIHQP 234
             +L++    QG  +I   H P
Sbjct: 166 FAELIRAHLAQGGIVIAATHIP 187

Length = 207

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 73.3 bits (181), Expect = 2e-14
 Identities = 50/168 (29%), Positives = 73/168 (43%), Gaps = 54/168 (32%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQILTNGH-- 99
           K  LK++    P N++ A++GPSG GKS+LL       D++ G R   V G++L +G   
Sbjct: 20  KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR---VEGEVLLDGKNI 76

Query: 100 ---SRNINAFRR-VSCYIQQDDRLQPL-LTI-ENVM-------------------SLLG- 133
                ++   RR V    Q   +  P  ++I +NV                    SL   
Sbjct: 77  YDPKVDVVELRRRVGMVFQ---KPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKA 133

Query: 134 ---------LDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
                    L +S       LSGGQ++RL IA  L   P V+ +DEPT
Sbjct: 134 ALWDEVKDRLHKSALG----LSGGQQQRLCIARALAVKPEVLLMDEPT 177

Length = 253

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 72.9 bits (180), Expect = 2e-14
 Identities = 55/238 (23%), Positives = 101/238 (42%), Gaps = 71/238 (29%)

Query: 60  PSNQLIAIMGPSGAGKSSLLDVLSG---YRSNGVTGQILTNGHSRNIN---AFRRVS--- 110
              +++A++G +GAGK++LL  + G    RS    G+I+ +G   +I       R     
Sbjct: 27  ERGEIVALLGRNGAGKTTLLKTIMGLVRPRS----GRIIFDG--EDITGLPPHERARLGI 80

Query: 111 CYIQQDDRLQPLLTI-ENVMSLLGLD-----------------------ESQNTRSSQLS 146
            Y+ +  R+ P LT+ EN+  LLG                         E +N R+  LS
Sbjct: 81  AYVPEGRRIFPRLTVEENL--LLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLS 138

Query: 147 GGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLD 206
           GG+              + M                L+IA  L++ P+++ LDEP+ GL 
Sbjct: 139 GGE--------------QQM----------------LAIARALMSRPKLLLLDEPSEGLA 168

Query: 207 SQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
            +   +  + +K + ++G   I  + Q +    ++ D+ Y+L  G+ +  G   +L+ 
Sbjct: 169 PKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226

Length = 237

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 75.9 bits (187), Expect = 2e-14
 Identities = 64/266 (24%), Positives = 115/266 (43%), Gaps = 70/266 (26%)

Query: 28  EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
            I+F++++++           K VLK++       + +AI+GPSG+GKS+L+ +L     
Sbjct: 328 SIEFENVSFSYPGK-------KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD 380

Query: 88  NGVTGQILTNGHS-RNINAF--RRVSCYIQQDDRL------------QPLLTIENVMSLL 132
              +G+IL +G   R+I+    R+    + QD  L            +P  T E +   L
Sbjct: 381 PT-SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEAL 439

Query: 133 --------------GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPND 178
                         G D     R   LSGGQ++RL+IA  L+ NP ++ LDE T++    
Sbjct: 440 KLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSA---- 495

Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATL 238
                                     LD+++ +     LK +  +GRT +   H+ S   
Sbjct: 496 --------------------------LDTETEALIQDALKKLL-KGRTTLIIAHRLS--T 526

Query: 239 FQMFDQVYLLSGGQCLYQGATDQLVN 264
            +  D++ +L  G+ + +G  ++L+ 
Sbjct: 527 IKNADRIIVLDNGRIVERGTHEELLA 552

Length = 567

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 75.4 bits (186), Expect = 3e-14
 Identities = 52/231 (22%), Positives = 104/231 (45%), Gaps = 34/231 (14%)

Query: 17  SGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKS 76
               +  A    ++F  ++        +       L+ +    P  + +A++GPSGAGKS
Sbjct: 310 GKAPVTAAPAPSLEFSGVSVA------YPGRRP-ALRPVSFTVPPGERVALVGPSGAGKS 362

Query: 77  SLLDVLSGYRSNGVTGQILTNGHS-RNINA--FRRVSCYIQQDDRLQPLL---TI-ENV- 128
           +LL++L G+      G I  NG    + +A  +R    ++ Q     P L   TI EN+ 
Sbjct: 363 TLLNLLLGFVDPT-EGSIAVNGVPLADADADSWRDQIAWVPQ----HPFLFAGTIAENIR 417

Query: 129 MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPND----QKKRLS 184
           ++     +++   + + +G          E +       LD P           Q +RL+
Sbjct: 418 LARPDASDAEIREALERAG--------LDEFVAALPQG-LDTPIGEGGAGLSGGQAQRLA 468

Query: 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS 235
           +A   + +  ++ LDEPT  LD+++ ++ ++ L+ ++ QGRT++   H+ +
Sbjct: 469 LARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALA-QGRTVLLVTHRLA 518

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 72.4 bits (178), Expect = 4e-14
 Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 19/139 (13%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR 108
           + VL  L    P+ Q +A++G SG GKS+LL +L+G  +    G++L    +  +   R 
Sbjct: 25  RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS-AGELLAG--TAPLAEARE 81

Query: 109 VSCYIQQDDRLQPLLT-IENV---------------MSLLGLDESQNTRSSQLSGGQKKR 152
            +  + QD RL P    I+NV               ++ +GL +  N   + LSGGQK+R
Sbjct: 82  DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQR 141

Query: 153 LSIALELINNPRVMFLDEP 171
           +++A  LI+ P ++ LDEP
Sbjct: 142 VALARALIHRPGLLLLDEP 160

Length = 257

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 71.8 bits (176), Expect = 8e-14
 Identities = 75/261 (28%), Positives = 116/261 (44%), Gaps = 35/261 (13%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           +K ++L Y  S G          LK +       ++ AI+G +GAGKS+L   L+G    
Sbjct: 6   LKVEELNYNYSDG-------THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP 58

Query: 89  GVTGQILTNG----HSRN--INAFRRVSCYIQQDDRLQPLLTIENVMSL----LGLDESQ 138
             +G+IL +G    +SR   +     V    Q  D      ++   +S     L L E +
Sbjct: 59  -SSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDE 117

Query: 139 NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFL 198
                      +KR+  AL+      +   D+PT      QKKR++IA  L+  P+V+ L
Sbjct: 118 ----------VRKRVDNALKRTGIEHLK--DKPTHCLSFGQKKRVAIAGVLVMEPKVLVL 165

Query: 199 DEPTTGLDSQSCSQCIKLLK-MISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
           DEPT GLD    S+ +KLL  M  + G TII   H     +    D V+++  G+ + QG
Sbjct: 166 DEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQG 224

Query: 258 ATDQLV---NYLSSVNLPCPK 275
              ++      L  VNL  P+
Sbjct: 225 NPKEVFAEKEMLRKVNLRLPR 245

Length = 283

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 70.8 bits (174), Expect = 8e-14
 Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 28/140 (20%)

Query: 59  FPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG--------HSRNIN------ 104
            PS +L+A++GPSG+GK++LL +++G      +G IL  G          RN+       
Sbjct: 25  IPSGELVALLGPSGSGKTTLLRLIAGLER-PDSGTILFGGEDATDVPVQERNVGFVFQHY 83

Query: 105 -AFRRVSCY--------IQQDDRLQPLLTI-ENVMSLL---GLDESQNTRSSQLSGGQKK 151
             FR ++ +        ++      P   I   V  LL    LD   +   +QLSGGQ++
Sbjct: 84  ALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQ 143

Query: 152 RLSIALELINNPRVMFLDEP 171
           R+++A  L   P+V+ LDEP
Sbjct: 144 RVALARALAVEPKVLLLDEP 163

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 71.7 bits (176), Expect = 8e-14
 Identities = 69/248 (27%), Positives = 111/248 (44%), Gaps = 37/248 (14%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR-- 86
           I+ +DL +    G          LK L    P     A++GP+GAGKS+LL  L+G    
Sbjct: 5   IEVEDLHFRYKDG-------TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP 57

Query: 87  SNG---VTGQILTNGHSRNINAFR-RVSCYIQQ-DDRLQPLLTIENVM---SLLGLDESQ 138
             G   V G+ +   ++ N    R +V    Q  DD++      ++V      +GLD+ +
Sbjct: 58  QRGRVKVMGREV---NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDE 114

Query: 139 NTRSSQLSGGQKKRLSIALELINNPRVM--FLDEPTTSNPNDQKKRLSIALELINNPRVM 196
                      ++R+  AL+ +     M  F D+P       QKKR++IA  L  +P V+
Sbjct: 115 ----------VERRVEEALKAVR----MWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVI 160

Query: 197 FLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ 256
            LDEP   LD +     +++L  +  QG+T+I   H       +  DQV +L  G+ L +
Sbjct: 161 VLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAA-EWADQVIVLKEGRVLAE 219

Query: 257 GATDQLVN 264
           G    L +
Sbjct: 220 GDKSLLTD 227

Length = 274

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 70.5 bits (173), Expect = 1e-13
 Identities = 60/216 (27%), Positives = 96/216 (44%), Gaps = 23/216 (10%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           I+   L+ TV  G    +    +LK +       + +AI+GPSG+GKS+LL VL+G   +
Sbjct: 7   IEVHHLSKTVGQG----EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL-DD 61

Query: 89  GVTGQILTNGHSRN------INAFRRVSC-YIQQDDRLQPLLT-IENVMSLLGLDESQNT 140
             +G++   G   +        A R     ++ Q   L P LT +ENV   L L    + 
Sbjct: 62  PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSA 121

Query: 141 RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDE 200
            S        K L  A+ L    R+     P   +  +Q+ R+++A      P V+F DE
Sbjct: 122 DSRA----GAKALLEAVGL--GKRLTHY--PAQLSGGEQQ-RVALARAFAGRPDVLFADE 172

Query: 201 PTTGLDSQSCSQCIKLL-KMISQQGRTIICTIHQPS 235
           PT  LD  +  +   LL  +  ++G T++   H P 
Sbjct: 173 PTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ 208

Length = 228

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 70.2 bits (172), Expect = 1e-13
 Identities = 60/229 (26%), Positives = 100/229 (43%), Gaps = 34/229 (14%)

Query: 60  PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH--------SRNINAFRRVSC 111
           P  + + ++GPSGAGKSSLL VL+           +   H         + I   RR   
Sbjct: 26  PEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVG 85

Query: 112 YIQQDDRLQPLLT-----IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM 166
            + Q   L P LT     IE    +LGL + Q              L+ A +L+   R+ 
Sbjct: 86  MVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQ-------------ALARAEKLLKRLRLK 132

Query: 167 -FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGR 225
            + D         Q++R++IA  L+  P+V+  DEPT  LD +  +Q + ++K +++ G 
Sbjct: 133 PYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGI 192

Query: 226 TIICTIH-----QPSATLFQMFDQVYLLSGG--QCLYQGATDQLVNYLS 267
           T +   H     + +A+     +  +++  G   C  +  T+   NYLS
Sbjct: 193 TQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQTEAFKNYLS 241

Length = 242

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 73.2 bits (180), Expect = 1e-13
 Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 30/137 (21%)

Query: 65  IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG---HSRNINAFRRVSCYIQQDDRL-- 119
           +AI+GPSG+GKS+LL  L+G     + G++  +G    S + +  RR      QD  L  
Sbjct: 364 VAILGPSGSGKSTLLATLAGLLDP-LQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFD 422

Query: 120 ----------QPLLTIENVMSLL--------------GLDESQNTRSSQLSGGQKKRLSI 155
                     +P  T E + + L              GLD       ++LSGG+++RL++
Sbjct: 423 TTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLAL 482

Query: 156 ALELINNPRVMFLDEPT 172
           A  L+ +  ++ LDEPT
Sbjct: 483 ARALLADAPILLLDEPT 499

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 70.3 bits (172), Expect = 2e-13
 Identities = 60/240 (25%), Positives = 100/240 (41%), Gaps = 48/240 (20%)

Query: 52  LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS---RNINAFRR 108
           L  L G   + +++ ++GP+GAGKS+LL  ++G  S   +G I   G      +     R
Sbjct: 15  LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--SGSIQFAGQPLEAWSATELAR 72

Query: 109 VSCYIQQDDR-------------LQPLLT----IENVMSLLGLDESQNTRSSQLSGGQKK 151
              Y+ Q                 QP  T    + +V   L LD+     ++QLSGG+ +
Sbjct: 73  HRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQ 132

Query: 152 RLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCS 211
           R+ +A         + L     +NP  Q               ++ LDEP   LD    S
Sbjct: 133 RVRLA--------AVVLQITPDANPAGQ---------------LLLLDEPMNSLDVAQQS 169

Query: 212 QCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV--NYLSSV 269
              +LL  + QQG  I+ + H  + TL +   + +LL  G+ L  G  ++++    L+  
Sbjct: 170 ALDRLLSALCQQGLAIVMSSHDLNHTL-RHAHRAWLLKRGKLLASGRREEVLTPPVLAQA 228

Length = 248

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 57/245 (23%), Positives = 118/245 (48%), Gaps = 30/245 (12%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           I  ++++ +  T        K VL ++    P   + +I+GP+GAGKS+LL ++S     
Sbjct: 2   ITIENVSKSYGT--------KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKK 53

Query: 89  GVTGQILTNGH---SRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQL 145
             +G+I  +G    S       +    ++Q++ +   LT+ +++       SQ     +L
Sbjct: 54  D-SGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQ----GRL 108

Query: 146 SGGQKKRLSIALELIN--NPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTT 203
           +   ++ ++ A+E ++  +    +LDE +      Q++R  IA+ L  +   + LDEP  
Sbjct: 109 TKEDRRIINEAIEYLHLEDLSDRYLDELS----GGQRQRAFIAMVLAQDTDYVLLDEPLN 164

Query: 204 GLDSQSCSQCIKLLKMISQQ-GRTIICTIH---QPSATLFQMFDQVYLLSGGQCLYQGAT 259
            LD +   Q +K+L+ ++ + G+TI+  +H     S       D +  L  G+ + QG+ 
Sbjct: 165 NLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYS----DHIVALKNGKVVKQGSP 220

Query: 260 DQLVN 264
           D+++ 
Sbjct: 221 DEIIQ 225

Length = 252

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 59/245 (24%), Positives = 96/245 (39%), Gaps = 60/245 (24%)

Query: 55  LCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR-----RV 109
           L     + +++ ++GP+GAGKS+LL  ++G      +G I   G  + + A+      R 
Sbjct: 15  LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG--SGSIQFAG--QPLEAWSAAELARH 70

Query: 110 SCYIQQDDRLQPLL---------------------TIENVMSLLGLDESQNTRSSQLSGG 148
             Y+ Q       +                      +  V   LGLD+      +QLSGG
Sbjct: 71  RAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGG 130

Query: 149 --QKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLD 206
             Q+ RL+             L      NP  Q               ++ LDEP   LD
Sbjct: 131 EWQRVRLAAV----------VLQVWPDINPAGQ---------------LLLLDEPMNSLD 165

Query: 207 SQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL--VN 264
               +   +LL  + QQG  ++ + H  + TL +  D+V+LL  G+ L  G  D++    
Sbjct: 166 VAQQAALDRLLSELCQQGIAVVMSSHDLNHTL-RHADRVWLLKQGKLLASGRRDEVLTPE 224

Query: 265 YLSSV 269
            L+ V
Sbjct: 225 NLAQV 229

Length = 248

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 68.7 bits (168), Expect = 3e-13
 Identities = 53/201 (26%), Positives = 99/201 (49%), Gaps = 16/201 (7%)

Query: 63  QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG--HSRNINAFRRVSCYIQQDDRLQ 120
           +++AIMGPSGAGKS+LL++++G+     +G I  N   H+      R VS   Q+++   
Sbjct: 25  EIVAIMGPSGAGKSTLLNLIAGFIEP-ASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFA 83

Query: 121 PLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALEL-INNPRVMFLDEPTTSNPNDQ 179
            L   +N+   LGL       + Q    Q+K +  A ++ I +    +LD         Q
Sbjct: 84  HLTVRQNIG--LGLHPGLKLNAEQ----QEKVVDAAQQVGIAD----YLDRLPEQLSGGQ 133

Query: 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL-KMISQQGRTIICTIHQPSATL 238
           ++R+++A  L+    ++ LDEP + LD     + + L+ ++ S++ RT++   H  S   
Sbjct: 134 RQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DA 192

Query: 239 FQMFDQVYLLSGGQCLYQGAT 259
             +  Q+ ++S G+       
Sbjct: 193 RAIASQIAVVSQGKIKVVSDC 213

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 70.8 bits (173), Expect = 4e-13
 Identities = 56/241 (23%), Positives = 111/241 (46%), Gaps = 30/241 (12%)

Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY-RSNGVTGQILTNGHS-RNINAFRR 108
           VL +L     + +L+A++G SG GK++LL  ++G+ ++ G+TG+I        +    +R
Sbjct: 20  VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKR 79

Query: 109 VSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFL 168
               + Q+  L P L +E+ ++  GL  +Q    + ++    +R++ AL+L+       L
Sbjct: 80  GLALLFQNYALFPHLKVEDNVAF-GL-RAQKMPKADIA----ERVADALKLVG------L 127

Query: 169 DEPTTSNPND----QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ- 223
            +     P       ++R++IA  +   P V+ LDEP + LD+   +   + +  + ++ 
Sbjct: 128 GDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEEL 187

Query: 224 -GRTIICTIHQPSATLFQMFDQVYLLSGG--------QCLYQGATDQLV-NYLSSVNLPC 273
              TI+C  H     L  + D+  ++  G        Q LY    D     +L + N+  
Sbjct: 188 PELTILCVTHDQDDAL-TLADKAGIMKDGRLAAHGEPQALYDAPADGFAAEFLGAANILP 246

Query: 274 P 274
            
Sbjct: 247 A 247

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score = 71.1 bits (175), Expect = 6e-13
 Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 33/175 (18%)

Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH---SRNINAFR 107
           +L ++  +    + +AI+GPSG+GKS+LL +L G+ +   +G +  +G      ++ A R
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE-SGSVFYDGQDLAGLDVQAVR 526

Query: 108 RVSCYIQQDDRLQP-----------LLTIENVM---SLLGLDE-------------SQNT 140
           R    + Q+ RL              LT++       + GL E             S+  
Sbjct: 527 RQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEG- 585

Query: 141 RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRV 195
               LSGGQ++RL IA  L+  PR++  DE T++  N  +  +S +LE +   R+
Sbjct: 586 -GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRI 639

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 67.7 bits (166), Expect = 7e-13
 Identities = 46/208 (22%), Positives = 83/208 (39%), Gaps = 58/208 (27%)

Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY-RSNGVTGQILTNGHSRNINAFRRV 109
           +  +L     + + + I GP+GAGK++LL +L+G  R +   G++   G    I   R  
Sbjct: 17  LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDA--GEVYWQGE--PIQNVRES 72

Query: 110 ---SC-YIQQDDRLQPLLT-------------------IENVMSLLGLDESQNTRSSQLS 146
              +  Y+     ++  LT                   I   ++ +GL   ++    QLS
Sbjct: 73  YHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLS 132

Query: 147 GGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLD 206
            GQ++R+++A  L  +P  +++                             LDEP T LD
Sbjct: 133 AGQQRRVALA-RLWLSPAPLWI-----------------------------LDEPFTALD 162

Query: 207 SQSCSQCIKLLKMISQQGRTIICTIHQP 234
            +  +    L+   + QG  ++ T HQP
Sbjct: 163 KEGVALLTALMAAHAAQGGIVLLTTHQP 190

Length = 209

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 69.8 bits (171), Expect = 8e-13
 Identities = 56/258 (21%), Positives = 104/258 (40%), Gaps = 66/258 (25%)

Query: 58  RFPSNQLIAIMGPSGAGKSSLLDVLSGY-RSNGVTGQILTNGHSRN-------INAFRRV 109
             P   + AI G SG+GK++L+ +++G  R +   G+I+ NG +         +   +R 
Sbjct: 19  TLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDE--GEIVLNGRTLFDSRKGIFLPPEKRR 76

Query: 110 SCYIQQDDRLQPLLTI--------------------ENVMSLLGLDESQNTRSSQLSGGQ 149
             Y+ Q+ RL P L++                    E V+ LLG+         +LSGG+
Sbjct: 77  IGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGE 136

Query: 150 KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQS 209
           K+R++I   L+++PR++ +DEP  +                              LD   
Sbjct: 137 KQRVAIGRALLSSPRLLLMDEPLAA------------------------------LDDPR 166

Query: 210 CSQCIKLLKMISQQGRT-IICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSS 268
             + +  L+ +  +    I+   H     L ++ D+V +L  G+    G   ++    +S
Sbjct: 167 KYEILPYLERLHAEFGIPILYVSHSLQEVL-RLADRVVVLEDGRVAAAGPIAEV---WAS 222

Query: 269 VNLPCPKYHNPADFVIEL 286
            +LP          +IE 
Sbjct: 223 PDLPW-LAREDQGSLIEG 239

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 68.1 bits (166), Expect = 1e-12
 Identities = 59/226 (26%), Positives = 109/226 (48%), Gaps = 21/226 (9%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG----YRSN-GVTGQILTNGHS--- 100
           K +LK++  + P+N +  IMGPSG+GKS+LL VL+     Y S   V G++L  G     
Sbjct: 23  KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQ 82

Query: 101 -RNINAFRRVSCYIQQDDRLQPLLTIENVMSLL---GLDESQNTRSSQLSGGQKKRLSIA 156
              I   + V    QQ +    L   +N+   L   G+ E +  +  ++     +++ + 
Sbjct: 83  IDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIK--KIVEECLRKVGLW 140

Query: 157 LELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKL 216
            E+ +      L+ P +     Q++RL+IA  L   P+V+ +DEPT+ +D  +     KL
Sbjct: 141 KEVYDR-----LNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKL 195

Query: 217 LKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
           +  +  +   I+   H P     ++ D V  L  G+ +  G+++++
Sbjct: 196 ITELKNE-IAIVIVSHNPQQVA-RVADYVAFLYNGELVEWGSSNEI 239

Length = 257

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 70.5 bits (173), Expect = 1e-12
 Identities = 70/272 (25%), Positives = 128/272 (47%), Gaps = 37/272 (13%)

Query: 4   VEFELSNSLSSSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQ 63
           V+ E  N    +E           +I   D++Y  S G G      ++L ++      N 
Sbjct: 454 VDSEFINKKKRTELNNLNG-----DIVINDVSY--SYGYG-----SNILSDISLTIKMNS 501

Query: 64  LIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NINAFRRVSCYIQQDDRLQ 120
              I+G SG+GKS+L  +L G+     +G+IL NG S    + +  R+   Y+ Q+    
Sbjct: 502 KTTIVGMSGSGKSTLAKLLVGFFQAR-SGEILLNGFSLKDIDRHTLRQFINYLPQE---- 556

Query: 121 PLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALEL---INNPRVMF---LDEPTTS 174
           P +   +++  L L   +N    ++         IA E+   I N  + +   L E  +S
Sbjct: 557 PYIFSGSILENLLLGAKENVSQDEI----WAACEIA-EIKDDIENMPLGYQTELSEEGSS 611

Query: 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCI-KLLKMISQQGRTIICTIHQ 233
               QK+R+++A  L+ + +V+ LDE T+ LD+ +  + +  LL +   Q +TII   H+
Sbjct: 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHR 668

Query: 234 PSATLFQMFDQVYLLSGGQCLYQGATDQLVNY 265
            S    +  D++ +L  G+ + QG+ D+L++ 
Sbjct: 669 LSVA--KQSDKIIVLDHGKIIEQGSHDELLDR 698

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 68.7 bits (168), Expect = 1e-12
 Identities = 65/242 (26%), Positives = 105/242 (43%), Gaps = 60/242 (24%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH---SRNINA 105
           K V+  L     S +   ++GP+GAGKS++  ++ G  S    G+I   G    +R   A
Sbjct: 54  KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD-AGKITVLGVPVPARARLA 112

Query: 106 FRRVSCYIQQDDRLQPLLT------------------IENVM-SLLG---LDESQNTRSS 143
             R+   + Q D L    T                  IE V+ SLL    L+   + R S
Sbjct: 113 RARIGV-VPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVS 171

Query: 144 QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTT 203
            LSGG K+RL++A  LIN+P+++ L                              DEPTT
Sbjct: 172 DLSGGMKRRLTLARALINDPQLLIL------------------------------DEPTT 201

Query: 204 GLDSQSCSQCIKLLKMISQQGRTIICTIH-QPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
           GLD  +     + L+ +  +G+TI+ T H    A   ++ D++ +L  G+ + +G    L
Sbjct: 202 GLDPHARHLIWERLRSLLARGKTILLTTHFMEEAE--RLCDRLCVLEAGRKIAEGRPHAL 259

Query: 263 VN 264
           ++
Sbjct: 260 ID 261

Length = 340

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 68.4 bits (168), Expect = 2e-12
 Identities = 54/243 (22%), Positives = 105/243 (43%), Gaps = 74/243 (30%)

Query: 62  NQLIAIMGPSGAGKS----SLLDVLSGYRSNGVTGQILTNG------HSRNINAFR--RV 109
            +++ I+G SG+GKS    +++ +L    +  V G+IL +G        + +   R   +
Sbjct: 31  GEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEI 90

Query: 110 SCYIQQD--DRLQPLLTIEN------------------------VMSLLGLDESQNTRSS 143
           +  I QD    L P++TI +                        ++ L+G+ + +    S
Sbjct: 91  A-MIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKS 149

Query: 144 ---QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDE 200
              +LSGG ++R+ IA+ L  NP+++                  IA            DE
Sbjct: 150 YPHELSGGMRQRVMIAMALALNPKLL------------------IA------------DE 179

Query: 201 PTTGLDSQSCSQCIKLLK-MISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259
           PTT LD    +Q + LLK +  ++G  +I   H     + ++ D+V ++  G+ + +G  
Sbjct: 180 PTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMYAGRIVEEGPV 238

Query: 260 DQL 262
           +++
Sbjct: 239 EEI 241

Length = 316

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 70.0 bits (172), Expect = 2e-12
 Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 32/161 (19%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           ++F++++             + +LK+L  R      IAI+GP+GAGKS+LL +L+G    
Sbjct: 322 LEFENVSKGYD-------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG-ELG 373

Query: 89  GVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLD------------- 135
            ++G +   G +  I  F       Q  D L P  T+   +S    D             
Sbjct: 374 PLSGTV-KVGETVKIGYFD------QHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426

Query: 136 ----ESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
               E Q      LSGG+K RL +A  L+  P ++ LDEPT
Sbjct: 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPT 467

Length = 530

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 66.9 bits (163), Expect = 2e-12
 Identities = 62/227 (27%), Positives = 105/227 (46%), Gaps = 21/227 (9%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQILTNGHS- 100
           K  +KN+  +   NQ+ AI+GPSG GK++LL       D + G+R   V G+I   G   
Sbjct: 16  KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR---VEGKIYFKGQDI 72

Query: 101 ----RNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIA 156
                ++  +R+    + Q     P+   +NV    G          +L    ++ L  A
Sbjct: 73  YDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVA--FGPRIHGVKSKHKLDRIVEESLKKA 130

Query: 157 LELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKL 216
             L +  +   L++P T     Q++RL IA  L   P V+ LDEPT+ LD  +  +  KL
Sbjct: 131 -ALWDEVKSE-LNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKL 188

Query: 217 LKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263
           L+ +S+   TI+   H     + ++ D +  +  G+ +  G T ++V
Sbjct: 189 LEELSEN-YTIVIVTHNIGQAI-RIADYIAFMYRGELIEYGPTREIV 233

Length = 250

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 66.5 bits (163), Expect = 3e-12
 Identities = 49/167 (29%), Positives = 72/167 (43%), Gaps = 49/167 (29%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQILTNGHS- 100
           K+ LKN+    P NQ+ A++GPSG GKS+LL       D++ G R   + G++L +G   
Sbjct: 14  KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR---IEGKVLFDGQDI 70

Query: 101 ----RNINAFRRVSCYIQQDDRLQPLLTIENVM--------------------SLLG--- 133
                ++   RR    + Q     P+   +N+                     SL     
Sbjct: 71  YDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAAL 130

Query: 134 -------LDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT 173
                  L +S       LSGGQ++RL IA  L   P V+ LDEPT+
Sbjct: 131 WDEVKDRLHDSALG----LSGGQQQRLCIARALAVEPEVLLLDEPTS 173

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 66.8 bits (164), Expect = 3e-12
 Identities = 53/219 (24%), Positives = 100/219 (45%), Gaps = 27/219 (12%)

Query: 63  QLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHS-RNINAFRRVSCYIQ---QDD 117
           +++ ++GP+GAGK++L ++++G Y+ +   G ++  G     +   R     I    Q  
Sbjct: 31  EIVGLIGPNGAGKTTLFNLITGFYKPSS--GTVIFRGRDITGLPPHRIARLGIARTFQIT 88

Query: 118 RLQPLLT-IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFL-------- 168
           RL P LT +ENV   +G                +K    A E     R   L        
Sbjct: 89  RLFPGLTVLENVA--VGAHARLGLSGLLGRPRARKEEREARE-----RARELLEFVGLGE 141

Query: 169 --DEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GR 225
             D P  +    Q++RL IA  L   P+++ LDEP  GL+ +   +  +L++ +  + G 
Sbjct: 142 LADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGV 201

Query: 226 TIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
           TI+   H     +  + D++ +L+ G+ + +G  +++ N
Sbjct: 202 TILLIEHDMKL-VMGLADRIVVLNYGEVIAEGTPEEVRN 239

Length = 250

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 55/228 (24%), Positives = 93/228 (40%), Gaps = 17/228 (7%)

Query: 40  TGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH 99
             +  ++  K +L +L  +    +  AI+GP+GAGK++LL +L+G      +G +   G 
Sbjct: 35  KNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS-SGDVTLLGR 93

Query: 100 SR---NINAFRR-----VSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKK 151
                      R     VS  + +  R +   T+ +V+ L G   S       L+     
Sbjct: 94  RFGKGETIFELRKRIGLVSSELHE--RFRVRETVRDVV-LSGFFASIGIYQEDLTAEDLA 150

Query: 152 RLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCS 211
                LEL+    +   D P  S    +++R+ IA  L+ +P ++ LDEP  GLD  +  
Sbjct: 151 AAQWLLELLGAKHL--ADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIARE 208

Query: 212 QCIKLL--KMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
           Q +  L     S     ++   H         F    LL  G+ + QG
Sbjct: 209 QLLNRLEELAASPGAPALLFVTHHAEEIP-PCFTHRLLLKEGEVVAQG 255

Length = 257

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 66.0 bits (161), Expect = 4e-12
 Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 41/178 (23%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRS 87
           +KF+++T+   T     +    VL+++       ++ A++GPSG+GKS+++ +L   Y+ 
Sbjct: 12  VKFQNVTFAYPT-----RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP 66

Query: 88  NGVTGQILTNGHSRNINAF-----RRVSCYIQQDDRL------------QPLLTIENVMS 130
            G  GQ+L +G    I+ +           + Q+  L                + E V  
Sbjct: 67  QG--GQVLLDGKP--ISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKE 122

Query: 131 L--------------LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
                           G D     + SQLSGGQK+R++IA  LI NP+V+ LDE T++
Sbjct: 123 AAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSA 180

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 67.4 bits (165), Expect = 4e-12
 Identities = 49/246 (19%), Positives = 95/246 (38%), Gaps = 58/246 (23%)

Query: 44  FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS--R 101
            K+   + ++++    P  +++  +G +GAGKS+ L +L+G      +G++  NG    R
Sbjct: 32  RKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTG-LLLPTSGKVRVNGKDPFR 90

Query: 102 NINAFRRVSCY-------------IQQDDRLQPLL----------TIENVMSLLGLDESQ 138
               + R                       +  L+           ++ +  +L L+   
Sbjct: 91  RREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFL 150

Query: 139 NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVM-F 197
                +LS GQ+ R  +A  L++ P+V+FLDEPT            + L++     +  F
Sbjct: 151 KWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPT------------VGLDVNAQANIREF 198

Query: 198 LDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
           L E                     ++  T++ T H     +  + D+V L+  GQ ++ G
Sbjct: 199 LKEYN------------------EERQATVLLTTHI-FDDIATLCDRVLLIDQGQLVFDG 239

Query: 258 ATDQLV 263
              QL 
Sbjct: 240 TLAQLQ 245

Length = 325

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 43/147 (29%), Positives = 76/147 (51%), Gaps = 26/147 (17%)

Query: 66  AIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINAFRRVSCYIQQDDRLQPLLT 124
            I+GP+G+GKS LL+ ++G+     +G+IL NG    N+   +R   Y+ Q+  L P +T
Sbjct: 29  VILGPTGSGKSVLLETIAGFIKP-DSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMT 87

Query: 125 IE----------------------NVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINN 162
           +                        +  +LG+D   N +   LSGG+++R++IA  L+ N
Sbjct: 88  VYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVN 147

Query: 163 PRVMFLDEPTTSNPNDQKKRLSIALEL 189
           P+++ LDEP ++   D + +  +  EL
Sbjct: 148 PKILLLDEPFSA--LDVRTKEKLREEL 172

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 66.2 bits (162), Expect = 4e-12
 Identities = 57/263 (21%), Positives = 113/263 (42%), Gaps = 61/263 (23%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           I+ ++L+Y++          + +L  +       +++AI+GP+GAGKS+LL  LSG  S 
Sbjct: 2   IRAENLSYSL--------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP 53

Query: 89  GVTGQILTNGHSRNI---NAFRRVSCYIQQDDRLQPLLTIENVMSL------LGLDESQN 139
             +G++  NG   N        R    + Q+  L    T++ V+ +       G +  ++
Sbjct: 54  D-SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEED 112

Query: 140 TRSS------------------QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKK 181
            R +                   LSGG+++R+ +A       RV                
Sbjct: 113 ERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLA-------RV---------------- 149

Query: 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQM 241
            L+     + + R +FLDEPT+ LD       ++L + ++++G  ++  +H  +    Q 
Sbjct: 150 -LAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAA-QY 207

Query: 242 FDQVYLLSGGQCLYQGATDQLVN 264
            D++ LL  G+ +  G+   ++ 
Sbjct: 208 ADRIVLLHQGRVIASGSPQDVLT 230

Length = 259

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 65.9 bits (160), Expect = 6e-12
 Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 21/203 (10%)

Query: 41  GLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQ 93
           G+ F      VLKN+   FP  Q+ AI+GPSG GKS+LL       D++SG R  G    
Sbjct: 9   GVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLL 68

Query: 94  ILTNGHSRN---INAFRRVSCYIQQDDRLQPLLTIENVM---SLLGLDESQNTRSSQLSG 147
              N +S N   +N  +RV    QQ +   P    +NV     +LG   +  +R  ++  
Sbjct: 69  DNENIYSPNLDVVNLRKRVGMVFQQPNPF-PKSIFDNVAFGPRMLGT--TAQSRLDEVVE 125

Query: 148 GQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDS 207
              ++ ++  E+ +N     L +   +    Q++RL IA  L   P V+ +DEP + LD 
Sbjct: 126 KSLRQAALWDEVKDN-----LHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDP 180

Query: 208 QSCSQCIKLLKMISQQGRTIICT 230
            S  +  +L++ + Q     I T
Sbjct: 181 VSTMRIEELMQELKQNYTIAIVT 203

Length = 251

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 65.0 bits (159), Expect = 7e-12
 Identities = 41/131 (31%), Positives = 70/131 (53%), Gaps = 26/131 (19%)

Query: 65  IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG--HSRNINAFRRVSCYIQQDDRLQPL 122
           +AI+GPSGAGKS+LL++++G+ +   +G +  NG  H+    + R VS   Q+++ L   
Sbjct: 28  VAILGPSGAGKSTLLNLIAGFLT-PASGSLTLNGQDHTTTPPSRRPVSMLFQENN-LFSH 85

Query: 123 LTIENVMSL-----LGLDESQNTR-----------------SSQLSGGQKKRLSIALELI 160
           LT+   + L     L L+ +Q  +                   QLSGGQ++R+++A  L+
Sbjct: 86  LTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLV 145

Query: 161 NNPRVMFLDEP 171
               ++ LDEP
Sbjct: 146 REQPILLLDEP 156

Length = 232

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 64.1 bits (156), Expect = 1e-11
 Identities = 44/212 (20%), Positives = 91/212 (42%), Gaps = 49/212 (23%)

Query: 41  GLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH- 99
            L  +++ + +   L     + + + + GP+G+GK++LL +L+G  S  + G++L NG  
Sbjct: 5   ELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGL-SPPLAGRVLLNGGP 63

Query: 100 -SRNINAFRRVSCYIQQDDRLQPLLT----------------IENVMSLLGLDESQNTRS 142
                ++  R   Y+     ++  L+                +E  ++ +GL+  ++   
Sbjct: 64  LDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPV 123

Query: 143 SQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPT 202
           +QLS GQ++R+++A                         RL     L++   +  LDEPT
Sbjct: 124 AQLSAGQQRRVALA-------------------------RL-----LLSGRPLWILDEPT 153

Query: 203 TGLDSQSCSQCIKLLKMISQQGRTIICTIHQP 234
           T LD    ++  + +     +G  ++ T HQ 
Sbjct: 154 TALDKAGVARFAEAMAGHCARGGMVVLTTHQD 185

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 64.5 bits (158), Expect = 1e-11
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 29/148 (19%)

Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNIN---AFR 107
           +L+ +    P  ++  ++G +G GK++LL  L G      +G I  +G   +I       
Sbjct: 15  ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMG-LLPVKSGSIRLDG--EDITKLPPHE 71

Query: 108 RVS---CYIQQDDRLQPLLTI-EN---VMSLLG----------------LDESQNTRSSQ 144
           R      Y+ Q   + P LT+ EN    ++ L                 L E    R   
Sbjct: 72  RARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGD 131

Query: 145 LSGGQKKRLSIALELINNPRVMFLDEPT 172
           LSGGQ+++L+IA  L+  P+++ LDEPT
Sbjct: 132 LSGGQQQQLAIARALVTRPKLLLLDEPT 159

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 55/235 (23%), Positives = 95/235 (40%), Gaps = 63/235 (26%)

Query: 62  NQLIAIMGPSGAGKS----SLLDVLSGYRSNGVTGQILTNGHSRNINAFR-RVSCYIQQD 116
            +++A++G SG+GKS    ++L +L        +G+IL +G      + R R    I Q+
Sbjct: 12  GEVLALVGESGSGKSLTCLAILGLL-PPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQN 70

Query: 117 DR--LQPLLTI-----ENVMSLL-----------------GLDESQNTRSS---QLSGGQ 149
            R    PL T+     E + SL                  GL + +        QLSGG 
Sbjct: 71  PRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGM 130

Query: 150 KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQS 209
            +R+ IAL L+  P  +  DEPTT             L+++N  RV+ L           
Sbjct: 131 LQRVMIALALLLEPPFLIADEPTT------------DLDVVNQARVLKL----------- 167

Query: 210 CSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
                 L ++    G  I+   H     + ++ D+V ++  G+ + +G   ++  
Sbjct: 168 ------LRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIFY 215

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 64.1 bits (156), Expect = 1e-11
 Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 24/133 (18%)

Query: 63  QLIAIMGPSGAGKSSLLDVLSGYRSNG--VTGQILTNGHSRN-INAFRRVSCYIQQDDRL 119
           +++ +MGPSG GKS+LL  + G  +     TG++  N    + + A +R    + QD  L
Sbjct: 29  EIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALL 88

Query: 120 QPLLTI-ENVMSLL--------------------GLDESQNTRSSQLSGGQKKRLSIALE 158
            P L++ +N++  L                    GLD + +   + LSGGQ+ R+++   
Sbjct: 89  FPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRA 148

Query: 159 LINNPRVMFLDEP 171
           L+  P+ + LDEP
Sbjct: 149 LLAQPKALLLDEP 161

Length = 213

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 65.6 bits (160), Expect = 1e-11
 Identities = 58/191 (30%), Positives = 89/191 (46%), Gaps = 21/191 (10%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH---SRNINA 105
           K V+  L       +   ++GP+GAGK++ L +L G  ++   G I   G    SR  +A
Sbjct: 20  KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL-THPDAGSISLCGEPVPSRARHA 78

Query: 106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALE---LIN 161
            +RV   + Q D L P  T+   + + G       R   LS    +  +   LE   L N
Sbjct: 79  RQRVGV-VPQFDNLDPDFTVRENLLVFG-------RYFGLSAAAARALVPPLLEFAKLEN 130

Query: 162 NPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMIS 221
                  D          K+RL++A  L+N+P V+ LDEPTTGLD Q+     + L+ + 
Sbjct: 131 KA-----DAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLL 185

Query: 222 QQGRTIICTIH 232
            +G+TI+ T H
Sbjct: 186 ARGKTILLTTH 196

Length = 306

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 47/224 (20%), Positives = 95/224 (42%), Gaps = 56/224 (25%)

Query: 63  QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS--RNINAFRR--------VSCY 112
           ++  ++G +GAGK++LL +++       +G++  +G    R+ +  RR           Y
Sbjct: 29  EITGLLGENGAGKTTLLRMIATLLIPD-SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLY 87

Query: 113 --------IQQDDRLQPLL------TIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALE 158
                   ++   RL  L        I  +   L L E  + R  + S G K++++IA  
Sbjct: 88  ARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARA 147

Query: 159 LINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK 218
           L+++P ++ LDEP                              T+GLD ++  +    +K
Sbjct: 148 LVHDPSILVLDEP------------------------------TSGLDIRTRRKFHDFIK 177

Query: 219 MISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
            +  +GR +I + H     +  + D+V +L  G+ + +G+ + L
Sbjct: 178 QLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHKGEVVLEGSIEAL 220

Length = 245

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 42/174 (24%), Positives = 82/174 (47%), Gaps = 44/174 (25%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           I+F++++             K  + ++       + + ++GPSG+GK++ L ++     N
Sbjct: 2   IEFENVSKRYG--------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMI-----N 48

Query: 89  GV----TGQILTNGHS-RNINAF--RRVSCYIQQDDRLQPLLTI-ENV------------ 128
            +    +G+IL +G    +++    RR   Y+ Q   L P LT+ EN+            
Sbjct: 49  RLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKE 108

Query: 129 ---------MSLLGLDESQ--NTRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
                    + L+GLD S+  +    +LSGGQ++R+ +A  L  +P ++ +DEP
Sbjct: 109 RIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEP 162

Length = 309

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 65.7 bits (161), Expect = 2e-11
 Identities = 46/171 (26%), Positives = 86/171 (50%), Gaps = 40/171 (23%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH--------S 100
           K+V+ NL     + + + ++GPSG GK+++L +++G+     +G+I+ +G         +
Sbjct: 27  KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE-TPDSGRIMLDGQDITHVPAEN 85

Query: 101 RNINAFRRVSCYIQQDDRLQPLLTI-ENV---------------------MSLLGLDESQ 138
           R++N        + Q   L P +T+ ENV                     + ++ L+E  
Sbjct: 86  RHVNT-------VFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFA 138

Query: 139 NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL 189
             +  QLSGGQ++R++IA  ++N P+V+ LDE  ++   D K R  +  EL
Sbjct: 139 QRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSA--LDYKLRKQMQNEL 187

Length = 375

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 56/177 (31%), Positives = 83/177 (46%), Gaps = 43/177 (24%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL---DVLSGY 85
           I+FK+    VS   G    P  VL N+       +++ I+GPSG+GKS+LL   + L   
Sbjct: 2   IEFKN----VSKHFG----PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI 53

Query: 86  RSNGVTGQILTNGHSRN-----INAFRRVSCYIQQDDRLQPLLT-IENVM---------- 129
            S    G ++ +G   N         R+ +  + Q   L P LT +ENVM          
Sbjct: 54  TS----GDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGAS 109

Query: 130 ---------SLL---GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
                     LL   GL E  +   S+LSGGQ++R++IA  L   P++M  DEPT++
Sbjct: 110 KEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSA 166

Length = 240

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 66/237 (27%), Positives = 103/237 (43%), Gaps = 50/237 (21%)

Query: 60  PSNQLIAIMGPSGAGKSSLLDVLS---GYRSNGVTGQILTNGHSRN---------INAFR 107
           P  + + ++GPSGAGKSSLL VL+     RS    G +   G+  +         I   R
Sbjct: 26  PQGETLVLLGPSGAGKSSLLRVLNLLEMPRS----GTLNIAGNHFDFSKTPSDKAIRELR 81

Query: 108 R-VSCYIQQDDRLQPLLT-----IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELIN 161
           R V    QQ + L P LT     IE    +LGL + Q             R   A +L+ 
Sbjct: 82  RNVGMVFQQYN-LWPHLTVQQNLIEAPCRVLGLSKDQ----------ALAR---AEKLLE 127

Query: 162 NPRVMFLDEPTTSNP----NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL 217
             R   L       P      Q++R++IA  L+  P+V+  DEPT  LD +  +Q + ++
Sbjct: 128 RLR---LKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSII 184

Query: 218 KMISQQGRTIICTIHQPS-----ATLFQMFDQVYLLSGG--QCLYQGATDQLVNYLS 267
           + +++ G T +   H+       A+     +  +++  G   C  Q  T+   NYLS
Sbjct: 185 RELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQPQTEAFKNYLS 241

Length = 242

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 49/177 (27%), Positives = 73/177 (41%), Gaps = 45/177 (25%)

Query: 30  KFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG 89
           + KDL   V          K++LK +       ++ AIMGP+G+GKS+L   + G+    
Sbjct: 5   EIKDLHVEVE-------GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYE 57

Query: 90  VT-GQILTNGHS---------------------------RNINAFRRVSCYIQQDDRLQP 121
           VT G+IL +G                              N + F R +   ++  R   
Sbjct: 58  VTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSD-FLRAAMNARRGAR--G 114

Query: 122 LLT-----IENVMSLLGLDESQNTRS--SQLSGGQKKRLSIALELINNPRVMFLDEP 171
           +L      ++    LLGLDE    R      SGG+KKR  I   L+  P++  LDEP
Sbjct: 115 ILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEP 171

Length = 251

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score = 63.6 bits (155), Expect = 3e-11
 Identities = 69/254 (27%), Positives = 104/254 (40%), Gaps = 57/254 (22%)

Query: 39  STGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVT 91
           + GL F       L ++   F  NQ+ A++GPSG GKS+ L       D++ G R   V 
Sbjct: 9   ARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR---VE 65

Query: 92  GQILTNG---HSRNINAF---RRVSCYIQQDDRLQPLLTIENVM-----------SLLGL 134
           G+IL +G   +  +++     RRV    Q+ +   P    ENV            + L  
Sbjct: 66  GEILLDGENIYDPHVDVVELRRRVGMVFQKPNPF-PKSIFENVAYGLRVNGVKDKAYLAE 124

Query: 135 DESQNTRSSQLSGGQKKRLS-IALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNP 193
              ++ R + L    K RL   AL L                   Q++RL IA  L   P
Sbjct: 125 RVERSLRHAALWDEVKDRLHESALGL----------------SGGQQQRLCIARALAVEP 168

Query: 194 RVMFLDEPTTGLD---SQSCSQCIKLLKMISQQGRTIICTIH--QPSATLFQMFDQVYLL 248
            V+ +DEP + LD   +Q   + I  LK       TII   H  Q +A   ++ D     
Sbjct: 169 EVLLMDEPASALDPIATQKIEELIHELK----ARYTIIIVTHNMQQAA---RVSDVTAFF 221

Query: 249 SGGQCLYQGATDQL 262
             G+ +  G T+Q+
Sbjct: 222 YMGKLIEVGPTEQI 235

Length = 253

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 63.9 bits (155), Expect = 3e-11
 Identities = 62/229 (27%), Positives = 100/229 (43%), Gaps = 26/229 (11%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQILTNGHS- 100
           K  +KN+        + A++GPSG GK++ L       D+  G R   VTG+IL +G   
Sbjct: 17  KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGAR---VTGRILLDGQDI 73

Query: 101 -----RNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSI 155
                  +   RRV    Q+ +    +   +NV++ L L   ++ R   +   ++     
Sbjct: 74  YGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRD-RDHLMEVAERSLRGA 132

Query: 156 ALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIK 215
           AL      R   L  P T     Q++RL IA  L   P ++ +DEPT+ LD  S ++   
Sbjct: 133 ALWDEVKDR---LKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIED 189

Query: 216 LLKMISQQGRTIICT--IHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
           L+  + +    II T  +HQ +    ++ D       G  +  G TDQL
Sbjct: 190 LMTDLKKVTTIIIVTHNMHQAA----RVSDTTSFFLVGDLVEHGPTDQL 234

Length = 252

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 65.8 bits (161), Expect = 3e-11
 Identities = 61/273 (22%), Positives = 105/273 (38%), Gaps = 73/273 (26%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKS----SLLDVLSG 84
           +  ++L+              + +K +     + + +A++G SG+GKS    S+L +L  
Sbjct: 7   LSIRNLSVAFHQE----GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPS 62

Query: 85  YRSNGVTGQILTNGHS------RNINAFR--RVSCYIQQD-DRLQPLLTIEN-------- 127
             +   +G IL +G        R +   R  ++    Q+    L PL TI          
Sbjct: 63  PAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRL 122

Query: 128 ------------VMSLL---GLDESQNTRSS---QLSGGQKKRLSIALELINNPRVMFLD 169
                        + LL   G+ E +    +   +LSGGQ++R            VM   
Sbjct: 123 HRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQR------------VM--- 167

Query: 170 EPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIIC 229
                          IA+ L N P ++  DEPTT LD    +Q + LLK +  +    I 
Sbjct: 168 ---------------IAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAIL 212

Query: 230 TIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
            I      + +  D+VY++  G+ +  G T+ L
Sbjct: 213 FITHDLGIVRKFADRVYVMQHGEIVETGTTETL 245

Length = 534

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 63.6 bits (155), Expect = 3e-11
 Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 27/146 (18%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINAFR 107
           K  L+++     S +L+ ++GPSG GK++LL++++G+      G I  +G       A R
Sbjct: 14  KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ-HGSITLDGKPVEGPGAER 72

Query: 108 RVSCYIQQDDRLQPLLTI-ENV---------------------MSLLGLDESQNTRSSQL 145
            V   + Q++ L P   + +NV                     +  +GL+ ++     QL
Sbjct: 73  GV---VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQL 129

Query: 146 SGGQKKRLSIALELINNPRVMFLDEP 171
           SGGQ++R+ IA  L  NP+++ LDEP
Sbjct: 130 SGGQRQRVGIARALAANPQLLLLDEP 155

Length = 255

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 59/224 (26%), Positives = 100/224 (44%), Gaps = 24/224 (10%)

Query: 44  FKQEPKDV--LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG--- 98
           FK++ ++V  LK +       +++  +GP+GAGK++ L +LSG      +G++   G   
Sbjct: 27  FKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP-TSGEVRVAGLVP 85

Query: 99  HSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLL----GLDESQNTRSSQLSGGQKKRLS 154
             R     RR+     Q  +L   L + +   LL     L  ++  +       +   LS
Sbjct: 86  WKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKK-------RLDELS 138

Query: 155 IALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCI 214
             L+L        LD P       Q+ R  IA  L++ P ++FLDEPT GLD  +     
Sbjct: 139 ELLDLEE-----LLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIR 193

Query: 215 KLLK-MISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
             LK    ++G T++ T H     +  +  +V ++  G+ LY G
Sbjct: 194 NFLKEYNRERGTTVLLTSHY-MKDIEALARRVLVIDKGRLLYDG 236

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 60.5 bits (148), Expect = 5e-11
 Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 46/144 (31%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           I+ ++L+ T           K +LK++         I ++G +GAGKS+LL +++G    
Sbjct: 1   IELENLSKTY--------GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG-ELE 51

Query: 89  GVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG 148
              G +   G +  I        Y                               QLSGG
Sbjct: 52  PDEGIVTW-GSTVKI-------GYF-----------------------------EQLSGG 74

Query: 149 QKKRLSIALELINNPRVMFLDEPT 172
           +K RL++A  L+ NP ++ LDEPT
Sbjct: 75  EKMRLALAKLLLENPNLLLLDEPT 98

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 62.4 bits (152), Expect = 5e-11
 Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 28/205 (13%)

Query: 63  QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG---HSRNINAFRRVSCYIQQDDRL 119
           ++  ++GP+GAGK++ L +L+G       G    +G         A RR+  ++     L
Sbjct: 32  EVTGLLGPNGAGKTTTLRMLAGLLEPD-AGFATVDGFDVVKEPAEARRRLG-FVSDSTGL 89

Query: 120 QPLLTI-ENVM---SLLGLD-ESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
              LT  EN+     L GL  +    R  +L+     RL +            LD     
Sbjct: 90  YDRLTARENLEYFAGLYGLKGDELTARLEELA----DRLGME---------ELLDRRVGG 136

Query: 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIH-- 232
                +++++IA  L+++P V+ LDEPTTGLD  +     + ++ +   G+ I+ + H  
Sbjct: 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIM 196

Query: 233 QPSATLFQMFDQVYLLSGGQCLYQG 257
           Q    L    D+V +L  G+ +Y+G
Sbjct: 197 QEVERL---CDRVVVLHRGRVVYEG 218

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 63.3 bits (154), Expect = 6e-11
 Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 65/230 (28%)

Query: 63  QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS--RNINAFRRVSCYIQQDDRL- 119
           +++  +GP+GAGKS+ + +++GY     +G +   G    +N    +R   Y+ + + L 
Sbjct: 29  RIVGFLGPNGAGKSTTMKIITGYLPPD-SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLY 87

Query: 120 -----QPLLT----------------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALE 158
                +  L                 +E ++ L+GL   Q+ +  QLS G ++R+ +A  
Sbjct: 88  LDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQA 147

Query: 159 LINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK 218
           LI++P+V+ LDEP                              TTGLD     +   ++K
Sbjct: 148 LIHDPKVLILDEP------------------------------TTGLDPNQLVEIRNVIK 177

Query: 219 MISQQGRTIICTIHQPSATLFQ----MFDQVYLLSGGQCLYQGATDQLVN 264
            I +  +TII + H     + Q    + D+V +++ G+ +     D+L  
Sbjct: 178 NIGKD-KTIILSTH-----IMQEVEAICDRVIIINKGKIVADKKLDELSA 221

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 62.3 bits (152), Expect = 7e-11
 Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 40/163 (24%)

Query: 47  EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT-GQILTNGHSRNINA 105
           E K++LK +       ++ AIMGP+G+GKS+L   ++G+ S  VT G IL  G   ++  
Sbjct: 11  EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQ--DLLE 68

Query: 106 ----------------------------FRRVSCYIQQDDRLQPLLT-------IENVMS 130
                                       F R +   ++  R +  L        ++  ++
Sbjct: 69  LEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLA 128

Query: 131 LLGLDESQNTRSSQ--LSGGQKKRLSIALELINNPRVMFLDEP 171
           LLG+DE    RS     SGG+KKR  I    +  P++  LDE 
Sbjct: 129 LLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEI 171

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 62.2 bits (152), Expect = 7e-11
 Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 41/170 (24%)

Query: 37  TVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILT 96
           +VS   GFK      L +L       +L  I+GP+GAGK++++DV++G ++    G +L 
Sbjct: 9   SVSFD-GFK-----ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITG-KTRPDEGSVLF 61

Query: 97  NGHS------------------------RNINAFRRVSCYIQQDDRLQPLLT-------- 124
            G                           N+  F  +   + +D  +   L         
Sbjct: 62  GGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEK 121

Query: 125 --IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
             IE V+  +GL +  +  +  LS GQK+ L I + L+ +P+++ LDEP 
Sbjct: 122 DRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPV 171

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 63.4 bits (154), Expect = 8e-11
 Identities = 61/240 (25%), Positives = 108/240 (45%), Gaps = 61/240 (25%)

Query: 52  LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG-------HSRNIN 104
           L N+    P+ Q+  ++G SGAGKS+L+  ++       +G ++ +G       +S    
Sbjct: 21  LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN-LLERPTSGSVIVDGQDLTTLSNSELTK 79

Query: 105 AFRRVSCYIQQDDRLQPLLTIENV---------------------MSLLGLDESQNTRSS 143
           A R++    Q  + L       NV                     ++L+GL +  ++  S
Sbjct: 80  ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPS 139

Query: 144 QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTT 203
            LSGGQK+R++IA  L +NP+V+  DE T++                       LD  TT
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSA-----------------------LDPATT 176

Query: 204 GLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
               QS    ++LLK I+++ G TI+   H+    + ++ D V ++S G+ + QG   ++
Sbjct: 177 ----QS---ILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQGTVSEI 228

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 62.4 bits (152), Expect = 8e-11
 Identities = 58/254 (22%), Positives = 102/254 (40%), Gaps = 75/254 (29%)

Query: 50  DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH---------- 99
           +VLK +  +  +  +I+I+G SG+GKS+ L  ++ +      G I  NG           
Sbjct: 20  EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN-FLEKPSAGSIRVNGEEIRLKRDKDG 78

Query: 100 ------SRNINAFRRVSCYIQQDDRLQPLLTI-ENVMS-------------------LL- 132
                  R +   R     + Q   L   +T+ ENV+                     L 
Sbjct: 79  QLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLA 138

Query: 133 --GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELI 190
             G+ E  +   + LSGGQ++R++IA  L                          A+E  
Sbjct: 139 KVGIAEKADAYPAHLSGGQQQRVAIARAL--------------------------AME-- 170

Query: 191 NNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLF--QMFDQVYLL 248
             P VM  DEPT+ LD +   + +K+++ ++++GRT++   H+     F   +   V  L
Sbjct: 171 --PEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG---FARDVSSHVIFL 225

Query: 249 SGGQCLYQGATDQL 262
             G+   +G  +Q+
Sbjct: 226 HQGKIEEEGPPEQV 239

Length = 256

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 62.4 bits (152), Expect = 8e-11
 Identities = 42/171 (24%), Positives = 78/171 (45%), Gaps = 42/171 (24%)

Query: 37  TVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILT 96
           +VS G GFK      L +L       +L  ++GP+GAGK++L+DV++G ++    G++L 
Sbjct: 12  SVSFG-GFK-----ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITG-KTRPQEGEVLF 64

Query: 97  NGHS--RNINAFRRVSCYI-----------------------QQDDRLQPLL-------- 123
           +G +    +   R     I                        +D  +   L        
Sbjct: 65  DGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEE 124

Query: 124 --TIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
              I+ +++ +GL + ++  ++ LS GQK+ L I + L  +P+++ LDEP 
Sbjct: 125 RRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPV 175

Length = 249

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 64.1 bits (157), Expect = 9e-11
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 30/138 (21%)

Query: 65  IAIMGPSGAGKSSLLDVLSGY---RSNGVT--GQILTNGHSRNINAFRRVSCYIQ-QDDR 118
           + ++G SG+GKS+L  +L+G     S  +   GQ L           RR+    Q     
Sbjct: 320 LGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSS 379

Query: 119 LQPLLTIEN-----------------------VMSLLGLDESQNTR-SSQLSGGQKKRLS 154
           L P +T+ +                       ++ L+GL      R   +LSGGQ++R++
Sbjct: 380 LNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVA 439

Query: 155 IALELINNPRVMFLDEPT 172
           IA  L   P+++ LDEP 
Sbjct: 440 IARALALEPKLLILDEPV 457

Length = 539

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 63.0 bits (153), Expect = 9e-11
 Identities = 49/150 (32%), Positives = 74/150 (49%), Gaps = 27/150 (18%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH---SRNINA 105
           K V+ +L       +   ++GP+GAGKS++  +L G  S    G+I   G    SR   A
Sbjct: 17  KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDR-GKITVLGEPVPSRARLA 75

Query: 106 FRRVSCYIQQDDRLQPLLTI-ENVM------------------SLLG---LDESQNTRSS 143
              +   + Q D L P  T+ EN++                  SLL    L+   + R +
Sbjct: 76  RVAIGV-VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVA 134

Query: 144 QLSGGQKKRLSIALELINNPRVMFLDEPTT 173
            LSGG K+RL++A  LIN+P+++ LDEPTT
Sbjct: 135 LLSGGMKRRLTLARALINDPQLLILDEPTT 164

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 61.4 bits (150), Expect = 1e-10
 Identities = 48/204 (23%), Positives = 80/204 (39%), Gaps = 56/204 (27%)

Query: 54  NLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA----FRRV 109
            L     + +L+ I GP+GAGK+SLL +L+G  +    G++L  G    I      + + 
Sbjct: 19  GLSFTLNAGELVQIEGPNGAGKTSLLRILAGL-ARPDAGEVLWQG--EPIRRQRDEYHQD 75

Query: 110 SCYIQQDDRLQPLLT-IENVMSLLGLDESQNTRS------------------SQLSGGQK 150
             Y+     ++  LT +EN+     L    +  +                   QLS GQ+
Sbjct: 76  LLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQ 135

Query: 151 KRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSC 210
           +R+++A                         RL      +    +  LDEP T +D Q  
Sbjct: 136 RRVALA-------------------------RL-----WLTRAPLWILDEPFTAIDKQGV 165

Query: 211 SQCIKLLKMISQQGRTIICTIHQP 234
           ++   LL   ++QG  +I T HQ 
Sbjct: 166 ARLEALLAQHAEQGGMVILTTHQD 189

Length = 204

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 61.7 bits (151), Expect = 1e-10
 Identities = 55/245 (22%), Positives = 97/245 (39%), Gaps = 70/245 (28%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH-----SRNI 103
           + +L ++       +++AI+GP+GAGKS+LL  LSG  S   +G++  NG      S   
Sbjct: 15  RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD-SGEVRLNGRPLADWSPAE 73

Query: 104 NAFRR-------------------------VSCYIQQDDRLQPLLTIENVMSLLGLDESQ 138
            A RR                               +DD L     +   ++ + L    
Sbjct: 74  LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDAL-----VAAALAQVDLAHLA 128

Query: 139 NTRSSQLSGGQKKRLSIALELINNPRVM---FLDEPTTSNPNDQKKRLSIALELINNPRV 195
                QLSGG+++R+ +A       RV+   +  +                      PR 
Sbjct: 129 GRDYPQLSGGEQQRVQLA-------RVLAQLWEPDGP--------------------PRW 161

Query: 196 MFLDEPTTGLDSQSCSQCIKLLK-MISQQGRTIICTIHQPS-ATLFQMFDQVYLLSGGQC 253
           + LDEPT+ LD       ++L + +  ++G  +I  +H  + A  +   D++ LL  G+ 
Sbjct: 162 LLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYA--DRIVLLHQGRL 219

Query: 254 LYQGA 258
           +  G 
Sbjct: 220 VADGT 224

Length = 258

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 61.4 bits (150), Expect = 1e-10
 Identities = 49/233 (21%), Positives = 104/233 (44%), Gaps = 62/233 (26%)

Query: 61  SNQLIAIMGPSGAGKSSLLDVLSGY-RSNGVTGQILTNG--------HSR---------- 101
           S +++ ++GP+GAGK++   ++ G  R +   G+IL +         H R          
Sbjct: 29  SGEIVGLLGPNGAGKTTTFYMIVGLVRPDS--GKILLDDEDITKLPMHKRARLGIGYLPQ 86

Query: 102 NINAFRRVSCY--------IQQDDR--LQPLLTIENVMSLLGLDESQNTRSSQLSGGQKK 151
             + FR+++          I++ D    +    ++ ++    +   +++++  LSGG+++
Sbjct: 87  EASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERR 146

Query: 152 RLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCS 211
           R+ IA       R                        L  NP+ + LDEP  G+D  +  
Sbjct: 147 RVEIA-------RA-----------------------LAANPKFILLDEPFAGVDPIAVI 176

Query: 212 QCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
              +++K +  +G  ++ T H    TL  + D+ Y++S G+ L +G+ +++VN
Sbjct: 177 DIQRIIKHLKDRGIGVLITDHNVRETL-DICDRAYIISDGKVLAEGSPEEIVN 228

Length = 243

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score = 62.5 bits (153), Expect = 2e-10
 Identities = 64/267 (23%), Positives = 112/267 (41%), Gaps = 79/267 (29%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDV--LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR 86
           I+ K+++        F Q  + +  L N+    P+ ++  ++G SGAGKS+L+  ++   
Sbjct: 2   IELKNISKV------FPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLE 55

Query: 87  --SNG---VTGQILTNGHSRNINAFRRVSCYIQQ-------------------------- 115
             ++G   V GQ LT    + +   RR    I Q                          
Sbjct: 56  RPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKA 115

Query: 116 --DDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT 173
               R+  LL       L+GL +  +   +QLSGGQK+R++IA  L +NP+V+       
Sbjct: 116 EIKARVTELL------ELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVL------- 162

Query: 174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIH 232
                    L               DE T+ LD  +    ++LLK I+++ G TI+   H
Sbjct: 163 ---------LC--------------DEATSALDPATTRSILELLKDINRELGLTIVLITH 199

Query: 233 QPSATLFQMFDQVYLLSGGQCLYQGAT 259
           +    + ++ D+V ++  G+ + QG  
Sbjct: 200 E-MDVVKRICDRVAVIDAGRLVEQGTV 225

Length = 343

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 45/146 (30%), Positives = 77/146 (52%), Gaps = 26/146 (17%)

Query: 67  IMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINAFRRVSCYIQQDDRLQPLLTI 125
           ++GPSG GK++LL +L+G+     +G I+ +G    N+    R    + Q   L P +T+
Sbjct: 1   LLGPSGCGKTTLLRLLAGFEQPD-SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTV 59

Query: 126 -ENV---------------------MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNP 163
            ENV                     + L+ L+E  + +  QLSGGQ++R+++A  L+  P
Sbjct: 60  EENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKP 119

Query: 164 RVMFLDEPTTSNPNDQKKRLSIALEL 189
           +++ LDEP ++   D+K R  + LEL
Sbjct: 120 KILLLDEPLSA--LDKKLRDQMQLEL 143

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 62.5 bits (152), Expect = 2e-10
 Identities = 42/152 (27%), Positives = 78/152 (51%), Gaps = 26/152 (17%)

Query: 63  QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINAFRRVSCYIQQDDRLQP 121
           ++ A++G SG GKS+LL +L+G+      GQI+ +G    ++  ++R    + Q   L P
Sbjct: 46  EIFALLGASGCGKSTLLRMLAGFEQP-TAGQIMLDGVDLSHVPPYQRPINMMFQSYALFP 104

Query: 122 LLTIEN----------------------VMSLLGLDESQNTRSSQLSGGQKKRLSIALEL 159
            +T+E                       ++ L+ + E    +  QLSGGQ++R+++A  L
Sbjct: 105 HMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSL 164

Query: 160 INNPRVMFLDEPTTSNPNDQKKRLSIALELIN 191
              P+++ LDEP  +   D+K R  + LE+++
Sbjct: 165 AKRPKLLLLDEPMGA--LDKKLRDRMQLEVVD 194

Length = 377

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 59.1 bits (144), Expect = 2e-10
 Identities = 56/222 (25%), Positives = 94/222 (42%), Gaps = 60/222 (27%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           I+ ++L+     G       + +LK+L         + I GPSG GKSSL   L+G    
Sbjct: 1   IELENLSLATPDG-------RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW 53

Query: 89  GVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG 148
           G +G+I   G     +       ++ Q    +P L +  +   L            LSGG
Sbjct: 54  G-SGRI---GMPEGEDLL-----FLPQ----RPYLPLGTLREQLIY-----PWDDVLSGG 95

Query: 149 QKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQ 208
           +++RL+ A                         RL     L++ P+ +FLDE T+ LD +
Sbjct: 96  EQQRLAFA-------------------------RL-----LLHKPKFVFLDEATSALDEE 125

Query: 209 SCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG 250
           S  +   L +++ + G T+I   H+P  +L++  D+V  L G
Sbjct: 126 SEDR---LYQLLKELGITVISVGHRP--SLWKFHDRVLDLDG 162

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 36/152 (23%)

Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG------HSRNIN 104
           VL ++    PS Q++A++GPSG+GK++LL +++G      +G I  +G      H+R+  
Sbjct: 17  VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT-SGHIRFHGTDVSRLHARD-- 73

Query: 105 AFRRVSCYIQQDDRLQPLLTIEN----------------------VMSLLG---LDESQN 139
             R+V    Q     + +   +N                      V  LL    L    +
Sbjct: 74  --RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD 131

Query: 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
              +QLSGGQK+R+++A  L   P+++ LDEP
Sbjct: 132 RYPAQLSGGQKQRVALARALAVEPQILLLDEP 163

Length = 353

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score = 59.9 bits (145), Expect = 3e-10
 Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 22/151 (14%)

Query: 41  GLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS 100
            L F +  + V   L     + + + + G +GAGK++LL VL+G      +GQI  +G +
Sbjct: 16  ALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE-SGQIQIDGKT 74

Query: 101 RNINAFR-RVSCYIQQDDRLQP-LLTIENV------------------MSLLGLDESQNT 140
                 R R   Y+     L+  L T+EN+                  ++++GL   ++T
Sbjct: 75  -ATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDT 133

Query: 141 RSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
              QLS GQKKRL++A   ++   +  LDEP
Sbjct: 134 LVRQLSAGQKKRLALARLWLSPAPLWLLDEP 164

Length = 214

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 62.3 bits (152), Expect = 3e-10
 Identities = 58/280 (20%), Positives = 114/280 (40%), Gaps = 74/280 (26%)

Query: 14  SSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGA 73
            +       T  +  ++ +++++T      +  +    LKN        + +AI+G SG+
Sbjct: 323 VTFPDEQTATTGQA-LELRNVSFT------YPGQQTKALKNFNLTLAQGEKVAILGRSGS 375

Query: 74  GKSSLLDVLSGYRSNGVTGQILTNGHS-RNIN--AFRRVSCYIQQD---------DRLQ- 120
           GKS+LL +L+G   +   G I  NG    +++  A R     + Q          D L+ 
Sbjct: 376 GKSTLLQLLAGA-WDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRL 434

Query: 121 --PLLTIENVMS----------LLGLDESQNTRSS----QLSGGQKKRLSIALELINNPR 164
             P  + E + +          L    +  NT       +LSGG+++RL++A       R
Sbjct: 435 ANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALA-------R 487

Query: 165 VMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-- 222
                                   L+++  +  LDEPT GLD  +  Q   +L ++ +  
Sbjct: 488 A-----------------------LLHDAPLWLLDEPTEGLDPITERQ---VLALLFEHA 521

Query: 223 QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
           +G+T++   H+      +  D++ +L  G+ + +G   +L
Sbjct: 522 EGKTLLMVTHR--LRGLERMDRIIVLDNGKIIEEGTHAEL 559

Length = 573

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 45/182 (24%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           I   + T T   G       K  L  L         + ++G +GAGKS+LL+ ++G    
Sbjct: 2   ISLSNATKTFFKGTP---LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKP 58

Query: 89  GVTGQILTNGHSRNINAF------RRVSCYIQQD--DRLQPLLTIENVMSL--------- 131
             +GQIL +G   ++           ++  + QD      P LTIE  ++L         
Sbjct: 59  -TSGQILIDG--VDVTKKSVAKRANLLA-RVFQDPLAGTAPELTIEENLALAESRGKKRG 114

Query: 132 ---------------------LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDE 170
                                LGL+   + R   LSGGQ++ LS+ +  ++ P+++ LDE
Sbjct: 115 LSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDE 174

Query: 171 PT 172
            T
Sbjct: 175 HT 176

Length = 263

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 59.9 bits (145), Expect = 4e-10
 Identities = 54/237 (22%), Positives = 88/237 (37%), Gaps = 77/237 (32%)

Query: 63  QLIAIMGPSGAGKSSLL------------DVLSGYRSNGVTG------------------ 92
           +L+ ++GP+GAGK++LL             V     S G                     
Sbjct: 7   ELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPI 66

Query: 93  ---QILTNGHSRNINAFRR--VSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSG 147
                + +G + +I   RR  V+ +    D L+ +          GL E  +    +LSG
Sbjct: 67  SVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRV----------GLTELADRPVGELSG 116

Query: 148 GQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDS 207
           GQ++R+ +A  L                          A      P V+ LDEP TGLD 
Sbjct: 117 GQRQRVLVARAL--------------------------ATR----PSVLLLDEPFTGLDM 146

Query: 208 QSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
            +     +L   ++  G  I+ T H  +  +    D+V LL+ G+ +  G   QL +
Sbjct: 147 PTQELLTELFIELAGAGTAILMTTHDLAQAM-ATCDRVVLLN-GRVIADGTPQQLQD 201

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 62.2 bits (151), Expect = 4e-10
 Identities = 48/200 (24%), Positives = 91/200 (45%), Gaps = 37/200 (18%)

Query: 28  EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
            ++F+ +T+       F    + V  ++     + Q +AI+GP+GAGK++L+++L     
Sbjct: 334 AVEFRHITF------EFANSSQGV-FDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD 386

Query: 88  NGVTGQILTNG---HSRNINAFRRVSCYIQQDDRL------------QPLLTIENVMS-- 130
             V GQIL +G   ++    + R+    + QD  L            +   T E V    
Sbjct: 387 PTV-GQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAA 445

Query: 131 ------------LLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPND 178
                         G D     R ++LSGG+++RL+IA  ++ N  ++ LDE T++   +
Sbjct: 446 KAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVE 505

Query: 179 QKKRLSIALELINNPRVMFL 198
            + R+  A++ +   R  F+
Sbjct: 506 TEARVKNAIDALRKNRTTFI 525

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 60.2 bits (146), Expect = 4e-10
 Identities = 55/205 (26%), Positives = 87/205 (42%), Gaps = 41/205 (20%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQILTNGHSR 101
           K  L ++    P N++ A++GPSG GKS+LL       D++ G R   +TG IL NG + 
Sbjct: 19  KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR---ITGDILYNGENI 75

Query: 102 NIN-----AFRRVSCYIQQDDRLQPLLTIENVM---SLLGLDES--------QNTRSSQL 145
             +     A RR    + Q     P    ENV     + G            ++ + + L
Sbjct: 76  MDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAAL 135

Query: 146 SGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL 205
               K R               L +   S    Q++RL IA  L  NP V+ +DEP + L
Sbjct: 136 WDEVKDR---------------LHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSAL 180

Query: 206 DSQSCSQCIKLLKMISQQGRTIICT 230
           D  + ++   L++ + ++   II T
Sbjct: 181 DPIATAKIEDLIEDLKKEYTVIIVT 205

Length = 253

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 30/136 (22%)

Query: 62  NQLIAIMGPSGAGKSSLLDVLSGY-RSNGVTGQILTNGHSRNINAF---RRVSCYIQQDD 117
            + + ++GPSG GK++LL +++G  R     G I   G  R+I      +R    + Q  
Sbjct: 30  GEFVCLLGPSGCGKTTLLRIIAGLERQT--AGTIYQGG--RDITRLPPQKRDYGIVFQSY 85

Query: 118 RLQPLLTIE-NV---------------------MSLLGLDESQNTRSSQLSGGQKKRLSI 155
            L P LT+  N+                     + L+GL  S+     QLSGGQ++R+++
Sbjct: 86  ALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVAL 145

Query: 156 ALELINNPRVMFLDEP 171
           A  L  +P ++ LDEP
Sbjct: 146 ARALATSPGLLLLDEP 161

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 61.4 bits (150), Expect = 4e-10
 Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 26/139 (18%)

Query: 60  PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH-----SRNIN---AFRRVSC 111
           P+  + AI G SGAGK+SL++ +SG  +    G+I+ NG       + I      RR+  
Sbjct: 22  PAQGITAIFGRSGAGKTSLINAISGL-TRPQKGRIVLNGRVLFDAEKGICLPPEKRRIG- 79

Query: 112 YIQQDDRLQPLLTIE----------------NVMSLLGLDESQNTRSSQLSGGQKKRLSI 155
           Y+ QD RL P   +                  +++LLG++   +     LSGG+K+R++I
Sbjct: 80  YVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAI 139

Query: 156 ALELINNPRVMFLDEPTTS 174
              L+  P ++ +DEP  S
Sbjct: 140 GRALLTAPELLLMDEPLAS 158

Length = 352

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 59.2 bits (144), Expect = 5e-10
 Identities = 52/222 (23%), Positives = 106/222 (47%), Gaps = 35/222 (15%)

Query: 48  PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHSRNINAF 106
               L ++       ++  ++GP+GAGK++ + ++ G    +  +G++L +G   +I A 
Sbjct: 12  RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD--SGEVLFDGKPLDIAAR 69

Query: 107 RRVSCYIQQDDRLQPLLTIENVM----SLLGLDESQNTRSS-------QLSGGQKKRLSI 155
            R+  Y+ ++  L P + + + +     L GL + +  R         +LS    KR+  
Sbjct: 70  NRIG-YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVE- 127

Query: 156 ALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIK 215
             EL              S  N QK +   A+  I++P ++ LDEP +GLD  +      
Sbjct: 128 --EL--------------SKGNQQKVQFIAAV--IHDPELLILDEPFSGLDPVNVELLKD 169

Query: 216 LLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
           +++ +++ G+T+I + HQ    + ++ D+V LL+ G+ +  G
Sbjct: 170 VIRELARAGKTVILSTHQ-MELVEELCDRVLLLNKGRAVLYG 210

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 59.5 bits (144), Expect = 5e-10
 Identities = 43/185 (23%), Positives = 81/185 (43%), Gaps = 33/185 (17%)

Query: 42  LGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR 101
           +G+      +L N+     + + IAI GPSG GKS+LL +++   S   +G +L  G   
Sbjct: 9   VGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISP-TSGTLLFEGEDV 67

Query: 102 N---INAFRRVSCYIQQDDRLQPLL---TIENVMSL--------------------LGLD 135
           +     A+R+   Y  Q     P L   T+E+ +                        L 
Sbjct: 68  STLKPEAYRQQVSYCAQ----TPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALP 123

Query: 136 ESQ-NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS-NPNDQKKRLSIALELINNP 193
           +S      ++LSGG+K+R+++   L   P+++ LDE T++ + ++++    +    +   
Sbjct: 124 DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQ 183

Query: 194 RVMFL 198
            V  L
Sbjct: 184 NVAVL 188

Length = 223

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 61.0 bits (148), Expect = 5e-10
 Identities = 65/269 (24%), Positives = 109/269 (40%), Gaps = 78/269 (28%)

Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG--------------YRSNGVTGQILT 96
            L N+   F  N++  I+G SG+GKS+L+   +G              Y  +      L 
Sbjct: 41  ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100

Query: 97  NGH-SRNINAF----RRVSCY------------IQQDDRLQPL-LTIENV---------M 129
               S+ I  F    RRVS              I++D    P+ L ++           +
Sbjct: 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYL 160

Query: 130 SLLGLDESQNTRSS-QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALE 188
           + +GLD+S   RS   LSGGQK+R++IA  L                          A++
Sbjct: 161 NKMGLDDSYLERSPFGLSGGQKRRVAIAGIL--------------------------AIQ 194

Query: 189 LINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL 248
               P ++  DEPT GLD +   + ++L+       +T+    H     L ++ D+V ++
Sbjct: 195 ----PEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVL-EVADEVIVM 249

Query: 249 SGGQCL-----YQGATDQLVNYLSSVNLP 272
             G+ L     Y+  TDQ +   +S+ +P
Sbjct: 250 DKGKILKTGTPYEIFTDQHIINSTSIQVP 278

Length = 320

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 55/202 (27%), Positives = 91/202 (45%), Gaps = 33/202 (16%)

Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQI----------LTNGH 99
           VLKN+     + + +A+ GPSGAGKS+LL  L   Y  +  +G+I          L    
Sbjct: 23  VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD--SGRILVRHEGAWVDLAQAS 80

Query: 100 SRNINAFRRVSC-YIQQDDRLQP-LLTIENVM-SLLGL----DESQNTRSSQLSGGQKKR 152
            R +   RR +  Y+ Q  R+ P +  +E V   LL      + ++      L+     R
Sbjct: 81  PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLA-----R 135

Query: 153 LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQ 212
           L+I   L + P       P T +  +Q+ R++IA   I +  ++ LDEPT  LD+ +   
Sbjct: 136 LNIPERLWHLP-------PATFSGGEQQ-RVNIARGFIADYPILLLDEPTASLDAANRQV 187

Query: 213 CIKLLKMISQQGRTIICTIHQP 234
            ++L+     +G  +I   H  
Sbjct: 188 VVELIAEAKARGAALIGIFHDE 209

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score = 60.0 bits (146), Expect = 6e-10
 Identities = 52/166 (31%), Positives = 75/166 (45%), Gaps = 47/166 (28%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQILTNGHSR 101
           K  L ++  R P N++ A +GPSG GKS+LL       D++   R   + G+I  +G   
Sbjct: 38  KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR---IEGEIRLDGQ-- 92

Query: 102 NINA--------FRRVSCYIQQDDRLQPLLTIENV---MSLLG------LDES--QNTRS 142
           NI           RRV    Q+ +   P    ENV   + L G      LDE+  ++ R 
Sbjct: 93  NIYDKKVDVAELRRRVGMVFQRPNPF-PKSIYENVVYGLRLQGINNRRVLDEAVERSLRG 151

Query: 143 SQ---------------LSGGQKKRLSIALELINNPRVMFLDEPTT 173
           +                LSGGQ++RL IA  +   P V+ LDEPT+
Sbjct: 152 AALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTS 197

Length = 272

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 60.8 bits (148), Expect = 6e-10
 Identities = 42/144 (29%), Positives = 73/144 (50%), Gaps = 37/144 (25%)

Query: 60  PSNQLIAIMGPSGAGKSSLLDVLSGYRS--------NGVTGQILTNGHSRNINAFRRVSC 111
            S +L+A++GPSGAGKS+LL +++G  +        NG     ++N   R+    R+V  
Sbjct: 26  KSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRD----RKVG- 80

Query: 112 YIQQDDRLQPLLTI-ENV-----------------------MSLLGLDESQNTRSSQLSG 147
           ++ Q   L P +T+ +N+                       + L+ L+   +   +QLSG
Sbjct: 81  FVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSG 140

Query: 148 GQKKRLSIALELINNPRVMFLDEP 171
           GQ++R+++A  L   P+V+ LDEP
Sbjct: 141 GQRQRVALARALAVEPKVLLLDEP 164

Length = 345

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 58.6 bits (143), Expect = 7e-10
 Identities = 66/257 (25%), Positives = 103/257 (40%), Gaps = 86/257 (33%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG--YR 86
           I  +D ++T  +G   +QE    LK++    P  +L+AI+GP G+GKSSLL  L G   +
Sbjct: 1   ISVEDASFTWDSG---EQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK 57

Query: 87  SNG---VTGQI--------LTNGHSR-NI------NA--FRRV--SCYIQQDDRLQPLLT 124
            +G   V G I        + NG  R NI      +   + +V  +C ++ D        
Sbjct: 58  LSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPD-------- 109

Query: 125 IENVMSLLGLDESQNT----RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQK 180
           +E       L +   T    +   LSGGQK+R+S+A  + ++  +  LD+P         
Sbjct: 110 LEI------LPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDP--------- 154

Query: 181 KRLSIALELINNPRVMFLDEPTTGLDSQS----CSQCI-KLLKMISQQGRTIICTIHQPS 235
             LS                    +D+         CI  LL       +T I   HQ  
Sbjct: 155 --LS-------------------AVDAHVGRHIFENCILGLLL----NNKTRILVTHQLQ 189

Query: 236 ATLFQMFDQVYLLSGGQ 252
             L    DQ+ +L  G+
Sbjct: 190 --LLPHADQIVVLDNGR 204

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 61.7 bits (150), Expect = 8e-10
 Identities = 64/262 (24%), Positives = 119/262 (45%), Gaps = 36/262 (13%)

Query: 13  SSSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSG 72
           +   +GT         I+F+D++++        +    VLK L       +++A++GPSG
Sbjct: 463 NIPLTGTLAPLNLEGLIEFQDVSFSYPN-----RPDVPVLKGLTFTLHPGEVVALVGPSG 517

Query: 73  AGKSSLLDVLSG-YRSNGVTGQILTNGHS-RNINAFRRVSCYIQQDDRL---QPLL---- 123
           +GKS++  +L   Y+  G  GQ+L +G      +       Y+ +   L   +P+L    
Sbjct: 518 SGKSTVAALLQNLYQPTG--GQVLLDGVPLVQYD-----HHYLHRQVALVGQEPVLFSGS 570

Query: 124 TIENVMSLLGLD---ESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQK 180
             EN+    GL    + +   +++ +          +E  N      + E  +     QK
Sbjct: 571 VRENI--AYGLTDTPDEEIMAAAKAANAH----DFIMEFPNGYDTE-VGEKGSQLSGGQK 623

Query: 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQ 240
           +R++IA  L+  PRV+ LDE T+ LD++ C Q ++  +  S+  RT++   H+ S    +
Sbjct: 624 QRIAIARALVRKPRVLILDEATSALDAE-CEQLLQESR--SRASRTVLLIAHRLS--TVE 678

Query: 241 MFDQVYLLSGGQCLYQGATDQL 262
             DQ+ +L  G  +  G   QL
Sbjct: 679 RADQILVLKKGSVVEMGTHKQL 700

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 59.0 bits (143), Expect = 8e-10
 Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 21/141 (14%)

Query: 52  LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR---SNGVT---GQILTNGHSRNI-- 103
           LK +       + I+++G SG GKS+LL+++SG     S GV     QI   G  R +  
Sbjct: 1   LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60

Query: 104 -------------NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQK 150
                        N    V   +    + +    +E  ++L+GL E+ + R  QLSGG K
Sbjct: 61  QNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMK 120

Query: 151 KRLSIALELINNPRVMFLDEP 171
           +R++IA  L   P+V+ LDEP
Sbjct: 121 QRVAIARALSIRPKVLLLDEP 141

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 58.8 bits (143), Expect = 8e-10
 Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 30/170 (17%)

Query: 47  EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNIN-- 104
                L +L       + + ++GPSG GK++ L +++G      +G+I   G  R++   
Sbjct: 11  GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT-SGRIYIGG--RDVTDL 67

Query: 105 -AFRRVSCYIQQDDRLQPLLTI-EN---------------------VMSLLGLDESQNTR 141
               R    + Q+  L P +T+ +N                     V  LL ++   + +
Sbjct: 68  PPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRK 127

Query: 142 SSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELIN 191
             QLSGGQ++R+++   ++  P+V  +DEP  SN  D K R+ +  EL  
Sbjct: 128 PKQLSGGQRQRVALGRAIVREPKVFLMDEP-LSNL-DAKLRVQMRAELKR 175

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 58.3 bits (142), Expect = 8e-10
 Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 22/148 (14%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           ++ KDL  +V          K++LK +       ++ A+MGP+G+GKS+L   + G+   
Sbjct: 1   LEIKDLHVSV--------GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKY 52

Query: 89  GVT-GQILTNGHS-RNINAFRRVSCYI---QQDDRLQPLLTIENVMSLLGLDESQNTRSS 143
            VT G+IL  G    ++    R    I    Q     P +   +   L  ++E       
Sbjct: 53  EVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADF--LRYVNEG------ 104

Query: 144 QLSGGQKKRLSIALELINNPRVMFLDEP 171
             SGG+KKR  I   L+  P +  LDEP
Sbjct: 105 -FSGGEKKRNEILQLLLLEPDLAILDEP 131

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 61.1 bits (149), Expect = 9e-10
 Identities = 38/188 (20%), Positives = 70/188 (37%), Gaps = 54/188 (28%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           I  ++L+             + +L+N+       + I ++G +GAGKS+LL +L+G    
Sbjct: 4   ITLENLSLAYGD--------RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAG-ELE 54

Query: 89  GVTGQILTNGHSR-------------------NINAFRRVSCYIQQDDRLQPLLT----- 124
             +G++      R                    I  F  +   + + +    LL      
Sbjct: 55  PDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDE 114

Query: 125 --------------------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPR 164
                                E  +  LG  +  +   S LSGG ++R+++A  L+  P 
Sbjct: 115 LLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRRRVALARALLEEPD 173

Query: 165 VMFLDEPT 172
           ++ LDEPT
Sbjct: 174 LLLLDEPT 181

Length = 530

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 59.8 bits (145), Expect = 9e-10
 Identities = 60/283 (21%), Positives = 118/283 (41%), Gaps = 75/283 (26%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           I+F +++YT   G  ++ +    + ++   F   +  AI+G +G+GKS+L+  ++     
Sbjct: 3   IRFDNVSYTYQKGTPYEHQ---AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP 59

Query: 89  GVTGQILTNG----------HSRNINAFRRVSCYIQ-------QDDRLQPLL-------- 123
             TG +  +           + R +   +R+    Q       +D   + ++        
Sbjct: 60  -TTGTVTVDDITITHKTKDKYIRPVR--KRIGMVFQFPESQLFEDTVEREIIFGPKNFKM 116

Query: 124 TIENVMS-----LLGLDESQNTRSS---QLSGGQKKRLSIALELINNPRVMFLDEPTTSN 175
            ++ V +     L+ L  S++  S    Q+SGGQ ++++I                    
Sbjct: 117 NLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAI-------------------- 156

Query: 176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMIS-QQGRTIICTIHQP 234
                  +SI   L  NP ++ LDEPT GLD QS  Q ++LLK +   + +TII   H  
Sbjct: 157 -------VSI---LAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM 206

Query: 235 SATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYH 277
           +  + +  D+V ++  G  + Q +  +L      +      +H
Sbjct: 207 N-EVARYADEVIVMKEGSIVSQTSPKELFKDKKKLA----DWH 244

Length = 286

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 54/178 (30%), Positives = 81/178 (45%), Gaps = 40/178 (22%)

Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLD----VLSGYRSNGVTGQILTNG---HSRNI 103
           V+K +  + P N + A+MGPSG GKS+LL     +L       V G++   G   +S ++
Sbjct: 19  VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78

Query: 104 NAF---RRVSCYIQQDDRLQPLLTI-ENV---MSLLGLDESQ------------------ 138
           +     R V    Q  +   P LTI +NV   + L GL +S+                  
Sbjct: 79  DPIEVRREVGMVFQYPNPF-PHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWD 137

Query: 139 ------NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS-NPNDQKKRLSIALEL 189
                 N   S LSGGQ++RL IA  L   P+++ +DEPT + +P    K   +  EL
Sbjct: 138 EVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL 195

Length = 253

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 60.2 bits (147), Expect = 2e-09
 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 35/141 (24%)

Query: 66  AIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNG---HSRNINAFRR--VSCYIQQDDRL 119
           A++G +GAGKS+L+ +LSG Y  +   G+IL +G      +        ++  + Q+  L
Sbjct: 38  ALLGENGAGKSTLMKILSGVYPPDS--GEILIDGKPVAFSSPRDALAAGIAT-VHQELSL 94

Query: 120 QPLLTI-EN-------------------------VMSLLGLDESQNTRSSQLSGGQKKRL 153
            P L++ EN                         +++ LGLD   +T    LS  Q++ +
Sbjct: 95  VPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMV 154

Query: 154 SIALELINNPRVMFLDEPTTS 174
            IA  L  + RV+ LDEPT +
Sbjct: 155 EIARALSFDARVLILDEPTAA 175

Length = 500

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 58.4 bits (141), Expect = 2e-09
 Identities = 60/208 (28%), Positives = 91/208 (43%), Gaps = 35/208 (16%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG------VTGQILTNGH--- 99
            + LK +   F  N++ A++GPSG GKS+ L  L+  R N       +TG +   G    
Sbjct: 18  FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLN--RMNDLIPGVTITGNVSLRGQNIY 75

Query: 100 ---SRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKR-LSI 155
                 +   ++V    QQ +   P    ENV  + GL         +L+G + K  L  
Sbjct: 76  APNEDVVQLRKQVGMVFQQPNPF-PFSIYENV--IYGL---------RLAGVKDKAVLDE 123

Query: 156 ALELINNPRVMF------LDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQS 209
           A+E       ++      L E   S    Q++R+ IA  L   P V+ LDEPT+ LD  S
Sbjct: 124 AVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPIS 183

Query: 210 CSQCIKLLKMISQQGRTIICT--IHQPS 235
            +Q   +L  +  Q   I+ T  +HQ S
Sbjct: 184 STQIENMLLELRDQYTIILVTHSMHQAS 211

Length = 252

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 58.6 bits (141), Expect = 2e-09
 Identities = 67/263 (25%), Positives = 115/263 (43%), Gaps = 21/263 (7%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY--- 85
           IKF+ + YT      F       L ++          A++G +G+GKS+LL  L+G    
Sbjct: 2   IKFEKVNYTYQPNSPFASR---ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP 58

Query: 86  -RSNGVTGQILTNGHSRN--INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRS 142
                  G I+ +  S+   I   R+    + Q    Q  L  E V+     D +   ++
Sbjct: 59  TEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ--LFEETVLK----DVAFGPQN 112

Query: 143 SQLSGGQKKRLSI-ALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP 201
             +   + ++++   LE++      +   P   +   Q +R++IA  L   P V+ LDEP
Sbjct: 113 FGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELS-GGQMRRVAIAGILAMEPEVLVLDEP 171

Query: 202 TTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD- 260
           T GLD ++  + ++L + I Q G+T++   H     +    D VYLL  G  +  G    
Sbjct: 172 TAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKGHIISCGTPSD 230

Query: 261 --QLVNYLSSVNLPCPKYHNPAD 281
             Q V++L +  L  PK  + AD
Sbjct: 231 VFQEVDFLKAHELGVPKATHFAD 253

Length = 288

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 55/213 (25%), Positives = 95/213 (44%), Gaps = 31/213 (14%)

Query: 59  FPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH-----SRNINAFRRVSCYI 113
            P   L  ++GP+G+GKS+LL +L+G       G +   G      SR   A RRV+  +
Sbjct: 24  APPGSLTGLLGPNGSGKSTLLRLLAGALR-PDAGTVDLAGVDLHGLSRRARA-RRVAL-V 80

Query: 114 QQDDRLQPLLTIENVM--------SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV 165
           +QD      LT+ +V+        SL   D       S        R     EL +    
Sbjct: 81  EQDSDTAVPLTVRDVVALGRIPHRSLWAGD-------SPHDAAVVDRALARTELSH---- 129

Query: 166 MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGR 225
              D   ++    +++R+ +A  L   P+++ LDEPT  LD ++  + + L++ ++  G 
Sbjct: 130 -LADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGV 188

Query: 226 TIICTIHQPSATLFQMF-DQVYLLSGGQCLYQG 257
           T++  +H     L   + D V +L GG+ +  G
Sbjct: 189 TVVAALH--DLNLAASYCDHVVVLDGGRVVAAG 219

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 34/179 (18%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCG---RFPSNQLIAIMGPSGAGKSSLLDVLSGY 85
           ++ K+L      G GF    K  +K + G        + + ++G SG GKS+L  ++ G 
Sbjct: 5   LEVKNLKKYFPVGKGFG--KKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL 62

Query: 86  RSNGVT-GQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQ-NTRSS 143
                T G+IL  G  ++I    +       ++R +    +  ++  +GL E        
Sbjct: 63  --EEPTSGEILFEG--KDITKLSK-------EERRE---RVLELLEKVGLPEEFLYRYPH 108

Query: 144 QLSGGQKKRLSIALELINNPRVMFLDEPTTSN---------PN---DQKKRLSIALELI 190
           +LSGGQ++R+ IA  L  NP+++  DEP  S           N   D ++ L +    I
Sbjct: 109 ELSGGQRQRIGIARALALNPKLIVADEP-VSALDVSVQAQILNLLKDLQEELGLTYLFI 166

Length = 268

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 55.9 bits (136), Expect = 3e-09
 Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 39/145 (26%)

Query: 52  LKNLCGRFPSNQ-------------LIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG 98
           L+ +  RF   +             + A++G +GAGKS+L+ +LSG      +G+IL +G
Sbjct: 3   LRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD-SGEILVDG 61

Query: 99  HSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALE 158
              +  + R         D  +    I  V               QLS G+++ + IA  
Sbjct: 62  KEVSFASPR---------DARR--AGIAMVY--------------QLSVGERQMVEIARA 96

Query: 159 LINNPRVMFLDEPTTSNPNDQKKRL 183
           L  N R++ LDEPT +    + +RL
Sbjct: 97  LARNARLLILDEPTAALTPAEVERL 121

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 38/179 (21%)

Query: 129 MSLLGLDESQNTRSS-QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL 187
           + L+GLDES   RS  +LSGGQK+R+++A  L                          A+
Sbjct: 149 IELVGLDESYLQRSPFELSGGQKRRVALAGIL--------------------------AM 182

Query: 188 ELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYL 247
           E    P  +  DEPT GLD Q   + +++   +++QG+TII   H     L +   +   
Sbjct: 183 E----PDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVL-EWTKRTIF 237

Query: 248 LSGGQCLYQGATDQLVN---YLSSVNLPCPKYHNPADFVIELASGEYGVDNINAMVEQA 303
              G+ +  G T  +++   +L   N+  PK  N   FV +L      V  + ++ E A
Sbjct: 238 FKDGKIIKDGDTYDILSDNKFLIENNMEPPKLLN---FVNKLEKKGIDVPKVTSIEELA 293

Length = 305

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 57.1 bits (138), Expect = 3e-09
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 30/139 (21%)

Query: 63  QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINAFRRVSC------YIQQ 115
           + IA++G SG+GKS+LL +L+G   +G +G++   G     ++   R         ++ Q
Sbjct: 37  ETIALIGESGSGKSTLLAILAGL-DDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQ 95

Query: 116 DDRLQPLL-TIENV---------------------MSLLGLDESQNTRSSQLSGGQKKRL 153
              L P L  +ENV                     +  LGL +  +   +QLSGG+++R+
Sbjct: 96  SFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRV 155

Query: 154 SIALELINNPRVMFLDEPT 172
           ++A      P V+F DEPT
Sbjct: 156 ALARAFNGRPDVLFADEPT 174

Length = 228

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 57.2 bits (138), Expect = 4e-09
 Identities = 49/225 (21%), Positives = 104/225 (46%), Gaps = 23/225 (10%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG--------HS 100
           + V++++     S +++ ++GP+GAGK++   ++ G       G I+ +         H+
Sbjct: 16  RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD-AGNIIIDDEDISLLPLHA 74

Query: 101 RNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELI 160
           R   A R +    Q+    + L   +N+M++L + +  +          ++R   A EL+
Sbjct: 75  R---ARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLS---------AEQREDRANELM 122

Query: 161 NNPRVMFL-DEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKM 219
               +  L D    S    +++R+ IA  L  NP+ + LDEP  G+D  S     ++++ 
Sbjct: 123 EEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEH 182

Query: 220 ISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
           +   G  ++ T H    TL  + ++ Y++S G  +  G   +++ 
Sbjct: 183 LRDSGLGVLITDHNVRETL-AVCERAYIVSQGHLIAHGTPTEILQ 226

Length = 241

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 58.7 bits (142), Expect = 4e-09
 Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 13/200 (6%)

Query: 64  LIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG---HSRNINAFRRVSCYIQQDDRLQ 120
           L+ ++GP+GAGK++LL  ++G  +    G +L  G    + +  A  R    + QD  L 
Sbjct: 31  LVGLVGPNGAGKTTLLRAINGTLTPT-AGTVLVAGDDVEALSARAASRRVASVPQDTSLS 89

Query: 121 PLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-MFLDEPTTSNPNDQ 179
               +  V+ +      +    S+     +   +     +    V  F D P TS    +
Sbjct: 90  FEFDVRQVVEM-----GRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGE 144

Query: 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLF 239
           ++R+ +A  L     V+ LDEPT  LD     + ++L++ +   G+T +  IH     L 
Sbjct: 145 RQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIH--DLDLA 202

Query: 240 QMF-DQVYLLSGGQCLYQGA 258
             + D++ LL+ G+    G 
Sbjct: 203 ARYCDELVLLADGRVRAAGP 222

Length = 402

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 57.3 bits (138), Expect = 4e-09
 Identities = 50/190 (26%), Positives = 93/190 (48%), Gaps = 16/190 (8%)

Query: 52  LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR----SNGVTGQILTNG---HSRNIN 104
           +K++   FP N + AI+GPSG GKS++L  ++       S  VTG+IL +    + R ++
Sbjct: 20  VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79

Query: 105 AF---RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQN-TRSSQLSGGQKKRLSIALELI 160
                RRV    Q+ +    +   +NV++   L+   N + + ++     KR+++  E+ 
Sbjct: 80  PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK 139

Query: 161 NNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMI 220
           +      L          Q++RL IA  +   P V+ +DEP + LD  S  +  +L++ +
Sbjct: 140 DR-----LKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEEL 194

Query: 221 SQQGRTIICT 230
            ++   II T
Sbjct: 195 KEKYTIIIVT 204

Length = 252

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 57.5 bits (139), Expect = 4e-09
 Identities = 60/248 (24%), Positives = 105/248 (42%), Gaps = 26/248 (10%)

Query: 29  IKFKDLTYTVSTGLGF-KQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
           ++ +D+T+T  TG  F  ++   VL N+       + + ++G SG GKS+L  +L G   
Sbjct: 3   LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK 62

Query: 88  NG-----VTGQILTNGHSRNINAFRRVSCYIQQD--DRLQPLLTIENVMS-----LLGLD 135
                    GQ L     +   AFRR    + QD    + P +T+  ++      L  LD
Sbjct: 63  PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLD 122

Query: 136 ESQNTRSSQLSGGQKKRLSIALELIN-NPRVMFLDEPTTSNPNDQKKRLSIALELINNPR 194
           ES+          QK R++  L+++              S    Q +R++IA  L   P+
Sbjct: 123 ESE----------QKARIAELLDMVGLRSEDADKLPRQLSG--GQLQRINIARALAVKPK 170

Query: 195 VMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL 254
           ++ LDE  + LD    +  ++LL+ + Q   T    I      +     +V ++  GQ +
Sbjct: 171 LIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV 230

Query: 255 YQGATDQL 262
            +    QL
Sbjct: 231 EECDVAQL 238

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 43/216 (19%), Positives = 75/216 (34%), Gaps = 73/216 (33%)

Query: 64  LIAIMGPSGAGKSSLLD----VLSG---------------YRSNGVTGQI-----LTNGH 99
           L  I+G +GAGK+++++     L+G                R   V  Q+       NG 
Sbjct: 24  LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGK 83

Query: 100 ----SRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSI 155
               +R++     V  +  Q +   PLL                    + SGG+K   S+
Sbjct: 84  KYTITRSLAILENV-IFCHQGESNWPLL--------DMRG--------RCSGGEKVLASL 126

Query: 156 ALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCS-QCI 214
            +                        RL++A    +N  ++ LDEPTT LD ++      
Sbjct: 127 II------------------------RLALAETFGSNCGILALDEPTTNLDEENIEESLA 162

Query: 215 KLLKMISQQG-RTIICTIHQPSATLFQMFDQVYLLS 249
           ++++    Q    +I   H     L    D +Y + 
Sbjct: 163 EIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVE 196

The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score = 56.7 bits (138), Expect = 4e-09
 Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 51/183 (27%)

Query: 28  EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR- 86
           +I+FK+++      L ++     VLKN+       + + I+G +G+GKSSLL  L  +R 
Sbjct: 2   DIEFKNVS------LRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLAL--FRL 53

Query: 87  SNGVTGQILTNGHSRNINAF------RRVSCYIQQDDRLQPLL---TI-EN--------- 127
               +G IL +G   +I+         R+S  I QD    P+L   TI  N         
Sbjct: 54  VELSSGSILIDGV--DISKIGLHDLRSRISI-IPQD----PVLFSGTIRSNLDPFGEYSD 106

Query: 128 ---------------VMSLL-GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
                          V SL  GLD         LS GQ++ L +A  L+   +++ LDE 
Sbjct: 107 EELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEA 166

Query: 172 TTS 174
           T S
Sbjct: 167 TAS 169

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 58.8 bits (143), Expect = 4e-09
 Identities = 45/142 (31%), Positives = 65/142 (45%), Gaps = 38/142 (26%)

Query: 66  AIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHSRN-------INAFRRVSCYIQQDD 117
           A+MG +GAGKS+LL +LSG Y+ +   G IL +G           + A   +   I Q+ 
Sbjct: 34  ALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMRFASTTAALAAGVAI---IYQEL 88

Query: 118 RLQPLLTI-ENVM------------------------SLLGLDESQNTRSSQLSGGQKKR 152
            L P +T+ EN+                           LG+D   +T    LS GQ++ 
Sbjct: 89  HLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQM 148

Query: 153 LSIALELINNPRVMFLDEPTTS 174
           + IA  L  N RV+  DEPT+S
Sbjct: 149 VEIAKALARNARVIAFDEPTSS 170

Length = 501

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 54/189 (28%), Positives = 81/189 (42%), Gaps = 53/189 (28%)

Query: 25  DRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL----- 79
            +I +K  DL Y      G  Q     LK +      NQ+ A++GPSG GKS+ L     
Sbjct: 2   GKISVKDLDLFY------GDFQ----ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNR 51

Query: 80  --DVLSGYRSNGVTGQILTNG-----HSRNINAFR-RVSCYIQQDDRLQPLLTIENVM-- 129
             D++   +   + G++L +G        ++N  R RV    QQ +   P+   +NV   
Sbjct: 52  MNDLIPSVK---IEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF-PMSIYDNVAYG 107

Query: 130 ------------------SLLG---LDESQNTRSSQ---LSGGQKKRLSIALELINNPRV 165
                             SL G    DE ++        LSGGQ++RL IA  L   P V
Sbjct: 108 PRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEV 167

Query: 166 MFLDEPTTS 174
           + +DEPT++
Sbjct: 168 LLMDEPTSA 176

Length = 250

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 58.6 bits (142), Expect = 5e-09
 Identities = 62/272 (22%), Positives = 127/272 (46%), Gaps = 32/272 (11%)

Query: 2   AQVEFELSNSLSSSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPS 61
           A+  F L +S    ++GT      R +++F+++T+       +    +  L ++      
Sbjct: 304 AESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFR------YPGRDRPALDSISLVIEP 357

Query: 62  NQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQP 121
            + +A++G SG+GKS+L++++  +     +GQIL +GH         ++ Y     R Q 
Sbjct: 358 GETVALVGRSGSGKSTLVNLIPRFYEPD-SGQILLDGHD--------LADYTLASLRRQV 408

Query: 122 LLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIAL------ELINN-PRVMFLDEPTTS 174
            L  ++V+ L     + N    +     +  +  AL      + ++  P  + LD P   
Sbjct: 409 ALVSQDVV-LFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLP--LGLDTPIGE 465

Query: 175 N----PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICT 230
           N       Q++RL+IA  L+ +  ++ LDE T+ LD++S       L+ +  QGRT +  
Sbjct: 466 NGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERL-MQGRTTLVI 524

Query: 231 IHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
            H+ S    +  D++ ++  G+ + +G  ++L
Sbjct: 525 AHRLST--IEKADRIVVMDDGRIVERGTHNEL 554

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 57.1 bits (138), Expect = 6e-09
 Identities = 62/266 (23%), Positives = 110/266 (41%), Gaps = 71/266 (26%)

Query: 33  DLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTG 92
           D T+ +   + F+   + +L  L   FP+ ++  ++G +G+GKS+LL +L G       G
Sbjct: 9   DTTFALR-NVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPSEG 66

Query: 93  QILTNGH---SRNINAFRRVSCYIQQ------------------------------DDRL 119
           +IL +     S +  AF R   Y+ Q                               DR 
Sbjct: 67  EILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADRE 126

Query: 120 QPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQ 179
           +    +E  +SL+GL    +     LSGG+++R  IA+ +  + R + LDEPT++     
Sbjct: 127 K----VEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSA----- 177

Query: 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATL 238
              L IA ++                        + L+  +SQ+ G T+I  +H  +   
Sbjct: 178 ---LDIAHQV----------------------DVLALVHRLSQERGLTVIAVLHDINMAA 212

Query: 239 FQMFDQVYLLSGGQCLYQGATDQLVN 264
            +  D +  L GG+ + QG   +L+ 
Sbjct: 213 -RYCDYLVALRGGEMIAQGTPAELMR 237

Length = 265

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 56.9 bits (137), Expect = 6e-09
 Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 33/202 (16%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG------VTGQILTNG---H 99
           K  LKN+  + P N + A++GPSG GKS+ +  L+  R N       + G++   G   +
Sbjct: 25  KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLN--RMNDLIKNCRIEGKVSIEGEDIY 82

Query: 100 SRNINAF---RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIA 156
             +++     + V    Q+ +   P+   +NV               ++ G  KK L   
Sbjct: 83  EPDVDVVELRKNVGMVFQKPNPF-PMSIYDNV-----------AYGPRIHGANKKDLDGV 130

Query: 157 LELINNPRVMF------LDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSC 210
           +E       ++      L  P  S    Q++RL IA  L   P+++  DEPT+ LD  S 
Sbjct: 131 VENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPIST 190

Query: 211 SQCIKLLKMISQQGRTIICTIH 232
           ++ I+ L M  ++  TI+   H
Sbjct: 191 AR-IEDLIMNLKKDYTIVIVTH 211

Length = 258

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 56.5 bits (137), Expect = 7e-09
 Identities = 43/176 (24%), Positives = 82/176 (46%), Gaps = 47/176 (26%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           I+F+++T        +    K V  NL       + + ++GPSG+GK++ + ++     N
Sbjct: 1   IEFENVTKR------YGGGKKAV-NNLNLEIAKGEFLVLIGPSGSGKTTTMKMI-----N 48

Query: 89  GV----TGQILTNGHSRNINAF-----RRVSCYIQQDDRLQPLLTI-ENV---------- 128
            +    +G+I  +G   +I        RR   Y+ Q   L P +T+ EN+          
Sbjct: 49  RLIEPTSGEIFIDG--EDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWP 106

Query: 129 -----------MSLLGLDESQ--NTRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
                      ++L+GLD ++  +    +LSGGQ++R+ +A  L  +P ++ +DEP
Sbjct: 107 KEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEP 162

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 56.3 bits (136), Expect = 8e-09
 Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 45/166 (27%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG------VTGQILTNGHSRN 102
           K  L ++   F  N++ A++GPSG+GKS+LL  ++  R N       +TG I+ NGH  N
Sbjct: 18  KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSIN--RMNDLNPEVTITGSIVYNGH--N 73

Query: 103 INAFR--------RVSCYIQQDDRLQPLLTIENV---MSLLG------LDESQNTRSSQ- 144
           I + R         +    QQ +   P+   ENV   + L G      LDE+        
Sbjct: 74  IYSPRTDTVDLRKEIGMVFQQPNPF-PMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGA 132

Query: 145 ----------------LSGGQKKRLSIALELINNPRVMFLDEPTTS 174
                           LSGGQ++R+ IA  L  +P+++ LDEPT++
Sbjct: 133 SIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSA 178

Length = 252

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 57.7 bits (140), Expect = 1e-08
 Identities = 58/254 (22%), Positives = 110/254 (43%), Gaps = 48/254 (18%)

Query: 34  LTYTVSTGLGFKQEPKDV--LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT 91
           + + +  G   ++    +  +  +       Q + ++G SG+GKS+L   L   R     
Sbjct: 284 VWFPIKGGF-LRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALL--RLIPSQ 340

Query: 92  GQILTNG---HSRNINAFRRVSCYIQ---QD--DRLQPLLTIENVMSLLGLDESQNTRSS 143
           G+I  +G      +    R +   +Q   QD    L P +T+  ++      E       
Sbjct: 341 GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIE-----EGLRVHEP 395

Query: 144 QLSGGQK-KRLSIALELINNPRVMFLDEPTTSN-PND----QKKRLSIALELINNPRVMF 197
           +LS  ++ +R+  ALE +       LD  T +  P++    Q++R++IA  LI  P ++ 
Sbjct: 396 KLSAAERDQRVIEALEEVG------LDPATRNRYPHEFSGGQRQRIAIARALILKPELIL 449

Query: 198 LDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLF---------QMFDQVYLL 248
           LDEPT+ LD    +Q + LL+ + QQ   +        + LF          +  +V ++
Sbjct: 450 LDEPTSALDRSVQAQVLDLLRDL-QQKHGL--------SYLFISHDLAVVRALCHRVIVM 500

Query: 249 SGGQCLYQGATDQL 262
             G+ + QG T+ +
Sbjct: 501 RDGKIVEQGPTEAV 514

Length = 534

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 44/154 (28%), Positives = 60/154 (38%), Gaps = 30/154 (19%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG----HSRNIN 104
             V +NL    P     AI+GP+G GKS+LL  LS   +    G +  +G    H  +  
Sbjct: 20  YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP-AHGHVWLDGEHIQHYASKE 78

Query: 105 AFRRVSCYIQQDDR----------------LQPLLT---------IENVMSLLGLDESQN 139
             RR+    Q                     QPL T         +   M   G+    +
Sbjct: 79  VARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD 138

Query: 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT 173
                LSGGQ++R  IA+ L     +M LDEPTT
Sbjct: 139 QSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTT 172

Length = 265

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 45/162 (27%)

Query: 52  LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG----YRSNGVTGQILTNGH-----SRN 102
           LKN+      NQ+ A +GPSG GKS+LL   +     Y      G+IL +G       ++
Sbjct: 29  LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88

Query: 103 INAFR-RVSCYIQQ---------------------------DDRLQPLLTIENVMSLLGL 134
           I   R +V    Q+                           D+R++  LT   +      
Sbjct: 89  IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALW----- 143

Query: 135 DESQ---NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT 173
           +E +   +     LSGGQ++RL IA  +   P V+ LDEP +
Sbjct: 144 NEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCS 185

Length = 260

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 53/250 (21%), Positives = 97/250 (38%), Gaps = 62/250 (24%)

Query: 46  QEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--- 102
              K  L+ +     + + +AI+GPSG+GKS+L  ++ G      +G +  +G       
Sbjct: 328 GGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPP-TSGSVRLDGADLKQWD 386

Query: 103 INAFRRVSCYIQQDDRLQPLLTIEN-------------------------VMSL-LGLDE 136
              F +   Y+ QD  L P    EN                         ++ L  G D 
Sbjct: 387 RETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDT 446

Query: 137 SQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVM 196
                 + LSGGQ++R+++A       R ++                        +P+++
Sbjct: 447 VIGPGGATLSGGQRQRIALA-------RALY-----------------------GDPKLV 476

Query: 197 FLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ 256
            LDEP + LD +        +K +  +G T++   H+PS       D++ +L  G+    
Sbjct: 477 VLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLL--GCVDKILVLQDGRIARF 534

Query: 257 GATDQLVNYL 266
           G  D+++  L
Sbjct: 535 GERDEVLAKL 544

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 57.3 bits (139), Expect = 1e-08
 Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 32/165 (19%)

Query: 63  QLIAIMGPSGAGKSSLLDVLSGYRS-NGVTGQILTNG---HSRNINAFRRVSCYIQQD-- 116
           Q +AI+GP+GAGKS+L+++L   R  +  +G+IL +G    +    + RR    + QD  
Sbjct: 362 QTVAIVGPTGAGKSTLINLL--QRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAG 419

Query: 117 -------DRLQ---PLLTIENVM--------------SLLGLDESQNTRSSQLSGGQKKR 152
                  D ++   P  T E +                  G D     R  QLSGG+++R
Sbjct: 420 LFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQR 479

Query: 153 LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMF 197
           L+IA  L+ +P ++ LDE T++   + + ++  AL+ +   R  F
Sbjct: 480 LAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTF 524

Length = 588

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 69/261 (26%), Positives = 114/261 (43%), Gaps = 29/261 (11%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR-- 86
           I  ++++YT   G  F+      L ++          A +G +G+GKS+++ +L+G    
Sbjct: 3   INLQNVSYTYQAGTPFEGR---ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP 59

Query: 87  SNG---VTGQILTNGHSRN--INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTR 141
           + G   V   ++T+  S+N  I   R+    + Q    Q  L  E V+  +     QN  
Sbjct: 60  TQGSVRVDDTLITS-TSKNKDIKQIRKKVGLVFQFPESQ--LFEETVLKDVAFG-PQNFG 115

Query: 142 SSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPND----QKKRLSIALELINNPRVMF 197
            SQ       R  +AL  I+       +     NP +    Q +R++IA  L   P+++ 
Sbjct: 116 VSQEEAEALAREKLALVGIS-------ESLFEKNPFELSGGQMRRVAIAGILAMEPKILV 168

Query: 198 LDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
           LDEPT GLD +   + + L K + Q G TI+   H     +    D VY+L  G+ +  G
Sbjct: 169 LDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKGKLVLSG 227

Query: 258 ATD---QLVNYLSSVNLPCPK 275
                 Q V++L    L  PK
Sbjct: 228 KPKDIFQDVDFLEEKQLGVPK 248

Length = 280

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 54/229 (23%), Positives = 98/229 (42%), Gaps = 23/229 (10%)

Query: 47  EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQILTNG- 98
           +   +LKN+    P N + A++GPSG GKS+ +       D++ G+R     G I  +G 
Sbjct: 14  DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHE---GHIYLDGV 70

Query: 99  ----HSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLD-ESQNTRSSQLSGGQKKRL 153
                + ++   R+    + Q     P    +NV   L +  E       +      K  
Sbjct: 71  DIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAA 130

Query: 154 SIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQC 213
           ++  E+ +      LD+        Q++RL IA  +  +P V+ +DEP + LD  S ++ 
Sbjct: 131 ALWDEVKDK-----LDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKI 185

Query: 214 IKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
             L+  + +    +I T +   AT    +   +L   G+ +  G TDQ+
Sbjct: 186 EDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFL--NGEIIESGLTDQI 232

Length = 250

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 57.3 bits (139), Expect = 2e-08
 Identities = 59/276 (21%), Positives = 102/276 (36%), Gaps = 79/276 (28%)

Query: 47  EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQIL-TNGHSR---- 101
           + K +LK +     + + + I+GPSG+GKS+L  +L         G    T+G  R    
Sbjct: 347 QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLL--------VGIWPPTSGSVRLDGA 398

Query: 102 -----NINAFRRVSCYIQQDDRLQPLLTIEN-------------------------VMSL 131
                +     R   Y+ QD  L      EN                         ++ L
Sbjct: 399 DLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRL 458

Query: 132 -LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELI 190
             G D       + LSGGQ++R+++A       R ++                       
Sbjct: 459 PQGYDTRIGEGGATLSGGQRQRIALA-------RALY----------------------- 488

Query: 191 NNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG 250
            +P ++ LDEP + LDS+  +     +     +G T++   H+PSA      D++ +L  
Sbjct: 489 GDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSA--LASVDKILVLQD 546

Query: 251 GQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIEL 286
           G+    G  +++   L+ V  P P+   P   V   
Sbjct: 547 GRIAAFGPREEV---LAKVLRPPPRQAKPGTVVAPG 579

Length = 580

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 40/149 (26%)

Query: 65  IAIMGPSGAGKSSLLDVL----------------SGYRSNGVTGQILTNGHSRNINAFRR 108
           +A++GPSG+GKS++L +L                  Y   G  G  L     +++   R 
Sbjct: 29  VALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGP-LVPADEKHLRQMRN 87

Query: 109 VSCYIQQDDRLQPLLT-IENV-------------------MSLL---GLDESQNTRSSQL 145
               + Q   L P  T ++NV                   M LL   GL +  +   +QL
Sbjct: 88  KIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQL 147

Query: 146 SGGQKKRLSIALELINNPRVMFLDEPTTS 174
           SGGQ++R++IA  L   P+VM  DE T++
Sbjct: 148 SGGQQQRVAIARALAMRPKVMLFDEVTSA 176

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 42/161 (26%)

Query: 52  LKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQILTNGHS--RN 102
           LK++    P+ Q+ A++GPSG GKS+LL       D++ G +   +TG++  +G     N
Sbjct: 19  LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVK---ITGKLTMDGEDIYGN 75

Query: 103 INAFR---RVSCYIQQDDRLQPLLTIENVM--------------------SLLGL---DE 136
           I+      +V    Q+ +   P+   ENV                     SL G    DE
Sbjct: 76  IDVADLRIKVGMVFQKPNPF-PMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDE 134

Query: 137 SQ---NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
            +    + +  LSGGQ++RL IA  +   P V+ +DEPT++
Sbjct: 135 VKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSA 175

Length = 249

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 55/269 (20%), Positives = 104/269 (38%), Gaps = 49/269 (18%)

Query: 63  QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---------NAFRRVSCYI 113
           ++  IMG SG+GKS+ + +L+        GQI  +G   NI            R+    +
Sbjct: 20  EIFVIMGLSGSGKSTTVRMLNRL-IEPTAGQIFIDGE--NIMKQSPVELREVRRKKIGMV 76

Query: 114 QQDDRLQPLLTI-EN---VMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLD 169
            Q   L P +TI +N      LLG  E +          +K++    L+L+      +  
Sbjct: 77  FQQFALFPHMTILQNTSLGPELLGWPEQE----------RKEKALELLKLVGLEE--YEH 124

Query: 170 EPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDS-QSCSQCIKLLKMISQQGRTII 228
                     ++R+ +A  L   P ++ +DE  + LD     S   +L K+ +   +TI+
Sbjct: 125 RYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIV 184

Query: 229 CTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPA-DFVIELA 287
              H     + ++ D++ ++  G+ +  G  D+++              NPA ++V E  
Sbjct: 185 FITHDLDEAI-RIGDRIVIMKAGEIVQVGTPDEILR-------------NPANEYVEEFI 230

Query: 288 SGE-----YGVDNINAMVEQAQNDVKPDK 311
                   +  + I   +         DK
Sbjct: 231 GKVDLSQVFDAERIAQRMNTGPITKTADK 259

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 41/159 (25%)

Query: 51  VLKNLCGRFPSN-------------QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTN 97
           VLKN+  RF SN              ++ ++GPSG GK+++L +++G       GQI  +
Sbjct: 8   VLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE-KPTEGQIFID 66

Query: 98  GHS---RNINAFRRVSCYIQQDDRLQPLLTI-ENV---------------------MSLL 132
           G     R+I   +R  C + Q   L P +++ ENV                     + L+
Sbjct: 67  GEDVTHRSIQ--QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELV 124

Query: 133 GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
            L   ++    Q+SGGQ++R+++A  LI  P+V+  DEP
Sbjct: 125 DLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEP 163

Length = 351

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 38/145 (26%)

Query: 60  PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT-GQILTNGHSRNIN--------AFRR-- 108
              ++  IMG SG+GKS+L+ +L+  R    T G+IL +G  ++I           RR  
Sbjct: 52  EEGEIFVIMGLSGSGKSTLVRLLN--RLIEPTRGEILVDG--KDIAKLSAAELRELRRKK 107

Query: 109 VSCYIQQDDRLQPLLTI-ENV---------------------MSLLGLDESQNTRSSQLS 146
           +S   Q    L P  T+ ENV                     + L+GL+   +   ++LS
Sbjct: 108 ISMVFQSFA-LLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELS 166

Query: 147 GGQKKRLSIALELINNPRVMFLDEP 171
           GG ++R+ +A  L N+P ++ +DE 
Sbjct: 167 GGMQQRVGLARALANDPDILLMDEA 191

Length = 386

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 51/183 (27%), Positives = 77/183 (42%), Gaps = 47/183 (25%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           IK KDL++  +T    +    D+ +N        ++ AI+GPSG GKS+ +  L+  R +
Sbjct: 8   IKVKDLSFYYNTSKAIEGISMDIYRN--------KVTAIIGPSGCGKSTFIKTLN--RIS 57

Query: 89  GVTGQILTNG----------HSR-NINAFRRVSCYIQQDDRLQPLLTIENV--------- 128
            + G +   G            R NIN  RR    + Q     P+   ENV         
Sbjct: 58  ELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAK 117

Query: 129 MSLLGLDE-----------------SQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
           +    LDE                   N  +  LSGGQ++RL IA  L   P+V+ +DEP
Sbjct: 118 LPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEP 177

Query: 172 TTS 174
            ++
Sbjct: 178 CSA 180

Length = 259

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 54/245 (22%), Positives = 99/245 (40%), Gaps = 64/245 (26%)

Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVL-------SGYRSNG---VTGQILTNGHS 100
           VL  +       +++AI+GPSG+GK++LL  +       +G    G   +      +   
Sbjct: 18  VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77

Query: 101 RNINAFRRVSCYIQQDDRLQPLLT-IENVM-------------------SLL---GLDES 137
             I   R+   ++ Q+  L P  T +EN++                    LL   GL   
Sbjct: 78  GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK 137

Query: 138 QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMF 197
           + +   +LSGGQ++R++IA  L                          A+     P V+ 
Sbjct: 138 ETSYPRRLSGGQQQRVAIARAL--------------------------AMR----PEVIL 167

Query: 198 LDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
            DEPT+ LD +   + +  ++ ++Q+ RT++   H+ S     + D+   +  G+ + QG
Sbjct: 168 FDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFAR-DVADRAIFMDQGRIVEQG 226

Query: 258 ATDQL 262
               L
Sbjct: 227 PAKAL 231

Length = 250

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 54/238 (22%), Positives = 91/238 (38%), Gaps = 71/238 (29%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY--R 86
           IKF+++ Y  S G   +   K  L N+         +A++G +G+GKS+L+   +     
Sbjct: 3   IKFENVDYIYSPGTPME---KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP 59

Query: 87  SNGVTG----QILTNGHSRNINAFRR-VSCYIQ--------------------------Q 115
           S+G        I     ++N+   R+ VS   Q                           
Sbjct: 60  SSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSED 119

Query: 116 DDRLQPLLTIENVMSLLGLDESQNTRSS-QLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
           + + + L  ++ V    GL E   ++S  +LSGGQ +R++IA        VM        
Sbjct: 120 EAKEKALKWLKKV----GLSEDLISKSPFELSGGQMRRVAIA-------GVM-------- 160

Query: 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIH 232
                             P ++ LDEP  GLD +   + ++L K   + G T+I   H
Sbjct: 161 ---------------AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTH 203

Length = 287

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 56.2 bits (136), Expect = 3e-08
 Identities = 57/228 (25%), Positives = 97/228 (42%), Gaps = 63/228 (27%)

Query: 65  IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG---HSRNINAFRRVSCYIQQDDRL-- 119
           +A++GPSGAGKS+L  +L  +  +  +G+IL +G      +    R     + QD  L  
Sbjct: 369 VALVGPSGAGKSTLFQLLLRF-YDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFA 427

Query: 120 ----------QPLLTIENVMS----------LLGLDESQNT----RSSQLSGGQKKRLSI 155
                     +P  T E V +          +  L E  +T    R   LSGGQ++R++I
Sbjct: 428 ASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAI 487

Query: 156 ALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIK 215
           A       R +  D P                       ++ LDE T+ LD++S  Q ++
Sbjct: 488 A-------RAILKDAP-----------------------ILLLDEATSALDAES-EQLVQ 516

Query: 216 LLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263
                  +GRT +   H+  AT+    D++ ++  G+ + QG   +L+
Sbjct: 517 QALETLMKGRTTLIIAHR-LATV-LKADRIVVMDQGRIVAQGTHAELI 562

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 29/134 (21%)

Query: 67  IMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH------SRNINAFRRVSCYIQQDDRL- 119
           + G SGAGKS+LL ++ G       G+I  +GH      +R +   RR    I QD  L 
Sbjct: 33  LTGHSGAGKSTLLKLICGIERPS-AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL 91

Query: 120 ----------QPLLT-----------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALE 158
                      PL+            +   +  +GL +       QLSGG+++R+ IA  
Sbjct: 92  MDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARA 151

Query: 159 LINNPRVMFLDEPT 172
           ++N P V+  DEPT
Sbjct: 152 VVNKPAVLLADEPT 165

Length = 222

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 55.0 bits (132), Expect = 3e-08
 Identities = 52/226 (23%), Positives = 95/226 (42%), Gaps = 75/226 (33%)

Query: 50  DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR-- 107
           +VLK +  +  +  +I+I+G SG+GKS+ L  ++ +      G I+ NG  + IN  R  
Sbjct: 19  EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN-FLEKPSEGSIVVNG--QTINLVRDK 75

Query: 108 -----------------RVSCYIQQDDRLQPLLTIENVM----SLLGL------------ 134
                            R++   Q  +    +  +ENVM     +LGL            
Sbjct: 76  DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKY 135

Query: 135 -------DESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL 187
                  + +Q      LSGGQ++R+SIA  L                          A+
Sbjct: 136 LAKVGIDERAQGKYPVHLSGGQQQRVSIARAL--------------------------AM 169

Query: 188 ELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQ 233
           E    P V+  DEPT+ LD +   + +++++ ++++G+T++   H+
Sbjct: 170 E----PEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211

Length = 257

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 53.2 bits (129), Expect = 4e-08
 Identities = 41/172 (23%), Positives = 71/172 (41%), Gaps = 50/172 (29%)

Query: 65  IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNIN----AFRRVSCYIQQDDRLQ 120
           + I G  G G++ L + L G R    +G+I  +G          A R    Y+  +DR +
Sbjct: 29  VGIAGLVGNGQTELAEALFGLRP-PASGEITLDGKPVTRRSPRDAIRAGIAYVP-EDRKR 86

Query: 121 ----PLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNP 176
                 L++   ++L          SS LSGG                            
Sbjct: 87  EGLVLDLSVAENIAL----------SSLLSGG---------------------------- 108

Query: 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTII 228
           N QK  + +A  L  +PRV+ LDEPT G+D  + ++  +L++ ++  G+ ++
Sbjct: 109 NQQK--VVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 53/221 (23%), Positives = 100/221 (45%), Gaps = 31/221 (14%)

Query: 63  QLIAIMGPSGAGKSSLLDVLSGY--RSNGVTGQILTNGHSRNINAF-----RRVS----C 111
           +++ I+G SG+GKS+LL  L+G     +G    I+ +G    +        RR+      
Sbjct: 30  EVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWG 89

Query: 112 YIQQDDRLQPLLTI-------ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPR 164
           ++ Q+ R    + +       E +M++ G     N R    +    + + I    I+   
Sbjct: 90  FVHQNPRDGLRMRVSAGANIGERLMAI-GARHYGNIR--ATAQDWLEEVEIDPTRID--- 143

Query: 165 VMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK-MISQQ 223
               D P   +   Q+ RL IA  L+  PR++F+DEPT GLD    ++ + LL+ ++   
Sbjct: 144 ----DLPRAFSGGMQQ-RLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDL 198

Query: 224 GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
           G  +I   H        +  ++ ++  G+ +  G TDQ+++
Sbjct: 199 GLAVIIVTHD-LGVARLLAQRLLVMQQGRVVESGLTDQVLD 238

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 23/195 (11%)

Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQI----------LTNGH 99
           VL+N+     + + + + GPSG+GKS+LL  L   Y  +   GQI          L    
Sbjct: 26  VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDE--GQILVRHEGEWVDLVTAE 83

Query: 100 SRNINAFRRVSC-YIQQDDRLQPLL-TIENVMSLLGLDESQNTRSSQLSGGQKKRLSIAL 157
            R +   RR +  Y+ Q  R+ P +  ++ V   L L        ++    +   L   L
Sbjct: 84  PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPL-LARGVPREVAR---AKAADL---L 136

Query: 158 ELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL 217
             +N P  ++   P T +  +Q+ R++IA   I +  ++ LDEPT  LD+ + +  ++L+
Sbjct: 137 TRLNLPERLWSLAPATFSGGEQQ-RVNIARGFIVDYPILLLDEPTASLDATNRAVVVELI 195

Query: 218 KMISQQGRTIICTIH 232
           +    +G  ++   H
Sbjct: 196 REAKARGAALVGIFH 210

Length = 235

>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins

 Score = 52.4 bits (126), Expect = 6e-08
 Identities = 38/188 (20%), Positives = 64/188 (34%), Gaps = 54/188 (28%)

Query: 59  FPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDR 118
           F    L  I GP+G+GKS++LD + G       G   +    R+      +   +     
Sbjct: 18  FGEGSLTIITGPNGSGKSTILDAI-GL----ALGGAQSATRRRSGVKAGCIVAAV----S 68

Query: 119 LQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPND 178
            + + T                   QLSGG+K+  ++AL L                   
Sbjct: 69  AELIFTR-----------------LQLSGGEKELSALALIL------------------- 92

Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATL 238
                  AL  +    +  LDE   GLD +      + +     +G  +I   H P   L
Sbjct: 93  -------ALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP--EL 143

Query: 239 FQMFDQVY 246
            ++ D++ 
Sbjct: 144 AELADKLI 151

ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 54.0 bits (130), Expect = 6e-08
 Identities = 42/194 (21%), Positives = 86/194 (44%), Gaps = 39/194 (20%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY--- 85
           ++FK +++T      +    K  L ++    P     A++G +G+GKS++  +++G    
Sbjct: 6   VEFKHVSFT------YPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLP 59

Query: 86  -----RSNGVTGQILTNGHSRNINAFRRVSCYIQQDD----------------------R 118
                    V G  LT     +I    +V    Q  D                      R
Sbjct: 60  DDNPNSKITVDGITLTAKTVWDIR--EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPR 117

Query: 119 LQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS-NPN 177
            + +  + +V++ +G+ +  ++  + LSGGQK+R++IA  L   P+++ LDE T+  +P 
Sbjct: 118 PEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPA 177

Query: 178 DQKKRLSIALELIN 191
            +++ L +  +L  
Sbjct: 178 GKEQILKLIRKLKK 191

Length = 282

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 53.9 bits (129), Expect = 6e-08
 Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 39/167 (23%)

Query: 42  LGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR 101
           L F  + + +L+ +      +++ AI+GPSG GKS+ L  L+  R N +  ++   G   
Sbjct: 13  LSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLN--RMNELESEVRVEGRVE 70

Query: 102 -----------NINAFRRVSCYIQQDDRLQPLLTIENV---MSLLGL------------- 134
                      N+N  RR    +     L P+   +NV   + ++G              
Sbjct: 71  FFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESA 130

Query: 135 -------DESQNT---RSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
                  DE ++     +  LSGGQ++RL IA  L   P+V+ +DEP
Sbjct: 131 LKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEP 177

Length = 261

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 55.0 bits (133), Expect = 7e-08
 Identities = 42/182 (23%), Positives = 73/182 (40%), Gaps = 25/182 (13%)

Query: 7   ELSNSLSSSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIA 66
             +   + +      +      I  ++L+  + T  G     + +L  L       + + 
Sbjct: 371 MDTEKPARTGRRIDFDDNADHGITLENLS--LRTPDG-----QTLLSELNFEVRPGERLL 423

Query: 67  IMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----------NAFRRVSCYIQQD 116
           I G SGAGK+SLL  L+G    G +G+I     S  +             R   CY    
Sbjct: 424 ITGESGAGKTSLLRALAGLWPWG-SGRISMPADSALLFLPQRPYLPQGTLREALCYPNAA 482

Query: 117 DRLQPLLTIENVMSLLGLD------ESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDE 170
                   +  V+  +GL       + ++     LSGG+++RL+ A  L++ P+ +FLDE
Sbjct: 483 PDFSDA-ELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDE 541

Query: 171 PT 172
            T
Sbjct: 542 AT 543

Length = 604

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 53.6 bits (129), Expect = 8e-08
 Identities = 58/222 (26%), Positives = 109/222 (49%), Gaps = 33/222 (14%)

Query: 63  QLIAIMGPSGAGKSSLLDVLSGY--RSNGVTGQILTNGHSRNI----NAFRRVSC----- 111
           +++ I+G SG+GK++LL  +SG      G     + +G  R++     A RR        
Sbjct: 33  EVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWG 92

Query: 112 YIQQD--DRLQPLLTI-----ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPR 164
           ++ Q+  D L+  ++      E +M++ G     N R    +    + + I L+ I+   
Sbjct: 93  FVHQNPRDGLRMQVSAGGNIGERLMAI-GARHYGNIR--AEAQDWLEEVEIDLDRID--- 146

Query: 165 VMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK-MISQQ 223
               D P T +   Q+ RL IA  L+  PR++F+DEPT GLD    ++ + LL+ ++ + 
Sbjct: 147 ----DLPRTFSGGMQQ-RLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL 201

Query: 224 GRTIICTIHQPS-ATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
           G  ++   H  + A L    D++ ++  GQ +  G TD++++
Sbjct: 202 GLAVVIVTHDLAVARLLA--DRLMVMKQGQVVESGLTDRVLD 241

Length = 258

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 53.4 bits (129), Expect = 9e-08
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 33/222 (14%)

Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHSRNINAFRRV 109
            LK++       + + I+G +GAGKS+LL +++G Y+    +G++   G         +V
Sbjct: 42  ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT--SGKVKVTG---------KV 90

Query: 110 SCYIQQDDRLQPLLT-IENV---MSLLGLDESQNTRSSQLSGGQKKRLSIA--LELINNP 163
           +  I+      P LT  EN+     +LGL   +           +K   I    EL +  
Sbjct: 91  APLIELGAGFDPELTGRENIYLRGLILGLTRKEI---------DEKVDEIIEFAELGD-- 139

Query: 164 RVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ 223
              F+D+P  +  +    RL+ ++     P ++ LDE     D+    +C++ L  + ++
Sbjct: 140 ---FIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK 196

Query: 224 GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNY 265
            +TI+   H   A   Q  D+   L  GQ   +G+ ++++  
Sbjct: 197 NKTIVLVSHDLGAIK-QYCDRAIWLEHGQIRMEGSPEEVIPA 237

Length = 249

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 53.5 bits (129), Expect = 9e-08
 Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 39/179 (21%)

Query: 27  IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY- 85
           ++I F+ + +       F+   +  L ++    PS   +AI+G +G+GKS+LL  L+G  
Sbjct: 1   MDITFQKVEHRYQYKTPFE---RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLL 57

Query: 86  --RSNGVT--GQILTNGHS-RNINAFR-RVSCYIQ------------------------- 114
              S  VT   +++T G   + +   R +V    Q                         
Sbjct: 58  QPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVS 117

Query: 115 QDDRLQPLLTIENVMSLLGLDESQNTRSS-QLSGGQKKRLSIALELINNPRVMFLDEPT 172
           ++D  Q       ++ L+GL E    RS  +LSGGQ +R++IA  L   P V+ LDEPT
Sbjct: 118 EEDAKQ---KAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPT 173

Length = 290

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score = 52.4 bits (126), Expect = 9e-08
 Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 35/166 (21%)

Query: 28  EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR- 86
           EI+ ++L+   +  L     P  VLKN+  +  + + I I+G +GAGKS+L  +L+ +R 
Sbjct: 6   EIEVENLSVRYAPDL-----PP-VLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRF 57

Query: 87  SNGVTGQILTNG---HSRNINAFRRVSCYIQQDDRLQPLL---TI------------ENV 128
                G+I  +G    +  +   R     I QD    P L   TI            E +
Sbjct: 58  LEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQD----PTLFSGTIRSNLDPFDEYSDEEI 113

Query: 129 MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
              L + E        LS GQ++ L +A  L+  PRV+ LDE T S
Sbjct: 114 YGALRVSEG----GLNLSQGQRQLLCLARALLKRPRVLVLDEATAS 155

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 67/246 (27%), Positives = 114/246 (46%), Gaps = 29/246 (11%)

Query: 27  IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR 86
           +E++    T+   TG  F+++  + +K L       Q +AI+G +G+GKS+L  +L+G  
Sbjct: 5   LEVRNLSKTFRYRTGW-FRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMI 63

Query: 87  SNGVTGQILTNGHSRNINAFRRVSCYIQ---QD--DRLQPLLTIENVMSL-LGLDESQNT 140
               +G++L + H  +   +   S  I+   QD    L P   I  ++   L L    NT
Sbjct: 64  EP-TSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRL----NT 118

Query: 141 RSSQLSGGQK-KRLSIALELINNPRVMFLDEPTTSNPN----DQKKRLSIALELINNPRV 195
               L   Q+ K++   L      +V  L +  +  P+     QK+RL +A  LI  P+V
Sbjct: 119 ---DLEPEQREKQIIETLR-----QVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKV 170

Query: 196 MFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIH--QPSATLFQMFDQVYLLSGGQC 253
           +  DE    LD    SQ I L  M+  Q +  I  I+  Q    +  + DQV ++  G+ 
Sbjct: 171 IIADEALASLDMSMRSQLINL--MLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEV 228

Query: 254 LYQGAT 259
           + +G+T
Sbjct: 229 VERGST 234

Length = 267

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 55.0 bits (132), Expect = 1e-07
 Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 25/139 (17%)

Query: 59   FPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH--SRNINAFRR-------- 108
            F  NQ+ A +G +GAGK++ L +L+G      +G +L  G     N++A R+        
Sbjct: 953  FYENQITAFLGHNGAGKTTTLSILTGLLPP-TSGTVLVGGKDIETNLDAVRQSLGMCPQH 1011

Query: 109  ------------VSCYIQQDDRLQ--PLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLS 154
                        +  Y Q   R      L +E ++   GL   +N  +  LSGG +++LS
Sbjct: 1012 NILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLS 1071

Query: 155  IALELINNPRVMFLDEPTT 173
            +A+  + + +V+ LDEPT+
Sbjct: 1072 VAIAFVGDAKVVVLDEPTS 1090

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 46/185 (24%)

Query: 52  LKNLCGRFPSNQLIAIMGPSGAGKSSLL-DVLSGYRSNGVTGQILTNGHSRNINAFRRVS 110
           L+NL    P N L+ + G SG+GKS+L+ + L       +   +     ++ I       
Sbjct: 11  LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI----- 65

Query: 111 CYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDE 170
                 D+LQ L  I+  +  L L +  +T    LSGG+ +R+ +A EL + P       
Sbjct: 66  ------DQLQFL--IDVGLGYLTLGQKLST----LSGGELQRVKLASELFSEPP------ 107

Query: 171 PTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICT 230
                                   +  LDEP+TGL  Q  +Q ++++K +   G T+I  
Sbjct: 108 ----------------------GTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILI 145

Query: 231 IHQPS 235
            H   
Sbjct: 146 EHNLD 150

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 60/261 (22%), Positives = 120/261 (45%), Gaps = 29/261 (11%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           IK ++LT+    G  F+   K  L N+       + + ++G +G+GKS+L+  L+G    
Sbjct: 3   IKIENLTHIYMEGTPFE---KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK- 58

Query: 89  GVTGQILTNG-----HSRNINAFRRVSCYIQQDDRLQPLL--TIENVMSL----LGLDES 137
             +G+I+ +G         ++  R+    + Q    Q L   TIE  ++     LGL E 
Sbjct: 59  PTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQ-LFEETIEKDIAFGPINLGLSEE 117

Query: 138 QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMF 197
           +           + R+  A+ ++      + D+        QK+R++IA  +   P+++ 
Sbjct: 118 E----------IENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILI 167

Query: 198 LDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
           LDEPT GLD +   + +  +K + ++    I  +      + ++ D++ +++ G+C  QG
Sbjct: 168 LDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQG 227

Query: 258 ATDQL---VNYLSSVNLPCPK 275
              ++   V  L S+ L  P+
Sbjct: 228 TPREVFKEVETLESIGLAVPQ 248

Length = 287

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 63/243 (25%), Positives = 114/243 (46%), Gaps = 27/243 (11%)

Query: 26  RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY 85
           RI+I   ++++              VL+N+    PS   +A++G +G+GKS+L  +L GY
Sbjct: 340 RIDID--NVSFAYRDD-------NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY 390

Query: 86  RSNGVTGQILTNGH---SRNINAFRRVSCYIQQDDRLQPLLTIENVMS--LLGLDESQNT 140
                 G+I  +G    S + +  R+    +QQD    P++  +  ++   LG D S+  
Sbjct: 391 YPLT-EGEIRLDGRPLSSLSHSVLRQGVAMVQQD----PVVLADTFLANVTLGRDISEEQ 445

Query: 141 RSSQLSGGQKKRLSIAL-ELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLD 199
               L   Q   L+ +L + +  P    L E   +    QK+ L++A  L+  P+++ LD
Sbjct: 446 VWQALETVQLAELARSLPDGLYTP----LGEQGNNLSVGQKQLLALARVLVQTPQILILD 501

Query: 200 EPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259
           E T  +DS +     + L  + +   T++   H+ S T+ +  D + +L  GQ + QG  
Sbjct: 502 EATANIDSGTEQAIQQALAAVREH-TTLVVIAHRLS-TIVEA-DTILVLHRGQAVEQGTH 558

Query: 260 DQL 262
            QL
Sbjct: 559 QQL 561

Length = 592

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 52/213 (24%), Positives = 96/213 (45%), Gaps = 19/213 (8%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR 108
           K  + N+    P  ++  ++GP+GAGK++   ++ G       G+I  NG   +     R
Sbjct: 15  KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGL-LEPTEGEITWNGGPLSQEIKNR 73

Query: 109 VSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQK----KRLSIALELINNPR 164
           +  Y+ ++  L P +T+E+ +  L           +L G  K    K+L   LE +    
Sbjct: 74  IG-YLPEERGLYPKMTVEDQLKYLA----------ELKGMPKAEIQKKLQAWLERLEIVG 122

Query: 165 VMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQG 224
                    S  N QK +   A+  I+ P ++ LDEP +GLD  +       +  + ++G
Sbjct: 123 KKTKKIKELSKGNQQKIQFISAV--IHEPELLILDEPFSGLDPVNVELLKDAIFELKEEG 180

Query: 225 RTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
            TII + H+    + ++ D++ +L  GQ +  G
Sbjct: 181 ATIIFSSHRME-HVEELCDRLLMLKKGQTVLYG 212

Length = 300

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 63/239 (26%), Positives = 110/239 (46%), Gaps = 25/239 (10%)

Query: 35  TYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQI 94
           T+   TGL F+++  + +K +       Q +AI+G +G+GKS+L  +L+G      +G+I
Sbjct: 13  TFRYRTGL-FRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP-TSGEI 70

Query: 95  LTNGHSRNINAFRRVSCYIQ---QD--DRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ 149
           L N H  +   +   S  I+   QD    L P L I  +     LD      +      +
Sbjct: 71  LINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQI-----LDFPLRLNTDLEPEQR 125

Query: 150 KKRLSIALELINNPRVMFLDEPTTSNPN----DQKKRLSIALELINNPRVMFLDEPTTGL 205
           +K++   L +     V  L +     P+     QK+R+++A  LI  P+++  DE    L
Sbjct: 126 RKQIFETLRM-----VGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASL 180

Query: 206 DSQSCSQCIKLLKMISQQGRTIICTIH--QPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
           D    SQ I L  M+  Q +  I  I+  Q    +  + DQV ++  G+ + +G+T  +
Sbjct: 181 DMSMRSQLINL--MLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADV 237

Length = 267

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 30/160 (18%)

Query: 41  GLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH- 99
           G+ F +  + +  N+    P  ++ AIMGPSG GK++LL ++ G  +    G+IL +G  
Sbjct: 12  GVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD-HGEILFDGEN 70

Query: 100 ----SR---------------------NINAFRRVSCYIQQDDRLQPLLTIENVMSLL-- 132
               SR                     ++N F  V+  +++  +L   L    VM  L  
Sbjct: 71  IPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEA 130

Query: 133 -GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
            GL  +     S+LSGG  +R ++A  +   P ++  DEP
Sbjct: 131 VGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEP 170

Length = 269

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 36/174 (20%)

Query: 52  LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLS----GYRSNGVTGQILTNGHS-----RN 102
           LKN+    P N++ AI+GPSG GKS+ +  L+       +  +TG++  NG +      +
Sbjct: 28  LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87

Query: 103 INAFRRVSCYIQQDDRLQPLLTIENVM--------------------SLLGL---DESQN 139
           +   R+    + Q     P    +NV                     SL  +   DE ++
Sbjct: 88  LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD 147

Query: 140 TRSSQ---LSGGQKKRLSIALELINNPRVMFLDEPTTS-NPNDQKKRLSIALEL 189
              +Q   LSGGQ++RL IA  L  NP V+ +DEPT++ +P   +K   + L+L
Sbjct: 148 RLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL 201

Length = 259

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 53.4 bits (129), Expect = 2e-07
 Identities = 37/164 (22%), Positives = 67/164 (40%), Gaps = 61/164 (37%)

Query: 62  NQLIAIMGPSGAGKSSLLDVLSG----------------------------------YRS 87
           N+ + ++G +GAGKS+L+ +L+G                                  + +
Sbjct: 29  NERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVA 88

Query: 88  NGVT--GQILTNGHS-----------RNINAFRRVSCYI------QQDDRLQPLLTIENV 128
            G+    + L   H            +N+N   ++   +      Q ++R      I  V
Sbjct: 89  EGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENR------INEV 142

Query: 129 MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
           ++ LGLD   +   S LSGG  ++ ++   L++NP V+ LDEPT
Sbjct: 143 LAQLGLDP--DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPT 184

Length = 635

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 53.3 bits (128), Expect = 3e-07
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 17/177 (9%)

Query: 63  QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----NAFRRVSCYIQQDDR 118
           +++ + G  GAG++ L+  L G       G +  NG   +I     A R     + +D +
Sbjct: 287 EILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRK 346

Query: 119 LQ---PLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM----FLDEP 171
                P+L +   ++L  L         ++       L I    I   +V     FL   
Sbjct: 347 RHGIVPILGVGKNITLSVLKSF--CFKMRID--AAAELQIIGSAIQRLKVKTASPFLPIG 402

Query: 172 TTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTII 228
             S  N QK  L+  L    NPRV+ LDEPT G+D  +  +  KL+  ++Q+G  II
Sbjct: 403 RLSGGNQQKAVLAKMLLT--NPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAII 457

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 29/162 (17%)

Query: 63  QLIAIMGPSGAGKSSLLDVLSG----------YRSN-GVTGQILTNGHSRNINAFRRVSC 111
           +++ I+G SG+GK++LL+ LS           YR   G    +     +      R    
Sbjct: 33  EVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWG 92

Query: 112 YIQQD--DRLQPLLTI-----ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPR 164
           ++ Q   D L+  ++      E +M++ G     + R++     +  R+ I    I+   
Sbjct: 93  FVHQHPRDGLRMQVSAGGNIGERLMAV-GARHYGDIRATAGDWLE--RVEIDAARID--- 146

Query: 165 VMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLD 206
               D PTT +   Q+ RL IA  L+ +PR++F+DEPT GLD
Sbjct: 147 ----DLPTTFSGGMQQ-RLQIARNLVTHPRLVFMDEPTGGLD 183

Length = 258

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 53.1 bits (128), Expect = 3e-07
 Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 43/208 (20%)

Query: 7   ELSNSLSSSESGTSLETADRIEIKFK-DLTYTVSTGLG--------FKQEP-KDVLKNLC 56
           E+  +L+  E    L      E+    D        LG        F  +P + +L  + 
Sbjct: 225 EIRQALTDMEKMFDLLDV-EAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPILNGIS 283

Query: 57  GRFPSNQLIAIMGPSGAGKSSLLDVLSGYR-SNGVTGQILTNGHS-RNI--NAFRRVSCY 112
              P  + +AI+G SGAGKS++L +L  +R  +  +G I  +G   R++   + RR    
Sbjct: 284 FTIPLGKTVAIVGESGAGKSTILRLL--FRFYDVNSGSITIDGQDIRDVTQQSLRRAIGI 341

Query: 113 IQQDDRL------------QPLLTIENVMSLL--------------GLDESQNTRSSQLS 146
           + QD  L            +P  T E V +                G D     R  +LS
Sbjct: 342 VPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLS 401

Query: 147 GGQKKRLSIALELINNPRVMFLDEPTTS 174
           GG+K+R++IA  ++ NP ++ LDE T++
Sbjct: 402 GGEKQRVAIARTILKNPPILILDEATSA 429

Length = 497

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 51.6 bits (123), Expect = 3e-07
 Identities = 56/216 (25%), Positives = 96/216 (44%), Gaps = 21/216 (9%)

Query: 59  FPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHS-----RNINAFRRV 109
           F   +L A++GPSG GKS+ L  L+    +     +TG+I   G +      ++   R+ 
Sbjct: 27  FEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKE 86

Query: 110 SCYIQQDDRLQPLLTIENV---MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM 166
              + Q     P    +NV   + + G+ + +     Q      K+ +I  E  +N    
Sbjct: 87  VGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELI--DQRVEESLKQAAIWKETKDN---- 140

Query: 167 FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRT 226
            LD    +    Q++R+ IA  L   P+V+ LDEPT+ LD  S S+  + L  +  Q   
Sbjct: 141 -LDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTF 199

Query: 227 IICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
           I+ T +   A   ++ DQ   L  G  +  G T+++
Sbjct: 200 IMVTHNLQQAG--RISDQTAFLMNGDLIEAGPTEEM 233

Length = 251

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score = 53.0 bits (128), Expect = 4e-07
 Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 32/145 (22%)

Query: 60  PSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHSRNINAFRRVSC---YIQQ 115
              Q +A++G SG+GKS++  +++G Y+     G+IL +G  R       ++     + Q
Sbjct: 503 QPGQRVALVGGSGSGKSTIAKLVAGLYQPWS--GEILFDGIPREEIPREVLANSVAMVDQ 560

Query: 116 D---------DRL---QPLLTIEN-------------VMSLLGLDESQNTRS-SQLSGGQ 149
           D         D L    P +   +             + S  G  +++     + LSGGQ
Sbjct: 561 DIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQ 620

Query: 150 KKRLSIALELINNPRVMFLDEPTTS 174
           ++RL IA  L+ NP ++ LDE T++
Sbjct: 621 RQRLEIARALVRNPSILILDEATSA 645

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 51.6 bits (123), Expect = 4e-07
 Identities = 44/194 (22%), Positives = 82/194 (42%), Gaps = 25/194 (12%)

Query: 52  LKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQILTNGH----- 99
           LK +        ++A +GPSG GKS+ L       D++   R   + G+I  +G      
Sbjct: 19  LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR---LEGEIRIDGRNIYDK 75

Query: 100 SRNINAFRRVSCYIQQDDRLQPLLTIENV---MSLLGLDESQNTRSSQLSGGQKKRLSIA 156
              ++  R+    + Q     P    ENV   + + G+ ++   R         K  ++ 
Sbjct: 76  GVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEE--TLKGAALW 133

Query: 157 LELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKL 216
            E+ +      L E   +    Q++RL IA  +  +P V+ +DEP + LD  S ++  +L
Sbjct: 134 DEVKDK-----LKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEEL 188

Query: 217 LKMISQQGRTIICT 230
           +  + +    +I T
Sbjct: 189 IHELKKDYTIVIVT 202

Length = 250

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 52.8 bits (127), Expect = 4e-07
 Identities = 58/230 (25%), Positives = 103/230 (44%), Gaps = 25/230 (10%)

Query: 48  PKDVLKNLCGRFPSNQLIAIMGPSGAGKSS----LLDVLSGYRSNGVTGQILTNGHSRNI 103
              V+KN+       + + ++G SG+GKS+    LL +++        GQ L N + R +
Sbjct: 298 HNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQL 357

Query: 104 NAFRRVSCYIQQD--DRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKK-RLSIALELI 160
              R     + QD    L P L +  ++      E        LS  Q++ ++   +E +
Sbjct: 358 LPVRHRIQVVFQDPNSSLNPRLNVLQIIE-----EGLRVHQPTLSAAQREQQVIAVMEEV 412

Query: 161 NNPRVMFLDEPTTSN--PND----QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCI 214
                  LD P T +  P +    Q++R++IA  LI  P ++ LDEPT+ LD    +Q +
Sbjct: 413 G------LD-PETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQIL 465

Query: 215 KLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
            LLK + Q+ +     I      +  +  QV +L  G+ + QG  +++  
Sbjct: 466 ALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFA 515

Length = 529

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 52.6 bits (126), Expect = 4e-07
 Identities = 53/240 (22%), Positives = 104/240 (43%), Gaps = 22/240 (9%)

Query: 42  LGFKQE--PKDVLKNLCGRFPSNQLIAIMGPSGAGKS----SLLDVLSGYRSNGVTGQIL 95
           + F QE      ++NL       + +AI+G SG+GKS    +L+ +L          ++L
Sbjct: 20  IAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKML 79

Query: 96  TNGHSRNINAFRRVSCYIQQDDR-------LQPLLTIENVMSLLGLDESQNTRSSQLSGG 148
               SR +      S    +  R        Q  +T  N +  +G   +++ R  Q +  
Sbjct: 80  LRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASR 139

Query: 149 QK-----KRLSIALELINNPRV-MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPT 202
           ++     KR+   L+ +  P     L           ++R+ IA+ L   P V+  DEPT
Sbjct: 140 EEAMVEAKRM---LDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPT 196

Query: 203 TGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
           T LD    +Q ++L+K++ ++    +  I      + ++ D+V ++  G+ +  G+ +Q+
Sbjct: 197 TALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQI 256

Length = 623

>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 35/157 (22%)

Query: 52  LKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNG-VT--GQILTNGHSR 101
           +KN+    P NQ+ A +GPSG GKS++L       D++ G+R  G VT  G+ L      
Sbjct: 26  VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85

Query: 102 NINAFRRVSCYIQQDDRLQPLLTIENVM---SLLG----LDE-----------------S 137
            +   RR+    Q+ +   P    +N+     + G    +DE                  
Sbjct: 86  PVEVRRRIGMVFQKPNPF-PKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDK 144

Query: 138 QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
                  LSGGQ++RL IA  +   P V+ +DEP ++
Sbjct: 145 LKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSA 181

Length = 264

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 51.2 bits (122), Expect = 5e-07
 Identities = 51/184 (27%), Positives = 80/184 (43%), Gaps = 16/184 (8%)

Query: 58  RFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQILTNGHSRNINA--FRR 108
           + P+ ++IA +GPSG GKS+LL       D++ G +  G       N +   IN+   RR
Sbjct: 42  KIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRR 101

Query: 109 VSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFL 168
               + Q     P    EN+ +             +L     +R +I  E+ +      L
Sbjct: 102 QVGMVFQRPNPFPKSIYENI-AFAPRANGYKGNLDELVEDSLRRAAIWEEVKDK-----L 155

Query: 169 DEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTII 228
            E  T+    Q++RL IA  +   P V+ +DEP + LD  S  Q  +L   + +Q  TII
Sbjct: 156 KEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQ-YTII 214

Query: 229 CTIH 232
              H
Sbjct: 215 MVTH 218

Length = 274

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 52.1 bits (125), Expect = 6e-07
 Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 32/155 (20%)

Query: 52  LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGV-TGQILTNGH---SRNINAFR 107
           L  +       + + + G +GAGKS+L+ +LSG   +G   G+I  +G    + NI    
Sbjct: 17  LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76

Query: 108 RVS-CYIQQDDRLQPLLTI--------------------------ENVMSLLGLDESQNT 140
           R     I Q+  L P L++                          +N++  L LD    T
Sbjct: 77  RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136

Query: 141 RS-SQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
           R      GGQ++ + IA  L    R++ LDEP++S
Sbjct: 137 RPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSS 171

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 51.1 bits (123), Expect = 6e-07
 Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 42/140 (30%)

Query: 67  IMGPSGAGKSSLLDVLSGYRSNGV----TGQILTNGHSRNINAF---------RRVSCYI 113
           IMG SG+GKS+LL  +     N +    +G++L +G  ++I A          R+    +
Sbjct: 55  IMGLSGSGKSTLLRCI-----NRLIEPTSGKVLIDG--QDIAAMSRKELRELRRKKISMV 107

Query: 114 QQDDRLQPLLTI-ENV---------------------MSLLGLDESQNTRSSQLSGGQKK 151
            Q   L P  T+ ENV                     + L+GL+  ++    +LSGG ++
Sbjct: 108 FQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQ 167

Query: 152 RLSIALELINNPRVMFLDEP 171
           R+ +A  L  +P ++ +DE 
Sbjct: 168 RVGLARALAVDPDILLMDEA 187

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 52.0 bits (125), Expect = 6e-07
 Identities = 60/252 (23%), Positives = 104/252 (41%), Gaps = 67/252 (26%)

Query: 44  FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSG------------ 84
           + Q     L+N+       Q++ I GP+G+GKS+LL       DV  G            
Sbjct: 323 YPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKL 382

Query: 85  ----YRSN-GVTGQ---ILTNGHSRNINAFRRVSCYIQQDDRLQPLLTI-ENVMSL-LGL 134
               +RS   V  Q   + ++  + NI A  R     Q+ + +  L ++ ++++ L  G 
Sbjct: 383 QLDSWRSRLAVVSQTPFLFSDTVANNI-ALGRPDATQQEIEHVARLASVHDDILRLPQGY 441

Query: 135 DESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPR 194
           D     R   LSGGQK+R+SIA       R + L+                         
Sbjct: 442 DTEVGERGVMLSGGQKQRISIA-------RALLLNA-----------------------E 471

Query: 195 VMFLDEPTTGLDSQSCSQCIKLLKMISQ--QGRTIICTIHQPSATLFQMFDQVYLLSGGQ 252
           ++ LD+  + +D ++  Q   +L  + Q  +GRT+I + H+ SA       ++ ++  G 
Sbjct: 472 ILILDDALSAVDGRTEHQ---ILHNLRQWGEGRTVIISAHRLSA--LTEASEILVMQHGH 526

Query: 253 CLYQGATDQLVN 264
              +G  DQL  
Sbjct: 527 IAQRGNHDQLAQ 538

Length = 569

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 51.0 bits (122), Expect = 6e-07
 Identities = 46/191 (24%), Positives = 86/191 (45%), Gaps = 23/191 (12%)

Query: 52  LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSC 111
           L++     P   + A++G +G+GKS+L   L G+     +G+I   G        + +  
Sbjct: 23  LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA-SGKISILGQPTRQALQKNLVA 81

Query: 112 YIQQDDRLQ---PLLTIENVM----SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPR 164
           Y+ Q + +    P+L  + VM      +G       R  Q        ++ AL      R
Sbjct: 82  YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQ-------IVTAALA-----R 129

Query: 165 VMFLD---EPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMIS 221
           V  ++            QKKR+ +A  +    +V+ LDEP TG+D ++ ++ I LL+ + 
Sbjct: 130 VDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELR 189

Query: 222 QQGRTIICTIH 232
            +G+T++ + H
Sbjct: 190 DEGKTMLVSTH 200

Length = 272

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 50.2 bits (121), Expect = 7e-07
 Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 33/221 (14%)

Query: 39  STGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTN 97
             G   +      LK++    P  + I ++G +GAGKS+LL +L+G Y  +  +G +   
Sbjct: 25  ILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD--SGTVTVR 82

Query: 98  GHSRNINAFRRVSCYIQQDDRLQPLLT-IENV---MSLLGLDESQNTRSSQLSGGQKKRL 153
           G         RVS  +       P LT  EN+     LLGL   +           +K  
Sbjct: 83  G---------RVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEI---------DEKID 124

Query: 154 SIA--LELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCS 211
            I    EL +     F+D P  +  +  K RL+ A+     P ++ +DE     D+    
Sbjct: 125 EIIEFSELGD-----FIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQE 179

Query: 212 QCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ 252
           +C + L+ + +QG+T+I   H PS+   ++ D+  +L  G+
Sbjct: 180 KCQRRLRELLKQGKTVILVSHDPSSIK-RLCDRALVLEKGK 219

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 50.6 bits (121), Expect = 8e-07
 Identities = 65/287 (22%), Positives = 120/287 (41%), Gaps = 45/287 (15%)

Query: 9   SNSLSSSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDV-------LKNLCGRFPS 61
           S+        TS E+ ++   ++ D  +     L    E  DV       LK +    P 
Sbjct: 13  SDGTDPEVETTSGESDEQTRDEWTDYEFDGDAKLSV--EDLDVYYGDDHALKGVSMDIPE 70

Query: 62  NQLIAIMGPSGAGKSSLLDVLSGY----RSNGVTGQILTNG---HSRNINAF---RRVSC 111
             + A++GPSG GKS+ L  L+      ++  + G +  +G   +   +N     +RV  
Sbjct: 71  KSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGM 130

Query: 112 YIQQDDRLQPLLTIENV---------------MSLLGLDESQNTRSSQLSGGQKKRLSIA 156
             Q  +   P    EN+                 LLG D+       +L     ++ ++ 
Sbjct: 131 VFQSPNPF-PKSIRENISYGPRKHGDINTGLLARLLGRDDKD--AEDELVERSLRQAALW 187

Query: 157 LELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKL 216
            E+  N R   LD+        Q++RL IA  L  +P V+ +DEP + LD  + S+   L
Sbjct: 188 DEV--NDR---LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDL 242

Query: 217 LKMISQQGRTIICTIHQPSATLFQMFDQV-YLLSGGQCLYQGATDQL 262
           ++ ++++   ++ T +   A   ++ DQ    L+GG+ +    TD++
Sbjct: 243 IEELAEEYTVVVVTHNMQQAA--RISDQTAVFLTGGELVEYDDTDKI 287

Length = 305

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 51.1 bits (123), Expect = 1e-06
 Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 30/142 (21%)

Query: 63  QLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNG---HSRNINAFRRVS-CYIQQDD 117
           +++++ G +GAGKS+L+ VLSG Y      G+I+  G    + NI    R     I Q+ 
Sbjct: 32  EIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQEL 91

Query: 118 RLQPLLTI-ENV----------------MSL--------LGLDESQNTRSSQLSGGQKKR 152
            L   L++ EN+                M L        L LD +  T    L  GQ++ 
Sbjct: 92  ALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQL 151

Query: 153 LSIALELINNPRVMFLDEPTTS 174
           + IA  L    R++ LDEPT S
Sbjct: 152 VEIAKALNKQARLLILDEPTAS 173

Length = 506

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 51.3 bits (123), Expect = 1e-06
 Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 28/108 (25%)

Query: 143 SQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRV--MFLDE 200
             LSGG++   S+AL                        RL+++  L    R+  +FLDE
Sbjct: 814 KTLSGGERFLASLAL------------------------RLALSDLLQGRARLELLFLDE 849

Query: 201 PTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL 248
           P   LD +   +  ++L+ +   GR II   H     L +  D    +
Sbjct: 850 PFGTLDEERLEKLAEILEELLSDGRQIIIISHVEE--LKERADVRIRV 895

Length = 908

>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 53/234 (22%), Positives = 99/234 (42%), Gaps = 27/234 (11%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT-GQILTNGHSRNINAFR 107
            ++LK L       ++ AIMGP+G+GKS+L  V++G+ +  +  G IL  G   +I    
Sbjct: 20  NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKG--ESI---- 73

Query: 108 RVSCYIQQDDR--------LQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALEL 159
                ++ ++R         Q  + I  V +   L  + N++       +   L   LE+
Sbjct: 74  ---LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEF-LEI 129

Query: 160 INNPRVMFLDEPT--TSNPND-----QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQ 212
           IN    +   +P+  + N N+     +KKR  I    + +  +  LDE  +GLD  +   
Sbjct: 130 INEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKI 189

Query: 213 CIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYL 266
             + +  +     +II   H      +   D V+++  G+ +  G  + L   L
Sbjct: 190 IAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAE-LAKEL 242

Length = 252

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 50.6 bits (122), Expect = 1e-06
 Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 18/171 (10%)

Query: 66  AIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHSRNIN----AFRRVSCYIQQDDRLQ 120
           A++G +GAGKS+L+ +L G Y+ +   G+I  +G    I     A R     + Q   L 
Sbjct: 34  ALLGENGAGKSTLMKILFGLYQPDS--GEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLV 91

Query: 121 PLLTI-ENVMSLLGLDESQNTRSSQLSGGQKK--RLSIALELINNPRVMFLDEPTTSNPN 177
           P LT+ EN++  LGL+ S+          + +   LS    L  +P     D        
Sbjct: 92  PTLTVAENII--LGLEPSKGGLID-RRQARARIKELSERYGLPVDP-----DAKVADLSV 143

Query: 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTII 228
            +++R+ I   L    R++ LDEPT  L  Q   +  ++L+ ++ +G+TII
Sbjct: 144 GEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTII 194

Length = 501

>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 44/195 (22%), Positives = 64/195 (32%), Gaps = 65/195 (33%)

Query: 62  NQLIAIMGPSGAGKSSLLDVLS--------GYRSNGVTGQILTNGHSRNINAFRRVSCYI 113
           N L  I GP+GAGKS++LD ++         Y        +   G          VS   
Sbjct: 28  NGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGE-----DTAEVSFTF 82

Query: 114 QQDDRLQPLLTIENVMSLLGLDESQNTRS----------------SQLSGGQKKRLSIAL 157
           Q   +         V    GLD  Q TR                 S LSGG+    S++L
Sbjct: 83  QLGGKKY------RVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSL 136

Query: 158 -----ELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQ 212
                E++ N                   R    LE       +F+DE    LD ++   
Sbjct: 137 ALALSEVLQN-------------------RGGARLEA------LFIDEGFGTLDPEALEA 171

Query: 213 CIKLLKMISQQGRTI 227
               L++I  + R +
Sbjct: 172 VATALELIRTENRMV 186

SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. Length = 213

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 44/189 (23%), Positives = 89/189 (47%), Gaps = 36/189 (19%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRS 87
           IK ++++++      +     + LKN+       + +AI+G +G+GKS++  +L+G  + 
Sbjct: 8   IKVENVSFS------YPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP 61

Query: 88  NGVTGQILTNG---HSRNINAFRRVSCYIQQ------------DD--------RLQP--- 121
               G+I  +G      N+   R+    I Q            DD        ++ P   
Sbjct: 62  QS--GEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKM 119

Query: 122 LLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS-NPNDQK 180
              I+++   +G+++  +     LSGGQK+R++IA  L  NP ++  DE T+  +P  ++
Sbjct: 120 KDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKR 179

Query: 181 KRLSIALEL 189
           +   I ++L
Sbjct: 180 EIKKIMVDL 188

Length = 271

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 46/197 (23%)

Query: 19  TSLETADRIEIKFKDLTYTVST-GLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSS 77
           T     +R  I F +    +ST  L      K+ +K +  +F  N++ A++GPSG+GKS+
Sbjct: 2   TKYNWNERHIITFPEEEIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKST 61

Query: 78  LLDVLSGYRSNG------VTGQILTNG---HSRNINAF---RRVSCYIQQDDRLQPLL-T 124
            L  L+  R N       VTGQIL  G   + + IN +   + +    Q   R  P   +
Sbjct: 62  YLRSLN--RMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQ---RPNPFAKS 116

Query: 125 I-ENVMSLLG---------LDESQNTRSSQ-----------------LSGGQKKRLSIAL 157
           I EN+   L          LDE   T   Q                 LSGGQ++RL IA 
Sbjct: 117 IYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIAR 176

Query: 158 ELINNPRVMFLDEPTTS 174
            +   P ++ +DEP ++
Sbjct: 177 AIAVKPDILLMDEPASA 193

Length = 267

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.7 bits (118), Expect = 2e-06
 Identities = 50/199 (25%), Positives = 91/199 (45%), Gaps = 19/199 (9%)

Query: 44  FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQILT 96
           +    K VL +L      N++ A +GPSG GKS+ L       D++ G    G    + T
Sbjct: 90  YMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGT 149

Query: 97  NGHSRNINAFR---RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL 153
           N  S+ I++     R+    Q+    +  ++I + ++    +   N R       +K   
Sbjct: 150 NTRSKKISSLELRTRIGMVFQKPTPFE--MSIFDNVAYGPRNNGINDRKILEKIVEKSLK 207

Query: 154 SIAL--ELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCS 211
           S AL  E+ ++     LD+   +    Q++RL IA  +   P V+ +DEPT+ LD  + +
Sbjct: 208 SAALWDEVKDD-----LDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA 262

Query: 212 QCIKLLKMISQQGRTIICT 230
           +  +L+  + ++   II T
Sbjct: 263 KIEELILELKKKYSIIIVT 281

Length = 329

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 49/175 (28%)

Query: 63  QLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHS------------------RNI 103
           ++++++GP+GAGK+++ + L+G Y+  G  G IL  G                    +++
Sbjct: 32  EIVSLIGPNGAGKTTVFNCLTGFYKPTG--GTILLRGQHIEGLPGHQIARMGVVRTFQHV 89

Query: 104 NAFRRVSC----YIQQDDRLQPLL----------------TIENVMSLL---GLDESQNT 140
             FR ++      + Q  +L+  L                 ++   + L   GL E  N 
Sbjct: 90  RLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149

Query: 141 RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS-NPNDQKKRLSIALELINNPR 194
           ++  L+ GQ++RL IA  ++  P ++ LDEP    NP  + K L    ELI   R
Sbjct: 150 QAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPK-ETKELD---ELIAELR 200

Length = 255

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 47/189 (24%), Positives = 86/189 (45%), Gaps = 36/189 (19%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           I FK++++   +   F       LK++    P  Q  +I+G +G+GKS++  ++ G    
Sbjct: 8   IVFKNVSFQYQSDASF------TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV 61

Query: 89  GVTGQILTNGHSRNINAFRRVSCYIQ---QDDRLQPLLTI---------EN--------- 127
             +G+I  N  +   + F ++  +I    Q+   Q + +I         EN         
Sbjct: 62  K-SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMH 120

Query: 128 -----VMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKR 182
                 +  + + E  +   + LSGGQK+R++IA  L  NP V+ LDE T+    D ++ 
Sbjct: 121 RRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQN 180

Query: 183 LSIALELIN 191
           L   L+L+ 
Sbjct: 181 L---LDLVR 186

Length = 269

>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 55/228 (24%), Positives = 94/228 (41%), Gaps = 25/228 (10%)

Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-----YRSNG--VTGQILTNGHS-RN 102
           +L++L  R    ++ A++G +GAGKS+LL  L+G         G  VTG +  NG     
Sbjct: 16  ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75

Query: 103 INAFRRVSC----YIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALE 158
           I+A  R++       Q           E V  LLG       R+  L+    +    AL 
Sbjct: 76  IDA-PRLARLRAVLPQAAQPAFAFSAREIV--LLGR-YPHARRAGALTHRDGEIAWQALA 131

Query: 159 LINNPRVMFLDEPTTSNPNDQKKRLSIAL-------ELINNPRVMFLDEPTTGLDSQSCS 211
           L     ++  D  T S     + + +  L       +    PR + LDEPT  LD     
Sbjct: 132 LAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQH 191

Query: 212 QCIKLLKMISQQGRTIICTI-HQPSATLFQMFDQVYLLSGGQCLYQGA 258
           + +  ++ +++     +  I H P+    +  D++ +L+ G  +  GA
Sbjct: 192 RLLDTVRRLARDWNLGVLAIVHDPNLAA-RHADRIAMLADGAIVAHGA 238

Length = 272

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 50.0 bits (120), Expect = 3e-06
 Identities = 41/165 (24%), Positives = 68/165 (41%), Gaps = 49/165 (29%)

Query: 61  SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTN--------GHSRNINAFR----- 107
             +++ I+GP+G GKS+ L +L+G        ++  N             I  FR     
Sbjct: 99  PGKVVGILGPNGIGKSTALKILAG--------ELKPNLGRYEDPPSWDEVIKRFRGTELQ 150

Query: 108 -----------RVSCYIQQDDRL--------QPLLT-------IENVMSLLGLDESQNTR 141
                      R     Q  D +          LL         + V+  LGL+   +  
Sbjct: 151 NYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRD 210

Query: 142 SSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIA 186
            S+LSGG+ +R++IA  L+ +  V F DEP++    D ++RL+ A
Sbjct: 211 VSELSGGELQRVAIAAALLRDADVYFFDEPSSY--LDIRQRLNAA 253

Length = 591

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 55/190 (28%), Positives = 80/190 (42%), Gaps = 54/190 (28%)

Query: 23  TADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL--- 79
           TA  I+++ +D    VS   G KQ   DV  ++    P   + A +GPSG GKS+ L   
Sbjct: 14  TATEIKMRARD----VSVFYGEKQALFDVDLDI----PEKTVTAFIGPSGCGKSTFLRCL 65

Query: 80  ----DVLSGYRSNGVTGQILTNGHSRNINAFR--------RVSCYIQQDD---------- 117
               D + G R   VTG+I  +G   +I   R        RV    Q+ +          
Sbjct: 66  NRMNDTIDGCR---VTGKITLDGE--DIYDPRLDVVELRARVGMVFQKPNPFPKSIYENV 120

Query: 118 ----RLQPLLT--------IENVMSLLGLDESQNTRSSQ----LSGGQKKRLSIALELIN 161
               R+  L          +E  +   GL E    R  +    LSGGQ++RL IA  +  
Sbjct: 121 AYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAV 180

Query: 162 NPRVMFLDEP 171
           +P V+ +DEP
Sbjct: 181 SPEVILMDEP 190

Length = 267

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 49.5 bits (119), Expect = 3e-06
 Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 35/152 (23%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR 108
           K ++ +L  + P   ++ ++GP+GAGKS+L  ++        TGQ   +  +  I    +
Sbjct: 335 KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMI--------TGQEQPDSGTIKIGETVK 386

Query: 109 VSCYIQQDDRLQPLLTIENVMSLLGLDE----------------------SQNTRSSQLS 146
           ++   Q  D L P  T+   +S  GLD                        Q  +  QLS
Sbjct: 387 LAYVDQSRDALDPNKTVWEEISG-GLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLS 445

Query: 147 GGQKKRLSIALELINNPRVMFLDEPTTSNPND 178
           GG++ R+ +A  L +   V+ LDEPT    ND
Sbjct: 446 GGERNRVHLAKTLKSGGNVLLLDEPT----ND 473

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 50.0 bits (119), Expect = 4e-06
 Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 13/181 (7%)

Query: 55   LCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS--RNINAFRRVSCY 112
            LC      +   ++G +GAGK++   +L+G  +   +G     G S   NI+   +   Y
Sbjct: 1958 LCVGVRPGECFGLLGVNGAGKTTTFKMLTG-DTTVTSGDATVAGKSILTNISDVHQNMGY 2016

Query: 113  IQQDDRLQPLLTIENVMSLLG-LDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
              Q D +  LLT    + L   L         +++    + L ++L         + D  
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSL---------YADRL 2067

Query: 172  TTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTI 231
              +     K++LS A+ LI  P ++ LDEPTTG+D Q+       +  I ++GR ++ T 
Sbjct: 2068 AGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTS 2127

Query: 232  H 232
            H
Sbjct: 2128 H 2128

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 49.4 bits (118), Expect = 4e-06
 Identities = 61/294 (20%), Positives = 117/294 (39%), Gaps = 77/294 (26%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS- 87
           I+ K+LT         K + K+VLKN+       +++ I+G SGAGKS L+ VL G    
Sbjct: 1   IEVKNLTK--------KFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQY 52

Query: 88  NGVTGQILTN-----------------------------------GHSRNI--NAFRRVS 110
              +G+I+ +                                     S  +     +R++
Sbjct: 53  EPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIA 112

Query: 111 CYIQQ------DDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELIN--- 161
             +Q+      DD +     ++NV+  L           ++    K+ +  A++LI    
Sbjct: 113 IMLQRTFALYGDDTV-----LDNVLEAL----------EEIGYEGKEAVGRAVDLIEMVQ 157

Query: 162 -NPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIK-LLKM 219
            + R+  +    +     +K+R+ +A +L   P +   DEPT  LD Q+       L + 
Sbjct: 158 LSHRITHIARDLSGG---EKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEA 214

Query: 220 ISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN-YLSSVNLP 272
           +   G +++ T H P   +  + D+   L  G+   +G  D++V  ++  V+  
Sbjct: 215 VKASGISMVLTSHWPE-VIEDLSDKAIWLENGEIKEEGTPDEVVAVFMEGVSEV 267

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 7/121 (5%)

Query: 147 GGQKKRLSIALELINNPRVMFLDEPTTSNPND----QKKRLSIALELINNPRVMFLDEPT 202
           G +K+R   A+EL++   +    +   S P +    + +++ IA+ L N PR++  DEPT
Sbjct: 130 GWRKRR---AIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPT 186

Query: 203 TGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
             ++  + +Q  +LL  ++Q   T I  I      + Q  D++ +L  GQ +    +++L
Sbjct: 187 NSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEEL 246

Query: 263 V 263
           V
Sbjct: 247 V 247

Length = 330

>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional

 Score = 47.6 bits (113), Expect = 4e-06
 Identities = 44/195 (22%), Positives = 90/195 (46%), Gaps = 18/195 (9%)

Query: 42  LGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS- 100
           L F    + +L+ +    P+  L+ + G +GAGK++LL +++G   N   G+IL    S 
Sbjct: 7   LDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL-NPEKGEILFERQSI 65

Query: 101 -RNINAFRRVSCYIQQDDRLQPLLTI-ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALE 158
            +++  +++  C++     + P LT+ EN +  +      +     +   +  RL  +LE
Sbjct: 66  KKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDI------HFSPGAVGITELCRL-FSLE 118

Query: 159 LINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK 218
                    +D P     + QK+++++    ++  ++  LDEP   LD  S    I  ++
Sbjct: 119 -------HLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQ 171

Query: 219 MISQQGRTIICTIHQ 233
               +G  ++ T HQ
Sbjct: 172 EHRAKGGAVLLTSHQ 186

Length = 200

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 62/262 (23%), Positives = 116/262 (44%), Gaps = 30/262 (11%)

Query: 13  SSSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSG 72
           ++  SG    ++    I+ +DL    +   G +Q   DV  ++    P NQ+ A++GPSG
Sbjct: 24  TTDPSGDPAASSGETVIEARDL----NVFYGDEQALDDVSMDI----PENQVTAMIGPSG 75

Query: 73  AGKSSLL-------DVLSGYRSNGVTGQILTNGHSRNIN--AFRRVSCYIQQDDRLQPLL 123
            GKS+ L       D++   R  G       N +  +++  A RR    + Q     P  
Sbjct: 76  CGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKS 135

Query: 124 TIENV---MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQK 180
             +NV   + + G D   + R  +      +R ++  E+ +      LD         Q+
Sbjct: 136 IYDNVAYGLKIQGYDGDIDERVEE----SLRRAALWDEVKDQ-----LDSSGLDLSGGQQ 186

Query: 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQ 240
           +RL IA  +  +P V+ +DEP + LD  + S+   L++ ++++   +I T +   A    
Sbjct: 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARIS 246

Query: 241 MFDQVYLLSGGQCLYQGATDQL 262
               V+ L+GG+ +    TD++
Sbjct: 247 DKTAVF-LTGGELVEFDDTDKI 267

Length = 285

>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 39/158 (24%)

Query: 50  DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN------GVTGQILTNG---HS 100
           + +KN+    P  ++ A++GPSG GKS++L  L+  R N       + G++L +G   + 
Sbjct: 27  EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLN--RMNDLIEGCSLKGRVLFDGTDLYD 84

Query: 101 RNINAF---RRVSCYIQQDDRLQPLLTIENV------------MSLLG---------LDE 136
             ++     RR+    QQ +   P    EN+            M  L           DE
Sbjct: 85  PRVDPVEVRRRIGMVFQQPNPF-PKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDE 143

Query: 137 SQ---NTRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
            +   N     LSGGQ++RL IA  +   P V+ +DEP
Sbjct: 144 CKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEP 181

Length = 269

>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

 Score = 49.1 bits (117), Expect = 6e-06
 Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 34/176 (19%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKD------------------VLKNLCGRFPSNQLIAIMGP 70
           IKFK++T T ++ L  K  P +                  VL+NL        ++A++G 
Sbjct: 358 IKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQ 417

Query: 71  SGAGKSSLLDVLSG---------YRSNGVTGQILTNGHSRNI-----NAFRRVSCYIQQD 116
           SGAGK++LL ++ G         YR +    ++  N  S  I       F  V+      
Sbjct: 418 SGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLR 477

Query: 117 DRLQPLLTIENVMSLLGL-DESQNTRS-SQLSGGQKKRLSIALELINNPRVMFLDE 170
            +   L     +++  GL D     R  S+LS GQK+R  +A  L   P V+ +DE
Sbjct: 478 SKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDE 533

Length = 593

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.0 bits (114), Expect = 6e-06
 Identities = 58/229 (25%), Positives = 96/229 (41%), Gaps = 27/229 (11%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQILTNGHS- 100
           K  + ++      + + A++GPSG GKS+ L       D++   RS G   +IL  G + 
Sbjct: 34  KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEG---EILYEGLNI 90

Query: 101 --RNIN--AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIA 156
              NIN    RR    + Q     P     N+     L  +   R S L    ++ L+ A
Sbjct: 91  LDSNINVVNLRREIGMVFQKPNPFPKSIYNNITH--ALKYAGERRKSVLDEIVEESLTKA 148

Query: 157 L---ELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQC 213
               E+ +      L     S    Q++RL IA  L   P V+ LDEP + LD  S ++ 
Sbjct: 149 ALWDEVKDR-----LHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKI 203

Query: 214 IKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
            +L+  + ++   II T +   A   ++ D+      G  +    T+Q+
Sbjct: 204 EELITELKEEYSIIIVTHNMQQA--LRVSDRTAFFLNGDLVEYDQTEQI 250

Length = 268

>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 48.1 bits (114), Expect = 7e-06
 Identities = 55/256 (21%), Positives = 112/256 (43%), Gaps = 27/256 (10%)

Query: 35  TYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQI 94
           TY   T   FK      L N    F  N++  ++G +G+GKS+++ + +G   +  TGQ 
Sbjct: 15  TYAKKTPFEFK-----ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE-TGQT 68

Query: 95  LTNGHS--------RNINAFRRVSCYIQQDDRLQPLL-TIENVMSLLGLDESQNTRSSQL 145
           +   ++        + +   R+    + Q    Q    TIE  ++   ++  +N + +  
Sbjct: 69  IVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAY- 127

Query: 146 SGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL 205
                K++   L+L+  P       P   +   QK+R+++A  +  +   + LDEPT GL
Sbjct: 128 -----KKVPELLKLVQLPEDYVKRSPFELS-GGQKRRVALAGIIAMDGNTLVLDEPTGGL 181

Query: 206 DSQSCSQCIKL-LKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL-- 262
           D +     I L  ++  +  + II   H     L ++ D+V ++  G+ +  G+  ++  
Sbjct: 182 DPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVL-RIADEVIVMHEGKVISIGSPFEIFS 240

Query: 263 -VNYLSSVNLPCPKYH 277
               L+ + +  PK +
Sbjct: 241 NQELLTKIEIDPPKLY 256

Length = 289

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 47.7 bits (113), Expect = 7e-06
 Identities = 58/235 (24%), Positives = 95/235 (40%), Gaps = 43/235 (18%)

Query: 52  LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG----YRSNGVTGQILTNGHSRNI---- 103
           LKN+       Q+ A++GPSG GKS+ L   +     Y  N   G+I+ +  + NI    
Sbjct: 32  LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91

Query: 104 ----NAFRRVSCYIQQDDRLQPLLTIENVM-----------SLLGLDESQNTRSSQLSGG 148
                   R+S   Q+ +   P    ENV            S+L        R++ L   
Sbjct: 92  VDPIEVRMRISMVFQKPNPF-PKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDE 150

Query: 149 QKKRL-SIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDS 207
            K RL  +A  L                   Q++RL IA  L  +P ++  DEPT+ LD 
Sbjct: 151 VKDRLGDLAFNL----------------SGGQQQRLCIARALATDPEILLFDEPTSALDP 194

Query: 208 QSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
            + +   +L+  +  +   +I T +   A   ++ D    +  G+ +  GATD +
Sbjct: 195 IATASIEELISDLKNKVTILIVTHNMQQAA--RVSDYTAYMYMGELIEFGATDTI 247

Length = 265

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 47.8 bits (114), Expect = 7e-06
 Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 31/161 (19%)

Query: 41  GLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS--NGVT---GQIL 95
           GL  K + + VL N+     S + +A++G SG GKS+L  +L G  S   G     G+ L
Sbjct: 17  GLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPL 76

Query: 96  TNGHSRNINAFRRVSCYIQQD--DRLQPLLTI-----ENVMSLLGLDESQ---------- 138
              +     AFRR    + QD    + P  T+     E +  LL LD+++          
Sbjct: 77  AKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLR 136

Query: 139 ---------NTRSSQLSGGQKKRLSIALELINNPRVMFLDE 170
                    + R  QLSGGQ +R+ +A  L   P+++ LDE
Sbjct: 137 AVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDE 177

Length = 268

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 47.6 bits (113), Expect = 7e-06
 Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 43/165 (26%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQILTNG--- 98
           K  L ++      N++ A++GPSG GKS+ L       D++S  +   + G++L +G   
Sbjct: 17  KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVK---IEGEVLLDGKNI 73

Query: 99  HSRNINAF---RRVSCYIQQDDRLQPLLTIENVM---SLLGLDESQ-------------- 138
           + ++++     +RV    Q+ +   P+   +NV     + G+ + +              
Sbjct: 74  YDKDVDVVELRKRVGMVFQKPNPF-PMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAA 132

Query: 139 ---------NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
                       + +LSGGQ++RL IA  +   P V+ +DEPT++
Sbjct: 133 LWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSA 177

Length = 251

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 47.6 bits (114), Expect = 1e-05
 Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 29/179 (16%)

Query: 67  IMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNIN----AFRRVSCYIQQD---DRL 119
           I G  GAG++ L+  L G       G+I  +G    I     A  +    + +D   D +
Sbjct: 293 IAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGI 352

Query: 120 QPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNP--- 176
            P++ +   ++L  LD  + T  S++       L   LE I   +V       T++P   
Sbjct: 353 VPVMGVGKNITLAALD--RFTGGSRIDDA--AELKTILESIQRLKV------KTASPELA 402

Query: 177 -------NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTII 228
                  N QK  L+  L L  NP+++ LDEPT G+D  +  +  KL+  + QQG  II
Sbjct: 403 IARLSGGNQQKAVLAKCLLL--NPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAII 459

Length = 506

>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 61/292 (20%), Positives = 96/292 (32%), Gaps = 84/292 (28%)

Query: 2   AQVEF----ELSNSLSSSESGTSLETADRI----------EIKFKDLTYT---VSTGLGF 44
           AQ+      +     +  E    L  AD +           I+ KD+           GF
Sbjct: 297 AQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGF 356

Query: 45  KQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGH---- 99
              P D+      R     ++ I+G +G GKS+L  +  G Y      G+IL +G     
Sbjct: 357 ALGPIDL------RIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ--EGEILLDGAAVSA 408

Query: 100 ----------SRNINAFRRVSCYIQQDDRLQP----------LLTIENVMSLLGLDESQN 139
                     S     F      I  D+               L I + + +     S  
Sbjct: 409 DSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTT 468

Query: 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLD 199
           T    LS GQ+KRL++    + +  ++  DE       DQ              +  F +
Sbjct: 469 T---ALSTGQQKRLALICAWLEDRPILLFDEWAA----DQDPAF----------KRFFYE 511

Query: 200 EPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGG 251
           E               LL  + +QG+TII   H      F++ DQ+  L+ G
Sbjct: 512 E---------------LLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAG 546

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 34/169 (20%)

Query: 48  PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN----- 102
           P   LK++       ++ A++G +GAGKS+L+ VLSG       G I  N  + N     
Sbjct: 17  PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP-TKGTITINNINYNKLDHK 75

Query: 103 INAFRRVSCYIQQDDRLQPLLTIEN---------------------------VMSL-LGL 134
           + A   +    Q+   +  L  +EN                           +M L +GL
Sbjct: 76  LAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGL 135

Query: 135 DESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL 183
               + + + LS   K+ L IA  L+ + +V+ +DEPT+S  N +   L
Sbjct: 136 KVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYL 184

Length = 510

>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 25/84 (29%), Positives = 44/84 (52%)

Query: 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQ 240
           +++ IA+ L N PR++  DEPT  ++  + +Q  +LL  ++Q   T I  I      L Q
Sbjct: 165 QKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQ 224

Query: 241 MFDQVYLLSGGQCLYQGATDQLVN 264
             D++ +L  GQ +    + +LV 
Sbjct: 225 WADKINVLYCGQTVETAPSKELVT 248

Length = 330

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 57/245 (23%), Positives = 111/245 (45%), Gaps = 31/245 (12%)

Query: 41  GLGFKQ--EPKDVLKNLCGRFPSNQLIAIMGPSGAGKS-SLLDVLSGYRSNGV---TGQI 94
            + F+Q    + V+ ++  +  + + +A++G SG+GKS + L +L    S  V   +G I
Sbjct: 12  SVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDI 71

Query: 95  LTNGHS------RNINAFR--RVSCYIQQD-DRLQPLLTIEN----VMSLLGLDESQNTR 141
             +G S      + +   R  +++   Q+    L PL T+E     V+SL      +  R
Sbjct: 72  RFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAAR 131

Query: 142 SSQLSGGQKKRLSIALEL--INNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLD 199
              L+          L+   I        D P   +   +++R+ IA+ L+  P ++  D
Sbjct: 132 GEILNC---------LDRVGIRQAAKRLTDYPHQLS-GGERQRVMIAMALLTRPELLIAD 181

Query: 200 EPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259
           EPTT LD    +Q ++LL+ + Q+    +  I    + + ++ D+V ++  G+C+ Q   
Sbjct: 182 EPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRA 241

Query: 260 DQLVN 264
             L +
Sbjct: 242 ATLFS 246

Length = 529

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 53/193 (27%), Positives = 98/193 (50%), Gaps = 29/193 (15%)

Query: 28  EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
           +I+F+++T+T       K+ P   L+N+  + P+ + +A++G SG+GKS++ ++L+  R 
Sbjct: 341 DIEFRNVTFTYPG----KEVP--ALRNINFKIPAGKTVALVGRSGSGKSTIANLLT--RF 392

Query: 88  NGVT-GQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNT----RS 142
             +  G+IL +GH  ++  +   S       R Q  L  +NV   L  D   N     R+
Sbjct: 393 YDIDEGEILLDGH--DLRDYTLASL------RNQVALVSQNVH--LFNDTIANNIAYART 442

Query: 143 SQLSGGQ---KKRLSIALELINNPRVMF---LDEPTTSNPNDQKKRLSIALELINNPRVM 196
            Q S  Q     R++ A++ IN         + E        Q++R++IA  L+ +  ++
Sbjct: 443 EQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPIL 502

Query: 197 FLDEPTTGLDSQS 209
            LDE T+ LD++S
Sbjct: 503 ILDEATSALDTES 515

Length = 582

>gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms]

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 33/205 (16%), Positives = 75/205 (36%), Gaps = 17/205 (8%)

Query: 355 LRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSIL 414
             I+  I   L+ G+    SG        + + L  I+   ++ S++ + +         
Sbjct: 54  APILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSFSSALFR 113

Query: 415 IKEHFN----------RWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRF 464
            +E             R + L    V   ++   +AG   L+   +     G P   +  
Sbjct: 114 EREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFL----LGVPFLGSLL 169

Query: 465 TMFNCTSLLVVFIAQSVGYMVGAVFN--VVNGTFVGPVLVVPMMMFSGFGVSINDIPKYM 522
            +     LL++    ++G ++       +   + VG +L++P+   SG    +  +P ++
Sbjct: 170 LLLLLLLLLLLATV-ALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWL 228

Query: 523 RWGSELSYLRYGLEGYVAAIYGLDR 547
           +  S ++ L Y ++       G  R
Sbjct: 229 QGISYINPLTYAIDALRYVYLGGWR 253

Length = 286

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 46.9 bits (111), Expect = 3e-05
 Identities = 24/53 (45%), Positives = 36/53 (67%), Gaps = 3/53 (5%)

Query: 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINN 192
           + +S+LSGGQK+R+SIA  +I NP+++ LDE T+S  N   K   +  + INN
Sbjct: 575 SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDN---KSEYLVQKTINN 624

Length = 1466

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 46.1 bits (110), Expect = 4e-05
 Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 35/153 (22%)

Query: 52  LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHSRNINAFRR-- 108
           L          +++A++G +GAGKS+++ VL+G Y  +   G IL  G     N  +   
Sbjct: 20  LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD--AGSILYLGKEVTFNGPKSSQ 77

Query: 109 ---VSCYIQQDDRLQPLLTI-ENV-------------------------MSLLGLDESQN 139
              +   I Q+  L P LTI EN+                         ++ L L  S +
Sbjct: 78  EAGIGI-IHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSD 136

Query: 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
               +LS G+++ + IA  L    +V+ +DEPT
Sbjct: 137 KLVGELSIGEQQMVEIAKVLSFESKVIIMDEPT 169

Length = 501

>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 38/140 (27%)

Query: 67  IMGPSGAGKSSLLDVLSGYRSNGVT-GQILTNGHSRNINAFR------------RVSCYI 113
           +MG SG+GKS+LL  ++G   N V+ G +L      +++               RVS   
Sbjct: 55  LMGLSGSGKSTLLRAVNGL--NPVSRGSVLVKDGDGSVDVANCDAATLRRLRTHRVSMVF 112

Query: 114 QQDDRLQPLLTI-ENV---------------------MSLLGLDESQNTRSSQLSGGQKK 151
           QQ   L P  T+ ENV                     + L+GL +  + +  +LSGG ++
Sbjct: 113 QQFA-LLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVGLAQWADRKPGELSGGMQQ 171

Query: 152 RLSIALELINNPRVMFLDEP 171
           R+ +A        ++ +DEP
Sbjct: 172 RVGLARAFATEAPILLMDEP 191

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 66/240 (27%), Positives = 96/240 (40%), Gaps = 70/240 (29%)

Query: 69  GPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-INAFRRVSCYIQQDDRLQPLLTIEN 127
           GPSG GKS+LL +++G   +  +G +       N +    R    + Q   L P L++  
Sbjct: 36  GPSGCGKSTLLRMIAGLE-DITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAE 94

Query: 128 VMS----LLGLDESQ-NTRSSQ-----------------LSGGQKKRLSIALELINNPRV 165
            MS    L G  + + N R +Q                 LSGGQ++R++I   L+  P V
Sbjct: 95  NMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV 154

Query: 166 MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGR 225
             LDEP  SN       L  AL      RV            Q   +  +L K   + GR
Sbjct: 155 FLLDEP-LSN-------LDAAL------RV------------QMRIEISRLHK---RLGR 185

Query: 226 TIICTIH-QPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPAD-FV 283
           T+I   H Q  A    + D++ +L  G              ++ V  P   YH PA+ FV
Sbjct: 186 TMIYVTHDQVEA--MTLADKIVVLDAG-------------RVAQVGKPLELYHYPANRFV 230

Length = 369

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.6 bits (105), Expect = 6e-05
 Identities = 43/161 (26%), Positives = 66/161 (40%), Gaps = 41/161 (25%)

Query: 52  LKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQILTNGHSRNIN 104
           L N+  +   N + A++GPSG GKS+ L       D++ G +   + G ++  G +   N
Sbjct: 23  LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK---IEGNVIYEGKNIYSN 79

Query: 105 AF------RRVSCYIQQD--------DRLQPLLTIENVMSLLGLDE-------------- 136
            F      R++    Q          D +     I        LDE              
Sbjct: 80  NFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNE 139

Query: 137 ---SQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
                NT +  LSGGQ++RL IA  L   P V+ +DEPT++
Sbjct: 140 VKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSA 180

Length = 254

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 26/135 (19%)

Query: 63  QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS----------RNINAF----RR 108
           +++ ++G +GAGK++LL  L G      +G+I+ +G            R   A     RR
Sbjct: 32  EIVTLIGANGAGKTTLLGTLCG-DPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRR 90

Query: 109 VSCYIQQD----------DRLQPLLTIENVMSLLG-LDESQNTRSSQLSGGQKKRLSIAL 157
           V   +  +          +R Q    I+ V  L   L E +  R+  +SGG+++ L+I  
Sbjct: 91  VFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGR 150

Query: 158 ELINNPRVMFLDEPT 172
            L++ PR++ LDEP+
Sbjct: 151 ALMSQPRLLLLDEPS 165

Length = 237

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 40/169 (23%), Positives = 75/169 (44%), Gaps = 34/169 (20%)

Query: 41  GLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH- 99
            +G+      +L N+     + +   I GPSG GKS+LL +++   S   +G +L  G  
Sbjct: 12  NVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP-TSGTLLFEGED 70

Query: 100 --SRNINAFRRVSCYIQQ--------------------DDRLQPLLTIENVMSLLGLDES 137
             +     +R+   Y  Q                    + +  P + ++++     L ++
Sbjct: 71  ISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERF-ALPDT 129

Query: 138 QNTRS-SQLSGGQKKRLSIALELINN----PRVMFLDEPTTSNPNDQKK 181
             T++ ++LSGG+K+R+S    LI N    P+V+ LDE T++     K 
Sbjct: 130 ILTKNIAELSGGEKQRIS----LIRNLQFMPKVLLLDEITSALDESNKH 174

Length = 225

>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 57/209 (27%), Positives = 86/209 (41%), Gaps = 46/209 (22%)

Query: 52  LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSC 111
           LKN+    P N+L+ I G SG+GKSSL               I   G  R + +   +S 
Sbjct: 11  LKNVDVDIPRNKLVVITGVSGSGKSSL-----------AFDTIYAEGQRRYVES---LSA 56

Query: 112 YIQQDDRLQPLLT-----IENVMSLLGLDE---SQNTRSSQLSGGQ---KKRLSIALELI 160
           Y +Q   L  +       IE +   + +D+   S+N RS+  +  +     RL  A   I
Sbjct: 57  YARQ--FLGQMDKPDVDSIEGLSPAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGI 114

Query: 161 NNPRVMFLDE------------PTTSNPNDQKKRL--SIALELINNPRVMF-LDEPTTGL 205
              R+ FL +            PT S    Q+ RL   I   L     V++ LDEP+ GL
Sbjct: 115 RE-RLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTG---VLYVLDEPSIGL 170

Query: 206 DSQSCSQCIKLLKMISQQGRTIICTIHQP 234
             +   + I+ LK +   G T++   H  
Sbjct: 171 HPRDNDRLIETLKRLRDLGNTVLVVEHDE 199

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 45.2 bits (108), Expect = 8e-05
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 22/170 (12%)

Query: 72  GAGKSSLLDVLSGYRSNGVTGQILTNGHSRNIN----AFRRVSCYIQQDDRLQ---PLLT 124
           GAG++ L   L G R    +G+IL +G    I     A +    Y+ +D + +     ++
Sbjct: 295 GAGRTELARALFGARPA-SSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS 353

Query: 125 IENVMSLLGLDES------QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPND 178
           I   ++L  L            +   L+    +RL I       P +  L     S  N 
Sbjct: 354 IAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-IGTL-----SGGNQ 407

Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTII 228
           QK  + +A  L  +P+V+ LDEPT G+D  + ++  +L++ ++ +G+ I+
Sbjct: 408 QK--VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAIL 455

Length = 500

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.2 bits (104), Expect = 8e-05
 Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 36/170 (21%)

Query: 39  STGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL------------------- 79
           +T L      K  L ++  +   N++ A++G SG GKS+ L                   
Sbjct: 5   TTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEI 64

Query: 80  --------DVLSGYRSNGVTGQ---ILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENV 128
                   DV++  ++ G+  Q   +       NI+   ++   I+  D  + L  + + 
Sbjct: 65  EGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEAL--VVDC 122

Query: 129 MSLLGLDESQNTRSSQ----LSGGQKKRLSIALELINNPRVMFLDEPTTS 174
           +  +GL E    +  Q    LSGGQ++RL IA  L   P+++ LDEPT++
Sbjct: 123 LQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSA 172

Length = 246

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 42/154 (27%)

Query: 60  PSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQILTNG---HSRNIN--AFR 107
               + A +GPSG GKS++L       +V+ G R   V G++L +G   +   ++  A R
Sbjct: 28  EPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGAR---VEGEVLLDGEDLYGPGVDPVAVR 84

Query: 108 RVSCYIQQDDRLQPLLTI-ENVMSLLGLDESQNTR------------------------- 141
           R    + Q     P ++I +NV++ L L+  +N +                         
Sbjct: 85  RTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDK 144

Query: 142 -SSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
               LSGGQ++RL IA  +   P V+ +DEP ++
Sbjct: 145 PGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSA 178

Length = 258

>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 33/142 (23%)

Query: 63  QLIAIMGPSGAGKS----SLLDVL-SGYRSNGVTGQILTNGHSRNINAFR-RVSCYIQQD 116
           +++A++G SG+GKS    + L +L +G R     G++L +G      A R R    I Q+
Sbjct: 30  RVLALVGGSGSGKSLTCAAALGILPAGVRQ--TAGRVLLDGKPVAPCALRGRKIATIMQN 87

Query: 117 DR--LQPLLTIEN--------------------VMSLLGLDESQNTRSS---QLSGGQKK 151
            R    PL T+                       +  +GL+ +         ++SGG  +
Sbjct: 88  PRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQ 147

Query: 152 RLSIALELINNPRVMFLDEPTT 173
           R+ IAL L+     +  DEPTT
Sbjct: 148 RMMIALALLCEAPFIIADEPTT 169

Length = 254

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 24/129 (18%)

Query: 61  SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQ 120
             ++I I+GP G+GK++L   L+        G I  +G                      
Sbjct: 1   PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGE--------------------- 39

Query: 121 PLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQK 180
               I   +    L      + +  SG  + RL++AL     P V+ LDE T+    +Q+
Sbjct: 40  ---DILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQE 96

Query: 181 KRLSIALEL 189
             L +  EL
Sbjct: 97  ALLLLLEEL 105

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 33/152 (21%)

Query: 52  LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF----- 106
           L N+  R P+ QL  I+G  G GKSSLL  + G     + G++  +  + +  +F     
Sbjct: 17  LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILG-EMQTLEGKVHWSNKNESEPSFEATRS 75

Query: 107 --RRVSCYIQQDDRLQPLLTIENV-----------------------MSLLGL-DESQ-N 139
             R    Y  Q   L      EN+                       + LL   D+++  
Sbjct: 76  RNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIG 135

Query: 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
            R   LSGGQ++R+ +A  L  N  ++FLD+P
Sbjct: 136 ERGINLSGGQRQRICVARALYQNTNIVFLDDP 167

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 49/203 (24%), Positives = 84/203 (41%), Gaps = 37/203 (18%)

Query: 69  GPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQ-----QDDRLQPLL 123
           G  GAG++ L + L G R     G+I+ NG    INA        +      +DR    L
Sbjct: 296 GVVGAGRTELAETLYGLRPA-RGGRIMLNGK--EINALSTAQRLARGLVYLPEDRQSSGL 352

Query: 124 TIE-----NVMSLLGLDESQNTRSSQLSGGQKKR--------LSIALELINNP-RVMFLD 169
            ++     NV +L       N R   +   ++          L+I         R     
Sbjct: 353 YLDAPLAWNVCALT-----HNRRGFWIKPARENAVLERYRRALNIKFNHAEQAAR----- 402

Query: 170 EPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIIC 229
             T S  N QK  ++  LE   +P+++ +DEPT G+D  + +   +L++ I+ Q   ++ 
Sbjct: 403 --TLSGGNQQKVLIAKCLEA--SPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVL- 457

Query: 230 TIHQPSATLFQMFDQVYLLSGGQ 252
            I      + QM D+V ++  G+
Sbjct: 458 FISSDLEEIEQMADRVLVMHQGE 480

Length = 510

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 39/159 (24%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-----YRSNGVT--GQILTNGH-- 99
           + +L NL  +    +   I+GP+GAGKS+LL +++G     Y SN +T  G+   +G   
Sbjct: 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGY-SNDLTLFGRRRGSGETI 331

Query: 100 ----------SRNINAFRRVSC----------------YIQQDDRLQPLLTIENVMSLLG 133
                     S +++   RVS                 Y    DR Q L   +  + +LG
Sbjct: 332 WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKL--AQQWLDILG 389

Query: 134 LDESQNTRSSQ-LSGGQKKRLSIALELINNPRVMFLDEP 171
           +D+         LS GQ++   I   L+ +P ++ LDEP
Sbjct: 390 IDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEP 428

Length = 490

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 46/159 (28%), Positives = 68/159 (42%), Gaps = 37/159 (23%)

Query: 52  LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY----RSNGVTGQILTNGH-----SRN 102
           LKN+      N++ AI+GPSG GKS+ +  L+       S   TG+IL         S +
Sbjct: 40  LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99

Query: 103 INAFR-RVSCYIQQDDRLQPLLTIENVM--------------------SLLG------LD 135
           +   R  V    Q+ +   P    +NV                     SL G      L 
Sbjct: 100 VEELRTNVGMVFQKPNPF-PKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK 158

Query: 136 ESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
           +  +  +  LSGGQ++RL IA  L   P V+ +DEPT++
Sbjct: 159 DRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSA 197

Length = 271

>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 45/184 (24%), Positives = 79/184 (42%), Gaps = 56/184 (30%)

Query: 49  KDVLKNLCGRFP----------SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT-GQILTN 97
           + V K+  G+              + I ++GPSG GKS+LL +++G     +T G+I   
Sbjct: 7   QAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIG 64

Query: 98  GHSRNINAFRRVSCYIQQDDR----------LQPLLTIENVMS----------------- 130
           G  R +N        ++  DR          L P +++   M+                 
Sbjct: 65  G--RVVNE-------LEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERV 115

Query: 131 -----LLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI 185
                +L L+   + +  +LSGGQ++R+++   ++  P V   DEP  SN  D K R+ +
Sbjct: 116 AEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEP-LSNL-DAKLRVQM 173

Query: 186 ALEL 189
            LE+
Sbjct: 174 RLEI 177

Length = 356

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 12/134 (8%)

Query: 65  IAIMGPSGAGKSSLLDVLSGYRSNGVTGQI-LTNG------HSRNINAFRRVSCYIQQDD 117
           I ++G +GAGKS+L+ +L+G     V+G+I L  G          +   R     +Q   
Sbjct: 341 IGLLGRNGAGKSTLIKLLAG-ELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLA 399

Query: 118 RLQPLLTIENVMSLLGLDESQNTR----SSQLSGGQKKRLSIALELINNPRVMFLDEPTT 173
           RL P    + +   LG    Q  +    + + SGG+K RL +AL +   P ++ LDEPT 
Sbjct: 400 RLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTN 459

Query: 174 SNPNDQKKRLSIAL 187
               D ++ L+ AL
Sbjct: 460 HLDLDMRQALTEAL 473

Length = 638

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 33/165 (20%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR 108
           + VL ++       +++ ++GP+GAGKS+L+ V+ G  +    G I  NG  R I     
Sbjct: 17  RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD-EGVIKRNGKLR-IG---- 70

Query: 109 VSCYIQQDDRLQPL--LTIENVMSLLG----------LDESQ-----NTRSSQLSGGQKK 151
              Y+ Q   L     LT+   + L            L   Q     +    +LSGG+ +
Sbjct: 71  ---YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQ 127

Query: 152 RLSIALELINNPRVMFLDEPTTS-NPNDQKKRLSIAL-ELINNPR 194
           R+ +A  L+N P+++ LDEPT   + N Q     +AL +LI+  R
Sbjct: 128 RVLLARALLNRPQLLVLDEPTQGVDVNGQ-----VALYDLIDQLR 167

Length = 251

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 44.0 bits (105), Expect = 2e-04
 Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 54/177 (30%)

Query: 63  QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTN--GHSRN------INAFR------- 107
           ++  I+GP+G GK++ + +LSG        +++ N   +         +  FR       
Sbjct: 100 KVTGILGPNGIGKTTAVKILSG--------ELIPNLGDYEEEPSWDEVLKRFRGTELQNY 151

Query: 108 ---------RVSCYIQQDDRLQP---------LLT-------IENVMSLLGLDESQNTRS 142
                    +V    Q  D + P         LL        ++ V+  LGL+   +   
Sbjct: 152 FKKLYNGEIKVVHKPQYVDLI-PKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDI 210

Query: 143 SQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL---ELINNPRVM 196
           S+LSGG+ +R++IA  L+ +    F DEPT+    D ++RL++A    EL     V+
Sbjct: 211 SELSGGELQRVAIAAALLRDADFYFFDEPTSY--LDIRQRLNVARLIRELAEGKYVL 265

Length = 590

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 20/123 (16%)

Query: 65  IAIMGPSGAGKSSLLDVLSG---------YRSNGVTGQILTNGHSRNINAFRRVSCYIQQ 115
           IA++GP+G GKS++L ++SG         +RS  V   + +  H   ++       Y+ +
Sbjct: 538 IAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMR 597

Query: 116 ------DDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLD 169
                 + +L+  L    V   L L +   T    LSGGQK R++ A      P ++ LD
Sbjct: 598 CFPGVPEQKLRAHLGSFGVTGNLAL-QPMYT----LSGGQKSRVAFAKITFKKPHILLLD 652

Query: 170 EPT 172
           EP+
Sbjct: 653 EPS 655

Length = 718

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 43.7 bits (104), Expect = 3e-04
 Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 44/228 (19%)

Query: 23  TADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVL 82
           T   + ++ +DL+     G+         +K++     + +++ I G +G G+S L++ +
Sbjct: 252 TPGEVVLEVEDLSVKDRRGV-------TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAI 304

Query: 83  SGYRSNGVTGQILTNGHS----RNINAFRR--VSCYIQQDDRLQ-----PLLTIENVMSL 131
           SG R    +G+IL NG       +    RR  ++ Y+  +DR        L   EN+  +
Sbjct: 305 SGLRK-PASGRILLNGKDVLGRLSPRERRRLGLA-YVP-EDRHGHGLVLDLSLAENL--V 359

Query: 132 LGLDESQNTRSSQLSGGQKKRLSI---ALELINNPRVMFLDEPTTSNPNDQKKRLS---- 184
           LG    ++ +     GG   R +I   A ELI    V         +P+   + LS    
Sbjct: 360 LG----RHDKKPFSRGGFLDRRAIRKFARELIEEFDVR------APSPDAPARSLSGGNQ 409

Query: 185 ----IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTII 228
               +A EL   P ++   +PT GLD  +     + L  +   G+ ++
Sbjct: 410 QKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVL 457

Length = 501

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 48/217 (22%), Positives = 96/217 (44%), Gaps = 20/217 (9%)

Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NINAFR 107
           VLK +     + ++ A++G +GAGKS+L+ +++G      +G +   G+           
Sbjct: 26  VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD-SGTLEIGGNPCARLTPAKAH 84

Query: 108 RVSCY-IQQDDRLQPLLTI-ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV 165
           ++  Y + Q+  L P L++ EN+  L GL + Q +          +++   L  +     
Sbjct: 85  QLGIYLVPQEPLLFPNLSVKENI--LFGLPKRQAS---------MQKMKQLLAALGCQ-- 131

Query: 166 MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGR 225
           + LD    S     ++ + I   L+ + R++ LDEPT  L      +    ++ +  QG 
Sbjct: 132 LDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGV 191

Query: 226 TIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
            I+   H+    + Q+ D++ ++  G     G T  L
Sbjct: 192 GIVFISHKLP-EIRQLADRISVMRDGTIALSGKTADL 227

Length = 510

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 43.7 bits (103), Expect = 3e-04
 Identities = 63/240 (26%), Positives = 102/240 (42%), Gaps = 39/240 (16%)

Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVS 110
           VLKN+  +    QL+A+ G +G+GKSSLL ++ G       G+I  +G         R+S
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS-EGKIKHSG---------RIS 490

Query: 111 CYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDE 170
            +  Q   + P    +N++  L  DE + T  S +   Q   L   + L        L E
Sbjct: 491 -FSPQTSWIMPGTIKDNIIFGLSYDEYRYT--SVIKACQ---LEEDIALFPEKDKTVLGE 544

Query: 171 PTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDS-------QSCSQCIKLLKMISQQ 223
              +    Q+ R+S+A  +  +  +  LD P T LD        +SC     L K++S +
Sbjct: 545 GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESC-----LCKLMSNK 599

Query: 224 GRTIICTI--HQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNY---LSSVNLPCPKYHN 278
            R ++ +   H   A      D++ LL  G C + G   +L       SS+ L    + N
Sbjct: 600 TRILVTSKLEHLKKA------DKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLEAFDN 653

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 40/168 (23%)

Query: 43  GFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL---DVLSGYRSN-GVTGQILTNG 98
           G KQ   D+  ++  R    ++ A +GPSG GKS+ L   + ++ +  N  V G++  +G
Sbjct: 16  GSKQILFDINLDIYKR----EVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDG 71

Query: 99  ---HSRNINAF---RRVSCYIQQDD--------------RLQPLL--------TIENVMS 130
              +S + N      +V    Q+ +              +L  L          +E  ++
Sbjct: 72  IDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLT 131

Query: 131 LLGLDESQNTR----SSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
            +GL E    R    + +LSGGQ++RL IA  +   P ++ +DEP ++
Sbjct: 132 SVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSA 179

Length = 251

>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 51/207 (24%), Positives = 83/207 (40%), Gaps = 51/207 (24%)

Query: 62  NQLIAIMGPSGAGKSSLL-------DVLSGYRSNG---VTGQILTNGHSRNINAFRRVSC 111
           N++   +GPSG GKS++L       D++ G+R  G     GQ +       +   R +  
Sbjct: 34  NEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGM 93

Query: 112 YIQQDDRLQPLLTIENVMSLLGL---------------------DESQNTRSSQ---LSG 147
             QQ +    +   +NV   L L                     DE ++        LSG
Sbjct: 94  VFQQPNPFS-MSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSG 152

Query: 148 GQKKRLSIALELINNPRVMFLDEPTTS-NPNDQKKRLSIALELINNPRVMFLDEPTTGLD 206
           GQ++RL IA  +   P V+ LDEP ++ +P   ++   + +EL          + T  L 
Sbjct: 153 GQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK--------DYTIALV 204

Query: 207 SQSCSQCIKLLKM-------ISQQGRT 226
           + +  Q I++          ISQ  RT
Sbjct: 205 THNMQQAIRVADTTAFFSVDISQGTRT 231

Length = 261

>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 52/197 (26%), Positives = 91/197 (46%), Gaps = 26/197 (13%)

Query: 63  QLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGH---SRNINAFRRVSCYIQQDDR 118
           +L+ ++G +G+GKS+L  +L+G Y+    +G+IL +G    +  +  +R++   +  D  
Sbjct: 350 ELVFLIGGNGSGKSTLAMLLTGLYQPQ--SGEILLDGKPVSAEQLEDYRKLFSAVFSDYH 407

Query: 119 LQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALEL-INNPRVMFLDEPTTSNPN 177
           L           LLG +      S QL     +RL +A +  +N+ R   L   T     
Sbjct: 408 LFD--------QLLGPE---GKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLST----- 451

Query: 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIK-LLKMISQQGRTIICTIHQPSA 236
            QKKRL++ L L+    ++ LDE     D     +  + LL ++ +QG+TI    H    
Sbjct: 452 GQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH- 510

Query: 237 TLFQMFDQVYLLSGGQC 253
             F   D++  +  GQ 
Sbjct: 511 -YFIHADRLLEMRNGQL 526

Length = 546

>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 45/163 (27%), Positives = 64/163 (39%), Gaps = 42/163 (25%)

Query: 47  EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT-GQILTNGH------ 99
           E K +L+ L       ++ AIMGP+G+GKS+L   L+G     VT G +   G       
Sbjct: 12  EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELS 71

Query: 100 ----------------------------SRNINAFRRVSCYIQQD--DRLQPLLTIENVM 129
                                          +NA R    Y  Q+  DR      +E  +
Sbjct: 72  PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRS---YRGQEPLDRFDFQDLMEEKI 128

Query: 130 SLLGLDESQNTRSSQL--SGGQKKRLSIALELINNPRVMFLDE 170
           +LL + E   TRS  +  SGG+KKR  I    +  P +  LDE
Sbjct: 129 ALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDE 171

Length = 248

>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional

 Score = 42.5 bits (100), Expect = 6e-04
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 168 LDEPTTSNPNDQKKRLSIALELIN---NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQG 224
           L  P +S    + +RL +A EL+     P +  LDEPTTGL +      I +L+ ++ QG
Sbjct: 803 LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQG 862

Query: 225 RTIICTIH 232
            T++   H
Sbjct: 863 HTVVIIEH 870

Length = 1809

>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 38/130 (29%)

Query: 57  GRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQD 116
           G     ++I I+GP+G GK++ + +L+G        Q++ NG                 D
Sbjct: 20  GVVKEGEVIGIVGPNGTGKTTAVKILAG--------QLIPNG-----------------D 54

Query: 117 DRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNP 176
           +     +T                +   LSGG+ +R++IA  L+ N      DEP  S  
Sbjct: 55  NDEWDGITP-----------VYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEP--SAY 101

Query: 177 NDQKKRLSIA 186
            D ++RL+ A
Sbjct: 102 LDIEQRLNAA 111

The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177

>gnl|CDD|222036 pfam13304, AAA_21, AAA domain

 Score = 41.3 bits (96), Expect = 7e-04
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query: 183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS 235
           L   L  +    ++ +DEP  GL  +   + ++LLK +S++G  +I T H P 
Sbjct: 201 LLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSPL 253

Length = 256

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 33/155 (21%)

Query: 63  QLIAIMGPSGAGKSSLLDVLSG--------YRSNG--------VTGQILTNGHSRNINAF 106
           Q++ ++GP+G GKS+ L +L+G        +              G  L N  ++ +   
Sbjct: 27  QVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGD 86

Query: 107 RRVSCYIQQDDRL--------QPLLT-------IENVMSLLGLDESQNTRSSQLSGGQKK 151
            +V    Q  D +          LL        ++ ++  L L    +    QLSGG+ +
Sbjct: 87  VKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQ 146

Query: 152 RLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIA 186
           R++IA  L  +    F DEP  S+  D K+RL+ A
Sbjct: 147 RVAIAAALARDADFYFFDEP--SSYLDIKQRLNAA 179

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 41.9 bits (98), Expect = 0.001
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 24/134 (17%)

Query: 60  PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRL 119
           P   L+A++G  G GKSSLL  L     + V G +   G      A+     +IQ D   
Sbjct: 662 PEGALVAVVGQVGCGKSSLLSALLA-EMDKVEGHVHMKGSV----AYVPQQAWIQNDSLR 716

Query: 120 QPLL------------TIE------NVMSLLGLDESQ-NTRSSQLSGGQKKRLSIALELI 160
           + +L             +E      ++  L   D ++   +   LSGGQK+R+S+A  + 
Sbjct: 717 ENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVY 776

Query: 161 NNPRVMFLDEPTTS 174
           +N  +   D+P ++
Sbjct: 777 SNADIYLFDDPLSA 790

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 9/51 (17%)

Query: 34 LTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG 84
          L  +  TG     E  + LK L       +   + G SG GKS+LL+ L  
Sbjct: 16 LVVSAKTG-----EGIEELKPLL----KGKTSVLAGQSGVGKSTLLNALLP 57

Length = 161

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 41.1 bits (97), Expect = 0.002
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 48/194 (24%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NINA 105
           K++LK++   F     I ++G +GAGKS+LL +++G            NG +R    I  
Sbjct: 18  KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE-------FNGEARPAPGIKV 70

Query: 106 FRRVSCYIQQDDRLQPLLTI-ENVMSLLG-----LDE---------SQNTRSSQLSGGQK 150
                 Y+ Q+ +L P  T+ ENV   +      LD            +     L   Q 
Sbjct: 71  -----GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQA 125

Query: 151 K---------------RLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRV 195
           +               +L IA++ +  P     D   T     +++R+++   L++ P +
Sbjct: 126 ELQEIIDAADAWDLDRKLEIAMDALRCPP---WDADVTKLSGGERRRVALCRLLLSKPDM 182

Query: 196 MFLDEPTTGLDSQS 209
           + LDEPT  LD++S
Sbjct: 183 LLLDEPTNHLDAES 196

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 6/55 (10%)

Query: 128 VMSLLGLDESQ-----NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPT-TSNP 176
            + ++G DE +     +    +LS G++ R+++A  LI  PR++ LDEPT T +P
Sbjct: 406 TLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDP 460

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 21/52 (40%), Positives = 30/52 (57%)

Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICT 230
           Q++RL IA  L   P+++ LDEPT+ LD  S     +LLK +S     I+ T
Sbjct: 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVT 198

Length = 246

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 50/215 (23%), Positives = 103/215 (47%), Gaps = 28/215 (13%)

Query: 63  QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG------HSRNINAFRRVS-CYIQQ 115
           ++  IMG SG+GKS+++ +L+        GQ+L +G          +   RR     + Q
Sbjct: 55  EIFVIMGLSGSGKSTMVRLLNRL-IEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQ 113

Query: 116 DDRLQPLLTIENVMSLLGLDESQNTRSSQLSG-GQKKRLSIALELINNPRVMFLDEPTTS 174
              L P +T+        LD +      +L+G   ++R   AL+ +   R + L+    S
Sbjct: 114 SFALMPHMTV--------LDNT--AFGMELAGINAEERREKALDAL---RQVGLENYAHS 160

Query: 175 NPND----QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCI-KLLKMISQQGRTIIC 229
            P++     ++R+ +A  L  NP ++ +DE  + LD    ++   +L+K+ ++  RTI+ 
Sbjct: 161 YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVF 220

Query: 230 TIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
             H     + ++ D++ ++  G+ +  G  D+++N
Sbjct: 221 ISHDLDEAM-RIGDRIAIMQNGEVVQVGTPDEILN 254

Length = 400

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 24/147 (16%)

Query: 44  FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY-----------RSNGVTG 92
           F+ EPK +L+++    P  +L  ++G +G+GKS+LL  L              RS     
Sbjct: 668 FELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVP 727

Query: 93  Q---ILTNGHSRNINAFRRVSCYIQQDDRLQPLL---TIENVMSLL--GLDESQNTRSSQ 144
           Q   I+      NI  F       +   RL   +    +E  ++ L  GL+     +   
Sbjct: 728 QQAWIMNATVRGNILFFDE-----EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVN 782

Query: 145 LSGGQKKRLSIALELINNPRVMFLDEP 171
           LSGGQK R+S+A  +  N  V  LD+P
Sbjct: 783 LSGGQKARVSLARAVYANRDVYLLDDP 809

Length = 1560

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 59/267 (22%), Positives = 119/267 (44%), Gaps = 52/267 (19%)

Query: 66  AIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHSRNINAFRR-----VSCYIQQDDRL 119
           A+MG +GAGKS+LL  L G Y+ +  +G IL  G   +  + +      +S   Q+ +  
Sbjct: 28  ALMGENGAGKSTLLKCLFGIYQKD--SGSILFQGKEIDFKSSKEALENGISMVHQELN-- 83

Query: 120 QPLLTIENVMSLLGL----------DESQNTRSSQLSGGQKKRLSIALELINNPRVMFLD 169
             L+   +VM  + L          D+ +  R +       K +   L++  +PR     
Sbjct: 84  --LVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDT-------KAIFDELDIDIDPRAKVAT 134

Query: 170 EPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIIC 229
              +     Q + + IA     N +++ +DEPT+ L  +  +    +++ + ++G  I+ 
Sbjct: 135 LSVS-----QMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVY 189

Query: 230 TIHQPSATLFQMFDQVYLLSGGQCL----YQGAT-DQLVNYLSSVNL----PCPKYHNPA 280
             H+    +FQ+ D++ +L  GQ +      G T D+++  +   +L    P  K + P 
Sbjct: 190 ISHK-MEEIFQLCDEITILRDGQWIATQPLAGLTMDKIIAMMVGRSLTQRFP-DKENKPG 247

Query: 281 DFVIELASGEYGVDNINAMVEQAQNDV 307
           + ++E       V N+ ++ + +  DV
Sbjct: 248 EVILE-------VRNLTSLRQPSIRDV 267

Length = 491

>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 54/214 (25%), Positives = 91/214 (42%), Gaps = 40/214 (18%)

Query: 30  KFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG 89
           K KDL +    G     E    L N+    P  +++ I+G +G+GKS+L        SN 
Sbjct: 23  KLKDLFFRSKDG-----EYHYALNNISFEVPEGEIVGIIGLNGSGKSTL--------SNL 69

Query: 90  VTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLT-IENVMSLLGLDESQNTRSSQLSGG 148
           + G  + N  + +I      +  I     L   LT IEN+  L GL          + G 
Sbjct: 70  IAGVTMPNKGTVDIKG---SAALIAISSGLNGQLTGIENI-ELKGL----------MMGL 115

Query: 149 QKKRLSIALELINNPRVM-------FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP 201
            K+++    E+I  P ++       F+ +P  +  +  K RL  A+ +  NP ++ +DE 
Sbjct: 116 TKEKIK---EII--PEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEA 170

Query: 202 TTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS 235
            +  D     +C+  +    +QG+TI    H  S
Sbjct: 171 LSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS 204

Length = 549

>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 48/196 (24%), Positives = 88/196 (44%), Gaps = 37/196 (18%)

Query: 1   MAQVEFELSNSLSSSESGTSLETADRI----EIKFKDLTYTVSTGLGFKQEPKDV-LKNL 55
            AQV F   N L+ +                 ++ +++T+      GF   P ++ +K  
Sbjct: 291 SAQVAFNKLNKLALAPYKAEFPRPQAFPDWQTLELRNVTFAYQDN-GFSVGPINLTIKR- 348

Query: 56  CGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNG---HSRNINAFRRVSC 111
                  +L+ ++G +G+GKS+L  +L+G Y+    +G+IL +G    +     +R++  
Sbjct: 349 ------GELLFLIGGNGSGKSTLAMLLTGLYQP--QSGEILLDGKPVTAEQPEDYRKLFS 400

Query: 112 YIQQD----DRLQ--------PLLTIENVMSLLGLDES---QNTRSS--QLSGGQKKRLS 154
            +  D    D+L         P L +E  +  L +      ++ R S  +LS GQKKRL+
Sbjct: 401 AVFTDFHLFDQLLGPEGKPANPAL-VEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLA 459

Query: 155 IALELINNPRVMFLDE 170
           + L L     ++ LDE
Sbjct: 460 LLLALAEERDILLLDE 475

Length = 547

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 52/172 (30%), Positives = 79/172 (45%), Gaps = 37/172 (21%)

Query: 65  IAIMGPSGAGKS----SLLDVLSGYRSNGVTGQILTNGH------SRNINAFRRVSCYIQ 114
           ++++G SG+GKS    +LL ++    S G  G+I+ NG          + A RR   +I 
Sbjct: 353 LSLVGESGSGKSTTGRALLRLVE---SQG--GEIIFNGQRIDTLSPGKLQALRRDIQFIF 407

Query: 115 QDD--RLQPLLTI-ENVMSLLGLDESQNTRSSQLSGGQ--KKRLSIALELINNPRVMFLD 169
           QD    L P  T+ +++M  L        R   L  G+    R++  LE     RV  L 
Sbjct: 408 QDPYASLDPRQTVGDSIMEPL--------RVHGLLPGKAAAARVAWLLE-----RVGLLP 454

Query: 170 EPTTSNPND----QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL 217
           E     P++    Q++R+ IA  L  NP+V+  DE  + LD     Q I LL
Sbjct: 455 EHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLL 506

Length = 623

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 40.4 bits (94), Expect = 0.003
 Identities = 17/37 (45%), Positives = 28/37 (75%)

Query: 145  LSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKK 181
            LSGGQK+R++IA  L+  P+++ LDE T+S  ++ +K
Sbjct: 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEK 1395

Length = 1466

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 27/128 (21%), Positives = 58/128 (45%), Gaps = 16/128 (12%)

Query: 57  GRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQD 116
           G    +++I I+GP+G GK++ + +L+G       G I     +    +++        +
Sbjct: 20  GSISESEVIGILGPNGIGKTTFIKMLAG-VLKPDEGDIEIELDTV---SYKPQYIKADYE 75

Query: 117 DRLQPLLT------------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPR 164
             ++ LL+               +   L +++  +    +LSGG+ +R++IA  L  +  
Sbjct: 76  GTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDAD 135

Query: 165 VMFLDEPT 172
           +  LDEP+
Sbjct: 136 IYLLDEPS 143

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA

 Score = 39.5 bits (93), Expect = 0.003
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLL-DVL 82
          LKN+    P   L  + G SG+GKSSL+ D L
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTL 42

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 39.7 bits (92), Expect = 0.003
 Identities = 48/230 (20%), Positives = 102/230 (44%), Gaps = 21/230 (9%)

Query: 42  LGFKQEPKDVLKNLCG---RFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN-----GVTGQ 93
           L FK E +  +  L G        + ++I+G +G+GKS+   ++ G          + G+
Sbjct: 10  LVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGE 69

Query: 94  ILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL 153
           +LT  +  N+   R++    Q  D      T+E+ ++  G++     R   +     KR+
Sbjct: 70  LLTAENVWNLR--RKIGMVFQNPDNQFVGATVEDDVAF-GMENQGIPREEMI-----KRV 121

Query: 154 SIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQC 213
             AL  +N   + F           QK+R+++A  +   P ++ LDE T+ LD     + 
Sbjct: 122 DEALLAVN--MLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEI 179

Query: 214 IKLLKMISQQGR-TIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
           ++++  I ++ + T++   H          D++ ++  G+ + + A  +L
Sbjct: 180 MRVIHEIKEKYQLTVLSITHDLDEAASS--DRILVMKAGEIIKEAAPSEL 227

Length = 277

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 40.0 bits (93), Expect = 0.004
 Identities = 16/31 (51%), Positives = 25/31 (80%)

Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQS 209
           QK+R+SIA  +I NP+++ LDE T+ LD++S
Sbjct: 584 QKQRISIARAIIRNPKILILDEATSSLDNKS 614

Length = 1466

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 48/187 (25%), Positives = 79/187 (42%), Gaps = 33/187 (17%)

Query: 61  SNQLIAIMGPSGAGKSSLLDVLSGY--RSNGVTGQILTNGHSRNIN----AFRRVSCYIQ 114
             +++ + G  GAG++ L+ VL G   R+   +G +  +GH                YI 
Sbjct: 277 KGEILGVSGLMGAGRTELMKVLYGALPRT---SGYVTLDGHEVVTRSPQDGLANGIVYIS 333

Query: 115 QD---DRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLS--------IALELINNP 163
           +D   D L   ++++  MSL  L            GG  K           I L  I  P
Sbjct: 334 EDRKRDGLVLGMSVKENMSLTALRYFSRA------GGSLKHADEQQAVSDFIRLFNIKTP 387

Query: 164 RVMFLDEPT--TSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMIS 221
               +++     S  N QK  ++IA  L+  P+V+ LDEPT G+D  +  +  +L+    
Sbjct: 388 S---MEQAIGLLSGGNQQK--VAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFK 442

Query: 222 QQGRTII 228
            +G +II
Sbjct: 443 AEGLSII 449

Length = 501

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 125 IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS 184
           +   + L+G+ + +    ++LSGGQK+R++IA  +   P+++ LDE T+    D + R  
Sbjct: 121 VNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSM--LDPEGR-- 176

Query: 185 IALELIN 191
             LELI 
Sbjct: 177 --LELIK 181

Length = 279

>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]

 Score = 39.9 bits (94), Expect = 0.004
 Identities = 15/27 (55%), Positives = 19/27 (70%)

Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSL 78
          LKN+    P N+L+ I G SG+GKSSL
Sbjct: 16 LKNIDLEIPRNKLVVITGLSGSGKSSL 42

Length = 935

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	606
KOG0061|consensus	613		100.0
PLN03211	659	ABC transporter G-25; Provisional	100.0
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
KOG0065|consensus	1391		100.0
KOG0065|consensus	1391		100.0
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	100.0
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	100.0
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	100.0
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	100.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	100.0
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	100.0
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	100.0
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	100.0
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	100.0
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	100.0
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	100.0
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	100.0
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	100.0
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	100.0
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03234	226	ABCG_White The White subfamily represents ABC tran	100.0
COG0410	237	LivF ABC-type branched-chain amino acid transport	100.0
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	100.0
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	100.0
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	100.0
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	100.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	100.0
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	100.0
COG4559	259	ABC-type hemin transport system, ATPase component	100.0
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	100.0
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10908	222	cell division protein FtsE; Provisional	100.0
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	100.0
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	100.0
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	100.0
COG4152	300	ABC-type uncharacterized transport system, ATPase	100.0
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	100.0
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	100.0
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	100.0
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	100.0
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	100.0
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	100.0
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	100.0
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	100.0
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	100.0
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	100.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	100.0
PRK09984	262	phosphonate/organophosphate ester transporter subu	100.0
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	100.0
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	100.0
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	100.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	100.0
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	100.0
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	100.0
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	100.0
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	100.0
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	100.0
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	100.0
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	100.0
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	100.0
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	100.0
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	100.0
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	100.0
COG4181	228	Predicted ABC-type transport system involved in ly	100.0
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	100.0
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
KOG0058|consensus	716		100.0
cd03299	235	ABC_ModC_like Archeal protein closely related to M	100.0
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	100.0
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	100.0
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	100.0
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	100.0
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	100.0
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	100.0
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	100.0
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	100.0
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	100.0
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	100.0
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	100.0
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	100.0
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	100.0
KOG0055|consensus	1228		100.0
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	100.0
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	100.0
COG4988	559	CydD ABC-type transport system involved in cytochr	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	100.0
cd03246	173	ABCC_Protease_Secretion This family represents the	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	100.0
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	100.0
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	100.0
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	100.0
KOG0057|consensus	591		100.0
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	100.0
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	100.0
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	100.0
PRK03695	248	vitamin B12-transporter ATPase; Provisional	100.0
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	100.0
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	100.0
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	100.0
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	100.0
cd03215	182	ABC_Carb_Monos_II This family represents domain II	100.0
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	100.0
COG4987	573	CydC ABC-type transport system involved in cytochr	100.0
COG4598	256	HisP ABC-type histidine transport system, ATPase c	100.0
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	100.0
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	100.0
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	100.0
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	100.0
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	100.0
cd03216	163	ABC_Carb_Monos_I This family represents the domain	100.0
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	100.0
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	100.0
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	100.0
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	100.0
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	100.0
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	100.0
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	100.0
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	100.0
PRK13546	264	teichoic acids export protein ATP-binding subunit;	100.0
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	100.0
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	100.0
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	100.0
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
COG4525	259	TauB ABC-type taurine transport system, ATPase com	100.0
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	100.0
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	100.0
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	100.0
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	100.0
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	100.0
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	100.0
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	100.0
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	100.0
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
PRK10535	648	macrolide transporter ATP-binding /permease protei	100.0
PRK10522	547	multidrug transporter membrane component/ATP-bindi	100.0
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
KOG0055|consensus	1228		100.0
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	100.0
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
COG4586	325	ABC-type uncharacterized transport system, ATPase	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	100.0
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	100.0
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	100.0
COG3845	501	ABC-type uncharacterized transport systems, ATPase	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	100.0
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	100.0
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	100.0
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
KOG0056|consensus	790		100.0
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	100.0
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
COG4619	223	ABC-type uncharacterized transport system, ATPase	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
COG4674	249	Uncharacterized ABC-type transport system, ATPase	100.0
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.98
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.98
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.98
PLN03232	1495	ABC transporter C family member; Provisional	99.98
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.98
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.97
PLN03130	1622	ABC transporter C family member; Provisional	99.97
KOG0059|consensus	885		99.97
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.97
PRK13409	590	putative ATPase RIL; Provisional	99.97
COG0488	530	Uup ATPase components of ABC transporters with dup	99.97
PLN03073	718	ABC transporter F family; Provisional	99.97
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.97
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.97
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.97
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.97
PTZ00243	1560	ABC transporter; Provisional	99.96
KOG0054|consensus	1381		99.96
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.96
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.96
KOG0054|consensus	1381		99.95
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.95
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.95
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.95
COG0488	530	Uup ATPase components of ABC transporters with dup	99.95
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.95
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.94
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.94
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.94
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.93
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.93
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.92
KOG0062|consensus	582		99.91
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.91
COG4178	604	ABC-type uncharacterized transport system, permeas	99.91
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.9
COG4172	534	ABC-type uncharacterized transport system, duplica	99.9
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.9
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.9
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.89
KOG0927|consensus	614		99.88
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.88
KOG0927|consensus	614		99.88
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.88
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.87
PF01061	210	ABC2_membrane: ABC-2 type transporter; InterPro: I	99.87
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.86
KOG2355|consensus	291		99.86
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.86
KOG0060|consensus	659		99.84
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.81
KOG0066|consensus	807		99.81
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.79
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.79
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.78
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.77
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.77
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.77
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.76
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.76
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.74
KOG0064|consensus	728		99.73
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.7
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.68
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.68
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.67
KOG0066|consensus	807		99.66
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.63
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.61
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.56
PRK00064	361	recF recombination protein F; Reviewed	99.54
KOG0063|consensus	592		99.53
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.49
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.48
TIGR01247	236	drrB daunorubicin resistance ABC transporter membr	99.45
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.44
TIGR03062	208	pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa	99.43
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	99.43
PRK14079	349	recF recombination protein F; Provisional	99.41
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	99.39
cd01128	249	rho_factor Transcription termination factor rho is	99.35
KOG0062|consensus	582		99.34
TIGR01291	253	nodJ ABC-2 type transporter, NodJ family. Nearly a	99.32
TIGR00025	232	Mtu_efflux ABC transporter efflux protein, DrrB fa	99.32
KOG0063|consensus	592		99.31
PRK00409	782	recombination and DNA strand exchange inhibitor pr	99.31
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	99.3
TIGR03861	253	phenyl_ABC_PedC alcohol ABC transporter, permease	99.29
TIGR00611	365	recf recF protein. All proteins in this family for	99.26
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	99.23
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.22
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	99.21
PRK13830	818	conjugal transfer protein TrbE; Provisional	99.21
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.21
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.2
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.19
PRK08533	230	flagellar accessory protein FlaH; Reviewed	99.19
PRK13695	174	putative NTPase; Provisional	99.17
PHA02562	562	46 endonuclease subunit; Provisional	99.15
PRK10869	553	recombination and repair protein; Provisional	99.15
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	99.15
PRK15066	257	inner membrane transport permease; Provisional	99.13
PRK03918	880	chromosome segregation protein; Provisional	99.12
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.11
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	99.08
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	99.06
COG3910	233	Predicted ATPase [General function prediction only	99.05
PRK01156	895	chromosome segregation protein; Provisional	99.04
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	99.04
PRK10246	1047	exonuclease subunit SbcC; Provisional	98.94
PRK06067	234	flagellar accessory protein FlaH; Validated	98.93
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.84
COG0842	286	ABC-type multidrug transport system, permease comp	98.82
smart00382	148	AAA ATPases associated with a variety of cellular	98.82
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.8
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.8
PRK13891	852	conjugal transfer protein TrbE; Provisional	98.8
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.78
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	98.76
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.72
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	98.72
TIGR01248	152	drrC daunorubicin resistance protein C. The model	98.68
PRK02224	880	chromosome segregation protein; Provisional	98.67
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	98.67
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.62
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.59
COG0411	250	LivG ABC-type branched-chain amino acid transport	98.57
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	98.56
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	98.56
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.52
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	98.48
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.47
PRK05399	854	DNA mismatch repair protein MutS; Provisional	98.47
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	98.46
PRK13873	811	conjugal transfer ATPase TrbE; Provisional	98.45
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	98.39
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	98.33
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.31
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.31
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.26
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	98.25
PF13558	90	SbcCD_C: Putative exonuclease SbcCD, C subunit; PD	98.23
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	98.22
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.2
COG1195	363	RecF Recombinational DNA repair ATPase (RecF pathw	98.17
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.16
TIGR03518	240	ABC_perm_GldF gliding motility-associated ABC tran	98.16
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.14
COG4637	373	Predicted ATPase [General function prediction only	98.13
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	98.11
PRK00300	205	gmk guanylate kinase; Provisional	98.1
PF09818	448	ABC_ATPase: Predicted ATPase of the ABC class; Int	98.09
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	98.09

>KOG0061|consensus

Probab=100.00  E-value=1.5e-102  Score=879.67  Aligned_cols=557  Identities=35%  Similarity=0.636  Sum_probs=477.1

Q ss_pred             CCCCCCceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCccEEEEC
Q psy13765         20 SLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN--GVTGQILTN   97 (606)
Q Consensus        20 ~~~~~~~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~--~~~G~I~~~   97 (606)
                      ..+...++.++|+|++++.+.+..   ..|++|+|||++++|||++|||||||||||||||+|+|+...  ..+|+|.+|
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~---~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN   93 (613)
T KOG0061|consen   17 ELPYLEPVKLSFRNLTLSSKEKSK---KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN   93 (613)
T ss_pred             cccccccceeEEEEEEEEecCCCC---ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence            344566789999999999864321   468899999999999999999999999999999999999875  379999999


Q ss_pred             CccCChhhhcccEEEEccCCCCCCCCcHHHH-------------------------HHHcCCccccCCccccCChHHHHH
Q psy13765         98 GHSRNINAFRRVSCYIQQDDRLQPLLTIENV-------------------------MSLLGLDESQNTRSSQLSGGQKKR  152 (606)
Q Consensus        98 G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~-------------------------l~~~gl~~~~~~~~~~lSgGqrqR  152 (606)
                      |++.+.+.+++.+|||.|||.++|.+||+|.                         ++.+||.+++|+++++        
T Consensus        94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~--------  165 (613)
T KOG0061|consen   94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGN--------  165 (613)
T ss_pred             CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecC--------
Confidence            9888888999999999999999999998554                         4455555555555542        


Q ss_pred             HHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy13765        153 LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIH  232 (606)
Q Consensus       153 v~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H  232 (606)
                                       .-..++||||||||+||.+|++||+||+|||||||||+.++.++++.|+++|++|+|||+|+|
T Consensus       166 -----------------~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIH  228 (613)
T KOG0061|consen  166 -----------------PGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIH  228 (613)
T ss_pred             -----------------CCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEe
Confidence                             222334444444444555555559999999999999999999999999999999999999999


Q ss_pred             CCchHHHhhcceeeeecCCcEEEEcChhHHHHHHHhCCCCCCCCCChHHHHHHHhcCCcCcccHHHHHHHHhcCCC---C
Q psy13765        233 QPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASGEYGVDNINAMVEQAQNDVK---P  309 (606)
Q Consensus       233 ~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~~f~~~g~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  309 (606)
                      ||+.+++++||++++|++|+++|+|+++++.+||++.|++||++.||+||++|+.+.+...+......+..+....   .
T Consensus       229 QPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~  308 (613)
T KOG0061|consen  229 QPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQT  308 (613)
T ss_pred             CCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhcccc
Confidence            9999999999999999999999999999999999999999999999999999999865111121111111111100   0


Q ss_pred             cccccc---cc-cc-c-ccCccccCCChHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHh
Q psy13765        310 DKKTKK---TK-HC-T-YSNQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLI  383 (606)
Q Consensus       310 ~~~~~~---~~-~~-~-~~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~all~G~~f~~~~~~~~~~~~  383 (606)
                      ....+.   .. .. . ...+....++||.|+++|++|.+++.+|||.+...|+++.+++|+++|++||+.+++..++++
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~  388 (613)
T KOG0061|consen  309 DNLKKTLEALEKSLSTSKKVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQN  388 (613)
T ss_pred             chhhhhHHHHhhhcccccccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHH
Confidence            000000   00 00 0 111111278999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhheecccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCchHH
Q psy13765        384 NYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTR  463 (606)
Q Consensus       384 ~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~~~  463 (606)
                      +.|++|+++.+..+.+++.++..|+.||++|.||+.+|+|+.++||+|++++++|+.++.+++|.+|+|||+|++++..+
T Consensus       389 ~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~  468 (613)
T KOG0061|consen  389 RLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSR  468 (613)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHhccccc-hhHHHHHHHHHHHHHHhcccccCCCCcccccccccccCHHHHHHHHHHHHH
Q psy13765        464 FTMFNCTSLLVVFIAQSVGYMVGAVFNV-VNGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAI  542 (606)
Q Consensus       464 f~~f~~~~~l~~~~~~~~g~~i~~~~~~-~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~iS~~~y~~eal~~n~  542 (606)
                      |++|++++++..++++++|++++++.++ ..|++++|++++++++|+||+++.++||+||+|++|+||++|++||++.||
T Consensus       469 f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~  548 (613)
T KOG0061|consen  469 FLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQ  548 (613)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHH
Confidence            9999999999999999999999999874 459999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcccccCCC--ccccCChhHHHhhcCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhhhhccC
Q psy13765        543 YGLDRKTLQCDEL--YCHYKEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIKVMR  606 (606)
Q Consensus       543 ~~~~~~~~~c~~~--~c~~~~g~~~L~~~~~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~~~~~r  606 (606)
                      |+.  ....|...  .|...+|+++++..++.+.+.|.|+.+++++.++|++++|++|+++.|++|
T Consensus       549 ~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~  612 (613)
T KOG0061|consen  549 FSG--GSSRCFLSGNLCCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR  612 (613)
T ss_pred             hhc--cccccccCcCCcccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence            984  34556532  466678999999999999999999999999999999999999999999875

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=4.2e-100  Score=867.67  Aligned_cols=569  Identities=27%  Similarity=0.438  Sum_probs=466.9

Q ss_pred             CCCceEEEEEeeEEEEecCC---------------------cccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHH
Q psy13765         23 TADRIEIKFKDLTYTVSTGL---------------------GFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDV   81 (606)
Q Consensus        23 ~~~~~~l~~~nl~~~~~~~~---------------------~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~   81 (606)
                      ...++.+++.|++|+++.+.                     +.+++++++|+|+|+++++||++||+||||||||||||+
T Consensus        34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~i  113 (659)
T PLN03211         34 SCYPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNA  113 (659)
T ss_pred             CCCceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHH
Confidence            34578999999999986432                     112345789999999999999999999999999999999


Q ss_pred             HhCCCCCC-CccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHH-HHHHHHHHH
Q psy13765         82 LSGYRSNG-VTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQK-KRLSIALEL  159 (606)
Q Consensus        82 L~g~~~~~-~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqr-qRv~ia~~L  159 (606)
                      |+|+.++. .+|+|.+||++... ..++.+|||+|++.+++.+||.|.+......    +.....+.-|+ +++.-..+.
T Consensus       114 LaG~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~----~~~~~~~~~~~~~~v~~~l~~  188 (659)
T PLN03211        114 LAGRIQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLL----RLPKSLTKQEKILVAESVISE  188 (659)
T ss_pred             HhCCCCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHh----CCCCCCCHHHHHHHHHHHHHH
Confidence            99997653 58999999987653 3456799999999999999998887642111    11123444343 334322222


Q ss_pred             hc---CCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q psy13765        160 IN---NPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSA  236 (606)
Q Consensus       160 ~~---~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~  236 (606)
                      +.   ..+-.+.|++..++|||||||++||++|+++|+||+|||||+|||+.++.++++.|++++++|+|||+++|||+.
T Consensus       189 lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~  268 (659)
T PLN03211        189 LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSS  268 (659)
T ss_pred             cCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCH
Confidence            21   123345677889999999999999999999999999999999999999999999999999889999999999987


Q ss_pred             HHHhhcceeeeecCCcEEEEcChhHHHHHHHhCCCCCCCCCChHHHHHHHhcCCcCc------cc---HHHHHHHHhcCC
Q psy13765        237 TLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASGEYGV------DN---INAMVEQAQNDV  307 (606)
Q Consensus       237 ~i~~~~D~v~~L~~G~~~~~G~~~~~~~~f~~~g~~~~~~~~~ad~~~~~~~~~~~~------~~---~~~~~~~~~~~~  307 (606)
                      ++.++||++++|++|++++.|+++++.+||+++|++||.+.|||||++++++.+...      +.   .+.+.+.++...
T Consensus       269 ~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  348 (659)
T PLN03211        269 RVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLL  348 (659)
T ss_pred             HHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhc
Confidence            788999999999999999999999999999999999999999999999998764211      00   111222222111


Q ss_pred             CCcccc-------cc-ccc-----cccc---CccccCCChHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhh
Q psy13765        308 KPDKKT-------KK-TKH-----CTYS---NQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLF  371 (606)
Q Consensus       308 ~~~~~~-------~~-~~~-----~~~~---~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~all~G~~f  371 (606)
                      .+....       .. ...     ..+.   ....+.++||+|+++|++|++++ +||+.+..+|+++++++|+++|++|
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf  427 (659)
T PLN03211        349 APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMW  427 (659)
T ss_pred             cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHH
Confidence            100000       00 000     0000   11224578999999999999988 8999999999999999999999999


Q ss_pred             cCCCCChHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhheecccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhh
Q psy13765        372 QNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIV  451 (606)
Q Consensus       372 ~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~~~elP~~~~~~~~f~~i~  451 (606)
                      |+++  ..+++++.|++||++++..+.++++++..|+.||++|+||+.+|+|++++|++||+++|+|+.++.+++|++|+
T Consensus       428 ~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~  505 (659)
T PLN03211        428 WHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVT  505 (659)
T ss_pred             hcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhe
Confidence            9985  67899999999999999888888899999999999999999999999999999999999999999999999999


Q ss_pred             hcccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHhccccch-hHHHHHHHHHHHHHHhcccccCCCCcccccccccccCH
Q psy13765        452 YPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVV-NGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSY  530 (606)
Q Consensus       452 Y~l~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~~~~~-~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~iS~  530 (606)
                      |||+|+++++.+|++|+++++++.++++++|+++++++++. .|+.++|++++++++|+||+++  +||+||+|++|+||
T Consensus       506 Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~  583 (659)
T PLN03211        506 YWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYIST  583 (659)
T ss_pred             eEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCH
Confidence            99999999999999999999999999999999999998754 5999999999999999999997  79999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCc---ccccCCCccccCChhHHHhhcCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhh
Q psy13765        531 LRYGLEGYVAAIYGLDRK---TLQCDELYCHYKEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWR  601 (606)
Q Consensus       531 ~~y~~eal~~n~~~~~~~---~~~c~~~~c~~~~g~~~L~~~~~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~  601 (606)
                      ++|++||++.|||+..+.   .+.|++.+|....+-.++....+.+.+.|.|+++|++++++|++++|++|++.
T Consensus       584 ~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~  657 (659)
T PLN03211        584 TFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRI  657 (659)
T ss_pred             HHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999975332   35787555543333334444455566799999999999999999999999754

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=100.00  E-value=1.1e-99  Score=862.63  Aligned_cols=576  Identities=30%  Similarity=0.508  Sum_probs=484.9

Q ss_pred             CCCCceEEEEEeeEEEEecCC-cccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC--CccEEEECC
Q psy13765         22 ETADRIEIKFKDLTYTVSTGL-GFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG--VTGQILTNG   98 (606)
Q Consensus        22 ~~~~~~~l~~~nl~~~~~~~~-~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~--~~G~I~~~G   98 (606)
                      ......+++++++. +++... +.+++++++|+|+|+++++||+++|+|||||||||||++|+|+.+++  .+|+|.+||
T Consensus        11 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g   89 (617)
T TIGR00955        11 FGRVAQDGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNG   89 (617)
T ss_pred             cccccccchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECC
Confidence            33445677888877 554332 12244678999999999999999999999999999999999987653  479999999


Q ss_pred             ccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHH-HHHHHHHHhcCCcccccCCCC-----
Q psy13765         99 HSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKK-RLSIALELINNPRVMFLDEPT-----  172 (606)
Q Consensus        99 ~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrq-Rv~ia~~L~~~~~~~~~de~~-----  172 (606)
                      .+.+...+++.+|||+|+|.+++.+||.|.+......    +...+++.-+++ |+.-..+.+.-.+  ..|.+.     
T Consensus        90 ~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~----~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~t~vg~~~~  163 (617)
T TIGR00955        90 MPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHL----RMPRRVTKKEKRERVDEVLQALGLRK--CANTRIGVPGR  163 (617)
T ss_pred             EECCHHHHhhhceeeccccccCccCcHHHHHHHHHhc----CCCCCCCHHHHHHHHHHHHHHcCchh--cCcCccCCCCC
Confidence            9877667888999999999999999998877642110    112334544432 3443333322211  234443     


Q ss_pred             -CCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCC
Q psy13765        173 -TSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGG  251 (606)
Q Consensus       173 -~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G  251 (606)
                       .++||||||||+||+||+++|++++|||||+|||+.++..+++.|++++++|+|||+++|||+.+++++||++++|++|
T Consensus       164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G  243 (617)
T TIGR00955       164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEG  243 (617)
T ss_pred             CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCC
Confidence             4699999999999999999999999999999999999999999999999889999999999988899999999999999


Q ss_pred             cEEEEcChhHHHHHHHhCCCCCCCCCChHHHHHHHhcCCcCccc-----HHHHHHHHhcCCCCccccc-----ccc-c--
Q psy13765        252 QCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASGEYGVDN-----INAMVEQAQNDVKPDKKTK-----KTK-H--  318 (606)
Q Consensus       252 ~~~~~G~~~~~~~~f~~~g~~~~~~~~~ad~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~~-~--  318 (606)
                      +++|.|+++++.+||+++|++||++.||+||++++++.+.+.+.     .+++.+.++.+.......+     ... .  
T Consensus       244 ~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  323 (617)
T TIGR00955       244 RVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGL  323 (617)
T ss_pred             eEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhcccccc
Confidence            99999999999999999999999999999999999876543211     1222233322211000000     000 0  


Q ss_pred             -ccc--cCccccCCChHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhHHHHHHHHHHHH
Q psy13765        319 -CTY--SNQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHH  395 (606)
Q Consensus       319 -~~~--~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~all~G~~f~~~~~~~~~~~~~~g~lf~~~~~~  395 (606)
                       .+.  .+...+..+++.|+.+|++|++++.+|||.++.+|+++.+++|+++|++|+++++++.+++++.|++|+++++.
T Consensus       324 ~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~  403 (617)
T TIGR00955       324 VKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNM  403 (617)
T ss_pred             ccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence             000  12234578999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhhhhheecccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCchHHHHHHHHHHHHHH
Q psy13765        396 VMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVV  475 (606)
Q Consensus       396 ~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~~~f~~f~~~~~l~~  475 (606)
                      .|.+++..+..|+.||++|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+||.|+++++++.
T Consensus       404 ~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~  483 (617)
T TIGR00955       404 TFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVA  483 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHH
Confidence            99988889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHhccccchh-HHHHHHHHHHHHHHhcccccCCCCcccccccccccCHHHHHHHHHHHHHhcCCCcccccCC
Q psy13765        476 FIAQSVGYMVGAVFNVVN-GTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDE  554 (606)
Q Consensus       476 ~~~~~~g~~i~~~~~~~~-a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~iS~~~y~~eal~~n~~~~~~~~~~c~~  554 (606)
                      ++++++|+++++++++.. |+.+++++++++++|+||+++.++||+||+|++|+||++|++||++.|||++.. ..+|++
T Consensus       484 ~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~-~~~c~~  562 (617)
T TIGR00955       484 NVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVD-NIECTS  562 (617)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCc-cccccC
Confidence            999999999999987654 999999999999999999999999999999999999999999999999997432 236752


Q ss_pred             ----CccccCChhHHHhhcCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhhhhccC
Q psy13765        555 ----LYCHYKEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIKVMR  606 (606)
Q Consensus       555 ----~~c~~~~g~~~L~~~~~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~~~~~r  606 (606)
                          ..|+. +|+++|+.+|++.++.|.|+++|++++++|++++|++|+++.|++|
T Consensus       563 ~~~~~~c~~-~g~~~l~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~  617 (617)
T TIGR00955       563 ANTTGPCPS-SGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIRIRRKR  617 (617)
T ss_pred             cCcCCCCCc-ChHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence                34864 6899999999999999999999999999999999999999999987

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=1e-94  Score=877.10  Aligned_cols=574  Identities=22%  Similarity=0.358  Sum_probs=472.6

Q ss_pred             ceEEEEEeeEEEEecCCc-----ccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC-CCccEEEECCc
Q psy13765         26 RIEIKFKDLTYTVSTGLG-----FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN-GVTGQILTNGH   99 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~-----~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~-~~~G~I~~~G~   99 (606)
                      +..++|+||+|+++.+..     .+++++++|+|||++++|||++||+||||||||||||+|+|+.++ ..+|+|.+||+
T Consensus       865 ~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~  944 (1470)
T PLN03140        865 PLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGF  944 (1470)
T ss_pred             cceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCc
Confidence            458999999999964321     122456799999999999999999999999999999999999654 26899999998


Q ss_pred             cCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHH-HHHHHHHHHhcCCcccccCCC-----CC
Q psy13765        100 SRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQK-KRLSIALELINNPRVMFLDEP-----TT  173 (606)
Q Consensus       100 ~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqr-qRv~ia~~L~~~~~~~~~de~-----~~  173 (606)
                      +.+...+++.+|||+|+|.+++.+||.|.+......    +...+.+.-++ +++.-..+.+.-.+  +.|..     ..
T Consensus       945 ~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~l----r~~~~~~~~~~~~~v~~vl~~lgL~~--~~~~~vg~~~~~ 1018 (1470)
T PLN03140        945 PKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFL----RLPKEVSKEEKMMFVDEVMELVELDN--LKDAIVGLPGVT 1018 (1470)
T ss_pred             cCChHHhhhheEEEccccccCCCCcHHHHHHHHHHh----CCCCCCCHHHHHHHHHHHHHHCCChh--HhCCccCCCCCC
Confidence            766556678899999999999999998887642110    11223344333 33433333332111  23444     36


Q ss_pred             CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC-Cc
Q psy13765        174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG-GQ  252 (606)
Q Consensus       174 ~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~-G~  252 (606)
                      ++||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+
T Consensus      1019 ~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~ 1098 (1470)
T PLN03140       1019 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1098 (1470)
T ss_pred             CcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCE
Confidence            89999999999999999999999999999999999999999999999989999999999999778899999999986 89


Q ss_pred             EEEEcCh----hHHHHHHHhC-CCC-CCCCCChHHHHHHHhcCCcCcccHHHHHHHHhcCCCCcccccc---cccc-c--
Q psy13765        253 CLYQGAT----DQLVNYLSSV-NLP-CPKYHNPADFVIELASGEYGVDNINAMVEQAQNDVKPDKKTKK---TKHC-T--  320 (606)
Q Consensus       253 ~~~~G~~----~~~~~~f~~~-g~~-~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~--  320 (606)
                      ++|+|++    +++.+||+++ |++ ||+..|||||++|+++.........++.+.++++.......+.   .... +  
T Consensus      1099 ~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 1178 (1470)
T PLN03140       1099 VIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGA 1178 (1470)
T ss_pred             EEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCc
Confidence            9999996    5899999997 664 9999999999999987543222112333444333211100000   0000 0  


Q ss_pred             -cc-CccccCCChHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhcCCCCCh---HHHHhHHHHHHHHHHHH
Q psy13765        321 -YS-NQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYA---SSVLINYNLLFSILIHH  395 (606)
Q Consensus       321 -~~-~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~all~G~~f~~~~~~~---~~~~~~~g~lf~~~~~~  395 (606)
                       +. ....+..++|+|+++|++|+++++||||.++.+|+++++++|+++|++||+++++.   ++++++.|++|+++++.
T Consensus      1179 ~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~ 1258 (1470)
T PLN03140       1179 SDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFV 1258 (1470)
T ss_pred             cccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHH
Confidence             00 13457889999999999999999999999999999999999999999999999765   56778899999999998


Q ss_pred             HHHHHHHHhhhhhhhhhhheecccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCchHHHHHHHHHHHHHH
Q psy13765        396 VMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVV  475 (606)
Q Consensus       396 ~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~~~f~~f~~~~~l~~  475 (606)
                      ++..+++..+.|..||++|+||+++|+|++++|++|++++|+|+.++.+++|.+|+|||+|+++++.+||+|+++++++.
T Consensus      1259 ~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~ 1338 (1470)
T PLN03140       1259 GINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSF 1338 (1470)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Confidence            88888888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHhccccchh-HHHHHHHHHHHHHHhcccccCCCCcccccccccccCHHHHHHHHHHHHHhcCCCcccccCC
Q psy13765        476 FIAQSVGYMVGAVFNVVN-GTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDE  554 (606)
Q Consensus       476 ~~~~~~g~~i~~~~~~~~-a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~iS~~~y~~eal~~n~~~~~~~~~~c~~  554 (606)
                      ++++++|+++++++|+.. |..++++++.++++|+||++|+++||+||+|++|+||++|+++|++.|||++...+..|+.
T Consensus      1339 ~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~ 1418 (1470)
T PLN03140       1339 LYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPG 1418 (1470)
T ss_pred             HHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCC
Confidence            999999999999987654 9999999999999999999999999999999999999999999999999974322223321


Q ss_pred             CccccCChhHH-HhhcCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhhhhccC
Q psy13765        555 LYCHYKEPKKF-LQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIKVMR  606 (606)
Q Consensus       555 ~~c~~~~g~~~-L~~~~~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~~~~~r  606 (606)
                      ... ..+++++ ++.||+++++.|++++++++++++|++++++++++....+|
T Consensus      1419 ~~~-~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140       1419 GAP-DPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred             CCC-CCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence            000 1345666 57899999999999999999999999999999998877766

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=1.4e-94  Score=878.46  Aligned_cols=565  Identities=24%  Similarity=0.390  Sum_probs=470.9

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCccEEEECCccCChh
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN--GVTGQILTNGHSRNIN  104 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~--~~~G~I~~~G~~~~~~  104 (606)
                      ..++++||+++++.+    ++++.+|+|||+++++||++||+||||||||||||+|+|+.++  ..+|+|.+||++.+ .
T Consensus       758 ~~l~~~nl~~~~~~~----~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~-~  832 (1394)
T TIGR00956       758 DIFHWRNLTYEVKIK----KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD-S  832 (1394)
T ss_pred             ceEEEEeeEEEecCC----CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC-h
Confidence            458999999998522    3457899999999999999999999999999999999999763  24799999999875 3


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHH-HHHHHHHHHhcCCcccccCCCCC----CCCchh
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQK-KRLSIALELINNPRVMFLDEPTT----SNPNDQ  179 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqr-qRv~ia~~L~~~~~~~~~de~~~----~~s~g~  179 (606)
                      .+++.+|||+|+|.+++.+||.|.+......    +.+.+.+..++ +++.-+.+.+.-.+  +.|...+    ++||||
T Consensus       833 ~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l----~~~~~~~~~~~~~~v~~~l~~l~L~~--~~d~~v~~~~~~LSgGq  906 (1394)
T TIGR00956       833 SFQRSIGYVQQQDLHLPTSTVRESLRFSAYL----RQPKSVSKSEKMEYVEEVIKLLEMES--YADAVVGVPGEGLNVEQ  906 (1394)
T ss_pred             hhhcceeeecccccCCCCCCHHHHHHHHHHh----CCCCCCCHHHHHHHHHHHHHHcCChh--hCCCeeCCCCCCCCHHH
Confidence            5788899999999999999998887652110    11223444443 34433333332211  3444443    799999


Q ss_pred             hhHHHHHHhhhcCCc-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCC-cEEEEc
Q psy13765        180 KKRLSIALELINNPR-VMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGG-QCLYQG  257 (606)
Q Consensus       180 ~krl~IA~aL~~~P~-lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G-~~~~~G  257 (606)
                      ||||+||+||+.+|+ ||||||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++| ++++.|
T Consensus       907 rqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G  986 (1394)
T TIGR00956       907 RKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFG  986 (1394)
T ss_pred             hhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEEC
Confidence            999999999999997 999999999999999999999999999889999999999997777899999999987 999999


Q ss_pred             Ch----hHHHHHHHhCCC-CCCCCCChHHHHHHHhcCCcCcccHHHHHHHHhcCCCCcccc----c--cccc-cc-c---
Q psy13765        258 AT----DQLVNYLSSVNL-PCPKYHNPADFVIELASGEYGVDNINAMVEQAQNDVKPDKKT----K--KTKH-CT-Y---  321 (606)
Q Consensus       258 ~~----~~~~~~f~~~g~-~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~-~~-~---  321 (606)
                      ++    +++.+||++.|+ +||++.|||||++|+++...+.+..+.+.+.++.+.......    .  .... .+ .   
T Consensus       987 ~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1394)
T TIGR00956       987 DLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDP 1066 (1394)
T ss_pred             CcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCcccccc
Confidence            97    578999999996 999999999999999876433222223333443322110000    0  0000 00 0   


Q ss_pred             cCccccCCChHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhHHHHHHHHHHHHHHHHHH
Q psy13765        322 SNQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMM  401 (606)
Q Consensus       322 ~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~all~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~  401 (606)
                      .....+.+|+++|+++|++|+++++||||.++.+|+++++++|+++|++|+++++++.+++++.|++|+++++..+. +.
T Consensus      1067 ~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~-~~ 1145 (1394)
T TIGR00956      1067 DALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPL-IQ 1145 (1394)
T ss_pred             ccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH-HH
Confidence            11235788999999999999999999999999999999999999999999999999999999999999888776655 45


Q ss_pred             HHhhhhhhhhhhh-eecccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCchHH-------HHHHHHHHHH
Q psy13765        402 LNILTFPMEMSIL-IKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTR-------FTMFNCTSLL  473 (606)
Q Consensus       402 ~~~~~f~~er~v~-~rE~~~~~Y~~~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~~~-------f~~f~~~~~l  473 (606)
                      ..++.|+.||.+| +||+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+|+++++..       |++|++++++
T Consensus      1146 ~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~ 1225 (1394)
T TIGR00956      1146 QYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTM 1225 (1394)
T ss_pred             HhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHH
Confidence            6788888899886 8999999999999999999999999999999999999999999988765       9999999999


Q ss_pred             HHHHHHHHHhHHhccccc-hhHHHHHHHHHHHHHHhcccccCCCCcccccccccccCHHHHHHHHHHHHHhcCCCccccc
Q psy13765        474 VVFIAQSVGYMVGAVFNV-VNGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQC  552 (606)
Q Consensus       474 ~~~~~~~~g~~i~~~~~~-~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~iS~~~y~~eal~~n~~~~~~~~~~c  552 (606)
                      +.++++++|+++++++++ ..|+.++|++++++++|+||++++++||.||+|++|+||++|++||++.|+|++.  +.+|
T Consensus      1226 ~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~--~~~C 1303 (1394)
T TIGR00956      1226 FFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADV--PVTC 1303 (1394)
T ss_pred             HHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCC--eeec
Confidence            999999999999999875 4599999999999999999999999999999999999999999999999999732  3444


Q ss_pred             CC--------------------------------------CccccCChhHHHhhcCCCCCChhhhHHHHHHHHHHHHHHH
Q psy13765        553 DE--------------------------------------LYCHYKEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIA  594 (606)
Q Consensus       553 ~~--------------------------------------~~c~~~~g~~~L~~~~~~~~~~w~~~~il~~~~~~~~~~~  594 (606)
                      ++                                      .||++.+|+++|+.+|++.+++|+|+++++++++++ +++
T Consensus      1304 ~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~ 1382 (1394)
T TIGR00956      1304 KVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-IIA 1382 (1394)
T ss_pred             CccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HHH
Confidence            31                                      367889999999999999999999999999999998 899


Q ss_pred             HHHHHhhhhccC
Q psy13765        595 YFFLSWRIKVMR  606 (606)
Q Consensus       595 ~~~L~~~~~~~r  606 (606)
                      +++|+|+.|.++
T Consensus      1383 ~~~l~~~~r~~k 1394 (1394)
T TIGR00956      1383 TVFFYWLARVPK 1394 (1394)
T ss_pred             HHhhheEEEcCC
Confidence            999999877664

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=1.8e-93  Score=868.60  Aligned_cols=574  Identities=19%  Similarity=0.315  Sum_probs=476.6

Q ss_pred             CceEEEEEeeEEEEecCC-----c-------------------ccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHH
Q psy13765         25 DRIEIKFKDLTYTVSTGL-----G-------------------FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLD   80 (606)
Q Consensus        25 ~~~~l~~~nl~~~~~~~~-----~-------------------~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~   80 (606)
                      ..+.+.|+||+++.....     +                   .++.++++|+|||+++++||+++|+||||||||||||
T Consensus        26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk  105 (1394)
T TIGR00956        26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK  105 (1394)
T ss_pred             CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence            368899999998863211     0                   0123367999999999999999999999999999999


Q ss_pred             HHhCCCC---CCCccEEEECCccCCh--hhhcccEEEEccCCCCCCCCcHHHHHHHc-CCccccCCccccCChHHH-HHH
Q psy13765         81 VLSGYRS---NGVTGQILTNGHSRNI--NAFRRVSCYIQQDDRLQPLLTIENVMSLL-GLDESQNTRSSQLSGGQK-KRL  153 (606)
Q Consensus        81 ~L~g~~~---~~~~G~I~~~G~~~~~--~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~-gl~~~~~~~~~~lSgGqr-qRv  153 (606)
                      +|+|+..   .+.+|+|.+||++.+.  ..+++.++||+|+|.+++.+||.|.+... .+.. ......+++.-|+ +++
T Consensus       106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~-~~~~~~~~~~~~~~~~~  184 (1394)
T TIGR00956       106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKT-PQNRPDGVSREEYAKHI  184 (1394)
T ss_pred             HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCC-CCCCCCCCCHHHHHHHH
Confidence            9999863   2368999999987532  34566799999999999999999887652 1111 0111123444443 232


Q ss_pred             -HHHHHHhc---CCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEE
Q psy13765        154 -SIALELIN---NPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTII  228 (606)
Q Consensus       154 -~ia~~L~~---~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii  228 (606)
                       ....+.+.   ..+-.+.|+...++||||||||+||++|+++|+|++|||||+|||+.++.++++.|++++++ |+|||
T Consensus       185 ~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvi  264 (1394)
T TIGR00956       185 ADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPL  264 (1394)
T ss_pred             HHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEE
Confidence             22233222   22334677888999999999999999999999999999999999999999999999999875 99999


Q ss_pred             EEecCCchHHHhhcceeeeecCCcEEEEcChhHHHHHHHhCCCCCCCCCChHHHHHHHhcCCcC----------cccHHH
Q psy13765        229 CTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASGEYG----------VDNINA  298 (606)
Q Consensus       229 ~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~~f~~~g~~~~~~~~~ad~~~~~~~~~~~----------~~~~~~  298 (606)
                      +++|||+.+++++||++++|++|+++++|+++++.+||+++|++||++.|||||++++++.+..          ....++
T Consensus       265 i~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~  344 (1394)
T TIGR00956       265 VAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQE  344 (1394)
T ss_pred             EEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhhccccccccCCCCHHH
Confidence            9999998889999999999999999999999999999999999999999999999998865321          011233


Q ss_pred             HHHHHhcCCCCc----------cc---ccc--------ccccc--ccCccccCCChHHHHHHHHHHHHHHhhcChhHHHH
Q psy13765        299 MVEQAQNDVKPD----------KK---TKK--------TKHCT--YSNQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHL  355 (606)
Q Consensus       299 ~~~~~~~~~~~~----------~~---~~~--------~~~~~--~~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~  355 (606)
                      +.+.++++...+          ..   ...        ....+  ......+..|+|+|+++|++|++++.+|||.++.+
T Consensus       345 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~  424 (1394)
T TIGR00956       345 FETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLF  424 (1394)
T ss_pred             HHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            333333322100          00   000        00000  11233577899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCChHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhheecccCCCcchHHHHHHHHHH
Q psy13765        356 RIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLL  435 (606)
Q Consensus       356 r~~~~i~~all~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~~~  435 (606)
                      |+++++++|+++|++||++++++.+++++.|++||++++.+++++. .+..+..||+||+||+.+++|++++|++|++++
T Consensus       425 r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~-~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~  503 (1394)
T TIGR00956       425 MVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLL-EIASMYEARPIVEKHRKYALYHPSADAIASIIS  503 (1394)
T ss_pred             HHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCcceeeeccccccCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998864 456666899999999999999999999999999


Q ss_pred             HhhHHHHHHhhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHhccccchh-HHHHHHHHHHHHHHhcccccC
Q psy13765        436 DIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVN-GTFVGPVLVVPMMMFSGFGVS  514 (606)
Q Consensus       436 elP~~~~~~~~f~~i~Y~l~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~~~~~~-a~~~~~~~~~~~~lf~G~~i~  514 (606)
                      |+|+.++.+++|++|+|||+|+++++.+||+|+++++++.+++.++++++|+++++.. |+.+++++++++++|+||+++
T Consensus       504 ~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~  583 (1394)
T TIGR00956       504 EIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIP  583 (1394)
T ss_pred             HHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccC
Confidence            9999999999999999999999999999999999999999999999999999987655 999999999999999999999


Q ss_pred             CCCcccccccccccCHHHHHHHHHHHHHhcCCCcccccC---------------CCccc---------cCChhHHHh-hc
Q psy13765        515 INDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCD---------------ELYCH---------YKEPKKFLQ-TV  569 (606)
Q Consensus       515 ~~~ip~~~~W~~~iS~~~y~~eal~~n~~~~~~~~~~c~---------------~~~c~---------~~~g~~~L~-~~  569 (606)
                      .++||+||+|++|+||++|+|||++.|||..  .+++|+               +..|.         +.+|+++|+ .+
T Consensus       584 ~~~mp~~~~W~~yisp~~yafeal~~nef~~--~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~  661 (1394)
T TIGR00956       584 RPSMLGWSKWIYYVNPLAYAFESLMVNEFHG--RRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSF  661 (1394)
T ss_pred             hhhccHHHHHHHHcCHHHHHHHHHHHhhhcC--CcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcC
Confidence            9999999999999999999999999999973  356784               12473         458999998 68


Q ss_pred             CCCCCChhhhHHHHHHHHHHHHHHHHHHHHhhh
Q psy13765        570 SQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRI  602 (606)
Q Consensus       570 ~~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~~  602 (606)
                      +++.+++|+|++||++++++|++++++++.+..
T Consensus       662 ~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~  694 (1394)
T TIGR00956       662 QYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNK  694 (1394)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999998865

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=1.6e-91  Score=849.26  Aligned_cols=575  Identities=20%  Similarity=0.310  Sum_probs=469.9

Q ss_pred             CceEEEEEeeEEEEecCC------c--------------------ccccccccceeeeEEEeCCeEEEEECCCCCCHHHH
Q psy13765         25 DRIEIKFKDLTYTVSTGL------G--------------------FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSL   78 (606)
Q Consensus        25 ~~~~l~~~nl~~~~~~~~------~--------------------~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTL   78 (606)
                      +.+.++|+||++.-....      +                    .++.++++|+|||+.++|||+++|+||||||||||
T Consensus       128 ~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTL  207 (1470)
T PLN03140        128 PTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTL  207 (1470)
T ss_pred             CCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHH
Confidence            467899999998764110      0                    01234679999999999999999999999999999


Q ss_pred             HHHHhCCCCCC--CccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcC-CccccCC--ccccCChHHHH--
Q psy13765         79 LDVLSGYRSNG--VTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLG-LDESQNT--RSSQLSGGQKK--  151 (606)
Q Consensus        79 L~~L~g~~~~~--~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~g-l~~~~~~--~~~~lSgGqrq--  151 (606)
                      ||+|+|+.++.  .+|+|.+||++.+....++.++||+|+|.+++.+||.|.+.... +......  ...+++..|++  
T Consensus       208 Lk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~  287 (1470)
T PLN03140        208 LLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAG  287 (1470)
T ss_pred             HHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhcc
Confidence            99999997652  48999999987654334678999999999999999998887531 1110000  01122222221  


Q ss_pred             -----------------------HHHHHHHHhc---CCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCC
Q psy13765        152 -----------------------RLSIALELIN---NPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL  205 (606)
Q Consensus       152 -----------------------Rv~ia~~L~~---~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgL  205 (606)
                                             ++....+.+.   ..+..+.|+...++||||||||+||++|+.+|++++|||||+||
T Consensus       288 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGL  367 (1470)
T PLN03140        288 IFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGL  367 (1470)
T ss_pred             CCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCc
Confidence                                   1121222222   22445778899999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHHHHHhCCCCCCCCCChHHHHH
Q psy13765        206 DSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVI  284 (606)
Q Consensus       206 D~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~~f~~~g~~~~~~~~~ad~~~  284 (606)
                      |+.++.++++.|+++++ .|+|+|+++|||+++++++||+|++|++|+++|+|+++++.+||+++|++||++.|||||++
T Consensus       368 Ds~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~  447 (1470)
T PLN03140        368 DSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQ  447 (1470)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHH
Confidence            99999999999999987 58999999999988899999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCcCc------------ccHHHHHHHHhcCCCCccc-cc-------ccccccccCccccCCChHHHHHHHHHHHHH
Q psy13765        285 ELASGEYGV------------DNINAMVEQAQNDVKPDKK-TK-------KTKHCTYSNQILQDTSYSNQLGVLLSRGLL  344 (606)
Q Consensus       285 ~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~  344 (606)
                      ++++.+...            ...+++.++++++...... .+       ...+........+..+++.|++.|++|+++
T Consensus       448 ~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~  527 (1470)
T PLN03140        448 EVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWL  527 (1470)
T ss_pred             HhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHH
Confidence            998753220            0123344444433211000 00       000000112344788999999999999999


Q ss_pred             HhhcChhHHHHHHHHHHHHHHHHHHhhcCCCCCh---HHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhheecccCC
Q psy13765        345 KVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYA---SSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNR  421 (606)
Q Consensus       345 ~~~Rd~~~~~~r~~~~i~~all~G~~f~~~~~~~---~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~  421 (606)
                      +++||+..+..|+++.+++|+++|++||+++.++   .+.+.+.|.+||++++.++.++ +.+..++.||+||+||+.++
T Consensus       528 ~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~-~~l~~~~~~r~vf~ker~~~  606 (1470)
T PLN03140        528 LMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGF-AELALMIQRLPVFYKQRDLL  606 (1470)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccchhHHhhhcc
Confidence            9999999999999999999999999999997542   3356678999999888888775 66888889999999999999


Q ss_pred             CcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHhccccchh-HHHHHHH
Q psy13765        422 WYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVN-GTFVGPV  500 (606)
Q Consensus       422 ~Y~~~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~~~~~~-a~~~~~~  500 (606)
                      +|++++|++|++++|+|+.++.+++|++|+|||+|+++++++||+|+++++++.+++.++++++++++++.. |+.++++
T Consensus       607 ~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~  686 (1470)
T PLN03140        607 FHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGAL  686 (1470)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999987655 9999999


Q ss_pred             HHHHHHHhcccccCCCCcccccccccccCHHHHHHHHHHHHHhcCCCcc-cccCCCccccCChhHHHhhcCCCCC--Chh
Q psy13765        501 LVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKT-LQCDELYCHYKEPKKFLQTVSQPSD--NFW  577 (606)
Q Consensus       501 ~~~~~~lf~G~~i~~~~ip~~~~W~~~iS~~~y~~eal~~n~~~~~~~~-~~c~~~~c~~~~g~~~L~~~~~~~~--~~w  577 (606)
                      +++++++|+||+++.++||+||+|++|+||++||+||++.|||...... ..|...  ....|+++|+.+|+..+  ++|
T Consensus       687 ~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~--~~~~G~~~L~~~g~~~~~~~~w  764 (1470)
T PLN03140        687 VLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDN--STRLGTAVLNIFDVFTDKNWYW  764 (1470)
T ss_pred             HHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCC--CcccHHHHHHhcCcCccccchh
Confidence            9999999999999999999999999999999999999999999643321 122211  24689999999999754  569


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhh
Q psy13765        578 SSSVTLVFILIVMKLIAYFFLSWRI  602 (606)
Q Consensus       578 ~~~~il~~~~~~~~~~~~~~L~~~~  602 (606)
                      +++++|++++++|+++++++|++..
T Consensus       765 ~~~~iL~~~~v~f~~l~~l~L~~~~  789 (1470)
T PLN03140        765 IGVGALLGFTILFNVLFTLALTYLN  789 (1470)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999998765

>KOG0065|consensus

Probab=100.00  E-value=1.9e-90  Score=794.83  Aligned_cols=564  Identities=25%  Similarity=0.411  Sum_probs=458.0

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CccEEEECCccCChhhhc
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG-VTGQILTNGHSRNINAFR  107 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~-~~G~I~~~G~~~~~~~~~  107 (606)
                      ..|+|+.|+.+.    +.+++++|+|||+.++||.++||||+||||||||||+|+|+...+ .+|+|++||.+.+.+.++
T Consensus       788 ~~w~dl~~~~~~----qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~  863 (1391)
T KOG0065|consen  788 FYWVDLPYEMPI----QGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFA  863 (1391)
T ss_pred             EEEEeCCccccc----cccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhc
Confidence            344555555432    346788999999999999999999999999999999999997654 699999999998878999


Q ss_pred             ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHH-HHHHHHHHHhcCCcc--cccCCCCCCCCchhhhHHH
Q psy13765        108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQK-KRLSIALELINNPRV--MFLDEPTTSNPNDQKKRLS  184 (606)
Q Consensus       108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqr-qRv~ia~~L~~~~~~--~~~de~~~~~s~g~~krl~  184 (606)
                      |.+|||.|+|.|.+.+||+|-|..-    ..-+.+.+.+-+|| ..|.--.+++.-.++  -+-..|..+||.+|||||.
T Consensus       864 R~~GYvqQ~DiH~~~~TVrESL~fS----A~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLT  939 (1391)
T KOG0065|consen  864 RVSGYVEQQDIHSPELTVRESLRFS----AALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLT  939 (1391)
T ss_pred             cccceeecccccCcccchHHHHHHH----HHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceee
Confidence            9999999999999999998877652    22234566777887 667666666655433  1334455889999999999


Q ss_pred             HHHhhhcCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec-CCcEEEEcChh--
Q psy13765        185 IALELINNP-RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS-GGQCLYQGATD--  260 (606)
Q Consensus       185 IA~aL~~~P-~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~-~G~~~~~G~~~--  260 (606)
                      ||.+|+.|| .||||||||||||++++..+++.+|+++++|+||+||+|||+..+++.||++++|+ +|+++|.|+..  
T Consensus       940 IgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~ 1019 (1391)
T KOG0065|consen  940 IGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGEN 1019 (1391)
T ss_pred             EEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccc
Confidence            999999999 89999999999999999999999999999999999999999999999999999996 69999999985  


Q ss_pred             --HHHHHHHhCC-CCCCCCCChHHHHHHHhcCCcCcccHHHHHHHHhcCCCCcccccccc---------cccccCccccC
Q psy13765        261 --QLVNYLSSVN-LPCPKYHNPADFVIELASGEYGVDNINAMVEQAQNDVKPDKKTKKTK---------HCTYSNQILQD  328 (606)
Q Consensus       261 --~~~~~f~~~g-~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~  328 (606)
                        .+++||+++| .+||+..|||||++|+++...+.....+..+.|+++...+...+..+         ..+...+..++
T Consensus      1020 s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa 1099 (1391)
T KOG0065|consen 1020 SSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFA 1099 (1391)
T ss_pred             cHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccc
Confidence              4677999988 79999999999999999765443222334445554433211111000         00112345688


Q ss_pred             CChHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy13765        329 TSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFP  408 (606)
Q Consensus       329 ~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~all~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~  408 (606)
                      .|+|.|++.+++|++..+||+|.++.+|++..++.|+++|+.||+.|++.+++++..|.+|+.+++...+........+.
T Consensus      1100 ~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~ 1179 (1391)
T KOG0065|consen 1100 QSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVA 1179 (1391)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999887766554434566777


Q ss_pred             hhhhhheecccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHhcc
Q psy13765        409 MEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAV  488 (606)
Q Consensus       409 ~er~v~~rE~~~~~Y~~~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~  488 (606)
                      .||.+++||+++|+|++.+|++|++++|+|+.++++++|.+|+|+++|+..++.+|++|++.++++.++...+|+++.++
T Consensus      1180 ~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~ 1259 (1391)
T KOG0065|consen 1180 TERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSL 1259 (1391)
T ss_pred             hhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc-hhHHHHHHHHHHHHHHhcccccCCCCcccccccccccCHHHHHHHHHHHHHhcCCCcccccCC-------CccccC
Q psy13765        489 FNV-VNGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDE-------LYCHYK  560 (606)
Q Consensus       489 ~~~-~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~iS~~~y~~eal~~n~~~~~~~~~~c~~-------~~c~~~  560 (606)
                      +|. +.|..+.++++..+.+|||+++|++.||.||+|+||+||+.|-+++++..+++  +.+..|..       .+|..+
T Consensus      1260 tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~--d~~v~c~~~e~~~~~pp~g~t 1337 (1391)
T KOG0065|consen 1260 TPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLG--DVEVTCEDSEMNYFDPPSGQT 1337 (1391)
T ss_pred             CCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhC--CCceeeecCCccccCCCCCcC
Confidence            765 55999999999999999999999999999999999999999999999999997  33456641       123333


Q ss_pred             ChhHHHhhcC----CCCCChhhhHHHHHHHHHHHHHHHHHHHHhhh
Q psy13765        561 EPKKFLQTVS----QPSDNFWSSSVTLVFILIVMKLIAYFFLSWRI  602 (606)
Q Consensus       561 ~g~~~L~~~~----~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~~  602 (606)
                      -|+.+-..+|    +.++..-....+...+.+++.+++.+..++..
T Consensus      1338 cge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~ 1383 (1391)
T KOG0065|consen 1338 CGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLN 1383 (1391)
T ss_pred             HHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHH
Confidence            3444444455    33333333333444455555555555444443

>KOG0065|consensus

Probab=100.00  E-value=1.5e-80  Score=713.22  Aligned_cols=551  Identities=23%  Similarity=0.365  Sum_probs=463.9

Q ss_pred             cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHH
Q psy13765         49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN--GVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIE  126 (606)
Q Consensus        49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~--~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~  126 (606)
                      .++|+|+|+-++|||++.++||+||||||||++|+|-.+.  ...|+|.+||++.+...-++.++|.+|+|.|+|.+||.
T Consensus       128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr  207 (1391)
T KOG0065|consen  128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR  207 (1391)
T ss_pred             ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence            4799999999999999999999999999999999997643  23689999998765433378899999999999999998


Q ss_pred             HHHHHcCCccccCCccccCChHHHHH-----HHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCC
Q psy13765        127 NVMSLLGLDESQNTRSSQLSGGQKKR-----LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP  201 (606)
Q Consensus       127 ~~l~~~gl~~~~~~~~~~lSgGqrqR-----v~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEP  201 (606)
                      +.++...--.-...++.+++.-|+.+     +.--..|-...|.++.|+-.+++||||||||+||.+++.+|+++++||+
T Consensus       208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~  287 (1391)
T KOG0065|consen  208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI  287 (1391)
T ss_pred             ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence            88876543222233344555555543     1111223345566788888888999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHHHHHhCCCCCCCCCChH
Q psy13765        202 TTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPA  280 (606)
Q Consensus       202 TsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~~f~~~g~~~~~~~~~a  280 (606)
                      |+|||+.++.++++.||++++. +.|.+++.|||+++++++||+|++|.+|+++|+||.+++++||+++|+.||++.++|
T Consensus       288 t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~A  367 (1391)
T KOG0065|consen  288 TRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTA  367 (1391)
T ss_pred             cccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHH
Confidence            9999999999999999999884 899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcCcc------------cHHHHHHHHhcCCCCcccc-----ccccc---ccccCccccCCChHHHHHHHHH
Q psy13765        281 DFVIELASGEYGVD------------NINAMVEQAQNDVKPDKKT-----KKTKH---CTYSNQILQDTSYSNQLGVLLS  340 (606)
Q Consensus       281 d~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~s~~~q~~~l~~  340 (606)
                      ||+.++++......            ...++.+.+.++..-....     +..++   ........+..+.|.|++.|++
T Consensus       368 DfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~  447 (1391)
T KOG0065|consen  368 DFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTI  447 (1391)
T ss_pred             HHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHH
Confidence            99999998322110            0123333443332211100     00000   0111345688999999999999


Q ss_pred             HHHHHhhcChhHHHHHHHHHHHHHHHHHHhhcCCC-CChHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhheeccc
Q psy13765        341 RGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSG-EYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHF  419 (606)
Q Consensus       341 R~~~~~~Rd~~~~~~r~~~~i~~all~G~~f~~~~-~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~  419 (606)
                      |.++.+.||..++..+.++.+++|+++|++|++.+ ++..+...+.|++||.+++..+.++ +.+....+.||||+|||.
T Consensus       448 R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~l-aEi~~~~~~~pv~~Khr~  526 (1391)
T KOG0065|consen  448 REFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGL-AEIALTFQRLPVFYKHRD  526 (1391)
T ss_pred             HHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhH-HHHHHHHhhcchHHHhhc
Confidence            99999999999999999999999999999999999 7788889999999999999999886 455555589999999999


Q ss_pred             CCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHhccccchh-HHHHH
Q psy13765        420 NRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVN-GTFVG  498 (606)
Q Consensus       420 ~~~Y~~~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~~~~~~-a~~~~  498 (606)
                      ..+|+++||.++.++.++|..++.+++|.+|+||++|+.+++++||.++++++++.+++.++++++++++++.. |+.++
T Consensus       527 ~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g  606 (1391)
T KOG0065|consen  527 LSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIG  606 (1391)
T ss_pred             ccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998765 99999


Q ss_pred             HHHHHHHHHhcccccCCCCcccccccccccCHHHHHHHHHHHHHhcCCCcccccC------------CCccccC---Chh
Q psy13765        499 PVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCD------------ELYCHYK---EPK  563 (606)
Q Consensus       499 ~~~~~~~~lf~G~~i~~~~ip~~~~W~~~iS~~~y~~eal~~n~~~~~~~~~~c~------------~~~c~~~---~g~  563 (606)
                      ++.++.+.+++||+||.++||+||+|++|+||+.||+|+++.|||..  ...+|.            ...|...   .|.
T Consensus       607 ~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~--~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~  684 (1391)
T KOG0065|consen  607 GILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHG--RRWPCSPSGPAYDNISIENKVCAATGATLGN  684 (1391)
T ss_pred             HHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhc--ccCCCCCCCCcccccccccccchhhccccCc
Confidence            99999999999999999999999999999999999999999999984  347786            3457432   344


Q ss_pred             HHHh-------hcCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhhh
Q psy13765        564 KFLQ-------TVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRI  602 (606)
Q Consensus       564 ~~L~-------~~~~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~~  602 (606)
                      ++++       .|+++..++|++++|++||.++|.++..+++.+..
T Consensus       685 ~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~  730 (1391)
T KOG0065|consen  685 DYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLK  730 (1391)
T ss_pred             eEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence            4444       35556889999999999999999999999887654

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.4e-50  Score=388.72  Aligned_cols=208  Identities=30%  Similarity=0.539  Sum_probs=180.1

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC----Ch
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR----NI  103 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~----~~  103 (606)
                      .|+++||+++|        +...+|+|||++|++||+++|+|||||||||||+||.++..+ .+|+|.++|...    +.
T Consensus         2 mi~i~~l~K~f--------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~-~~G~I~i~g~~~~~~~~~   72 (240)
T COG1126           2 MIEIKNLSKSF--------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP-DSGSITVDGEDVGDKKDI   72 (240)
T ss_pred             eEEEEeeeEEe--------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCC-CCceEEECCEeccchhhH
Confidence            58999999997        567899999999999999999999999999999999999877 599999999644    34


Q ss_pred             hhhcccEEEEccCCCCCCCCcH-----------------------HHHHHHcCCccccCCccccCChHHHHHHHHHHHHh
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTI-----------------------ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELI  160 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv-----------------------~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~  160 (606)
                      ..+|+.+|+|||+..|||.+||                       .++|+.+||.+.++.++.+|||||||||+|||||+
T Consensus        73 ~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALa  152 (240)
T COG1126          73 LKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA  152 (240)
T ss_pred             HHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHc
Confidence            6788999999999999999997                       34566677777777778888888877777555555


Q ss_pred             cCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh
Q psy13765        161 NNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQ  240 (606)
Q Consensus       161 ~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~  240 (606)
                      .+                              |+++++|||||+|||+...++.+.+++|+++|.|.|++||+.. .+.+
T Consensus       153 M~------------------------------P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~-FAr~  201 (240)
T COG1126         153 MD------------------------------PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG-FARE  201 (240)
T ss_pred             CC------------------------------CCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH-HHHH
Confidence            55                              9999999999999999999999999999999999999999987 4779


Q ss_pred             hcceeeeecCCcEEEEcChhHHHHHHHhCCCCCCCCCChHHHH
Q psy13765        241 MFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFV  283 (606)
Q Consensus       241 ~~D~v~~L~~G~~~~~G~~~~~~~~f~~~g~~~~~~~~~ad~~  283 (606)
                      .+|||++|++|+++..|+|+++..        .|.+....+|+
T Consensus       202 VadrviFmd~G~iie~g~p~~~f~--------~p~~~R~~~FL  236 (240)
T COG1126         202 VADRVIFMDQGKIIEEGPPEEFFD--------NPKSERTRQFL  236 (240)
T ss_pred             hhheEEEeeCCEEEEecCHHHHhc--------CCCCHHHHHHH
Confidence            999999999999999999988743        45544445554

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=5.8e-47  Score=380.07  Aligned_cols=223  Identities=24%  Similarity=0.419  Sum_probs=183.8

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Chh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NIN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~  104 (606)
                      .++++||++.|        +++.+|+|+||++++||+++|+||||||||||||+|+|+.+| .+|+|.++|++.   +.+
T Consensus         2 ~L~~~~ls~~y--------~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p-~~G~V~l~g~~i~~~~~k   72 (258)
T COG1120           2 MLEVENLSFGY--------GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP-KSGEVLLDGKDIASLSPK   72 (258)
T ss_pred             eeEEEEEEEEE--------CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCCchhhcCHH
Confidence            58899999997        467899999999999999999999999999999999999887 599999999864   457


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS  184 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~  184 (606)
                      ++.+.++||||.+...+.+||.|+... |.....+... ..|.-.++.+.-|.+.+.-.  -+.|.+...||||||||+.
T Consensus        73 elAk~ia~vpQ~~~~~~~~tV~d~V~~-GR~p~~~~~~-~~~~~D~~~v~~aL~~~~~~--~la~r~~~~LSGGerQrv~  148 (258)
T COG1120          73 ELAKKLAYVPQSPSAPFGLTVYELVLL-GRYPHLGLFG-RPSKEDEEIVEEALELLGLE--HLADRPVDELSGGERQRVL  148 (258)
T ss_pred             HHhhhEEEeccCCCCCCCcEEeehHhh-cCCccccccc-CCCHhHHHHHHHHHHHhCcH--HHhcCcccccChhHHHHHH
Confidence            788999999999988888998776543 4333222221 33444444444344333321  2567778888888888888


Q ss_pred             HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765        185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                      |||||+++|++|+||||||.||...+.+++++++++++ +|+|||+++||++. ..++||++++|++|+++..|+|++++
T Consensus       149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~G~i~a~G~p~evl  227 (258)
T COG1120         149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKDGKIVAQGTPEEVL  227 (258)
T ss_pred             HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEECCeEEeecCcchhc
Confidence            88888999999999999999999999999999999996 59999999999985 67999999999999999999998876


Q ss_pred             H
Q psy13765        264 N  264 (606)
Q Consensus       264 ~  264 (606)
                      .
T Consensus       228 T  228 (258)
T COG1120         228 T  228 (258)
T ss_pred             C
Confidence            3

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.8e-46  Score=374.20  Aligned_cols=202  Identities=28%  Similarity=0.484  Sum_probs=171.0

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-----
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-----  102 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~-----  102 (606)
                      .|+++||++.|..+   +.+...+|+|||++|++||+++|+|.||||||||++++.++..| .+|+|.+||.+..     
T Consensus         1 mI~l~~vsK~~~~~---~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~P-tsG~v~v~G~di~~l~~~   76 (339)
T COG1135           1 MIELENVSKTFGQT---GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP-TSGSVFVDGQDLTALSEA   76 (339)
T ss_pred             CeEEEeeeeeeccC---CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCC-CCceEEEcCEecccCChH
Confidence            37899999998542   12345799999999999999999999999999999999999887 5999999996532     


Q ss_pred             -hhhhcccEEEEccCCCCCCCCcH----------------------HHHHHHcCCccccCCccccCChHHHHHHHHHHHH
Q psy13765        103 -INAFRRVSCYIQQDDRLQPLLTI----------------------ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALEL  159 (606)
Q Consensus       103 -~~~~~~~~~yv~Q~~~l~~~ltv----------------------~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L  159 (606)
                       ...+|+.||++||+..|....||                      .++++.+||.+..++++.+|||||||||+|||||
T Consensus        77 ~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARAL  156 (339)
T COG1135          77 ELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARAL  156 (339)
T ss_pred             HHHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHH
Confidence             35678999999999999998887                      3455566666666666666666666666655555


Q ss_pred             hcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHH
Q psy13765        160 INNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATL  238 (606)
Q Consensus       160 ~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i  238 (606)
                      +                              .+|+||++|||||+|||.+...|+++|+++.++ |.||+++||+++ -+
T Consensus       157 a------------------------------~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vv  205 (339)
T COG1135         157 A------------------------------NNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VV  205 (339)
T ss_pred             h------------------------------cCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HH
Confidence            4                              559999999999999999999999999999876 999999999987 58


Q ss_pred             HhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        239 FQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       239 ~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      .++||||.+|++|++++.|+..++..
T Consensus       206 k~ic~rVavm~~G~lvE~G~v~~vF~  231 (339)
T COG1135         206 KRICDRVAVLDQGRLVEEGTVSEVFA  231 (339)
T ss_pred             HHHhhhheEeeCCEEEEeccHHHhhc
Confidence            89999999999999999999988753

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=9.9e-46  Score=369.42  Aligned_cols=223  Identities=26%  Similarity=0.406  Sum_probs=178.4

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF  106 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~  106 (606)
                      ..|+++|++++|.        .+++|+|||+++++|++++|+||||||||||+|+|.|+++| .+|+|.++|++.....-
T Consensus         3 ~~i~v~nl~v~y~--------~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p-~~G~i~~~g~~~~~~~~   73 (254)
T COG1121           3 PMIEVENLTVSYG--------NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP-SSGEIKIFGKPVRKRRK   73 (254)
T ss_pred             cEEEEeeeEEEEC--------CEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC-CcceEEEcccccccccc
Confidence            4689999999983        22699999999999999999999999999999999998887 59999999987654333


Q ss_pred             cccEEEEccCCCCC--CCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765        107 RRVSCYIQQDDRLQ--PLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS  184 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~--~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~  184 (606)
                      +..||||||...+.  .-+||++++.. |.... ....+.++..+++++.-|.+.+.--  -+.|.+.+.|||||+||+-
T Consensus        74 ~~~IgYVPQ~~~~d~~fP~tV~d~V~~-g~~~~-~g~~~~~~~~d~~~v~~aL~~Vgm~--~~~~r~i~~LSGGQ~QRV~  149 (254)
T COG1121          74 RLRIGYVPQKSSVDRSFPITVKDVVLL-GRYGK-KGWFRRLNKKDKEKVDEALERVGME--DLRDRQIGELSGGQKQRVL  149 (254)
T ss_pred             CCeEEEcCcccccCCCCCcCHHHHHHc-cCccc-ccccccccHHHHHHHHHHHHHcCch--hhhCCcccccCcHHHHHHH
Confidence            57899999965332  22578776654 21111 1112335666667666555554432  2567777788888888888


Q ss_pred             HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      |||||+++|++|+|||||+|+|+.++..++++|++++++|+||++++||+. .+.+.||+|+.|+ +++++.|+++++.+
T Consensus       150 lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln-~~~~~~G~~~~~~~  227 (254)
T COG1121         150 LARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN-RHLIASGPPEEVLT  227 (254)
T ss_pred             HHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc-CeeEeccChhhccC
Confidence            888888889999999999999999999999999999999999999999988 5789999999995 67899999988754

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=7.3e-46  Score=362.87  Aligned_cols=197  Identities=25%  Similarity=0.494  Sum_probs=171.7

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Chh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NIN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~  104 (606)
                      .|+++||+++|        +++.+++|+|++|++||++.++|||||||||+||+|.++..| .+|+|++||++.   +..
T Consensus         1 MI~~~nvsk~y--------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep-t~G~I~i~g~~i~~~d~~   71 (309)
T COG1125           1 MIEFENVSKRY--------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP-TSGEILIDGEDISDLDPV   71 (309)
T ss_pred             Cceeeeeehhc--------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC-CCceEEECCeecccCCHH
Confidence            37899999987        467899999999999999999999999999999999999887 599999999865   356


Q ss_pred             hhcccEEEEccCCCCCCCCcH----------------------HHHHHHcCCcc--ccCCccccCChHHHHHHHHHHHHh
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTI----------------------ENVMSLLGLDE--SQNTRSSQLSGGQKKRLSIALELI  160 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv----------------------~~~l~~~gl~~--~~~~~~~~lSgGqrqRv~ia~~L~  160 (606)
                      ++|+.+|||-|...|||++||                      +|+++.+||+.  ..++++.+|||||+|||.+||||+
T Consensus        72 ~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALA  151 (309)
T COG1125          72 ELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALA  151 (309)
T ss_pred             HHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHh
Confidence            789999999999999999998                      44555666653  566666666666666666555555


Q ss_pred             cCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHH
Q psy13765        161 NNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLF  239 (606)
Q Consensus       161 ~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~  239 (606)
                                                    .+|++|++|||+++|||-++.++.+.++++.++ |+|||++|||.+ +.+
T Consensus       152 ------------------------------adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~  200 (309)
T COG1125         152 ------------------------------ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EAL  200 (309)
T ss_pred             ------------------------------cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHH
Confidence                                          459999999999999999999999999999886 999999999987 567


Q ss_pred             hhcceeeeecCCcEEEEcChhHHHH
Q psy13765        240 QMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       240 ~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      +++|||.+|++|+++..++|+++..
T Consensus       201 kLadri~vm~~G~i~Q~~~P~~il~  225 (309)
T COG1125         201 KLADRIAVMDAGEIVQYDTPDEILA  225 (309)
T ss_pred             hhhceEEEecCCeEEEeCCHHHHHh
Confidence            9999999999999999999999865

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=2e-45  Score=381.65  Aligned_cols=223  Identities=28%  Similarity=0.460  Sum_probs=181.9

Q ss_pred             EEEEEeeEEEEecCCccccc-ccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh--h
Q psy13765         28 EIKFKDLTYTVSTGLGFKQE-PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--N  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--~  104 (606)
                      .++++||+++|        + .+.+|+||||++++||++|++||||||||||+|+|+|+..| .+|+|.++|.+...  .
T Consensus         4 ~i~~~~l~k~~--------~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p-~~G~i~i~G~~~~~~~~   74 (293)
T COG1131           4 VIEVRNLTKKY--------GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP-TSGEILVLGYDVVKEPA   74 (293)
T ss_pred             eeeecceEEEe--------CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEEcCEeCccCHH
Confidence            57889999997        4 47899999999999999999999999999999999999887 59999999986543  5


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCCh-HHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSG-GQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL  183 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSg-GqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl  183 (606)
                      +.++.+||++|++.+++.+|+.|.++.+.--       ...+. -.++|+.-..+.+.-++  ..+.+...+|+||||||
T Consensus        75 ~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l-------~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~lS~G~kqrl  145 (293)
T COG1131          75 KVRRRIGYVPQEPSLYPELTVRENLEFFARL-------YGLSKEEAEERIEELLELFGLED--KANKKVRTLSGGMKQRL  145 (293)
T ss_pred             HHHhheEEEccCCCCCccccHHHHHHHHHHH-------hCCChhHHHHHHHHHHHHcCCch--hhCcchhhcCHHHHHHH
Confidence            7788999999999999999997777653211       11111 12334444444444333  12566667777777777


Q ss_pred             HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765        184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQG-RTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL  262 (606)
Q Consensus       184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g-~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~  262 (606)
                      .||+||+++|+++||||||+||||.++.++.++|++++++| +||+++||+++ ++..+||+|++|++|++++.|+++++
T Consensus       146 ~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~l  224 (293)
T COG1131         146 SIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEEL  224 (293)
T ss_pred             HHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence            77777777899999999999999999999999999999987 89999999987 57889999999999999999999998


Q ss_pred             HHHHHhC
Q psy13765        263 VNYLSSV  269 (606)
Q Consensus       263 ~~~f~~~  269 (606)
                      ...+...
T Consensus       225 ~~~~~~~  231 (293)
T COG1131         225 KEKFGGK  231 (293)
T ss_pred             HHhhccC
Confidence            7765543

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.5e-45  Score=358.19  Aligned_cols=226  Identities=30%  Similarity=0.463  Sum_probs=183.3

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC----
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN----  102 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~----  102 (606)
                      ..|+++||++.|+       +++++|+|||++|++||+++|+|||||||||||++|+|+..+ .+|+|.+||.+..    
T Consensus         2 ~~i~~~nl~k~yp-------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~-t~G~i~~~g~~i~~~~~   73 (258)
T COG3638           2 MMIEVKNLSKTYP-------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP-TSGEILFNGVQITKLKG   73 (258)
T ss_pred             ceEEEeeeeeecC-------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCC-CcceEEecccchhccch
Confidence            4699999999985       457899999999999999999999999999999999998776 5999999996432    


Q ss_pred             --hhhhcccEEEEccCCCCCCCCcH-HHHHH-HcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCc
Q psy13765        103 --INAFRRVSCYIQQDDRLQPLLTI-ENVMS-LLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPN  177 (606)
Q Consensus       103 --~~~~~~~~~yv~Q~~~l~~~ltv-~~~l~-~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~  177 (606)
                        .+++|+.+||++|++.+.+.++| ++++. .+|-........+-+|.-||++.-=|.+   +-+++ ..-.+...|||
T Consensus        74 k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLe---rvgi~~~A~qra~~LSG  150 (258)
T COG3638          74 KELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALE---RVGILDKAYQRASTLSG  150 (258)
T ss_pred             HHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHH---HcCcHHHHHHHhccCCc
Confidence              35678899999999999999998 44432 2333333333344467777665433322   22222 22345667888


Q ss_pred             hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcEEEE
Q psy13765        178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ  256 (606)
Q Consensus       178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~  256 (606)
                      ||+|||+|||||+++|++++.|||++.|||.++..+|+.|+++++ +|.|||++.||.+. +.++|||++-|++|+++|+
T Consensus       151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~~G~ivfD  229 (258)
T COG3638         151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLKAGRIVFD  229 (258)
T ss_pred             chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEecCCcEEEe
Confidence            888888888888889999999999999999999999999999987 59999999999874 6799999999999999999


Q ss_pred             cChhHHHH
Q psy13765        257 GATDQLVN  264 (606)
Q Consensus       257 G~~~~~~~  264 (606)
                      |+++++.+
T Consensus       230 g~~~el~~  237 (258)
T COG3638         230 GPASELTD  237 (258)
T ss_pred             CChhhhhH
Confidence            99988654

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=4.2e-45  Score=355.99  Aligned_cols=199  Identities=29%  Similarity=0.498  Sum_probs=173.9

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---  102 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---  102 (606)
                      ...|++++|++++        +.+.+++|||++|++||+++||||||+|||||||+|.|+.+| .+|+|.++|++..   
T Consensus         6 ~~~I~vr~v~~~f--------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P-~~GeI~i~G~~i~~ls   76 (263)
T COG1127           6 EPLIEVRGVTKSF--------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP-DKGEILIDGEDIPQLS   76 (263)
T ss_pred             cceEEEeeeeeec--------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC-CCCeEEEcCcchhccC
Confidence            4679999999986        678999999999999999999999999999999999999987 5999999998642   


Q ss_pred             ---hhhhcccEEEEccCCCCCCCCcHHHH-----------------------HHHcCCccc-cCCccccCChHHHHHHHH
Q psy13765        103 ---INAFRRVSCYIQQDDRLQPLLTIENV-----------------------MSLLGLDES-QNTRSSQLSGGQKKRLSI  155 (606)
Q Consensus       103 ---~~~~~~~~~yv~Q~~~l~~~ltv~~~-----------------------l~~~gl~~~-~~~~~~~lSgGqrqRv~i  155 (606)
                         ..+.++++|++||+-.||..+||.|.                       ++.+||... .+..+.+|||||+||+++
T Consensus        77 ~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaL  156 (263)
T COG1127          77 EEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVAL  156 (263)
T ss_pred             HHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHH
Confidence               23567899999999999999998322                       344577666 677777778887777776


Q ss_pred             HHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCC
Q psy13765        156 ALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQP  234 (606)
Q Consensus       156 a~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~  234 (606)
                      |||++.+                              |++||+||||+||||.++..+.+++++++++ |.|++++|||.
T Consensus       157 ARAiald------------------------------Pell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl  206 (263)
T COG1127         157 ARAIALD------------------------------PELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL  206 (263)
T ss_pred             HHHHhcC------------------------------CCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh
Confidence            6555555                              9999999999999999999999999999986 99999999998


Q ss_pred             chHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        235 SATLFQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       235 ~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      . +++..|||+++|.+|+++..|+++++.+
T Consensus       207 ~-s~~~i~Drv~~L~~gkv~~~Gt~~el~~  235 (263)
T COG1127         207 D-SLLTIADRVAVLADGKVIAEGTPEELLA  235 (263)
T ss_pred             H-HHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence            7 5889999999999999999999999865

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=1.6e-44  Score=355.84  Aligned_cols=209  Identities=32%  Similarity=0.530  Sum_probs=160.2

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC------
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN------  102 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~------  102 (606)
                      ++++||++.|..+    .....+|++||++|++||+++|+||||||||||||+|.|+..| .+|+|.++|++..      
T Consensus         2 i~~~~v~k~y~~~----~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p-t~G~v~i~g~d~~~l~~~~   76 (226)
T COG1136           2 IELKNVSKIYGLG----GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP-TSGEVLINGKDLTKLSEKE   76 (226)
T ss_pred             cEEeeeEEEeccC----CcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-CCceEEECCEEcCcCCHHH
Confidence            5689999988543    1235799999999999999999999999999999999999887 6999999997543      


Q ss_pred             hhhhc-ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc--ccCCCCCCCCchh
Q psy13765        103 INAFR-RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM--FLDEPTTSNPNDQ  179 (606)
Q Consensus       103 ~~~~~-~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~--~~de~~~~~s~g~  179 (606)
                      ...+| +.+|||+|+..|.|.+|+.|.+..--       .....+.+++++.  +.+|+..-.+-  ..+.++..|||||
T Consensus        77 ~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl-------~~~~~~~~~~~~~--~~~l~~~lgl~~~~~~~~p~eLSGGq  147 (226)
T COG1136          77 LAKLRRKKIGFVFQNFNLLPDLTVLENVELPL-------LIAGKSAGRRKRA--AEELLEVLGLEDRLLKKKPSELSGGQ  147 (226)
T ss_pred             HHHHHHHhEEEECccCCCCCCCCHHHHHHhHH-------HHcCCChhHHHHH--HHHHHHhcCChhhhccCCchhcCHHH
Confidence            13344 56999999999999999965544200       0111222222221  22222222221  2225666677777


Q ss_pred             hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765        180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQC  253 (606)
Q Consensus       180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~  253 (606)
                      ||||+|||||+.+|++|+.||||.+||+.++.++++++++++++ |+|||++|||+.  +...|||++.|++|++
T Consensus       148 qQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr~i~l~dG~~  220 (226)
T COG1136         148 QQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADRVIELKDGKI  220 (226)
T ss_pred             HHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCEEEEEeCCee
Confidence            77777777777789999999999999999999999999999875 999999999975  5689999999999983

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.7e-44  Score=353.80  Aligned_cols=182  Identities=27%  Similarity=0.482  Sum_probs=155.5

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhc
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR  107 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~  107 (606)
                      .+++++++++|        +...+|+|+|++|++||+++|+||||||||||||+|+|+.++ .+|+|.++|++.  ..-.
T Consensus         3 ~l~i~~v~~~f--------~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p-~~G~V~~~g~~v--~~p~   71 (248)
T COG1116           3 LLEIEGVSKSF--------GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP-TSGEVLLDGRPV--TGPG   71 (248)
T ss_pred             eEEEEeeEEEe--------CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCccc--CCCC
Confidence            58899999987        347899999999999999999999999999999999999887 599999999876  3446


Q ss_pred             ccEEEEccCCCCCCCCcH----------------------HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc
Q psy13765        108 RVSCYIQQDDRLQPLLTI----------------------ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV  165 (606)
Q Consensus       108 ~~~~yv~Q~~~l~~~ltv----------------------~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~  165 (606)
                      ..++||||++.++|.+||                      ++.++.+||.+..++++++|||||||||+|||||+.    
T Consensus        72 ~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~----  147 (248)
T COG1116          72 PDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALAT----  147 (248)
T ss_pred             CCEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhc----
Confidence            789999999999999997                      344555666666666666666666666665555554    


Q ss_pred             cccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcce
Q psy13765        166 MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQ  244 (606)
Q Consensus       166 ~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~  244 (606)
                                                +|++|+||||++.||+.|+..+.+.|.++.+ +++||+++|||.++ ...++||
T Consensus       148 --------------------------~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~E-Av~LsdR  200 (248)
T COG1116         148 --------------------------RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDE-AVYLADR  200 (248)
T ss_pred             --------------------------CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH-HHhhhCE
Confidence                                      4999999999999999999999999999876 48999999999885 5689999


Q ss_pred             eeeecCC
Q psy13765        245 VYLLSGG  251 (606)
Q Consensus       245 v~~L~~G  251 (606)
                      |++|+++
T Consensus       201 ivvl~~~  207 (248)
T COG1116         201 VVVLSNR  207 (248)
T ss_pred             EEEecCC
Confidence            9999984

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.3e-44  Score=349.31  Aligned_cols=223  Identities=29%  Similarity=0.452  Sum_probs=182.7

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---  103 (606)
                      ..++++||++.|+.+.    ...++|+|||++|++||+++|+|+||||||||.++|+|+.++ .+|+|.++|++...   
T Consensus         2 ~~l~v~nl~~~y~~~~----~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p-~~G~I~~~G~~~~~~~~   76 (252)
T COG1124           2 TLLSVRNLSIVYGGGK----FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP-SSGSILLDGKPLAPKKR   76 (252)
T ss_pred             ceEEEeceEEEecCCc----chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC-CCceEEECCcccCcccc
Confidence            3689999999985431    122699999999999999999999999999999999999887 59999999976543   


Q ss_pred             -hhhcccEEEEccCC--CCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhh
Q psy13765        104 -NAFRRVSCYIQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQK  180 (606)
Q Consensus       104 -~~~~~~~~yv~Q~~--~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~  180 (606)
                       +.+++.+.+||||+  .+.|..||++++..- +      .+++++-+|++ +.-+...+.-|+- .+|.-+..+||||+
T Consensus        77 ~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Ep-l------~~~~~~~~~~~-i~~~L~~VgL~~~-~l~R~P~eLSGGQ~  147 (252)
T COG1124          77 AKAFYRPVQMVFQDPYSSLNPRRTVGRILSEP-L------RPHGLSKSQQR-IAELLDQVGLPPS-FLDRRPHELSGGQR  147 (252)
T ss_pred             chhhccceeEEecCCccccCcchhHHHHHhhh-h------ccCCccHHHHH-HHHHHHHcCCCHH-HHhcCchhcChhHH
Confidence             24678899999998  578999998877641 1      12556777766 3323333333322 34555555888888


Q ss_pred             hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765        181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT  259 (606)
Q Consensus       181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~  259 (606)
                      ||++|||||..+|++|++|||||+||+..+.+|+++|.+++++ |.|.|+++||.. .+..+|||+++|++|++++.++.
T Consensus       148 QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~G~ivE~~~~  226 (252)
T COG1124         148 QRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDNGQIVEIGPT  226 (252)
T ss_pred             HHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeCCeEEEeech
Confidence            8888999999999999999999999999999999999999875 899999999976 68899999999999999999999


Q ss_pred             hHHHH
Q psy13765        260 DQLVN  264 (606)
Q Consensus       260 ~~~~~  264 (606)
                      +++.+
T Consensus       227 ~~l~~  231 (252)
T COG1124         227 EELLS  231 (252)
T ss_pred             hhhhc
Confidence            98865

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=6.3e-44  Score=372.80  Aligned_cols=232  Identities=25%  Similarity=0.444  Sum_probs=192.9

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-hhh
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-INA  105 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~-~~~  105 (606)
                      ..++++||+++|        +...+++|+|++|++||+++|+|||||||||||++|||+..| .+|+|.++|+++. ..-
T Consensus         4 ~~l~i~~v~k~y--------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p-~~G~I~l~G~~i~~lpp   74 (352)
T COG3842           4 PALEIRNVSKSF--------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP-SSGEILLDGEDITDVPP   74 (352)
T ss_pred             ceEEEEeeeeec--------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCCCCh
Confidence            468999999997        467899999999999999999999999999999999999887 5999999999764 345


Q ss_pred             hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS  184 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~  184 (606)
                      .+|.+|+|||+-.|||++||.+.+. +||.-     .+..... .++||.-+.+++.-.+  ..+..+..|||||||||+
T Consensus        75 ~kR~ig~VFQ~YALFPHltV~~NVa-fGLk~-----~~~~~~~~i~~rv~e~L~lV~L~~--~~~R~p~qLSGGQqQRVA  146 (352)
T COG3842          75 EKRPIGMVFQSYALFPHMTVEENVA-FGLKV-----RKKLKKAEIKARVEEALELVGLEG--FADRKPHQLSGGQQQRVA  146 (352)
T ss_pred             hhcccceeecCcccCCCCcHHHHhh-hhhhh-----cCCCCHHHHHHHHHHHHHHcCchh--hhhhChhhhChHHHHHHH
Confidence            5789999999999999999966543 35541     1112333 3567777777776554  566777778888888888


Q ss_pred             HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765        185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                      +||||+.+|++|+||||.|+||..-+.++..-++++.++ |.|.|++|||.. +...++|||.+|++|++...|+|+++.
T Consensus       147 LARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~G~I~Q~gtP~eiY  225 (352)
T COG3842         147 LARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMNDGRIEQVGTPEEIY  225 (352)
T ss_pred             HHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccCCceeecCCHHHHh
Confidence            888888889999999999999999999999999999875 999999999976 567999999999999999999999984


Q ss_pred             HHHHhCCCCCCCCCChHHHHH
Q psy13765        264 NYLSSVNLPCPKYHNPADFVI  284 (606)
Q Consensus       264 ~~f~~~g~~~~~~~~~ad~~~  284 (606)
                      .        .|...-.|||+-
T Consensus       226 ~--------~P~~~fVA~FiG  238 (352)
T COG3842         226 E--------RPATRFVADFIG  238 (352)
T ss_pred             h--------CcchHHHHHHhC
Confidence            3        455555566654

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=3.9e-43  Score=367.17  Aligned_cols=218  Identities=26%  Similarity=0.392  Sum_probs=182.8

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh--h
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--N  104 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--~  104 (606)
                      ..++++||+++|        +++.+|+|||++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...  .
T Consensus         6 ~~i~i~~l~k~~--------~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p-~~G~v~i~G~~~~~~~~   76 (306)
T PRK13537          6 APIDFRNVEKRY--------GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP-DAGSISLCGEPVPSRAR   76 (306)
T ss_pred             ceEEEEeEEEEE--------CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEecccchH
Confidence            368999999997        346799999999999999999999999999999999999877 59999999987532  3


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhH
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKKR  182 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~kr  182 (606)
                      ..++.+||++|++.+++.+|+.+.+...+..       .+.+..+ ++|+.   +++..-++- ..+.+...+|+|||||
T Consensus        77 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~G~~qr  146 (306)
T PRK13537         77 HARQRVGVVPQFDNLDPDFTVRENLLVFGRY-------FGLSAAAARALVP---PLLEFAKLENKADAKVGELSGGMKRR  146 (306)
T ss_pred             HHHhcEEEEeccCcCCCCCcHHHHHHHHHHH-------cCCCHHHHHHHHH---HHHHHcCCchHhcCchhhCCHHHHHH
Confidence            4678899999999999999998887754321       1122222 23332   233322332 4678889999999999


Q ss_pred             HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765        183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL  262 (606)
Q Consensus       183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~  262 (606)
                      +.||+||+++|++|+|||||+|||+.++..+.++|++++++|+|||++||+++ ++.++||++++|++|++++.|+++++
T Consensus       147 l~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l  225 (306)
T PRK13537        147 LTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPHAL  225 (306)
T ss_pred             HHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence            99999999999999999999999999999999999999888999999999987 57899999999999999999999988


Q ss_pred             HH
Q psy13765        263 VN  264 (606)
Q Consensus       263 ~~  264 (606)
                      ..
T Consensus       226 ~~  227 (306)
T PRK13537        226 IE  227 (306)
T ss_pred             Hh
Confidence            64

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.7e-43  Score=367.64  Aligned_cols=198  Identities=28%  Similarity=0.494  Sum_probs=169.0

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hh
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NA  105 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~  105 (606)
                      ..|+++||++.|.        +..+|+|+|++|++||+++|+||||||||||||+|||+..+ .+|+|.++|++.+. .-
T Consensus         2 ~~i~l~~v~K~yg--------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~-~~G~I~i~g~~vt~l~P   72 (338)
T COG3839           2 AELELKNVRKSFG--------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP-TSGEILIDGRDVTDLPP   72 (338)
T ss_pred             cEEEEeeeEEEcC--------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCCCCh
Confidence            3689999999973        22299999999999999999999999999999999999887 59999999987653 34


Q ss_pred             hcccEEEEccCCCCCCCCcHH----------------------HHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCC
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIE----------------------NVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNP  163 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~----------------------~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~  163 (606)
                      .+|.+++|||+..++|.+||.                      ++.+.+++++..++++.+|||||||||++||||+.+ 
T Consensus        73 ~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~-  151 (338)
T COG3839          73 EKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRK-  151 (338)
T ss_pred             hHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcC-
Confidence            468899999999999999983                      445556666666666666666666666655555555 


Q ss_pred             cccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhc
Q psy13765        164 RVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMF  242 (606)
Q Consensus       164 ~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~  242 (606)
                                                   |+++++|||.|+||+..+..+...|+++.++ |.|+|.+|||.. ++..++
T Consensus       152 -----------------------------P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtla  201 (338)
T COG3839         152 -----------------------------PKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLA  201 (338)
T ss_pred             -----------------------------CCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhC
Confidence                                         9999999999999999999999999999876 899999999966 678999


Q ss_pred             ceeeeecCCcEEEEcChhHHHH
Q psy13765        243 DQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       243 D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      ||+.+|++|++...|+|.++.+
T Consensus       202 dri~Vm~~G~i~Q~g~p~ely~  223 (338)
T COG3839         202 DRIVVMNDGRIQQVGTPLELYE  223 (338)
T ss_pred             CEEEEEeCCeeeecCChHHHhh
Confidence            9999999999999999999864

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.8e-43  Score=354.84  Aligned_cols=221  Identities=24%  Similarity=0.419  Sum_probs=177.3

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCc---cCCh
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH---SRNI  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~---~~~~  103 (606)
                      ++|+++|+++.+        +...+++|||++|+.||++|++|||||||||||++|+|+..| ..|.|.+||+   +.+.
T Consensus         1 m~i~i~~~~~~~--------~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p-~~G~I~~~~~~l~D~~~   71 (345)
T COG1118           1 MSIRINNVKKRF--------GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP-DAGRIRLNGRVLFDVSN   71 (345)
T ss_pred             Cceeehhhhhhc--------ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC-CCceEEECCEeccchhc
Confidence            467888988876        456799999999999999999999999999999999999887 5999999998   4432


Q ss_pred             -hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCC-hHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhh
Q psy13765        104 -NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLS-GGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKK  181 (606)
Q Consensus       104 -~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lS-gGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~k  181 (606)
                       ....|+||||+|+..+|+.+||.+.+. +||.-...    ..| .-.|.|+.--..++.-.  -+.|..+..|||||||
T Consensus        72 ~~~~~R~VGfvFQ~YALF~HmtVa~NIA-FGl~~~~~----~p~~~~~r~rv~elL~lvqL~--~la~ryP~QLSGGQrQ  144 (345)
T COG1118          72 LAVRDRKVGFVFQHYALFPHMTVADNIA-FGLKVRKE----RPSEAEIRARVEELLRLVQLE--GLADRYPAQLSGGQRQ  144 (345)
T ss_pred             cchhhcceeEEEechhhcccchHHhhhh-hccccccc----CCChhhHHHHHHHHHHHhccc--chhhcCchhcChHHHH
Confidence             334578999999999999999854432 34433211    122 22344554222222211  1456677777777777


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD  260 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~  260 (606)
                      ||++||||+.+|++|+||||+++||..-+.++.+.|+++.++ |.|++++|||+. +++++||||++|++|+|...|+++
T Consensus       145 RVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg~p~  223 (345)
T COG1118         145 RVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPD  223 (345)
T ss_pred             HHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecCCeeeeeCCHH
Confidence            777888888889999999999999999999999999999886 999999999976 688999999999999999999999


Q ss_pred             HHHH
Q psy13765        261 QLVN  264 (606)
Q Consensus       261 ~~~~  264 (606)
                      |+.+
T Consensus       224 ev~~  227 (345)
T COG1118         224 EVYD  227 (345)
T ss_pred             HHhc
Confidence            9854

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=8.3e-43  Score=351.30  Aligned_cols=216  Identities=27%  Similarity=0.407  Sum_probs=175.7

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-----
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-----  103 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-----  103 (606)
                      |+++||+++|+        ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|.+...     
T Consensus         1 l~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~~   71 (235)
T cd03261           1 IELRGLTKSFG--------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP-DSGEVLIDGEDISGLSEAE   71 (235)
T ss_pred             CeEEEEEEEEC--------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEccccChhh
Confidence            46899999872        35699999999999999999999999999999999999876 59999999976431     


Q ss_pred             -hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhh
Q psy13765        104 -NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQK  180 (606)
Q Consensus       104 -~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~  180 (606)
                       ..+++.++||+|++.+++.+|+.+.+... ...  .   ...+..+ ++++.   +++..-.+- ..|.+...+|||||
T Consensus        72 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~-~~~--~---~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LSgG~~  142 (235)
T cd03261          72 LYRLRRRMGMLFQSGALFDSLTVFENVAFP-LRE--H---TRLSEEEIREIVL---EKLEAVGLRGAEDLYPAELSGGMK  142 (235)
T ss_pred             HHHHhcceEEEccCcccCCCCcHHHHHHHH-Hhh--c---cCCCHHHHHHHHH---HHHHHcCCchhhcCChhhCCHHHH
Confidence             34567899999999999999997766432 110  0   0112222 23332   333332331 45888899999999


Q ss_pred             hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765        181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT  259 (606)
Q Consensus       181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~  259 (606)
                      |||.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+.++||++++|++|++++.|++
T Consensus       143 qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~  221 (235)
T cd03261         143 KRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTP  221 (235)
T ss_pred             HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCH
Confidence            9999999999999999999999999999999999999999874 899999999987 57789999999999999999998


Q ss_pred             hHHH
Q psy13765        260 DQLV  263 (606)
Q Consensus       260 ~~~~  263 (606)
                      +++.
T Consensus       222 ~~~~  225 (235)
T cd03261         222 EELR  225 (235)
T ss_pred             HHHc
Confidence            7753

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=9.3e-43  Score=368.44  Aligned_cols=220  Identities=26%  Similarity=0.407  Sum_probs=178.4

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---h-
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---N-  104 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~-  104 (606)
                      |+++||+++|+.+    .+.+.+|+|||+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...   . 
T Consensus         2 I~~~~lsk~y~~~----~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p-~~G~I~i~G~~i~~~~~~~   76 (343)
T TIGR02314         2 IKLSNITKVFHQG----TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TSGSVIVDGQDLTTLSNSE   76 (343)
T ss_pred             EEEEEEEEEECCC----CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEECCcCCHHH
Confidence            7899999998421    1235799999999999999999999999999999999999877 59999999986532   2 


Q ss_pred             --hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhh
Q psy13765        105 --AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKK  181 (606)
Q Consensus       105 --~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~k  181 (606)
                        ..++.+||++|+..+++..|+.+.+.. ++.      ..+.+..+ ++|+.-+.+.+.-.+  ..|.+...|||||||
T Consensus        77 l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~-~~~------~~~~~~~~~~~~v~e~l~~vgL~~--~~~~~~~~LSgGqkQ  147 (343)
T TIGR02314        77 LTKARRQIGMIFQHFNLLSSRTVFGNVAL-PLE------LDNTPKDEIKRKVTELLALVGLGD--KHDSYPSNLSGGQKQ  147 (343)
T ss_pred             HHHHhcCEEEEECCccccccCcHHHHHHH-HHH------HcCCCHHHHHHHHHHHHHHcCCch--hhhCChhhCCHHHHH
Confidence              346789999999999999999665543 111      01122222 334433333332211  468888899999999


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD  260 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~  260 (606)
                      ||.|||||+++|++|+|||||+|||+.++..++++|++++++ |.|||++||+++ .+.++||++++|++|++++.|+++
T Consensus       148 RV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~G~iv~~g~~~  226 (343)
T TIGR02314       148 RVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQGTVS  226 (343)
T ss_pred             HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence            999999999999999999999999999999999999999875 999999999976 577899999999999999999998


Q ss_pred             HHH
Q psy13765        261 QLV  263 (606)
Q Consensus       261 ~~~  263 (606)
                      ++.
T Consensus       227 ~v~  229 (343)
T TIGR02314       227 EIF  229 (343)
T ss_pred             HHH
Confidence            874

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.2e-43  Score=334.68  Aligned_cols=214  Identities=22%  Similarity=0.368  Sum_probs=175.9

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC--Chhhh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR--NINAF  106 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~--~~~~~  106 (606)
                      |++++++++|+       ...++++||||+++.||+++|+|||||||||+|++|++++.| .+|+|.+||.+.  ++...
T Consensus         2 l~v~~l~K~y~-------~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P-~~G~v~idg~d~~~~p~~v   73 (245)
T COG4555           2 LEVTDLTKSYG-------SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP-DSGKVTIDGVDTVRDPSFV   73 (245)
T ss_pred             eeeeehhhhcc-------CHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC-CCceEEEeecccccChHHH
Confidence            78899999874       234599999999999999999999999999999999999987 599999999764  45678


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHH----------------------HcCCccccCCccccCChHHHHHHHHHHHHhcCCc
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMS----------------------LLGLDESQNTRSSQLSGGQKKRLSIALELINNPR  164 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~----------------------~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~  164 (606)
                      |+++|.++.+..++..+|++|.+.                      .++|.++.|++++++|.|+||||+          
T Consensus        74 rr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~----------  143 (245)
T COG4555          74 RRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVA----------  143 (245)
T ss_pred             hhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHH----------
Confidence            999999998889999999865554                      445555555555556666555555          


Q ss_pred             ccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcce
Q psy13765        165 VMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQ  244 (606)
Q Consensus       165 ~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~  244 (606)
                                          |||||+++|++++|||||||||..+...+.+.+++++++|++||++||.++ ++.++||+
T Consensus       144 --------------------iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDr  202 (245)
T COG4555         144 --------------------IARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDR  202 (245)
T ss_pred             --------------------HHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhhe
Confidence                                555555559999999999999999999999999999999999999999976 68889999


Q ss_pred             eeeecCCcEEEEcChhHHHHHHHhCCCCCCCCCChHHHHHHHhcC
Q psy13765        245 VYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASG  289 (606)
Q Consensus       245 v~~L~~G~~~~~G~~~~~~~~f~~~g~~~~~~~~~ad~~~~~~~~  289 (606)
                      +++|++|++++.|+++++.+--        ...|+.+.+......
T Consensus       203 vivlh~Gevv~~gs~~~l~~r~--------~~~~le~~f~~~l~~  239 (245)
T COG4555         203 VIVLHKGEVVLEGSIEALDART--------VLRNLEEIFAFALKL  239 (245)
T ss_pred             EEEEecCcEEEcCCHHHHHHHH--------hhcCHHHHHHHhhcC
Confidence            9999999999999998876531        134666666555443

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=2.9e-42  Score=364.95  Aligned_cols=219  Identities=25%  Similarity=0.379  Sum_probs=183.4

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--h
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--I  103 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--~  103 (606)
                      ...|+++||+++|        +++.+|+||||+|++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+..  .
T Consensus        39 ~~~i~i~nl~k~y--------~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p-~~G~i~i~G~~~~~~~  109 (340)
T PRK13536         39 TVAIDLAGVSKSY--------GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP-DAGKITVLGVPVPARA  109 (340)
T ss_pred             ceeEEEEEEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-CceEEEECCEECCcch
Confidence            4569999999997        345799999999999999999999999999999999999877 5999999998753  2


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhh
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKK  181 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~k  181 (606)
                      ...++.+||++|++.+++.+|+.+.+...+...       +.+..+ ++++   .+++..-++- ..+.+...+|+||||
T Consensus       110 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~-------~~~~~~~~~~~---~~ll~~~~L~~~~~~~~~~LS~G~kq  179 (340)
T PRK13536        110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYF-------GMSTREIEAVI---PSLLEFARLESKADARVSDLSGGMKR  179 (340)
T ss_pred             HHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc-------CCCHHHHHHHH---HHHHHHcCCchhhCCChhhCCHHHHH
Confidence            345778999999999999999988776543110       122222 2233   2333332332 467888899999999


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ  261 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~  261 (606)
                      |+.||+||+++|++|+|||||+|||+.++..+.++|++++++|+|||++||+++ ++.++||++++|++|++++.|++++
T Consensus       180 rv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~G~i~~~g~~~~  258 (340)
T PRK13536        180 RLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEAGRKIAEGRPHA  258 (340)
T ss_pred             HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence            999999999999999999999999999999999999999888999999999987 5789999999999999999999998


Q ss_pred             HHH
Q psy13765        262 LVN  264 (606)
Q Consensus       262 ~~~  264 (606)
                      +..
T Consensus       259 l~~  261 (340)
T PRK13536        259 LID  261 (340)
T ss_pred             HHh
Confidence            865

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.3e-42  Score=347.67  Aligned_cols=219  Identities=29%  Similarity=0.495  Sum_probs=181.9

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC----h
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN----I  103 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~----~  103 (606)
                      .++++|++|+|+.      + +.+|+|+|+++++||.++|+||||||||||+++|+|+..| .+|+|.++|.+..    .
T Consensus         3 ~i~~~~l~~~y~~------~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p-~~G~v~~~g~~~~~~~~~   74 (235)
T COG1122           3 MIEAENLSFRYPG------R-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP-TSGEVLVDGLDTSSEKSL   74 (235)
T ss_pred             eEEEEEEEEEcCC------C-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC-CCCEEEECCeeccchhhH
Confidence            5789999999742      2 6899999999999999999999999999999999999887 5899999998744    5


Q ss_pred             hhhcccEEEEccCCCCC-CCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCcccccCCCCCCCCchhhh
Q psy13765        104 NAFRRVSCYIQQDDRLQ-PLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVMFLDEPTTSNPNDQKK  181 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~-~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~k  181 (606)
                      ..+++.+|||+|++..+ ..-||.+=+. +|+...      +++.. .++|+.-+.+++.-.+.  +|.++..|||||||
T Consensus        75 ~~~~~~vG~VfQnpd~q~~~~tV~~eva-fg~~n~------g~~~~e~~~rv~~~l~~vgl~~~--~~r~p~~LSGGqkq  145 (235)
T COG1122          75 LELRQKVGLVFQNPDDQLFGPTVEDEVA-FGLENL------GLPREEIEERVAEALELVGLEEL--LDRPPFNLSGGQKQ  145 (235)
T ss_pred             HHhhcceEEEEECcccccccCcHHHHHh-hchhhc------CCCHHHHHHHHHHHHHHcCchhh--ccCCccccCCccee
Confidence            67899999999998543 2345533222 233221      23332 46777777777665444  78888888888888


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD  260 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~  260 (606)
                      ||+||.+|+.+|++|+|||||||||+..+.++++.+++++++ |+|||++|||.. .+..++||+++|++|+++++|+|+
T Consensus       146 RvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~G~i~~~g~p~  224 (235)
T COG1122         146 RVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDDGKILADGDPA  224 (235)
T ss_pred             eHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEECCEEeecCCHH
Confidence            888999999999999999999999999999999999999987 799999999987 578899999999999999999998


Q ss_pred             HHHH
Q psy13765        261 QLVN  264 (606)
Q Consensus       261 ~~~~  264 (606)
                      ++.+
T Consensus       225 ~i~~  228 (235)
T COG1122         225 EIFN  228 (235)
T ss_pred             HHhh
Confidence            8765

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.2e-43  Score=334.64  Aligned_cols=234  Identities=26%  Similarity=0.393  Sum_probs=183.8

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccC
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSR  101 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~  101 (606)
                      ...++++||++.|        +.+++|+|||+.|++++++|+||||||||||||+++..+...    ..+|+|.++|+++
T Consensus         5 ~~~~~~~~l~~yY--------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni   76 (253)
T COG1117           5 IPAIEVRDLNLYY--------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNI   76 (253)
T ss_pred             cceeEecceeEEE--------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeec
Confidence            3568999999987        568899999999999999999999999999999999987432    2579999999853


Q ss_pred             -----ChhhhcccEEEEccCCCCCCCCcH-HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCC
Q psy13765        102 -----NINAFRRVSCYIQQDDRLQPLLTI-ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSN  175 (606)
Q Consensus       102 -----~~~~~~~~~~yv~Q~~~l~~~ltv-~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~  175 (606)
                           +..++|+.+|.|||.|..|| +++ +++...+.+....+....++=----|+.++--+.=.     -||++..+|
T Consensus        77 ~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-----rL~~sa~~L  150 (253)
T COG1117          77 YDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-----RLHKSALGL  150 (253)
T ss_pred             cCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-----HhhCCccCC
Confidence                 45678999999999999999 565 666544444333321110000000122232222211     367777889


Q ss_pred             CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765        176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY  255 (606)
Q Consensus       176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~  255 (606)
                      ||||||||.|||||+.+|+||+||||||+|||.+..+|-+++.+|++ .-|||++||++.. ..+..|+..++..|++++
T Consensus       151 SGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmqQ-AaRvSD~taFf~~G~LvE  228 (253)
T COG1117         151 SGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNMQQ-AARVSDYTAFFYLGELVE  228 (253)
T ss_pred             ChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHHH-HHHHhHhhhhhcccEEEE
Confidence            99999999999999999999999999999999999999999999984 6899999999875 679999999999999999


Q ss_pred             EcChhHHHHHHHhCCCCCCCCCChHHHH
Q psy13765        256 QGATDQLVNYLSSVNLPCPKYHNPADFV  283 (606)
Q Consensus       256 ~G~~~~~~~~f~~~g~~~~~~~~~ad~~  283 (606)
                      +|+++++..        .|......||+
T Consensus       229 ~g~T~~iF~--------~P~~~~TedYi  248 (253)
T COG1117         229 FGPTDKIFT--------NPKHKRTEDYI  248 (253)
T ss_pred             EcCHHhhhc--------CccHHHHHHHh
Confidence            999998843        46655556654

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.5e-42  Score=366.49  Aligned_cols=219  Identities=21%  Similarity=0.372  Sum_probs=181.1

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAF  106 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~  106 (606)
                      .|+++||+++|+       +++.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.+||++... ...
T Consensus         3 ~l~i~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p-~~G~I~~~g~~i~~~~~~   74 (356)
T PRK11650          3 GLKLQAVRKSYD-------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI-TSGEIWIGGRVVNELEPA   74 (356)
T ss_pred             EEEEEeEEEEeC-------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC-CceEEEECCEECCCCCHH
Confidence            489999999873       235799999999999999999999999999999999999876 59999999987532 233


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHH-HHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQK-KRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI  185 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqr-qRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I  185 (606)
                      ++.+|||+|++.++|.+||.+.+.. ++..      .+++..++ +|+.-+.+++.-.  -++|.+...|||||||||+|
T Consensus        75 ~r~ig~v~Q~~~lfp~~tv~eNi~~-~~~~------~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGq~QRval  145 (356)
T PRK11650         75 DRDIAMVFQNYALYPHMSVRENMAY-GLKI------RGMPKAEIEERVAEAARILELE--PLLDRKPRELSGGQRQRVAM  145 (356)
T ss_pred             HCCEEEEeCCccccCCCCHHHHHHh-HHhh------cCCCHHHHHHHHHHHHHHcCCh--hHhhCChhhCCHHHHHHHHH
Confidence            5789999999999999999776643 2211      12344332 4444333333222  15788888999999999999


Q ss_pred             HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      ||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++|||+. ++.+++|++++|++|+++..|+++++.+
T Consensus       146 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~G~i~~~g~~~~~~~  224 (356)
T PRK11650        146 GRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNGGVAEQIGTPVEVYE  224 (356)
T ss_pred             HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence            99999999999999999999999999999999999875 999999999976 5789999999999999999999998753

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=5.4e-42  Score=358.40  Aligned_cols=218  Identities=26%  Similarity=0.389  Sum_probs=180.1

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--hh
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--IN  104 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--~~  104 (606)
                      +.|+++||+++|        +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..  ..
T Consensus         3 ~~i~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~   73 (303)
T TIGR01288         3 VAIDLVGVSKSY--------GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP-DRGKITVLGEPVPSRAR   73 (303)
T ss_pred             cEEEEEeEEEEe--------CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECcccHH
Confidence            468999999987        235699999999999999999999999999999999999876 5999999998653  23


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhH
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKKR  182 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~kr  182 (606)
                      ..++.+||++|++.+++.+|+.+.+...+...       ..+..+ ++++.   +++..-.+- ..|.+...+|||||||
T Consensus        74 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-------~~~~~~~~~~~~---~ll~~~~l~~~~~~~~~~LSgG~~qr  143 (303)
T TIGR01288        74 LARVAIGVVPQFDNLDPEFTVRENLLVFGRYF-------GMSTREIEAVIP---SLLEFARLESKADVRVALLSGGMKRR  143 (303)
T ss_pred             HHhhcEEEEeccccCCcCCcHHHHHHHHHHHc-------CCCHHHHHHHHH---HHHHHCCChhHhcCchhhCCHHHHHH
Confidence            45678999999999999999977765432110       122211 22332   233322221 4678889999999999


Q ss_pred             HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765        183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL  262 (606)
Q Consensus       183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~  262 (606)
                      +.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.++||++++|++|++++.|+++++
T Consensus       144 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~  222 (303)
T TIGR01288       144 LTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHAL  222 (303)
T ss_pred             HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            99999999999999999999999999999999999999888999999999987 57789999999999999999999887


Q ss_pred             HH
Q psy13765        263 VN  264 (606)
Q Consensus       263 ~~  264 (606)
                      ..
T Consensus       223 ~~  224 (303)
T TIGR01288       223 ID  224 (303)
T ss_pred             Hh
Confidence            54

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.3e-42  Score=365.39  Aligned_cols=218  Identities=21%  Similarity=0.379  Sum_probs=181.8

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAF  106 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~  106 (606)
                      .|+++||+++|        +.+.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++... ...
T Consensus         4 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p-~~G~I~i~g~~~~~~~~~   74 (353)
T TIGR03265         4 YLSIDNIRKRF--------GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ-TAGTIYQGGRDITRLPPQ   74 (353)
T ss_pred             EEEEEEEEEEe--------CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC-CceEEEECCEECCCCCHH
Confidence            58999999987        345699999999999999999999999999999999999876 59999999987532 234


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI  185 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I  185 (606)
                      ++.+|||+|+..++|.+||.+.+.. ++..      ..++..+ ++|+.-+.+++.-.+  ++|.....|||||||||+|
T Consensus        75 ~r~ig~v~Q~~~lfp~~tv~eNi~~-~~~~------~~~~~~~~~~~~~~~l~~l~L~~--~~~~~~~~LSgGq~QRvaL  145 (353)
T TIGR03265        75 KRDYGIVFQSYALFPNLTVADNIAY-GLKN------RGMGRAEVAERVAELLDLVGLPG--SERKYPGQLSGGQQQRVAL  145 (353)
T ss_pred             HCCEEEEeCCcccCCCCcHHHHHHH-HHHh------cCCCHHHHHHHHHHHHHHcCCCc--hhhCChhhCCHHHHHHHHH
Confidence            6789999999999999999776643 2211      1234444 345544444443222  5688888899999999999


Q ss_pred             HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      ||||+.+|++++|||||+|||+.++.++.+.|+++.++ |.|+|++|||+. ++.+++|++++|++|+++..|+++++.+
T Consensus       146 ARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~~~~~  224 (353)
T TIGR03265       146 ARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQEIYR  224 (353)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999999999999999999999999999999875 999999999986 5789999999999999999999998864

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-42  Score=340.70  Aligned_cols=227  Identities=20%  Similarity=0.340  Sum_probs=192.3

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---  103 (606)
                      ..++++||++++        +.-.+++|||+++++||+++||||||||||||+|+|+|+++| .+|+|.++|+++..   
T Consensus         3 ~lL~v~~l~k~F--------GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P-~~G~v~~~G~~it~l~p   73 (250)
T COG0411           3 PLLEVRGLSKRF--------GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP-SSGTVIFRGRDITGLPP   73 (250)
T ss_pred             ceeeeccceeec--------CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccC-CCceEEECCcccCCCCH
Confidence            457899999986        678899999999999999999999999999999999999987 59999999987542   


Q ss_pred             -hhhcccEEEEccCCCCCCCCcHHHHHH-HcCCccccCCccccCC---hHHHHHHHHHHHHhcCCccc-ccCCCCCCCCc
Q psy13765        104 -NAFRRVSCYIQQDDRLQPLLTIENVMS-LLGLDESQNTRSSQLS---GGQKKRLSIALELINNPRVM-FLDEPTTSNPN  177 (606)
Q Consensus       104 -~~~~~~~~yv~Q~~~l~~~ltv~~~l~-~~gl~~~~~~~~~~lS---gGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~  177 (606)
                       +..+..++..||...+|+.+||.|.+. ....... -...-...   ..|++-.+-|.+++..-.+. ..|+|.++||+
T Consensus        74 ~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~-~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~Lsy  152 (250)
T COG0411          74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARLG-LSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSY  152 (250)
T ss_pred             HHHHhccceeecccccccCCCcHHHHHHHHhhhhhh-hhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCCh
Confidence             334567899999999999999954433 2211100 00001111   24667778888998887776 88999999999


Q ss_pred             hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEE
Q psy13765        178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ  256 (606)
Q Consensus       178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~  256 (606)
                      ||||||+|||||+++|++|+||||.+||.+..+.++.+.|++++++ |.||+++.||+. .++.+||||++|+.|+++.+
T Consensus       153 G~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~G~~IAe  231 (250)
T COG0411         153 GQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNYGEVIAE  231 (250)
T ss_pred             hHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccCCcCccc
Confidence            9999999999999999999999999999999999999999999985 799999999987 58899999999999999999


Q ss_pred             cChhHHHH
Q psy13765        257 GATDQLVN  264 (606)
Q Consensus       257 G~~~~~~~  264 (606)
                      |+|+++.+
T Consensus       232 G~P~eV~~  239 (250)
T COG0411         232 GTPEEVRN  239 (250)
T ss_pred             CCHHHHhc
Confidence            99999864

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=1.8e-42  Score=325.93  Aligned_cols=192  Identities=32%  Similarity=0.541  Sum_probs=169.4

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-----
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-----  102 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~-----  102 (606)
                      .|+|+||++.|+.       .+++|+||||+|++||++-|+||||||||||||+|.+...| .+|+|.+||++..     
T Consensus         1 mI~f~~V~k~Y~~-------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p-t~G~i~~~~~dl~~l~~~   72 (223)
T COG2884           1 MIRFENVSKAYPG-------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP-TRGKILVNGHDLSRLKGR   72 (223)
T ss_pred             CeeehhhhhhcCC-------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcC-CCceEEECCeeccccccc
Confidence            3789999999852       37799999999999999999999999999999999999877 5999999998653     


Q ss_pred             -hhhhcccEEEEccCCCCCCCCcH----------------------HHHHHHcCCccccCCccccCChHHHHHHHHHHHH
Q psy13765        103 -INAFRRVSCYIQQDDRLQPLLTI----------------------ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALEL  159 (606)
Q Consensus       103 -~~~~~~~~~yv~Q~~~l~~~ltv----------------------~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L  159 (606)
                       ..-+|++||.|+||..+.+..||                      .++|+..||.+..+..+.+|||||+|||+||||+
T Consensus        73 ~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAi  152 (223)
T COG2884          73 EIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAI  152 (223)
T ss_pred             ccchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHH
Confidence             23568999999999999999986                      4567778888888888888888888888877777


Q ss_pred             hcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH
Q psy13765        160 INNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLF  239 (606)
Q Consensus       160 ~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~  239 (606)
                      +++                              |++|+.||||.+|||..+.++++++.++.+.|.||++.|||.. .+-
T Consensus       153 V~~------------------------------P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~-lv~  201 (223)
T COG2884         153 VNQ------------------------------PAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE-LVN  201 (223)
T ss_pred             ccC------------------------------CCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH-HHH
Confidence            777                              9999999999999999999999999999999999999999954 566


Q ss_pred             hhcceeeeecCCcEEEEcC
Q psy13765        240 QMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       240 ~~~D~v~~L~~G~~~~~G~  258 (606)
                      .+-.|++.|++|+++....
T Consensus       202 ~~~~rvl~l~~Grl~~d~~  220 (223)
T COG2884         202 RMRHRVLALEDGRLVRDES  220 (223)
T ss_pred             hccCcEEEEeCCEEEeccc
Confidence            7788999999999987654

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=7.3e-42  Score=341.04  Aligned_cols=215  Identities=24%  Similarity=0.396  Sum_probs=173.9

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--hhhh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--INAF  106 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--~~~~  106 (606)
                      |+++|++++|        +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..  ....
T Consensus         1 i~~~~~~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~   71 (220)
T cd03265           1 IEVENLVKKY--------GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP-TSGRATVAGHDVVREPREV   71 (220)
T ss_pred             CEEEEEEEEE--------CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEecCcChHHH
Confidence            4789999987        235799999999999999999999999999999999999876 5999999997643  2345


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI  185 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I  185 (606)
                      ++.++|++|++.+++.+|+.+.+.... . .     .+.+.. .++++.-+.+.+.-.  -..|.+...+|+|||||+.|
T Consensus        72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~-~-~-----~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qr~~l  142 (220)
T cd03265          72 RRRIGIVFQDLSVDDELTGWENLYIHA-R-L-----YGVPGAERRERIDELLDFVGLL--EAADRLVKTYSGGMRRRLEI  142 (220)
T ss_pred             hhcEEEecCCccccccCcHHHHHHHHH-H-H-----cCCCHHHHHHHHHHHHHHcCCH--HHhhCChhhCCHHHHHHHHH
Confidence            678999999999999999876654311 0 0     011111 233333222332211  14678889999999999999


Q ss_pred             HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765        186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL  262 (606)
Q Consensus       186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~  262 (606)
                      |+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+.+.||++++|++|+++..|+++++
T Consensus       143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~  219 (220)
T cd03265         143 ARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEEL  219 (220)
T ss_pred             HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHHc
Confidence            99999999999999999999999999999999999876 899999999987 57789999999999999999987763

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=8.4e-42  Score=363.87  Aligned_cols=218  Identities=22%  Similarity=0.395  Sum_probs=179.6

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCc--cEEEECCccCCh-h
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT--GQILTNGHSRNI-N  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~--G~I~~~G~~~~~-~  104 (606)
                      .|+++||+++|.        ++.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+  |+|.++|++... .
T Consensus         5 ~l~~~~l~~~~~--------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p-~~~~G~i~~~g~~~~~~~   75 (362)
T TIGR03258         5 GIRIDHLRVAYG--------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA-AGLTGRIAIADRDLTHAP   75 (362)
T ss_pred             EEEEEEEEEEEC--------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCCEEEEECCEECCCCC
Confidence            588999999973        35699999999999999999999999999999999999876 58  999999987532 2


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL  183 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl  183 (606)
                      ..++.+|||+|+..++|.+||.+.+.. ++..      ...+..+ ++|+.-+.+++.-.+  .+|.....|||||||||
T Consensus        76 ~~~r~ig~vfQ~~~l~p~~tv~enl~~-~l~~------~~~~~~~~~~~v~~~l~~~gL~~--~~~~~~~~LSgGq~QRv  146 (362)
T TIGR03258        76 PHKRGLALLFQNYALFPHLKVEDNVAF-GLRA------QKMPKADIAERVADALKLVGLGD--AAAHLPAQLSGGMQQRI  146 (362)
T ss_pred             HHHCCEEEEECCcccCCCCcHHHHHHH-HHHH------cCCCHHHHHHHHHHHHHhcCCCc--hhhCChhhCCHHHHHHH
Confidence            345789999999999999999776643 2211      1123222 344443333332211  46888888999999999


Q ss_pred             HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765        184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ--GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ  261 (606)
Q Consensus       184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~--g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~  261 (606)
                      +|||||+.+|++|+|||||+|||+.++.++.+.|++++++  |.|+|++|||++ ++.+++|++++|++|+++..|++++
T Consensus       147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~G~i~~~g~~~~  225 (362)
T TIGR03258       147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKDGRLAAHGEPQA  225 (362)
T ss_pred             HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence            9999999999999999999999999999999999999876  899999999976 5789999999999999999999998


Q ss_pred             HHH
Q psy13765        262 LVN  264 (606)
Q Consensus       262 ~~~  264 (606)
                      +.+
T Consensus       226 ~~~  228 (362)
T TIGR03258       226 LYD  228 (362)
T ss_pred             HHh
Confidence            854

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-41  Score=362.10  Aligned_cols=218  Identities=25%  Similarity=0.433  Sum_probs=181.7

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAF  106 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~  106 (606)
                      .|+++||+++|        +++.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.+||++... ...
T Consensus         6 ~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p-~~G~I~~~g~~i~~~~~~   76 (351)
T PRK11432          6 FVVLKNITKRF--------GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP-TEGQIFIDGEDVTHRSIQ   76 (351)
T ss_pred             EEEEEeEEEEE--------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC-CceEEEECCEECCCCCHH
Confidence            68999999987        335699999999999999999999999999999999999877 59999999987532 233


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI  185 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I  185 (606)
                      ++.+|||+|+..++|.+||.+.+.. ++..      ...+.-+ ++|+.-+.+++.-.+  ++|.++..|||||||||+|
T Consensus        77 ~r~ig~vfQ~~~lfp~~tv~eNi~~-~l~~------~~~~~~~~~~~v~~~l~~~gl~~--~~~r~~~~LSgGq~QRVaL  147 (351)
T PRK11432         77 QRDICMVFQSYALFPHMSLGENVGY-GLKM------LGVPKEERKQRVKEALELVDLAG--FEDRYVDQISGGQQQRVAL  147 (351)
T ss_pred             HCCEEEEeCCcccCCCCCHHHHHHH-HHhH------cCCCHHHHHHHHHHHHHHcCCch--hhcCChhhCCHHHHHHHHH
Confidence            5789999999999999999766543 2210      1123333 345554444443222  5688889999999999999


Q ss_pred             HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      ||||+.+|++|+|||||+|||+.++.++.+.|+++.++ |+|+|++|||++ ++.+++|++++|++|+++..|+++++..
T Consensus       148 ARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~G~i~~~g~~~~~~~  226 (351)
T PRK11432        148 ARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNKGKIMQIGSPQELYR  226 (351)
T ss_pred             HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999999999999999999999999999999875 899999999987 5779999999999999999999998753

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=8e-42  Score=338.98  Aligned_cols=209  Identities=25%  Similarity=0.407  Sum_probs=169.0

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhhc
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAFR  107 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~~  107 (606)
                      ++++|++++|+        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++... ...+
T Consensus         1 l~~~~l~~~~~--------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~~   71 (213)
T cd03259           1 LELKGLSKTYG--------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP-DSGEILIDGRDVTGVPPER   71 (213)
T ss_pred             CeeeeeEEEeC--------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEcCcCchhh
Confidence            46899999873        35799999999999999999999999999999999999876 59999999986532 2345


Q ss_pred             ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHH
Q psy13765        108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSI  185 (606)
Q Consensus       108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~I  185 (606)
                      +.++|++|++.+++.+|+.+.+... ...      .+.+.. .++++   .+++..-.+- ..|.+...+|||||||+.|
T Consensus        72 ~~i~~v~q~~~~~~~~tv~~~l~~~-~~~------~~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~LSgG~~qrl~l  141 (213)
T cd03259          72 RNIGMVFQDYALFPHLTVAENIAFG-LKL------RGVPKAEIRARV---RELLELVGLEGLLNRYPHELSGGQQQRVAL  141 (213)
T ss_pred             ccEEEEcCchhhccCCcHHHHHHhH-HHH------cCCCHHHHHHHH---HHHHHHcCChhhhhcChhhCCHHHHHHHHH
Confidence            6799999999999989987765431 100      011211 22333   2333333332 4678889999999999999


Q ss_pred             HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      |+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.++||++++|++|++++.|
T Consensus       142 a~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g  213 (213)
T cd03259         142 ARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG  213 (213)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence            99999999999999999999999999999999999874 899999999976 577899999999999998765

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=1.6e-41  Score=361.09  Aligned_cols=223  Identities=24%  Similarity=0.416  Sum_probs=181.9

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hh
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NA  105 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~  105 (606)
                      +.|+++||++.|.        ++.+|+|+|+++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++... ..
T Consensus         1 ~~L~i~~l~~~~~--------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p-~~G~I~i~g~~i~~~~~   71 (353)
T PRK10851          1 MSIEIANIKKSFG--------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ-TSGHIRFHGTDVSRLHA   71 (353)
T ss_pred             CEEEEEEEEEEeC--------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCCCCH
Confidence            3588999999872        35799999999999999999999999999999999999876 59999999987532 23


Q ss_pred             hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS  184 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~  184 (606)
                      .++.++||+|++.++|.+|+.+.+.. ++....  .....+..+ ++|+.-+.+.+.-+  -.+|.+...|||||||||+
T Consensus        72 ~~r~i~~v~Q~~~l~p~~tv~eni~~-~~~~~~--~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgGq~QRva  146 (353)
T PRK10851         72 RDRKVGFVFQHYALFRHMTVFDNIAF-GLTVLP--RRERPNAAAIKAKVTQLLEMVQLA--HLADRYPAQLSGGQKQRVA  146 (353)
T ss_pred             HHCCEEEEecCcccCCCCcHHHHHHh-hhhhcc--cccCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHH
Confidence            45789999999999999999776643 222100  001123333 33443333333222  2578899999999999999


Q ss_pred             HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765        185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                      |||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++.++||++++|++|++++.|+++++.
T Consensus       147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~G~i~~~g~~~~i~  225 (353)
T PRK10851        147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQGNIEQAGTPDQVW  225 (353)
T ss_pred             HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            999999999999999999999999999999999999876 899999999986 578999999999999999999999875


Q ss_pred             H
Q psy13765        264 N  264 (606)
Q Consensus       264 ~  264 (606)
                      +
T Consensus       226 ~  226 (353)
T PRK10851        226 R  226 (353)
T ss_pred             h
Confidence            3

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=1.2e-41  Score=341.87  Aligned_cols=215  Identities=22%  Similarity=0.445  Sum_probs=175.0

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---hh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---NA  105 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~~  105 (606)
                      ++++||+++|+        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...   ..
T Consensus         1 l~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~   71 (232)
T cd03218           1 LRAENLSKRYG--------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP-DSGKILLDGQDITKLPMHK   71 (232)
T ss_pred             CeEEEEEEEeC--------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEecccCCHhH
Confidence            46899999873        35699999999999999999999999999999999999876 59999999986432   22


Q ss_pred             -hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCcc-cccCCCCCCCCchhhhH
Q psy13765        106 -FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRV-MFLDEPTTSNPNDQKKR  182 (606)
Q Consensus       106 -~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~kr  182 (606)
                       .++.++|++|++.+++.+|+.+.+... ...      ...+.. .++++.   +++..-.+ -..|.+...+|+|||||
T Consensus        72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~-~~~------~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~G~~qr  141 (232)
T cd03218          72 RARLGIGYLPQEASIFRKLTVEENILAV-LEI------RGLSKKEREEKLE---ELLEEFHITHLRKSKASSLSGGERRR  141 (232)
T ss_pred             HHhccEEEecCCccccccCcHHHHHHHH-HHh------cCCCHHHHHHHHH---HHHHHcCChhhhhCChhhCCHHHHHH
Confidence             245699999999999999997766532 110      011111 223332   23322222 25688889999999999


Q ss_pred             HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765        183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL  262 (606)
Q Consensus       183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~  262 (606)
                      +.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+.++||++++|++|+++..|+++++
T Consensus       142 l~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~  220 (232)
T cd03218         142 VEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEI  220 (232)
T ss_pred             HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHh
Confidence            99999999999999999999999999999999999999888999999999987 57799999999999999999998775


Q ss_pred             H
Q psy13765        263 V  263 (606)
Q Consensus       263 ~  263 (606)
                      .
T Consensus       221 ~  221 (232)
T cd03218         221 A  221 (232)
T ss_pred             h
Confidence            3

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.4e-41  Score=350.99  Aligned_cols=241  Identities=25%  Similarity=0.366  Sum_probs=187.5

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC------
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN------  102 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~------  102 (606)
                      |+++|++++|+.+.   ...+.+|+|||++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..      
T Consensus         2 i~~~~v~~~y~~~~---~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~   77 (288)
T PRK13643          2 IKFEKVNYTYQPNS---PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP-TEGKVTVGDIVVSSTSKQK   77 (288)
T ss_pred             EEEEEEEEEeCCCC---cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC-CCcEEEECCEECccccccc
Confidence            78999999985210   1124699999999999999999999999999999999999876 5999999998753      


Q ss_pred             -hhhhcccEEEEccCC--CCCCCCcHHHHHHHcCCccccCCccccCChHHH-HHHHHHHHHhcCCcccccCCCCCCCCch
Q psy13765        103 -INAFRRVSCYIQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQK-KRLSIALELINNPRVMFLDEPTTSNPND  178 (606)
Q Consensus       103 -~~~~~~~~~yv~Q~~--~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqr-qRv~ia~~L~~~~~~~~~de~~~~~s~g  178 (606)
                       ...+++.+|||+|++  .+++ .|+.+.+. ++...      .+++..+. +|+.-+.+.+.-.+ -+.|.+...||||
T Consensus        78 ~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~-~~~~~------~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~~LSgG  148 (288)
T PRK13643         78 EIKPVRKKVGVVFQFPESQLFE-ETVLKDVA-FGPQN------FGIPKEKAEKIAAEKLEMVGLAD-EFWEKSPFELSGG  148 (288)
T ss_pred             cHHHHHhhEEEEecCcchhccc-chHHHHHH-hHHHH------cCCCHHHHHHHHHHHHHHcCCCh-hhccCCcccCCHH
Confidence             234677899999987  4555 58766554 22211      01333332 23332222222110 2568899999999


Q ss_pred             hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      ||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.++|||+++|++|++++.|+
T Consensus       149 qkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~G~i~~~g~  227 (288)
T PRK13643        149 QMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKGHIISCGT  227 (288)
T ss_pred             HHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECC
Confidence            999999999999999999999999999999999999999999888999999999986 5678999999999999999999


Q ss_pred             hhHHHH---HHHhCCCCCCCCCChHHHH
Q psy13765        259 TDQLVN---YLSSVNLPCPKYHNPADFV  283 (606)
Q Consensus       259 ~~~~~~---~f~~~g~~~~~~~~~ad~~  283 (606)
                      ++++..   .++..|+.+|.....++.+
T Consensus       228 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~  255 (288)
T PRK13643        228 PSDVFQEVDFLKAHELGVPKATHFADQL  255 (288)
T ss_pred             HHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence            998753   4566777776654444433

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=1.9e-41  Score=362.52  Aligned_cols=219  Identities=22%  Similarity=0.416  Sum_probs=182.2

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hh
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NA  105 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~  105 (606)
                      ..|+++|+++.|        +++.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++... ..
T Consensus        13 ~~L~l~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p-~~G~I~~~g~~i~~~~~   83 (375)
T PRK09452         13 PLVELRGISKSF--------DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP-DSGRIMLDGQDITHVPA   83 (375)
T ss_pred             ceEEEEEEEEEE--------CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEECCEECCCCCH
Confidence            358999999987        335799999999999999999999999999999999999877 59999999987532 23


Q ss_pred             hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS  184 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~  184 (606)
                      .++.+|||+|++.++|.+||.+.+.. ++..      .+.+..+ ++|+.-+.+++.-.+  ++|.....|||||||||+
T Consensus        84 ~~r~ig~vfQ~~~lfp~ltv~eNi~~-~l~~------~~~~~~~~~~~~~~~l~~~~l~~--~~~~~p~~LSgGq~QRVa  154 (375)
T PRK09452         84 ENRHVNTVFQSYALFPHMTVFENVAF-GLRM------QKTPAAEITPRVMEALRMVQLEE--FAQRKPHQLSGGQQQRVA  154 (375)
T ss_pred             HHCCEEEEecCcccCCCCCHHHHHHH-HHhh------cCCCHHHHHHHHHHHHHHcCCch--hhhCChhhCCHHHHHHHH
Confidence            45789999999999999999776643 2211      1233333 345544444443221  568888899999999999


Q ss_pred             HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765        185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                      |||||+.+|++|+|||||+|||..++..+.+.|++++++ |.|+|++|||+. ++..++|++++|++|+++..|+++++.
T Consensus       155 LARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~i~  233 (375)
T PRK09452        155 IARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRDGRIEQDGTPREIY  233 (375)
T ss_pred             HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            999999999999999999999999999999999999875 999999999976 578999999999999999999999875


Q ss_pred             H
Q psy13765        264 N  264 (606)
Q Consensus       264 ~  264 (606)
                      .
T Consensus       234 ~  234 (375)
T PRK09452        234 E  234 (375)
T ss_pred             h
Confidence            3

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=5.5e-42  Score=320.34  Aligned_cols=216  Identities=25%  Similarity=0.479  Sum_probs=177.2

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhhc
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAFR  107 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~~  107 (606)
                      +.+++|.+.|..          .==..++.|+.||++||+||||||||||||+|+|+..| .+|+|.+||++... .-.+
T Consensus         2 l~L~~V~~~y~~----------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P-~~G~i~i~g~d~t~~~P~~   70 (231)
T COG3840           2 LALDDVRFSYGH----------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP-ASGEILINGVDHTASPPAE   70 (231)
T ss_pred             ccccceEEeeCc----------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC-CCceEEEcCeecCcCCccc
Confidence            456788887632          23456889999999999999999999999999999887 59999999987542 3346


Q ss_pred             ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHH
Q psy13765        108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL  187 (606)
Q Consensus       108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~  187 (606)
                      |-++.+||+.++|..+||++.+. +|+...     -.|..-||+|+.-|.+=+.-.+  +++..+..|||||||||++||
T Consensus        71 RPVSmlFQEnNLFaHLtV~qNig-LGl~P~-----LkL~a~~r~~v~~aa~~vGl~~--~~~RLP~~LSGGqRQRvALAR  142 (231)
T COG3840          71 RPVSMLFQENNLFAHLTVAQNIG-LGLSPG-----LKLNAEQREKVEAAAAQVGLAG--FLKRLPGELSGGQRQRVALAR  142 (231)
T ss_pred             CChhhhhhccccchhhhhhhhhc-ccCCcc-----cccCHHHHHHHHHHHHHhChhh--HhhhCccccCchHHHHHHHHH
Confidence            77999999999999999976542 344332     2377778888765443332211  567777888888888888889


Q ss_pred             hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        188 ELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       188 aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      +|+++-+||+||||+|.|||.-+.++..++.+++++ +.|++++||+|+ ++.+++|+++++++||+.+.|+.++...
T Consensus       143 clvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~~  219 (231)
T COG3840         143 CLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELLS  219 (231)
T ss_pred             HHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence            999999999999999999999999999999999875 899999999998 4779999999999999999999987653

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=2.1e-41  Score=342.01  Aligned_cols=219  Identities=21%  Similarity=0.365  Sum_probs=175.5

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAF  106 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~  106 (606)
                      .++++||++.|+        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+... ...
T Consensus         2 ~l~~~~l~~~~~--------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~   72 (239)
T cd03296           2 SIEVRNVSKRFG--------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP-DSGTILFGGEDATDVPVQ   72 (239)
T ss_pred             EEEEEeEEEEEC--------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCcCCcc
Confidence            589999999873        35699999999999999999999999999999999999876 59999999986532 223


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHc-CCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHH
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLL-GLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRL  183 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~-gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl  183 (606)
                      ++.++|++|++.+++.+|+.+.+... ......    ......+ ++++   .+++..-.+- ..+.+...+|+|||||+
T Consensus        73 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~----~~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~LS~G~~qrl  145 (239)
T cd03296          73 ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRS----ERPPEAEIRAKV---HELLKLVQLDWLADRYPAQLSGGQRQRV  145 (239)
T ss_pred             ccceEEEecCCcccCCCCHHHHHhhhhhhcccc----ccCCHHHHHHHH---HHHHHHcCChhhhhcChhhCCHHHHHHH
Confidence            46799999999999989997766431 111000    0001111 2222   2233222221 45788899999999999


Q ss_pred             HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765        184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL  262 (606)
Q Consensus       184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~  262 (606)
                      .||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+.+.||++++|++|++++.|+++++
T Consensus       146 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~  224 (239)
T cd03296         146 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEV  224 (239)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHH
Confidence            9999999999999999999999999999999999999875 899999999986 46789999999999999999998876


Q ss_pred             H
Q psy13765        263 V  263 (606)
Q Consensus       263 ~  263 (606)
                      .
T Consensus       225 ~  225 (239)
T cd03296         225 Y  225 (239)
T ss_pred             h
Confidence            3

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=1.3e-41  Score=338.12  Aligned_cols=207  Identities=22%  Similarity=0.345  Sum_probs=166.5

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-----
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-----  103 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-----  103 (606)
                      |+++|++++|+.      +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++...     
T Consensus         2 l~~~~l~~~~~~------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~   74 (216)
T TIGR00960         2 IRFEQVSKAYPG------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP-TRGKIRFNGQDLTRLRGRE   74 (216)
T ss_pred             eEEEEEEEEecC------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEehhhcChhH
Confidence            789999999732      124699999999999999999999999999999999999876 59999999986421     


Q ss_pred             -hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCCh-HHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhh
Q psy13765        104 -NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSG-GQKKRLSIALELINNPRVM-FLDEPTTSNPNDQK  180 (606)
Q Consensus       104 -~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSg-GqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~  180 (606)
                       ..+++.++|++|++.+++.+|+.+.+... ...      ..... ..++++.   +++..-.+- ..|.+...+|||||
T Consensus        75 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~-~~~------~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LSgG~~  144 (216)
T TIGR00960        75 IPFLRRHIGMVFQDHRLLSDRTVYDNVAFP-LRI------IGVPPRDANERVS---AALEKVGLEGKAHALPMQLSGGEQ  144 (216)
T ss_pred             HHHHHHhceEEecCccccccccHHHHHHHH-HHh------cCCCHHHHHHHHH---HHHHHcCChhhhhCChhhCCHHHH
Confidence             13567899999999999999987765431 100      01111 1233433   222222221 45788889999999


Q ss_pred             hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765        181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC  253 (606)
Q Consensus       181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~  253 (606)
                      ||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++ .+.++||++++|++|++
T Consensus       145 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       145 QRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRGRL  216 (216)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence            9999999999999999999999999999999999999999877999999999986 56789999999999974

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.1e-41  Score=359.42  Aligned_cols=219  Identities=26%  Similarity=0.414  Sum_probs=177.1

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-----
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-----  103 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-----  103 (606)
                      |+++||+++|+.+    .+.+++|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|.+...     
T Consensus         2 i~i~~l~~~y~~~----~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p-~~G~I~~~g~~i~~~~~~~   76 (343)
T PRK11153          2 IELKNISKVFPQG----GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP-TSGRVLVDGQDLTALSEKE   76 (343)
T ss_pred             EEEEeEEEEeCCC----CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEECCEECCcCCHHH
Confidence            7899999998421    1235799999999999999999999999999999999999876 59999999986532     


Q ss_pred             -hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhh
Q psy13765        104 -NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQK  180 (606)
Q Consensus       104 -~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~  180 (606)
                       ..+++.+|||+|++.+++.+|+.+.+... +..      .+.+.-+ ++++.   +++..-.+- ..|.++..||||||
T Consensus        77 ~~~~~~~ig~v~q~~~l~~~~tv~eni~~~-~~~------~~~~~~~~~~~~~---~~l~~~gL~~~~~~~~~~LSgGq~  146 (343)
T PRK11153         77 LRKARRQIGMIFQHFNLLSSRTVFDNVALP-LEL------AGTPKAEIKARVT---ELLELVGLSDKADRYPAQLSGGQK  146 (343)
T ss_pred             HHHHhcCEEEEeCCCccCCCCcHHHHHHHH-HHH------cCCCHHHHHHHHH---HHHHHcCCchhhhCChhhCCHHHH
Confidence             13467899999999999999997665432 100      0122222 23333   223222221 46788889999999


Q ss_pred             hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765        181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT  259 (606)
Q Consensus       181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~  259 (606)
                      ||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.++||++++|++|++++.|++
T Consensus       147 qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~  225 (343)
T PRK11153        147 QRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTV  225 (343)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCH
Confidence            9999999999999999999999999999999999999999875 899999999986 57789999999999999999999


Q ss_pred             hHHH
Q psy13765        260 DQLV  263 (606)
Q Consensus       260 ~~~~  263 (606)
                      +++.
T Consensus       226 ~~~~  229 (343)
T PRK11153        226 SEVF  229 (343)
T ss_pred             HHHH
Confidence            8874

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=2.4e-41  Score=364.04  Aligned_cols=222  Identities=24%  Similarity=0.407  Sum_probs=185.3

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~  104 (606)
                      .|+++||++.|        +++.+|+|+||++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++..   ..
T Consensus         3 ~L~~~nls~~y--------~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p-~sG~I~l~G~~i~~~~~~   73 (402)
T PRK09536          3 MIDVSDLSVEF--------GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP-TAGTVLVAGDDVEALSAR   73 (402)
T ss_pred             eEEEeeEEEEE--------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC-CCcEEEECCEEcCcCCHH
Confidence            58999999987        346799999999999999999999999999999999999877 5999999998653   35


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS  184 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~  184 (606)
                      ++++.+|||+|++.+++.+|+.+.+.. +...... ....++.-.++++.-+.+.+.-.  -+.|.+...||+|||||+.
T Consensus        74 ~~~~~ig~v~q~~~l~~~~tv~e~v~~-~~~~~~~-~~~~~~~~~~~~v~~~le~vgl~--~~~~~~~~~LSgGerQRv~  149 (402)
T PRK09536         74 AASRRVASVPQDTSLSFEFDVRQVVEM-GRTPHRS-RFDTWTETDRAAVERAMERTGVA--QFADRPVTSLSGGERQRVL  149 (402)
T ss_pred             HHhcceEEEccCCCCCCCCCHHHHHHh-ccchhcc-cccCCCHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHH
Confidence            667889999999999999999887654 2221111 11223333455555455544322  2568899999999999999


Q ss_pred             HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765        185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                      |||||+++|++|+|||||+|||+.++.+++++|++++++|+|||+++|+++ .+.++|||+++|++|++++.|+++++.
T Consensus       150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~G~iv~~G~~~ev~  227 (402)
T PRK09536        150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLADGRVRAAGPPADVL  227 (402)
T ss_pred             HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence            999999999999999999999999999999999999878999999999987 577999999999999999999998753

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=2.3e-41  Score=341.72  Aligned_cols=222  Identities=27%  Similarity=0.431  Sum_probs=176.8

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC------
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN------  102 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~------  102 (606)
                      ++++||+++|+       +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++..      
T Consensus         1 l~~~~l~~~~~-------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~   72 (241)
T cd03256           1 IEVENLSKTYP-------NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP-TSGSVLIDGTDINKLKGKA   72 (241)
T ss_pred             CEEeeEEEecC-------CccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-CCceEEECCEeccccCHhH
Confidence            46899999863       115699999999999999999999999999999999999876 5999999998653      


Q ss_pred             hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCC--cccc-CChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCch
Q psy13765        103 INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNT--RSSQ-LSGGQKKRLSIALELINNPRVM-FLDEPTTSNPND  178 (606)
Q Consensus       103 ~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~--~~~~-lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g  178 (606)
                      ....++.++|++|++.+++.+|+.+.+.. +.......  ...+ .+.-.++++   .+++..-++- ..|.+...||+|
T Consensus        73 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~LS~G  148 (241)
T cd03256          73 LRQLRRQIGMIFQQFNLIERLSVLENVLS-GRLGRRSTWRSLFGLFPKEEKQRA---LAALERVGLLDKAYQRADQLSGG  148 (241)
T ss_pred             HHHHHhccEEEcccCcccccCcHHHHHHh-hhcccchhhhhhcccCcHHHHHHH---HHHHHHcCChhhhCCCcccCCHH
Confidence            22456789999999999999999776643 21110000  0001 111223333   2333333332 568889999999


Q ss_pred             hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      ||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+.++||++++|++|++++.|
T Consensus       149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~i~~~~  227 (241)
T cd03256         149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGRIVFDG  227 (241)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeec
Confidence            999999999999999999999999999999999999999999864 899999999987 477899999999999999999


Q ss_pred             ChhHHH
Q psy13765        258 ATDQLV  263 (606)
Q Consensus       258 ~~~~~~  263 (606)
                      +++++.
T Consensus       228 ~~~~~~  233 (241)
T cd03256         228 PPAELT  233 (241)
T ss_pred             CHHHhh
Confidence            988753

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=1.8e-41  Score=335.30  Aligned_cols=206  Identities=27%  Similarity=0.414  Sum_probs=167.5

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhhc
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAFR  107 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~~  107 (606)
                      |+++|++++|+        ++++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++... ...+
T Consensus         1 l~~~~l~~~~~--------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~   71 (208)
T cd03268           1 LKTNDLTKTYG--------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP-DSGEITFDGKSYQKNIEAL   71 (208)
T ss_pred             CEEEEEEEEEC--------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEECCCcccchHHHH
Confidence            46899999872        35799999999999999999999999999999999999876 59999999986532 3456


Q ss_pred             ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHHH
Q psy13765        108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSIA  186 (606)
Q Consensus       108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~IA  186 (606)
                      +.++|++|++.+++..|+.+.+.......  +     .   .++++.-+.+.+   ++- ..+.+...+|+|||||++||
T Consensus        72 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~-----~---~~~~~~~~l~~~---~l~~~~~~~~~~LS~G~~qrv~la  138 (208)
T cd03268          72 RRIGALIEAPGFYPNLTARENLRLLARLL--G-----I---RKKRIDEVLDVV---GLKDSAKKKVKGFSLGMKQRLGIA  138 (208)
T ss_pred             hhEEEecCCCccCccCcHHHHHHHHHHhc--C-----C---cHHHHHHHHHHc---CCHHHHhhhHhhCCHHHHHHHHHH
Confidence            77999999999999999977654321100  0     0   123332222222   221 45777888999999999999


Q ss_pred             HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      +||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++. .+.+++|++++|++|++++.|
T Consensus       139 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g  208 (208)
T cd03268         139 LALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG  208 (208)
T ss_pred             HHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence            9999999999999999999999999999999999888999999999987 466899999999999998765

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=2.5e-41  Score=340.04  Aligned_cols=220  Identities=25%  Similarity=0.394  Sum_probs=175.2

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-----
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-----  103 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-----  103 (606)
                      |+++|++++++..    .+.+++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...     
T Consensus         2 i~~~~l~~~~~~~----~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~   76 (233)
T cd03258           2 IELKNVSKVFGDT----GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP-TSGSVLVDGTDLTLLSGKE   76 (233)
T ss_pred             eEEecceEEccCC----CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEcccCCHHH
Confidence            7899999987321    0113799999999999999999999999999999999999876 59999999986532     


Q ss_pred             -hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhh
Q psy13765        104 -NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKK  181 (606)
Q Consensus       104 -~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~k  181 (606)
                       ...++.++|++|++.+++.+|+.+.+... ...      ...+..+  ....+.+++..-++- ..|.+...+|+||||
T Consensus        77 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~-~~~------~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q  147 (233)
T cd03258          77 LRKARRRIGMIFQHFNLLSSRTVFENVALP-LEI------AGVPKAE--IEERVLELLELVGLEDKADAYPAQLSGGQKQ  147 (233)
T ss_pred             HHHHHhheEEEccCcccCCCCcHHHHHHHH-HHH------cCCCHHH--HHHHHHHHHHHCCChhhhhcChhhCCHHHHH
Confidence             12467899999999999999987665431 100      0112111  111223333333332 467888899999999


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD  260 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~  260 (606)
                      |+.||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+.++||++++|++|++++.|+++
T Consensus       148 rv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~  226 (233)
T cd03258         148 RVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEKGEVVEEGTVE  226 (233)
T ss_pred             HHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHH
Confidence            999999999999999999999999999999999999999875 899999999976 577899999999999999999987


Q ss_pred             HHH
Q psy13765        261 QLV  263 (606)
Q Consensus       261 ~~~  263 (606)
                      ++.
T Consensus       227 ~~~  229 (233)
T cd03258         227 EVF  229 (233)
T ss_pred             HHh
Confidence            763

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=3.6e-41  Score=351.82  Aligned_cols=216  Identities=23%  Similarity=0.396  Sum_probs=179.2

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--hhh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--INA  105 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--~~~  105 (606)
                      .++++|++++|        +++.+|+|+||++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..  ...
T Consensus         2 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~-~~G~i~i~g~~~~~~~~~   72 (301)
T TIGR03522         2 SIRVSSLTKLY--------GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP-DSGSVQVCGEDVLQNPKE   72 (301)
T ss_pred             EEEEEEEEEEE--------CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEcccChHH
Confidence            58899999997        346799999999999999999999999999999999999876 5999999998653  234


Q ss_pred             hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHH
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRL  183 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl  183 (606)
                      .++.+||++|++.+++.+|+.+.+.....       ..+++..+ ++++.-+.+.+   ++- ..|.+...+|+|||||+
T Consensus        73 ~~~~ig~~~q~~~l~~~~tv~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~---gl~~~~~~~~~~LS~G~~qrv  142 (301)
T TIGR03522        73 VQRNIGYLPEHNPLYLDMYVREYLQFIAG-------IYGMKGQLLKQRVEEMIELV---GLRPEQHKKIGQLSKGYRQRV  142 (301)
T ss_pred             HHhceEEecCCCCCCCCCcHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHC---CCchHhcCchhhCCHHHHHHH
Confidence            56789999999999999999887764320       11123332 23333222222   221 35788889999999999


Q ss_pred             HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765        184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                      .||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++|||+++|++|++++.|+++++.
T Consensus       143 ~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~~~  220 (301)
T TIGR03522       143 GLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDELS  220 (301)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999999999965 799999999987 578999999999999999999999876


Q ss_pred             H
Q psy13765        264 N  264 (606)
Q Consensus       264 ~  264 (606)
                      .
T Consensus       221 ~  221 (301)
T TIGR03522       221 A  221 (301)
T ss_pred             H
Confidence            5

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.4e-41  Score=360.86  Aligned_cols=218  Identities=23%  Similarity=0.384  Sum_probs=179.2

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAF  106 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~  106 (606)
                      .|+++||+++|        +++.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++... ...
T Consensus         3 ~l~i~~l~~~~--------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p-~~G~I~~~g~~i~~~~~~   73 (369)
T PRK11000          3 SVTLRNVTKAY--------GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI-TSGDLFIGEKRMNDVPPA   73 (369)
T ss_pred             EEEEEEEEEEe--------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEECCEECCCCCHh
Confidence            48999999987        235699999999999999999999999999999999999876 59999999987532 223


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI  185 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I  185 (606)
                      ++.++||+|++.+++.+|+.+.+.. ++..      .+.+..+ ++|+.-+.+.+.-.  -.+|.+...|||||||||+|
T Consensus        74 ~~~i~~v~Q~~~l~~~~tv~eni~~-~~~~------~~~~~~~~~~~~~~~l~~lgL~--~~~~~~~~~LSgGq~QRvaL  144 (369)
T PRK11000         74 ERGVGMVFQSYALYPHLSVAENMSF-GLKL------AGAKKEEINQRVNQVAEVLQLA--HLLDRKPKALSGGQRQRVAI  144 (369)
T ss_pred             HCCEEEEeCCcccCCCCCHHHHHHh-HHhh------cCCCHHHHHHHHHHHHHHcCCh--hhhcCChhhCCHHHHHHHHH
Confidence            5679999999999999999776643 2210      1122222 34444333333221  14678888999999999999


Q ss_pred             HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      ||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|+|++|||++ ++.++||++++|++|+++..|+++++..
T Consensus       145 AraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~i~~  223 (369)
T PRK11000        145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELYH  223 (369)
T ss_pred             HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999999999999999999999999999999875 899999999976 5778999999999999999999988753

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=4.2e-41  Score=339.99  Aligned_cols=217  Identities=24%  Similarity=0.373  Sum_probs=176.9

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-----
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-----  103 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-----  103 (606)
                      ++++|++++++        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...     
T Consensus         2 l~~~~l~~~~~--------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~   72 (240)
T PRK09493          2 IEFKNVSKHFG--------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI-TSGDLIVDGLKVNDPKVDE   72 (240)
T ss_pred             EEEEeEEEEEC--------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCcCChhH
Confidence            68999999873        35699999999999999999999999999999999999876 59999999986532     


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhH
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKR  182 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~kr  182 (606)
                      ...++.++|++|++.+++.+|+.+.+.. +....     .+.+.-+  ....+.+++..-.+- .+|.+...+|+|||||
T Consensus        73 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~-~~~~~-----~~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr  144 (240)
T PRK09493         73 RLIRQEAGMVFQQFYLFPHLTALENVMF-GPLRV-----RGASKEE--AEKQARELLAKVGLAERAHHYPSELSGGQQQR  144 (240)
T ss_pred             HHHhhceEEEecccccCCCCcHHHHHHh-HHHHh-----cCCCHHH--HHHHHHHHHHHcCChHHHhcChhhcCHHHHHH
Confidence            2446789999999999999999776643 21110     0111111  112223444433332 4588889999999999


Q ss_pred             HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765        183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL  262 (606)
Q Consensus       183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~  262 (606)
                      +.||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++++.|+++++
T Consensus       145 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~  223 (240)
T PRK09493        145 VAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQVL  223 (240)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHHH
Confidence            99999999999999999999999999999999999999877999999999987 46788999999999999999998876


Q ss_pred             H
Q psy13765        263 V  263 (606)
Q Consensus       263 ~  263 (606)
                      .
T Consensus       224 ~  224 (240)
T PRK09493        224 I  224 (240)
T ss_pred             h
Confidence            4

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=2.1e-41  Score=353.79  Aligned_cols=207  Identities=23%  Similarity=0.375  Sum_probs=171.3

Q ss_pred             cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--hhhhcccEEEEccCCCCCCCCc
Q psy13765         47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--INAFRRVSCYIQQDDRLQPLLT  124 (606)
Q Consensus        47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--~~~~~~~~~yv~Q~~~l~~~lt  124 (606)
                      +++.+|+|+|++|++||+++|+||||||||||+|+|+|+.++ .+|+|.++|.+..  ....++.+||++|++.+++.+|
T Consensus         4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t   82 (302)
T TIGR01188         4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP-TSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT   82 (302)
T ss_pred             CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence            346799999999999999999999999999999999999876 5999999998653  2345678999999999999999


Q ss_pred             HHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCC
Q psy13765        125 IENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPT  202 (606)
Q Consensus       125 v~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPT  202 (606)
                      +.+.+.....       ..+.+..+ ++|+.   +++..-++- ..|.+...+||||||||.||+||+.+|++|+|||||
T Consensus        83 v~e~l~~~~~-------~~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt  152 (302)
T TIGR01188        83 GRENLEMMGR-------LYGLPKDEAEERAE---ELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPT  152 (302)
T ss_pred             HHHHHHHHHH-------HcCCCHHHHHHHHH---HHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            9877654311       01122222 33333   333332332 468888899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHHH
Q psy13765        203 TGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNY  265 (606)
Q Consensus       203 sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~~  265 (606)
                      +|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.+-
T Consensus       153 ~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~  214 (302)
T TIGR01188       153 TGLDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRR  214 (302)
T ss_pred             cCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence            999999999999999999888999999999986 57789999999999999999999987653

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=2.9e-41  Score=336.69  Aligned_cols=213  Identities=25%  Similarity=0.404  Sum_probs=170.7

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcc
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR  108 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~  108 (606)
                      |+++|++++|+.+    .+.+.+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|++..  ..++
T Consensus         1 l~~~~l~~~~~~~----~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~--~~~~   73 (220)
T cd03293           1 LEVRNVSKTYGGG----GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP-TSGEVLVDGEPVT--GPGP   73 (220)
T ss_pred             CeEEEEEEEcCCC----CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECc--cccC
Confidence            4689999987421    1125799999999999999999999999999999999999876 5999999998764  3467


Q ss_pred             cEEEEccCCCCCCCCcHHHHHHHc-CCccccCCccccCChH-HHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHH
Q psy13765        109 VSCYIQQDDRLQPLLTIENVMSLL-GLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSI  185 (606)
Q Consensus       109 ~~~yv~Q~~~l~~~ltv~~~l~~~-gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~I  185 (606)
                      .++||+|++.+++.+|+.+.+... ...        +++.. .++++   .+++..-++- .+|.+...+|+|||||+.|
T Consensus        74 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~--------~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~LSgG~~qrl~l  142 (220)
T cd03293          74 DRGYVFQQDALLPWLTVLDNVALGLELQ--------GVPKAEARERA---EELLELVGLSGFENAYPHQLSGGMRQRVAL  142 (220)
T ss_pred             cEEEEecccccccCCCHHHHHHHHHHHc--------CCCHHHHHHHH---HHHHHHcCChhhhhCCcccCCHHHHHHHHH
Confidence            799999999999989987765431 110        11111 12333   2333332332 4577888999999999999


Q ss_pred             HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeec--CCcEEEEcChh
Q psy13765        186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLS--GGQCLYQGATD  260 (606)
Q Consensus       186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~--~G~~~~~G~~~  260 (606)
                      |+||+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||+++|+++ .+.+.||++++|+  +|+++..++++
T Consensus       143 a~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~  219 (220)
T cd03293         143 ARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD  219 (220)
T ss_pred             HHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence            9999999999999999999999999999999999965 4899999999986 4678999999999  79999888753

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=2.7e-41  Score=334.46  Aligned_cols=208  Identities=20%  Similarity=0.431  Sum_probs=169.2

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcc
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR  108 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~  108 (606)
                      ++++|+++.++        ++.+++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++... ..++
T Consensus         1 l~~~~l~~~~~--------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~-~~~~   70 (210)
T cd03269           1 LEVENVTKRFG--------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP-DSGEVLFDGKPLDI-AARN   70 (210)
T ss_pred             CEEEEEEEEEC--------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCCchhH-HHHc
Confidence            46899999872        35699999999999999999999999999999999999876 59999999987643 4567


Q ss_pred             cEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc-cccCCCCCCCCchhhhHHHHH
Q psy13765        109 VSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV-MFLDEPTTSNPNDQKKRLSIA  186 (606)
Q Consensus       109 ~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~krl~IA  186 (606)
                      .++|++|++.+++.+|+.+.+.....  ..     +....+ ++++   .+++..-++ -..+.+...+|+|||||+.||
T Consensus        71 ~i~~~~q~~~~~~~~tv~e~l~~~~~--~~-----~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la  140 (210)
T cd03269          71 RIGYLPEERGLYPKMKVIDQLVYLAQ--LK-----GLKKEEARRRI---DEWLERLELSEYANKRVEELSKGNQQKVQFI  140 (210)
T ss_pred             cEEEeccCCcCCcCCcHHHHHHHHHH--Hc-----CCChHHHHHHH---HHHHHHcCChHHHhCcHhhCCHHHHHHHHHH
Confidence            89999999999999999776654210  00     111111 2222   233332222 145778889999999999999


Q ss_pred             HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      +||+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|++|++++.|
T Consensus       141 ~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~  210 (210)
T cd03269         141 AAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG  210 (210)
T ss_pred             HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence            9999999999999999999999999999999999878999999999976 467889999999999998754

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=3.4e-41  Score=339.58  Aligned_cols=221  Identities=23%  Similarity=0.397  Sum_probs=175.8

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---hh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---NA  105 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~~  105 (606)
                      ++++||++.|+        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...   ..
T Consensus         1 l~~~~l~~~~~--------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~   71 (236)
T cd03219           1 LEVRGLTKRFG--------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP-TSGSVLFDGEDITGLPPHE   71 (236)
T ss_pred             CeeeeeEEEEC--------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC-CCceEEECCEECCCCCHHH
Confidence            46899999873        35699999999999999999999999999999999999876 59999999986532   22


Q ss_pred             -hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccc----cCC-hHHHHHHHHHHHHhcCCcc-cccCCCCCCCCch
Q psy13765        106 -FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSS----QLS-GGQKKRLSIALELINNPRV-MFLDEPTTSNPND  178 (606)
Q Consensus       106 -~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~----~lS-gGqrqRv~ia~~L~~~~~~-~~~de~~~~~s~g  178 (606)
                       .++.++|++|++.+++.+|+.+.+....... ......    ... ...++++.   +++..-.+ -..|.+...+|||
T Consensus        72 ~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LSgG  147 (236)
T cd03219          72 IARLGIGRTFQIPRLFPELTVLENVMVAAQAR-TGSGLLLARARREEREARERAE---ELLERVGLADLADRPAGELSYG  147 (236)
T ss_pred             HHhcCEEEEecccccccCCCHHHHHHHHHhhc-cccccccccccccHHHHHHHHH---HHHHHcCccchhhCChhhCCHH
Confidence             2456999999999999999977765421110 000000    001 11223332   33333233 2568889999999


Q ss_pred             hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      ||||+.||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+.++||++++|++|+++..|+
T Consensus       148 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~  226 (236)
T cd03219         148 QQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQGRVIAEGT  226 (236)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEeecC
Confidence            999999999999999999999999999999999999999999878999999999987 5778999999999999999999


Q ss_pred             hhHHH
Q psy13765        259 TDQLV  263 (606)
Q Consensus       259 ~~~~~  263 (606)
                      ++++.
T Consensus       227 ~~~~~  231 (236)
T cd03219         227 PDEVR  231 (236)
T ss_pred             HHHhc
Confidence            88763

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=4.4e-41  Score=341.76  Aligned_cols=217  Identities=22%  Similarity=0.314  Sum_probs=176.3

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----  103 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----  103 (606)
                      .++++||+++|+        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...    
T Consensus         3 ~l~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~   73 (250)
T PRK11264          3 AIEVKNLVKKFH--------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP-EAGTIRVGDITIDTARSL   73 (250)
T ss_pred             cEEEeceEEEEC--------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEccccccc
Confidence            488999999873        35699999999999999999999999999999999999876 59999999976431    


Q ss_pred             -------hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCC
Q psy13765        104 -------NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTS  174 (606)
Q Consensus       104 -------~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~  174 (606)
                             ...++.++|++|++.+++..|+.+.+.... ...     ...+..+ ++++   .+++..-.+- ..|.+...
T Consensus        74 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~-~~~-----~~~~~~~~~~~~---~~~l~~~gl~~~~~~~~~~  144 (250)
T PRK11264         74 SQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGP-VIV-----KGEPKEEATARA---RELLAKVGLAGKETSYPRR  144 (250)
T ss_pred             cchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHH-HHh-----cCCCHHHHHHHH---HHHHHHcCCcchhhCChhh
Confidence                   234678999999999999889876654311 000     0112212 2233   2333322222 35788999


Q ss_pred             CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765        175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL  254 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~  254 (606)
                      +|+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++. .+.++||++++|++|+++
T Consensus       145 LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~  223 (250)
T PRK11264        145 LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQGRIV  223 (250)
T ss_pred             CChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEE
Confidence            9999999999999999999999999999999999999999999999878999999999976 577899999999999999


Q ss_pred             EEcChhHHH
Q psy13765        255 YQGATDQLV  263 (606)
Q Consensus       255 ~~G~~~~~~  263 (606)
                      +.|+++++.
T Consensus       224 ~~~~~~~~~  232 (250)
T PRK11264        224 EQGPAKALF  232 (250)
T ss_pred             EeCCHHHHh
Confidence            999988764

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.1e-42  Score=329.58  Aligned_cols=220  Identities=23%  Similarity=0.426  Sum_probs=185.9

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---  103 (606)
                      ..+..+||.++|        +++++++|||+++++||+++++|||||||||.+.++.|+.++ .+|+|.+||.+++.   
T Consensus         3 ~~L~a~~l~K~y--------~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~-d~G~i~ld~~diT~lPm   73 (243)
T COG1137           3 STLVAENLAKSY--------KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP-DSGKILLDDEDITKLPM   73 (243)
T ss_pred             cEEEehhhhHhh--------CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEec-CCceEEECCcccccCCh
Confidence            468889999886        567899999999999999999999999999999999999887 49999999987643   


Q ss_pred             -hhhcccEEEEccCCCCCCCCcHHHHHHH-cCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhh
Q psy13765        104 -NAFRRVSCYIQQDDRLQPLLTIENVMSL-LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQK  180 (606)
Q Consensus       104 -~~~~~~~~yv~Q~~~l~~~ltv~~~l~~-~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~  180 (606)
                       ...|..+||+||++..|..+||++.+.. +.+... +     ..--|+|  .-+.+|+.+-.+. +.|.+..+||||||
T Consensus        74 ~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d-----~~~~~~~--~~l~~LL~ef~i~hlr~~~a~sLSGGER  145 (243)
T COG1137          74 HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-D-----LKKAERK--EELDALLEEFHITHLRDSKAYSLSGGER  145 (243)
T ss_pred             HHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-c-----hhHHHHH--HHHHHHHHHhchHHHhcCcccccccchH
Confidence             3345679999999999999999665543 333221 1     1112222  2234666666664 88999999999999


Q ss_pred             hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765        181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD  260 (606)
Q Consensus       181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~  260 (606)
                      ||++|||||+.+|+.++||||++|.||.+..+|.++++.|+++|..|++|-|+..+ ...+|||.+++.+|++..+|+++
T Consensus       146 RR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVRE-tL~i~dRaYIi~~G~vla~G~p~  224 (243)
T COG1137         146 RRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRE-TLDICDRAYIISDGKVLAEGSPE  224 (243)
T ss_pred             HHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHH-HHhhhheEEEEecCeEEecCCHH
Confidence            99999999999999999999999999999999999999999999999999999885 66999999999999999999999


Q ss_pred             HHHH
Q psy13765        261 QLVN  264 (606)
Q Consensus       261 ~~~~  264 (606)
                      ++.+
T Consensus       225 ei~~  228 (243)
T COG1137         225 EIVN  228 (243)
T ss_pred             HHhc
Confidence            9864

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=3.3e-41  Score=336.07  Aligned_cols=215  Identities=27%  Similarity=0.390  Sum_probs=173.5

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh--hhh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--NAF  106 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--~~~  106 (606)
                      |+++||++.++.      +++++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...  ..+
T Consensus         1 l~~~~l~~~~~~------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~   73 (220)
T cd03263           1 LQIRNLTKTYKK------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP-TSGTAYINGYSIRTDRKAA   73 (220)
T ss_pred             CEEEeeEEEeCC------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEecccchHHH
Confidence            478999998731      125799999999999999999999999999999999999876 59999999986532  345


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc-cccCCCCCCCCchhhhHHH
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV-MFLDEPTTSNPNDQKKRLS  184 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~krl~  184 (606)
                      ++.++|++|++.+++.+|+.+.+.....       ..+.+..+ ++++   .+++..-++ -..|.+...+|+|||||++
T Consensus        74 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~-------~~~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~LS~G~~qrv~  143 (220)
T cd03263          74 RQSLGYCPQFDALFDELTVREHLRFYAR-------LKGLPKSEIKEEV---ELLLRVLGLTDKANKRARTLSGGMKRKLS  143 (220)
T ss_pred             hhhEEEecCcCCccccCCHHHHHHHHHH-------HcCCCHHHHHHHH---HHHHHHcCCHHHHhChhhhCCHHHHHHHH
Confidence            6779999999999999998776653210       00112111 2232   223322223 1457888899999999999


Q ss_pred             HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765        185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL  262 (606)
Q Consensus       185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~  262 (606)
                      ||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|++++.|+++++
T Consensus       144 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~  219 (220)
T cd03263         144 LAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL  219 (220)
T ss_pred             HHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence            99999999999999999999999999999999999976 599999999987 46788999999999999999988764

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=100.00  E-value=3.7e-41  Score=336.00  Aligned_cols=216  Identities=22%  Similarity=0.407  Sum_probs=173.6

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---hh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---NA  105 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~~  105 (606)
                      |+++||+++++        ++++++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...   ..
T Consensus         1 l~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~   71 (222)
T cd03224           1 LEVENLNAGYG--------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP-RSGSIRFDGRDITGLPPHE   71 (222)
T ss_pred             CEEeeEEeecC--------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEcCCCCHHH
Confidence            46899999862        35699999999999999999999999999999999999876 59999999976432   22


Q ss_pred             -hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765        106 -FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS  184 (606)
Q Consensus       106 -~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~  184 (606)
                       .++.++|++|++.+++.+|+.+.+.......  .      ..-.+.++.-+.+.+...+ -.+|.+...+|+|||||+.
T Consensus        72 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~--~------~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LS~G~~qrv~  142 (222)
T cd03224          72 RARAGIGYVPEGRRIFPELTVEENLLLGAYAR--R------RAKRKARLERVYELFPRLK-ERRKQLAGTLSGGEQQMLA  142 (222)
T ss_pred             HHhcCeEEeccccccCCCCcHHHHHHHHhhhc--C------chhHHHHHHHHHHHHHhhh-hhhhCchhhCCHHHHHHHH
Confidence             3567999999999999999976654321110  0      0112233322222221100 1357888999999999999


Q ss_pred             HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765        185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                      ||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|++|+++..|+++++.
T Consensus       143 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~  220 (222)
T cd03224         143 IARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLERGRVVLEGTAAELL  220 (222)
T ss_pred             HHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence            999999999999999999999999999999999999878899999999976 577899999999999999999987753

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.6e-41  Score=346.69  Aligned_cols=232  Identities=25%  Similarity=0.395  Sum_probs=180.4

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----  103 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----  103 (606)
                      .|+++||++.|+.+.   ...+.+|+|||++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...    
T Consensus         2 ~l~~~~l~~~y~~~~---~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~   77 (287)
T PRK13637          2 SIKIENLTHIYMEGT---PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP-TSGKIIIDGVDITDKKVK   77 (287)
T ss_pred             EEEEEEEEEECCCCC---ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CccEEEECCEECCCcCcc
Confidence            488999999974210   0125799999999999999999999999999999999999877 59999999987532    


Q ss_pred             -hhhcccEEEEccCCC-CCCCCcHHHHHHHcCCccccCCccccCChHHH-HHHHHHHHHhcCCcc---cccCCCCCCCCc
Q psy13765        104 -NAFRRVSCYIQQDDR-LQPLLTIENVMSLLGLDESQNTRSSQLSGGQK-KRLSIALELINNPRV---MFLDEPTTSNPN  177 (606)
Q Consensus       104 -~~~~~~~~yv~Q~~~-l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqr-qRv~ia~~L~~~~~~---~~~de~~~~~s~  177 (606)
                       ...++.+|||+|++. .+...|+.+.+.. +...      .+++.-+. +++.   +++..-.+   -..|.+...+||
T Consensus        78 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~-~~~~------~~~~~~~~~~~~~---~~l~~~gL~~~~~~~~~~~~LSg  147 (287)
T PRK13637         78 LSDIRKKVGLVFQYPEYQLFEETIEKDIAF-GPIN------LGLSEEEIENRVK---RAMNIVGLDYEDYKDKSPFELSG  147 (287)
T ss_pred             HHHHhhceEEEecCchhccccccHHHHHHh-HHHH------CCCCHHHHHHHHH---HHHHHcCCCchhhccCCcccCCH
Confidence             345678999999973 2234688665542 2110      11233222 2333   33333233   246889999999


Q ss_pred             hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEE
Q psy13765        178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ  256 (606)
Q Consensus       178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~  256 (606)
                      |||||+.||+||+.+|++|+|||||+|||+.++..+.++|++++++ |+|||++||+++ .+.++|||+++|++|++++.
T Consensus       148 Gq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~~~  226 (287)
T PRK13637        148 GQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNKGKCELQ  226 (287)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEE
Confidence            9999999999999999999999999999999999999999999875 999999999976 46789999999999999999


Q ss_pred             cChhHHHH---HHHhCCCCCC
Q psy13765        257 GATDQLVN---YLSSVNLPCP  274 (606)
Q Consensus       257 G~~~~~~~---~f~~~g~~~~  274 (606)
                      |+++++.+   .+...|+..|
T Consensus       227 g~~~~~~~~~~~~~~~~~~~~  247 (287)
T PRK13637        227 GTPREVFKEVETLESIGLAVP  247 (287)
T ss_pred             CCHHHHHhCHHHHHHcCCCCC
Confidence            99988753   2334455443

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=100.00  E-value=2.7e-41  Score=338.40  Aligned_cols=212  Identities=26%  Similarity=0.369  Sum_probs=169.5

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC-----CCCCccEEEECCccCC-
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR-----SNGVTGQILTNGHSRN-  102 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~-----~~~~~G~I~~~G~~~~-  102 (606)
                      |+++||+++++        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.     ++ .+|+|.++|++.. 
T Consensus         1 i~~~~l~~~~~--------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~-~~G~i~~~g~~~~~   71 (227)
T cd03260           1 IELRDLNVYYG--------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP-DEGEVLLDGKDIYD   71 (227)
T ss_pred             CEEEEEEEEcC--------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC-CCeEEEECCEEhhh
Confidence            46899999862        357999999999999999999999999999999999997     55 5999999998643 


Q ss_pred             ----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCccc-ccCCC--CCC
Q psy13765        103 ----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM-FLDEP--TTS  174 (606)
Q Consensus       103 ----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~-~~de~--~~~  174 (606)
                          ...+++.++|++|++.++ .+|+.+.+... ... ..    ..+.. .++++.-+.+.+   ++- ..+.+  ...
T Consensus        72 ~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~-~~~-~~----~~~~~~~~~~~~~~l~~~---~l~~~~~~~~~~~~  141 (227)
T cd03260          72 LDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYG-LRL-HG----IKLKEELDERVEEALRKA---ALWDEVKDRLHALG  141 (227)
T ss_pred             cchHHHHHHhhEEEEecCchhc-cccHHHHHHhH-HHh-cC----CCcHHHHHHHHHHHHHHc---CCChHHhccCCccc
Confidence                234567899999999888 78987665431 110 00    01111 234443222322   221 23445  589


Q ss_pred             CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765        175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL  254 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~  254 (606)
                      +|||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||+++ .+.++||++++|++|+++
T Consensus       142 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~G~i~  219 (227)
T cd03260         142 LSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLNGRLV  219 (227)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeCCEEE
Confidence            9999999999999999999999999999999999999999999999887 99999999986 567899999999999999


Q ss_pred             EEcChhH
Q psy13765        255 YQGATDQ  261 (606)
Q Consensus       255 ~~G~~~~  261 (606)
                      +.|++++
T Consensus       220 ~~g~~~~  226 (227)
T cd03260         220 EFGPTEQ  226 (227)
T ss_pred             EecCccc
Confidence            9998765

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9e-41  Score=357.77  Aligned_cols=219  Identities=22%  Similarity=0.411  Sum_probs=181.1

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hh
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NA  105 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~  105 (606)
                      ..|+++|+++++        +++.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++... ..
T Consensus        18 ~~l~l~~v~~~~--------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p-~~G~I~i~g~~i~~~~~   88 (377)
T PRK11607         18 PLLEIRNLTKSF--------DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP-TAGQIMLDGVDLSHVPP   88 (377)
T ss_pred             ceEEEEeEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEECCEECCCCCH
Confidence            469999999987        235699999999999999999999999999999999999877 59999999987532 33


Q ss_pred             hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS  184 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~  184 (606)
                      .++.+|||+|++.++|.+||.+.+.. ++..      ...+..+ ++|+.-..+++.-.  -++|..+..|||||||||+
T Consensus        89 ~~r~ig~vfQ~~~lfp~ltv~eNi~~-~l~~------~~~~~~~~~~~v~~~l~~l~L~--~~~~~~~~~LSgGq~QRVa  159 (377)
T PRK11607         89 YQRPINMMFQSYALFPHMTVEQNIAF-GLKQ------DKLPKAEIASRVNEMLGLVHMQ--EFAKRKPHQLSGGQRQRVA  159 (377)
T ss_pred             HHCCEEEEeCCCccCCCCCHHHHHHH-HHHH------cCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHH
Confidence            56789999999999999999776643 2221      1123333 34543333333221  1568888899999999999


Q ss_pred             HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765        185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                      |||||+.+|++|+|||||+|||..++..+.+.|+++.++ |.|+|++|||+. ++..++|++++|++|+++..|+++++.
T Consensus       160 LARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~~~  238 (377)
T PRK11607        160 LARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPEEIY  238 (377)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence            999999999999999999999999999999999998764 899999999976 578999999999999999999999875


Q ss_pred             H
Q psy13765        264 N  264 (606)
Q Consensus       264 ~  264 (606)
                      +
T Consensus       239 ~  239 (377)
T PRK11607        239 E  239 (377)
T ss_pred             h
Confidence            4

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=4e-41  Score=333.85  Aligned_cols=209  Identities=22%  Similarity=0.400  Sum_probs=169.7

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhhc
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAFR  107 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~~  107 (606)
                      |+++|++++++        ++++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+... ...+
T Consensus         1 i~~~~l~~~~~--------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~v~~~g~~~~~~~~~~   71 (213)
T cd03301           1 VELENVTKRFG--------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP-TSGRIYIGGRDVTDLPPKD   71 (213)
T ss_pred             CEEEeeEEEEC--------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCcCCccc
Confidence            46899999873        35799999999999999999999999999999999999876 59999999986532 2234


Q ss_pred             ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHH
Q psy13765        108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSI  185 (606)
Q Consensus       108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~I  185 (606)
                      +.++|++|++.+++..|+.+.+... .. .     ...+..+ ++++.   +++..-++- ..|.+...+|+|||||+.|
T Consensus        72 ~~i~~~~q~~~~~~~~tv~~~l~~~-~~-~-----~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~G~~qr~~l  141 (213)
T cd03301          72 RDIAMVFQNYALYPHMTVYDNIAFG-LK-L-----RKVPKDEIDERVR---EVAELLQIEHLLDRKPKQLSGGQRQRVAL  141 (213)
T ss_pred             ceEEEEecChhhccCCCHHHHHHHH-HH-h-----cCCCHHHHHHHHH---HHHHHcCCHHHHhCChhhCCHHHHHHHHH
Confidence            6799999999999889987766432 11 0     0122222 33332   233322332 4688899999999999999


Q ss_pred             HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      |+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.++||++++|++|++++.|
T Consensus       142 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g  213 (213)
T cd03301         142 GRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG  213 (213)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence            99999999999999999999999999999999999874 899999999976 577899999999999998876

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=3e-41  Score=332.99  Aligned_cols=204  Identities=25%  Similarity=0.423  Sum_probs=160.3

Q ss_pred             EEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhccc
Q psy13765         30 KFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRV  109 (606)
Q Consensus        30 ~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~  109 (606)
                      +++|++++|+.       .+.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|.+......++.
T Consensus         1 ~~~~l~~~~~~-------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~   72 (205)
T cd03226           1 RIENISFSYKK-------GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE-SSGSILLNGKPIKAKERRKS   72 (205)
T ss_pred             CcccEEEEeCC-------cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEEhhhHHhhcc
Confidence            36789988631       15799999999999999999999999999999999999876 59999999987644455678


Q ss_pred             EEEEccCCCC-CCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHh
Q psy13765        110 SCYIQQDDRL-QPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALE  188 (606)
Q Consensus       110 ~~yv~Q~~~l-~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~a  188 (606)
                      ++|++|++.. +...|+.+.+... ...   .      +-+++++.-+.+.+.-.+  ..|.+...+|+|||||+.||+|
T Consensus        73 i~~~~q~~~~~~~~~tv~e~l~~~-~~~---~------~~~~~~~~~~l~~~~l~~--~~~~~~~~LS~G~~qrv~lara  140 (205)
T cd03226          73 IGYVMQDVDYQLFTDSVREELLLG-LKE---L------DAGNEQAETVLKDLDLYA--LKERHPLSLSGGQKQRLAIAAA  140 (205)
T ss_pred             eEEEecChhhhhhhccHHHHHhhh-hhh---c------CccHHHHHHHHHHcCCch--hcCCCchhCCHHHHHHHHHHHH
Confidence            9999999742 3456876655431 110   0      011233322222222111  4577888899999999999999


Q ss_pred             hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765        189 LINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL  254 (606)
Q Consensus       189 L~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~  254 (606)
                      |+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.++||++++|++|+++
T Consensus       141 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         141 LLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             HHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence            99999999999999999999999999999999878999999999987 467899999999999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=7.7e-41  Score=343.96  Aligned_cols=217  Identities=20%  Similarity=0.351  Sum_probs=175.5

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----  103 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----  103 (606)
                      .|+++||++.|        +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...    
T Consensus         7 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~   77 (269)
T PRK11831          7 LVDMRGVSFTR--------GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP-DHGEILFDGENIPAMSRS   77 (269)
T ss_pred             eEEEeCeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEccccChh
Confidence            58999999987        235699999999999999999999999999999999999876 59999999976531    


Q ss_pred             --hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchh
Q psy13765        104 --NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQ  179 (606)
Q Consensus       104 --~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~  179 (606)
                        ...++.++|++|++.+++.+|+.+.+... +... .    .++..+ ++++   .+++..-.+- .+|.+...|||||
T Consensus        78 ~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~-~~~~-~----~~~~~~~~~~~---~~~l~~~gl~~~~~~~~~~LSgGq  148 (269)
T PRK11831         78 RLYTVRKRMSMLFQSGALFTDMNVFDNVAYP-LREH-T----QLPAPLLHSTV---MMKLEAVGLRGAAKLMPSELSGGM  148 (269)
T ss_pred             hHHHHhhcEEEEecccccCCCCCHHHHHHHH-HHHc-c----CCCHHHHHHHH---HHHHHHcCChhhhhCChhhCCHHH
Confidence              12456799999999999999987765431 1100 0    112111 1222   2333322222 4678889999999


Q ss_pred             hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      |||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|++++.|+
T Consensus       149 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~g~  227 (269)
T PRK11831        149 ARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVADKKIVAHGS  227 (269)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEECCEEEEeCC
Confidence            99999999999999999999999999999999999999999775 899999999976 5778999999999999999999


Q ss_pred             hhHHH
Q psy13765        259 TDQLV  263 (606)
Q Consensus       259 ~~~~~  263 (606)
                      ++++.
T Consensus       228 ~~~~~  232 (269)
T PRK11831        228 AQALQ  232 (269)
T ss_pred             HHHHh
Confidence            88764

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=4.5e-41  Score=334.67  Aligned_cols=213  Identities=23%  Similarity=0.387  Sum_probs=171.2

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--hhhh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--INAF  106 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--~~~~  106 (606)
                      ++++|+++.++..    ...+++++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++..  ...+
T Consensus         2 l~~~~v~~~~~~~----~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~   76 (218)
T cd03266           2 ITADALTKRFRDV----KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP-DAGFATVDGFDVVKEPAEA   76 (218)
T ss_pred             eEEEEEEEecCCC----CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-CCceEEECCEEcccCHHHH
Confidence            6889999987421    0112699999999999999999999999999999999999876 5999999998653  2345


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHH
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLS  184 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~  184 (606)
                      ++.++|++|++.+++.+|+.+.+......       .+.+..+ ++++.   +++..-.+- .++++...+|+|||||++
T Consensus        77 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~G~~qrv~  146 (218)
T cd03266          77 RRRLGFVSDSTGLYDRLTARENLEYFAGL-------YGLKGDELTARLE---ELADRLGMEELLDRRVGGFSTGMRQKVA  146 (218)
T ss_pred             HhhEEEecCCcccCcCCCHHHHHHHHHHH-------cCCCHHHHHHHHH---HHHHHcCCHHHHhhhhhhcCHHHHHHHH
Confidence            67899999999999999997766532100       0112212 23333   222222332 467888899999999999


Q ss_pred             HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      ||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+++|++++|++|++++.|
T Consensus       147 laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~i~~~~  218 (218)
T cd03266         147 IARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG  218 (218)
T ss_pred             HHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence            999999999999999999999999999999999999878999999999976 577899999999999998754

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.8e-41  Score=339.94  Aligned_cols=221  Identities=26%  Similarity=0.377  Sum_probs=176.2

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-----
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-----  103 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-----  103 (606)
                      |+++||+++|+       .++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...     
T Consensus         2 l~~~~l~~~~~-------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~   73 (243)
T TIGR02315         2 LEVENLSKVYP-------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP-SSGSILLEGTDITKLRGKK   73 (243)
T ss_pred             eEEEeeeeecC-------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-CccEEEECCEEhhhCCHHH
Confidence            67899999862       135699999999999999999999999999999999999876 59999999976431     


Q ss_pred             -hhhcccEEEEccCCCCCCCCcHHHHHHHcCCcccc---CCccccCChHHHHHHHHHHHHhcCCcc-cccCCCCCCCCch
Q psy13765        104 -NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQ---NTRSSQLSGGQKKRLSIALELINNPRV-MFLDEPTTSNPND  178 (606)
Q Consensus       104 -~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~---~~~~~~lSgGqrqRv~ia~~L~~~~~~-~~~de~~~~~s~g  178 (606)
                       ..+++.++|++|++.+++.+|+.+.+.. +.....   ....+.....+++|+.   +++..-++ -..|.+...+|+|
T Consensus        74 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LSgG  149 (243)
T TIGR02315        74 LRKLRRRIGMIFQHYNLIERLTVLENVLH-GRLGYKPTWRSLLGRFSEEDKERAL---SALERVGLADKAYQRADQLSGG  149 (243)
T ss_pred             HHHHHhheEEEcCCCcccccccHHHHHhh-cccccccchhhhhccccHHHHHHHH---HHHHHcCcHhhhcCCcccCCHH
Confidence             2356789999999999999999776643 221110   0000011122334443   22222233 2568899999999


Q ss_pred             hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      ||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.++||++++|++|++++.|
T Consensus       150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~  228 (243)
T TIGR02315       150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKAGEIVFDG  228 (243)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence            999999999999999999999999999999999999999999764 899999999987 467899999999999999999


Q ss_pred             ChhHH
Q psy13765        258 ATDQL  262 (606)
Q Consensus       258 ~~~~~  262 (606)
                      +++++
T Consensus       229 ~~~~~  233 (243)
T TIGR02315       229 APSEL  233 (243)
T ss_pred             CHHHh
Confidence            98765

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-40  Score=343.42  Aligned_cols=228  Identities=28%  Similarity=0.370  Sum_probs=178.4

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~  104 (606)
                      .|+++|++++|+       +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..   ..
T Consensus         4 ~l~~~~l~~~~~-------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~   75 (274)
T PRK13647          4 IIEVEDLHFRYK-------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP-QRGRVKVMGREVNAENEK   75 (274)
T ss_pred             eEEEEEEEEEeC-------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CceEEEECCEECCCCCHH
Confidence            589999999873       124699999999999999999999999999999999999876 5999999998653   23


Q ss_pred             hhcccEEEEccCCC-CCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhH
Q psy13765        105 AFRRVSCYIQQDDR-LQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKR  182 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~-l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~kr  182 (606)
                      ..++.++||+|++. .++..|+.+.+.. +...      .+++..+ ++++.-+.+.+.-.  -..|.+...+|||||||
T Consensus        76 ~~~~~i~~v~q~~~~~~~~~tv~e~l~~-~~~~------~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgG~~qr  146 (274)
T PRK13647         76 WVRSKVGLVFQDPDDQVFSSTVWDDVAF-GPVN------MGLDKDEVERRVEEALKAVRMW--DFRDKPPYHLSYGQKKR  146 (274)
T ss_pred             HHHhhEEEEecChhhhhccCcHHHHHHh-hHHH------cCCCHHHHHHHHHHHHHHCCCH--HHhcCChhhCCHHHHHH
Confidence            45678999999973 3445688666542 2211      1233322 23333333332221  14678888999999999


Q ss_pred             HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765        183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL  262 (606)
Q Consensus       183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~  262 (606)
                      +.||+||+.+|++|+|||||+|||+.++.++.++|++++++|+|||++||+++ .+.++|||+++|++|++++.|+++++
T Consensus       147 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~  225 (274)
T PRK13647        147 VAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSLL  225 (274)
T ss_pred             HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHh
Confidence            99999999999999999999999999999999999999877999999999976 46689999999999999999998754


Q ss_pred             H--HHHHhCCCCC
Q psy13765        263 V--NYLSSVNLPC  273 (606)
Q Consensus       263 ~--~~f~~~g~~~  273 (606)
                      .  +.++..|...
T Consensus       226 ~~~~~~~~~~~~~  238 (274)
T PRK13647        226 TDEDIVEQAGLRL  238 (274)
T ss_pred             cCHHHHHHcCCCC
Confidence            2  2333445443

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.1e-41  Score=338.29  Aligned_cols=216  Identities=25%  Similarity=0.384  Sum_probs=175.8

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-----
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-----  102 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~-----  102 (606)
                      .++++|+++.|+        ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++..     
T Consensus         2 ~l~~~~l~~~~~--------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~   72 (242)
T PRK11124          2 SIQLNGINCFYG--------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP-RSGTLNIAGNHFDFSKTP   72 (242)
T ss_pred             EEEEEeeEEEEC--------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEeccccccc
Confidence            588999999873        35699999999999999999999999999999999999876 5999999998642     


Q ss_pred             ----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCC
Q psy13765        103 ----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNP  176 (606)
Q Consensus       103 ----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s  176 (606)
                          ....++.++|++|++.+++.+|+.+.+...... ..     +.+..+ +++   +.+++..-++- .+|.+...+|
T Consensus        73 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~-~~-----~~~~~~~~~~---~~~~l~~~gl~~~~~~~~~~LS  143 (242)
T PRK11124         73 SDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCR-VL-----GLSKDQALAR---AEKLLERLRLKPYADRFPLHLS  143 (242)
T ss_pred             chhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHH-Hc-----CCCHHHHHHH---HHHHHHHcCChhhhhCChhhCC
Confidence                123467899999999999999987765421110 00     011111 222   23333333332 5688888999


Q ss_pred             chhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEE
Q psy13765        177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ  256 (606)
Q Consensus       177 ~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~  256 (606)
                      +|||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. .+.+++|++++|++|++++.
T Consensus       144 ~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~i~~~  222 (242)
T PRK11124        144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQ  222 (242)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEe
Confidence            99999999999999999999999999999999999999999999877999999999987 46688999999999999999


Q ss_pred             cChhHH
Q psy13765        257 GATDQL  262 (606)
Q Consensus       257 G~~~~~  262 (606)
                      |+++++
T Consensus       223 ~~~~~~  228 (242)
T PRK11124        223 GDASCF  228 (242)
T ss_pred             CCHHHh
Confidence            998764

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.6e-40  Score=349.26  Aligned_cols=233  Identities=23%  Similarity=0.355  Sum_probs=181.9

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC----
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN----  102 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~----  102 (606)
                      ..|+++||++.|+.+.   ...+.+|+|||++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..    
T Consensus        20 ~~l~~~nl~~~y~~~~---~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p-~~G~I~i~g~~~~~~~~   95 (320)
T PRK13631         20 IILRVKNLYCVFDEKQ---ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS-KYGTIQVGDIYIGDKKN   95 (320)
T ss_pred             ceEEEEeEEEEeCCCC---cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEEECCEEcccccc
Confidence            4699999999985210   0124699999999999999999999999999999999999876 5999999997542    


Q ss_pred             ---------------hhhhcccEEEEccCC--CCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCc
Q psy13765        103 ---------------INAFRRVSCYIQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPR  164 (606)
Q Consensus       103 ---------------~~~~~~~~~yv~Q~~--~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~  164 (606)
                                     ...+++.++||+|++  .+++. |+.+.+. ++...      .+.+..+ ++|+.   +++..-+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~-~~~~~------~~~~~~~~~~~~~---~~l~~~g  164 (320)
T PRK13631         96 NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIM-FGPVA------LGVKKSEAKKLAK---FYLNKMG  164 (320)
T ss_pred             cccccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHH-hhHHh------cCCCHHHHHHHHH---HHHHHcC
Confidence                           134577899999987  45654 7766553 22211      0123222 23333   3333333


Q ss_pred             c--cccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q psy13765        165 V--MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMF  242 (606)
Q Consensus       165 ~--~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~  242 (606)
                      +  -.++++...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.|
T Consensus       165 L~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~~a  243 (320)
T PRK13631        165 LDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVA  243 (320)
T ss_pred             CChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhC
Confidence            3  1468888999999999999999999999999999999999999999999999999878999999999976 466899


Q ss_pred             ceeeeecCCcEEEEcChhHHHH---HHHhCCCCCCC
Q psy13765        243 DQVYLLSGGQCLYQGATDQLVN---YLSSVNLPCPK  275 (606)
Q Consensus       243 D~v~~L~~G~~~~~G~~~~~~~---~f~~~g~~~~~  275 (606)
                      |++++|++|+++..|+++++..   .++..|...|.
T Consensus       244 dri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~  279 (320)
T PRK13631        244 DEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR  279 (320)
T ss_pred             CEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence            9999999999999999987643   34445555443

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-40  Score=346.60  Aligned_cols=232  Identities=23%  Similarity=0.363  Sum_probs=180.6

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-----
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-----  102 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~-----  102 (606)
                      .++++||+++|+.+.   ...+++|+|||++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|++..     
T Consensus         2 ~l~~~~l~~~y~~~~---~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~   77 (290)
T PRK13634          2 DITFQKVEHRYQYKT---PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP-TSGTVTIGERVITAGKKN   77 (290)
T ss_pred             EEEEEEEEEEECCCC---cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEECCEECcccccc
Confidence            488999999984210   0125699999999999999999999999999999999999876 5999999998653     


Q ss_pred             --hhhhcccEEEEccCC--CCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc--cccCCCCCCC
Q psy13765        103 --INAFRRVSCYIQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV--MFLDEPTTSN  175 (606)
Q Consensus       103 --~~~~~~~~~yv~Q~~--~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~--~~~de~~~~~  175 (606)
                        ....++.+|||+|++  .+++ .|+.+.+.. +...      ..++.-+ ++++.   +++..-++  -++|.+...|
T Consensus        78 ~~~~~~~~~ig~v~q~~~~~l~~-~tv~eni~~-~~~~------~~~~~~~~~~~~~---~~l~~~gL~~~~~~~~~~~L  146 (290)
T PRK13634         78 KKLKPLRKKVGIVFQFPEHQLFE-ETVEKDICF-GPMN------FGVSEEDAKQKAR---EMIELVGLPEELLARSPFEL  146 (290)
T ss_pred             chHHHHHhhEEEEeeCchhhhhh-hhHHHHHHH-HHHH------cCCCHHHHHHHHH---HHHHHCCCChhhhhCCcccC
Confidence              234567899999986  4554 587665542 2110      0122222 23443   33333333  2468889999


Q ss_pred             CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765        176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCL  254 (606)
Q Consensus       176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~  254 (606)
                      |+|||||+.||+||+.+|++|+|||||+|||+.++..+.++|++++++ |.|||++||+++ .+.++|||+++|++|+++
T Consensus       147 SgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i~  225 (290)
T PRK13634        147 SGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGTVF  225 (290)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence            999999999999999999999999999999999999999999999875 999999999977 577899999999999999


Q ss_pred             EEcChhHHHH---HHHhCCCCCCC
Q psy13765        255 YQGATDQLVN---YLSSVNLPCPK  275 (606)
Q Consensus       255 ~~G~~~~~~~---~f~~~g~~~~~  275 (606)
                      +.|+++++.+   .+...+..+|.
T Consensus       226 ~~g~~~~~~~~~~~~~~~~~~~~~  249 (290)
T PRK13634        226 LQGTPREIFADPDELEAIGLDLPE  249 (290)
T ss_pred             EECCHHHHhcCHHHHHHCCCCCCH
Confidence            9999988742   34445555443

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-40  Score=347.79  Aligned_cols=223  Identities=25%  Similarity=0.356  Sum_probs=175.5

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC------
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR------  101 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~------  101 (606)
                      .|+++||+++|+.+.   .....+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+.      
T Consensus         2 ~i~~~~l~~~y~~~~---~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p-~~G~i~~~g~~~~~~~~~   77 (305)
T PRK13651          2 QIKVKNIVKIFNKKL---PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP-DTGTIEWIFKDEKNKKKT   77 (305)
T ss_pred             EEEEEEEEEEECCCC---CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCcEEEEeceeccccccc
Confidence            488999999985320   1124699999999999999999999999999999999999877 589999998643      


Q ss_pred             ---------------------ChhhhcccEEEEccCCC-CCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHH
Q psy13765        102 ---------------------NINAFRRVSCYIQQDDR-LQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALE  158 (606)
Q Consensus       102 ---------------------~~~~~~~~~~yv~Q~~~-l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~  158 (606)
                                           .....++.+|||+|++. .+...||.+.+. +++...      +++.- .++|+.-+.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~-~~~~~~------~~~~~~~~~~~~~~l~  150 (305)
T PRK13651         78 KEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDII-FGPVSM------GVSKEEAKKRAAKYIE  150 (305)
T ss_pred             ccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHH-hhHHHc------CCCHHHHHHHHHHHHH
Confidence                                 12345678999999852 233468866654 332210      12221 2344443333


Q ss_pred             HhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHH
Q psy13765        159 LINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATL  238 (606)
Q Consensus       159 L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i  238 (606)
                      .+.-.. -.+|.++..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++|||+. .+
T Consensus       151 ~~gL~~-~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~  228 (305)
T PRK13651        151 LVGLDE-SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD-NV  228 (305)
T ss_pred             HcCCCh-hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-HH
Confidence            332210 2578899999999999999999999999999999999999999999999999999878999999999976 47


Q ss_pred             HhhcceeeeecCCcEEEEcChhHHH
Q psy13765        239 FQMFDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       239 ~~~~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                      .+.|||+++|++|++++.|+++++.
T Consensus       229 ~~~adrv~vl~~G~i~~~g~~~~~~  253 (305)
T PRK13651        229 LEWTKRTIFFKDGKIIKDGDTYDIL  253 (305)
T ss_pred             HHhCCEEEEEECCEEEEECCHHHHh
Confidence            7899999999999999999998875

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=100.00  E-value=9e-41  Score=338.05  Aligned_cols=216  Identities=24%  Similarity=0.422  Sum_probs=175.8

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INA  105 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~  105 (606)
                      ++++|++++|+.       .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++..   ...
T Consensus         1 l~~~~l~~~~~~-------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~   72 (242)
T cd03295           1 IEFENVTKRYGG-------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP-TSGEIFIDGEDIREQDPVE   72 (242)
T ss_pred             CEEEEEEEEeCC-------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCeEcCcCChHH
Confidence            468999998731       15699999999999999999999999999999999999876 5999999998643   234


Q ss_pred             hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCccc---ccCCCCCCCCchhhh
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM---FLDEPTTSNPNDQKK  181 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~---~~de~~~~~s~g~~k  181 (606)
                      .++.++|++|++.+++.+|+.+.+.... . .     .+.+.. .++++   .+++..-.+-   ..|++...+|+||||
T Consensus        73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~-~-~-----~~~~~~~~~~~~---~~~l~~l~l~~~~~~~~~~~~LS~G~~q  142 (242)
T cd03295          73 LRRKIGYVIQQIGLFPHMTVEENIALVP-K-L-----LKWPKEKIRERA---DELLALVGLDPAEFADRYPHELSGGQQQ  142 (242)
T ss_pred             hhcceEEEccCccccCCCcHHHHHHHHH-H-H-----cCCCHHHHHHHH---HHHHHHcCCCcHHHHhcChhhCCHHHHH
Confidence            5678999999999999999976664321 0 0     111211 22333   2333333332   468888999999999


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD  260 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~  260 (606)
                      |+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+++|++++|++|++++.|+++
T Consensus       143 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~  221 (242)
T cd03295         143 RVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPD  221 (242)
T ss_pred             HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHH
Confidence            999999999999999999999999999999999999999875 899999999986 567899999999999999999987


Q ss_pred             HHH
Q psy13765        261 QLV  263 (606)
Q Consensus       261 ~~~  263 (606)
                      ++.
T Consensus       222 ~~~  224 (242)
T cd03295         222 EIL  224 (242)
T ss_pred             HHH
Confidence            764

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.1e-41  Score=336.89  Aligned_cols=216  Identities=21%  Similarity=0.391  Sum_probs=175.4

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---h
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---N  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~  104 (606)
                      .++++|++++++        .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++...   .
T Consensus         5 ~l~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~   75 (237)
T PRK11614          5 MLSFDKVSAHYG--------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA-TSGRIVFDGKDITDWQTA   75 (237)
T ss_pred             EEEEEeEEEeeC--------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-CCceEEECCEecCCCCHH
Confidence            589999999872        35799999999999999999999999999999999999876 59999999986532   2


Q ss_pred             -hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhH
Q psy13765        105 -AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKR  182 (606)
Q Consensus       105 -~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~kr  182 (606)
                       ..++.++|++|++.+++.+|+.+.+......  .+      ..-.++++.-+.+.+.  .+. ..+.+...+|+|||||
T Consensus        76 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~--~~------~~~~~~~~~~~l~~~~--~l~~~~~~~~~~LS~G~~qr  145 (237)
T PRK11614         76 KIMREAVAIVPEGRRVFSRMTVEENLAMGGFF--AE------RDQFQERIKWVYELFP--RLHERRIQRAGTMSGGEQQM  145 (237)
T ss_pred             HHHHhCEEEeccCcccCCCCcHHHHHHHhhhc--cC------hhHHHHHHHHHHHHHH--HHHHHHhCchhhCCHHHHHH
Confidence             2456799999999999989987766442110  00      0111222222222221  011 3467888999999999


Q ss_pred             HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765        183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL  262 (606)
Q Consensus       183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~  262 (606)
                      +.||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.||++++|++|++++.|+++++
T Consensus       146 l~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~  224 (237)
T PRK11614        146 LAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLENGHVVLEDTGDAL  224 (237)
T ss_pred             HHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCCHHHH
Confidence            99999999999999999999999999999999999999888999999999976 57799999999999999999999877


Q ss_pred             H
Q psy13765        263 V  263 (606)
Q Consensus       263 ~  263 (606)
                      .
T Consensus       225 ~  225 (237)
T PRK11614        225 L  225 (237)
T ss_pred             h
Confidence            4

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-40  Score=343.53  Aligned_cols=227  Identities=25%  Similarity=0.374  Sum_probs=179.4

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~  104 (606)
                      .|+++||+++|+.+     +.+.+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..   ..
T Consensus         4 ~l~~~~l~~~~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~   77 (279)
T PRK13650          4 IIEVKNLTFKYKED-----QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA-ESGQIIIDGDLLTEENVW   77 (279)
T ss_pred             eEEEEeEEEEcCCC-----CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEECCcCcHH
Confidence            58999999997421     224699999999999999999999999999999999999877 5999999998753   23


Q ss_pred             hhcccEEEEccCCC-CCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhh
Q psy13765        105 AFRRVSCYIQQDDR-LQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKK  181 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~-l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~k  181 (606)
                      ..++.++||+|++. .++..|+.+.+.. +...      .+++.-+ ++++.-+.+.   -++- ..|.++..+||||||
T Consensus        78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~-~~~~------~~~~~~~~~~~~~~~l~~---~gL~~~~~~~~~~LSgGq~q  147 (279)
T PRK13650         78 DIRHKIGMVFQNPDNQFVGATVEDDVAF-GLEN------KGIPHEEMKERVNEALEL---VGMQDFKEREPARLSGGQKQ  147 (279)
T ss_pred             HHHhhceEEEcChHHhcccccHHHHHHh-hHHh------CCCCHHHHHHHHHHHHHH---CCCHhHhhCCcccCCHHHHH
Confidence            45678999999973 6677788766542 2211      1122222 2333322222   2332 468888999999999


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD  260 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~  260 (606)
                      |+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++. + ..||++++|++|+++..|+++
T Consensus       148 rv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~-~-~~~dri~~l~~G~i~~~g~~~  225 (279)
T PRK13650        148 RVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-V-ALSDRVLVMKNGQVESTSTPR  225 (279)
T ss_pred             HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEECCHH
Confidence            999999999999999999999999999999999999999875 9999999999864 5 579999999999999999998


Q ss_pred             HHHH---HHHhCCCC
Q psy13765        261 QLVN---YLSSVNLP  272 (606)
Q Consensus       261 ~~~~---~f~~~g~~  272 (606)
                      ++.+   .++..|++
T Consensus       226 ~~~~~~~~~~~~~~~  240 (279)
T PRK13650        226 ELFSRGNDLLQLGLD  240 (279)
T ss_pred             HHHcChHHHHHcCCC
Confidence            7653   23444544

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=100.00  E-value=1.8e-40  Score=338.80  Aligned_cols=217  Identities=23%  Similarity=0.361  Sum_probs=176.3

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-----
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-----  102 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~-----  102 (606)
                      .|+++||++.++        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..     
T Consensus         5 ~l~~~~l~~~~~--------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~   75 (257)
T PRK10619          5 KLNVIDLHKRYG--------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP-SEGSIVVNGQTINLVRDK   75 (257)
T ss_pred             cEEEeeeEEEEC--------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEccccccc
Confidence            489999999873        35799999999999999999999999999999999999876 5899999997542     


Q ss_pred             -----------hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc--cc
Q psy13765        103 -----------INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM--FL  168 (606)
Q Consensus       103 -----------~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~--~~  168 (606)
                                 ...+++.++|++|++.+++.+|+.+.+.... ....     ....-+ ++++   .+++..-.+-  ..
T Consensus        76 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~-~~~~-----~~~~~~~~~~~---~~~l~~~gl~~~~~  146 (257)
T PRK10619         76 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAP-IQVL-----GLSKQEARERA---VKYLAKVGIDERAQ  146 (257)
T ss_pred             ccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHH-HHhC-----CCCHHHHHHHH---HHHHHHcCCChhhh
Confidence                       1245678999999999999999866654211 0000     111111 2333   2333332331  24


Q ss_pred             CCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeee
Q psy13765        169 DEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL  248 (606)
Q Consensus       169 de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L  248 (606)
                      +.+...+|+|||||+.||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++|||+++|
T Consensus       147 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l  225 (257)
T PRK10619        147 GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFL  225 (257)
T ss_pred             hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEE
Confidence            7888999999999999999999999999999999999999999999999999878999999999976 577789999999


Q ss_pred             cCCcEEEEcChhHHH
Q psy13765        249 SGGQCLYQGATDQLV  263 (606)
Q Consensus       249 ~~G~~~~~G~~~~~~  263 (606)
                      ++|++++.|+++++.
T Consensus       226 ~~G~i~~~~~~~~~~  240 (257)
T PRK10619        226 HQGKIEEEGAPEQLF  240 (257)
T ss_pred             ECCEEEEeCCHHHhh
Confidence            999999999988764

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=7.1e-41  Score=333.24  Aligned_cols=208  Identities=29%  Similarity=0.444  Sum_probs=164.3

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---h-
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---N-  104 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~-  104 (606)
                      |+++||+++|+.+    .+.+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...   . 
T Consensus         1 l~~~~l~~~~~~~----~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~-~~G~i~~~g~~~~~~~~~~   75 (218)
T cd03255           1 IELKNLSKTYGGG----GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP-TSGEVRVDGTDISKLSEKE   75 (218)
T ss_pred             CeEeeeEEEecCC----CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC-CceeEEECCEehhhcchhH
Confidence            4689999987421    0115799999999999999999999999999999999999876 59999999986532   1 


Q ss_pred             --h-hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCccc-ccCCCCCCCCchh
Q psy13765        105 --A-FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM-FLDEPTTSNPNDQ  179 (606)
Q Consensus       105 --~-~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~  179 (606)
                        . .++.++|++|++.+++.+|+.+.+.... ..      .+.+.. .++++.   +++..-.+- .+|.+...+|+||
T Consensus        76 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~-~~------~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~G~  145 (218)
T cd03255          76 LAAFRRRHIGFVFQSFNLLPDLTALENVELPL-LL------AGVPKKERRERAE---ELLERVGLGDRLNHYPSELSGGQ  145 (218)
T ss_pred             HHHHHhhcEEEEeeccccCCCCcHHHHHHHHH-hh------cCCCHHHHHHHHH---HHHHHcCCchhhhcChhhcCHHH
Confidence              1 3467999999999999999977665421 00      011111 223333   222222332 4578888999999


Q ss_pred             hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765        180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQC  253 (606)
Q Consensus       180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~  253 (606)
                      |||+.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||+++|+++. +. .||++++|++|++
T Consensus       146 ~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~-~~d~v~~l~~G~i  218 (218)
T cd03255         146 QQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-AE-YADRIIELRDGKI  218 (218)
T ss_pred             HHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-Hh-hhcEEEEeeCCcC
Confidence            9999999999999999999999999999999999999999987 58999999999874 54 8999999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-40  Score=335.70  Aligned_cols=217  Identities=21%  Similarity=0.414  Sum_probs=176.4

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----  103 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----  103 (606)
                      .++++|++++++        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...    
T Consensus         3 ~l~~~~l~~~~~--------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~   73 (241)
T PRK10895          3 TLTAKNLAKAYK--------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR-DAGNIIIDDEDISLLPLH   73 (241)
T ss_pred             eEEEeCcEEEeC--------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCCCCHH
Confidence            588999999873        35799999999999999999999999999999999999876 59999999986532    


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCcc-cccCCCCCCCCchhhh
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRV-MFLDEPTTSNPNDQKK  181 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~k  181 (606)
                      ...++.++|++|++.+++.+|+.+.+... .. . .   ..++.. .++++.   +++..-.+ -..+.+...+|+||||
T Consensus        74 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~-~~-~-~---~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~G~~q  144 (241)
T PRK10895         74 ARARRGIGYLPQEASIFRRLSVYDNLMAV-LQ-I-R---DDLSAEQREDRAN---ELMEEFHIEHLRDSMGQSLSGGERR  144 (241)
T ss_pred             HHHHhCeEEeccCCcccccCcHHHHHhhh-hh-c-c---cccCHHHHHHHHH---HHHHHcCCHHHhhcchhhCCHHHHH
Confidence            22456799999999999989987665432 10 0 0   011211 123332   33332222 1457888999999999


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ  261 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~  261 (606)
                      |+.||+||+.+|++|+|||||+|||+.++..+.+.+++++++|+|||+++|++. .+.+.||++++|++|++++.|++++
T Consensus       145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~  223 (241)
T PRK10895        145 RVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQGHLIAHGTPTE  223 (241)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeCCeEEeeCCHHH
Confidence            999999999999999999999999999999999999999878999999999976 5778999999999999999999887


Q ss_pred             HH
Q psy13765        262 LV  263 (606)
Q Consensus       262 ~~  263 (606)
                      +.
T Consensus       224 ~~  225 (241)
T PRK10895        224 IL  225 (241)
T ss_pred             Hh
Confidence            64

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-40  Score=343.79  Aligned_cols=221  Identities=24%  Similarity=0.383  Sum_probs=176.1

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----  103 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----  103 (606)
                      .++++||++.|+.+.   ...+.+|+|||++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...    
T Consensus         2 ~l~~~~l~~~y~~~~---~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p-~~G~i~~~g~~i~~~~~~   77 (286)
T PRK13646          2 TIRFDNVSYTYQKGT---PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP-TTGTVTVDDITITHKTKD   77 (286)
T ss_pred             EEEEEEEEEEECCCC---ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEECcccccc
Confidence            589999999984210   0124699999999999999999999999999999999999876 59999999986531    


Q ss_pred             ---hhhcccEEEEccCC--CCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc--ccCCCCCCC
Q psy13765        104 ---NAFRRVSCYIQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM--FLDEPTTSN  175 (606)
Q Consensus       104 ---~~~~~~~~yv~Q~~--~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~--~~de~~~~~  175 (606)
                         ..+++.+|||+|++  .+++ .|+.+.+.. +...      .+++..+ +++   +.+++..-++-  ..|.+...+
T Consensus        78 ~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~-~~~~------~~~~~~~~~~~---~~~~l~~~gL~~~~~~~~~~~L  146 (286)
T PRK13646         78 KYIRPVRKRIGMVFQFPESQLFE-DTVEREIIF-GPKN------FKMNLDEVKNY---AHRLLMDLGFSRDVMSQSPFQM  146 (286)
T ss_pred             chHHHHHhheEEEecChHhccch-hhHHHHHHh-hHHH------cCCCHHHHHHH---HHHHHHHcCCChhhhhCCcccC
Confidence               34677899999986  4555 477665542 2111      1123322 223   33444443442  567888999


Q ss_pred             CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765        176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQCL  254 (606)
Q Consensus       176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~  254 (606)
                      |+|||||+.||+||+.+|++|+|||||+|||+.++..+.++|+++++ +|+|||++||+++ .+.++||++++|++|+++
T Consensus       147 SgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i~  225 (286)
T PRK13646        147 SGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGSIV  225 (286)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEE
Confidence            99999999999999999999999999999999999999999999986 4999999999976 467899999999999999


Q ss_pred             EEcChhHHHH
Q psy13765        255 YQGATDQLVN  264 (606)
Q Consensus       255 ~~G~~~~~~~  264 (606)
                      +.|+++++.+
T Consensus       226 ~~g~~~~~~~  235 (286)
T PRK13646        226 SQTSPKELFK  235 (286)
T ss_pred             EECCHHHHHh
Confidence            9999988653

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.3e-40  Score=336.09  Aligned_cols=217  Identities=26%  Similarity=0.373  Sum_probs=173.2

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC----CccEEEECCccCC--
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG----VTGQILTNGHSRN--  102 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~----~~G~I~~~G~~~~--  102 (606)
                      ++++||+++|+        ++.+++|+|+++++||+++|+||||||||||+++|+|+.++.    .+|+|.++|++..  
T Consensus         2 l~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~   73 (247)
T TIGR00972         2 IEIENLNLFYG--------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDK   73 (247)
T ss_pred             EEEEEEEEEEC--------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcccc
Confidence            68999999873        346999999999999999999999999999999999998752    1899999998653  


Q ss_pred             ---hhhhcccEEEEccCCCCCCCCcHHHHHHH-cCCccccCCccccCChHH-HHHHHHHHHHhcCC-cc-cccCCCCCCC
Q psy13765        103 ---INAFRRVSCYIQQDDRLQPLLTIENVMSL-LGLDESQNTRSSQLSGGQ-KKRLSIALELINNP-RV-MFLDEPTTSN  175 (606)
Q Consensus       103 ---~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~-~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~-~~-~~~de~~~~~  175 (606)
                         ....++.++|++|++.+++ .|+.+.+.. .....       ..+..+ ++++.-+.+.+.-. .+ -.+|.+...+
T Consensus        74 ~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~-------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L  145 (247)
T TIGR00972        74 KIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG-------IKDKKELDEIVEESLKKAALWDEVKDRLHDSALGL  145 (247)
T ss_pred             ccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC-------CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccC
Confidence               2345678999999999988 888665542 11100       012122 23333222222211 11 2468889999


Q ss_pred             CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765        176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY  255 (606)
Q Consensus       176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~  255 (606)
                      |+|||||+.||+||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||++++|++|++++
T Consensus       146 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~  223 (247)
T TIGR00972       146 SGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYDGELVE  223 (247)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999999977 489999999987 5778999999999999999


Q ss_pred             EcChhHHH
Q psy13765        256 QGATDQLV  263 (606)
Q Consensus       256 ~G~~~~~~  263 (606)
                      .|+++++.
T Consensus       224 ~~~~~~~~  231 (247)
T TIGR00972       224 YGPTEQIF  231 (247)
T ss_pred             eCCHHHHH
Confidence            99988764

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=2.4e-40  Score=349.22  Aligned_cols=229  Identities=21%  Similarity=0.318  Sum_probs=182.0

Q ss_pred             eEEEEEeeEEEEecCCc-----ccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC
Q psy13765         27 IEIKFKDLTYTVSTGLG-----FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR  101 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~-----~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~  101 (606)
                      ..|+++||+++|..+.+     ...+.+.+++|||++|++||+++|+|+||||||||+++|+|+.++ .+|+|.++|++.
T Consensus         7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p-~~G~I~~~G~~i   85 (331)
T PRK15079          7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA-TDGEVAWLGKDL   85 (331)
T ss_pred             ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC-CCcEEEECCEEC
Confidence            46999999999853211     011235799999999999999999999999999999999999876 599999999865


Q ss_pred             Ch------hhhcccEEEEccCC--CCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc--cccCCC
Q psy13765        102 NI------NAFRRVSCYIQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV--MFLDEP  171 (606)
Q Consensus       102 ~~------~~~~~~~~yv~Q~~--~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~--~~~de~  171 (606)
                      ..      ..+++.++||+|++  .++|.+|+.+.+... +....    ..++..+.+  ..+.+++..-.+  -++|..
T Consensus        86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~-l~~~~----~~~~~~~~~--~~~~~~l~~vgl~~~~~~~~  158 (331)
T PRK15079         86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEP-LRTYH----PKLSRQEVK--DRVKAMMLKVGLLPNLINRY  158 (331)
T ss_pred             CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHH-HHHhc----cCCCHHHHH--HHHHHHHHHcCCChHHhcCC
Confidence            31      23567899999998  688899987765431 11000    113333322  122344433333  257888


Q ss_pred             CCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecC
Q psy13765        172 TTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSG  250 (606)
Q Consensus       172 ~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~  250 (606)
                      ...||||||||+.||+||+.+|++|++||||+|||..++.+++++|++++++ |.|+|++|||+. .+.++||++++|.+
T Consensus       159 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~  237 (331)
T PRK15079        159 PHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL  237 (331)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence            8999999999999999999999999999999999999999999999999875 999999999986 57789999999999


Q ss_pred             CcEEEEcChhHHHH
Q psy13765        251 GQCLYQGATDQLVN  264 (606)
Q Consensus       251 G~~~~~G~~~~~~~  264 (606)
                      |++++.|+++++.+
T Consensus       238 G~ive~g~~~~i~~  251 (331)
T PRK15079        238 GHAVELGTYDEVYH  251 (331)
T ss_pred             CEEEEEcCHHHHHc
Confidence            99999999988753

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-40  Score=338.51  Aligned_cols=207  Identities=25%  Similarity=0.365  Sum_probs=170.5

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF  106 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~  106 (606)
                      ..|+++||+++|.        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+.  ..+
T Consensus        11 ~~l~i~~l~~~~~--------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p-~~G~i~~~g~~~--~~~   79 (257)
T PRK11247         11 TPLLLNAVSKRYG--------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP-SAGELLAGTAPL--AEA   79 (257)
T ss_pred             CcEEEEEEEEEEC--------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEH--HHh
Confidence            3589999999873        35799999999999999999999999999999999999876 599999999754  345


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHH
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSI  185 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~I  185 (606)
                      ++.++|++|++.+++.+|+.+.+... +..           ..++++.   +++..-.+- .++.+...+|||||||+.|
T Consensus        80 ~~~i~~v~q~~~l~~~~tv~enl~~~-~~~-----------~~~~~~~---~~l~~~gl~~~~~~~~~~LSgGqkqrl~l  144 (257)
T PRK11247         80 REDTRLMFQDARLLPWKKVIDNVGLG-LKG-----------QWRDAAL---QALAAVGLADRANEWPAALSGGQKQRVAL  144 (257)
T ss_pred             hCceEEEecCccCCCCCcHHHHHHhc-ccc-----------hHHHHHH---HHHHHcCChhHhcCChhhCCHHHHHHHHH
Confidence            67899999999999988987766531 110           0122322   222222221 4577888899999999999


Q ss_pred             HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765        186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD  260 (606)
Q Consensus       186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~  260 (606)
                      |+||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||+++|++. .+.++||++++|++|++++.|+.+
T Consensus       145 araL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~  219 (257)
T PRK11247        145 ARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD  219 (257)
T ss_pred             HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence            9999999999999999999999999999999999865 4899999999976 467899999999999999988754

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=1.6e-40  Score=329.82  Aligned_cols=205  Identities=25%  Similarity=0.385  Sum_probs=164.7

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-----
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-----  103 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-----  103 (606)
                      |+++|++++++       +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...     
T Consensus         2 l~~~~l~~~~~-------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~-~~G~i~~~g~~~~~~~~~~   73 (214)
T TIGR02673         2 IEFHNVSKAYP-------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP-SRGQVRIAGEDVNRLRGRQ   73 (214)
T ss_pred             EEEEeeeEEeC-------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEcccCCHHH
Confidence            78999999873       235699999999999999999999999999999999999876 59999999986531     


Q ss_pred             -hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhh
Q psy13765        104 -NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQK  180 (606)
Q Consensus       104 -~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~  180 (606)
                       ..+++.++|++|++.+++.+|+.+.+.... . .     .+....+ ++++.   +++..-.+- ..+.++..+|+|||
T Consensus        74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~-~-~-----~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~G~~  143 (214)
T TIGR02673        74 LPLLRRRIGVVFQDFRLLPDRTVYENVALPL-E-V-----RGKKEREIQRRVG---AALRQVGLEHKADAFPEQLSGGEQ  143 (214)
T ss_pred             HHHHHhheEEEecChhhccCCcHHHHHHHHH-H-H-----cCCCHHHHHHHHH---HHHHHcCChhhhhCChhhCCHHHH
Confidence             135678999999999999899877654320 0 0     0111111 23332   222222221 45777889999999


Q ss_pred             hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765        181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ  252 (606)
Q Consensus       181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~  252 (606)
                      ||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+
T Consensus       144 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       144 QRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDGR  214 (214)
T ss_pred             HHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence            9999999999999999999999999999999999999999878999999999986 5778999999999885

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=100.00  E-value=1.1e-40  Score=342.92  Aligned_cols=205  Identities=18%  Similarity=0.294  Sum_probs=165.2

Q ss_pred             cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---hh----hcccEEEEccCCCC
Q psy13765         47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---NA----FRRVSCYIQQDDRL  119 (606)
Q Consensus        47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~~----~~~~~~yv~Q~~~l  119 (606)
                      +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...   ..    .++.++|++|++.+
T Consensus        35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p-~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~  113 (269)
T cd03294          35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP-TSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFAL  113 (269)
T ss_pred             CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEccccChhhhhhhhcCcEEEEecCccc
Confidence            456799999999999999999999999999999999999876 59999999986431   11    23579999999999


Q ss_pred             CCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHHHHhhhcCCcEEE
Q psy13765        120 QPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSIALELINNPRVMF  197 (606)
Q Consensus       120 ~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~IA~aL~~~P~lll  197 (606)
                      ++.+|+.+.+... +. .     .....-+ ++++   .+++..-.+- .++.+...+|+|||||+.||+||+.+|++|+
T Consensus       114 ~~~~tv~e~l~~~-~~-~-----~~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~ill  183 (269)
T cd03294         114 LPHRTVLENVAFG-LE-V-----QGVPRAEREERA---AEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILL  183 (269)
T ss_pred             CCCCcHHHHHHHH-HH-h-----cCCCHHHHHHHH---HHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            9999997766431 10 0     0011111 2222   2233322332 4678888999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765        198 LDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       198 LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                      |||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.++||++++|++|++++.|+++++.
T Consensus       184 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~  249 (269)
T cd03294         184 MDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEIL  249 (269)
T ss_pred             EcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence            99999999999999999999999764 899999999976 577899999999999999999988764

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.9e-40  Score=341.13  Aligned_cols=228  Identities=31%  Similarity=0.462  Sum_probs=180.5

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-----
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-----  102 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~-----  102 (606)
                      .|+++|++++|+       +++.+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|++..     
T Consensus         5 ~l~~~~l~~~~~-------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p-~~G~i~i~g~~~~~~~~~   76 (283)
T PRK13636          5 ILKVEELNYNYS-------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP-SSGRILFDGKPIDYSRKG   76 (283)
T ss_pred             eEEEEeEEEEeC-------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CccEEEECCEECCCCcch
Confidence            589999999973       235699999999999999999999999999999999999876 5999999998752     


Q ss_pred             hhhhcccEEEEccCCC-CCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchh
Q psy13765        103 INAFRRVSCYIQQDDR-LQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQ  179 (606)
Q Consensus       103 ~~~~~~~~~yv~Q~~~-l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~  179 (606)
                      ...+++.+||++|++. .....|+.+.+.. +...      .+++..+ ++++.-+.+.   -++- ..|.+...+|+||
T Consensus        77 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~-~~~~------~~~~~~~~~~~~~~~l~~---~gL~~~~~~~~~~LS~G~  146 (283)
T PRK13636         77 LMKLRESVGMVFQDPDNQLFSASVYQDVSF-GAVN------LKLPEDEVRKRVDNALKR---TGIEHLKDKPTHCLSFGQ  146 (283)
T ss_pred             HHHHHhhEEEEecCcchhhccccHHHHHHh-HHHH------cCCCHHHHHHHHHHHHHH---CCChhhhhCCcccCCHHH
Confidence            2346678999999973 2334688665543 1110      1233333 2343333232   2332 5688999999999


Q ss_pred             hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      |||+.||+||+.+|++|+|||||+|||+.++..+.++|++++++ |+|||+++|+++ .+.++|||+++|++|++++.|+
T Consensus       147 ~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~G~i~~~g~  225 (283)
T PRK13636        147 KKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQGN  225 (283)
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence            99999999999999999999999999999999999999999875 899999999987 4667999999999999999999


Q ss_pred             hhHHHH---HHHhCCCCCC
Q psy13765        259 TDQLVN---YLSSVNLPCP  274 (606)
Q Consensus       259 ~~~~~~---~f~~~g~~~~  274 (606)
                      ++++.+   .+...+.++|
T Consensus       226 ~~~~~~~~~~~~~~~~~~~  244 (283)
T PRK13636        226 PKEVFAEKEMLRKVNLRLP  244 (283)
T ss_pred             HHHHhcCHHHHHHcCCCCC
Confidence            988754   2334455443

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=100.00  E-value=4e-40  Score=332.11  Aligned_cols=216  Identities=23%  Similarity=0.358  Sum_probs=172.7

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh--hhh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--NAF  106 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--~~~  106 (606)
                      ++++|++++++        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...  ...
T Consensus         2 l~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~i~~~~~~~   72 (236)
T TIGR03864         2 LEVAGLSFAYG--------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA-QEGQISVAGHDLRRAPRAA   72 (236)
T ss_pred             EEEEeeEEEEC--------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEECCEEcccCChhh
Confidence            67899999873        35699999999999999999999999999999999999876 59999999976431  223


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHH
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSI  185 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~I  185 (606)
                      ++.++|++|++.+++.+|+.+.+......       .+.+.-+  ....+.+++..-.+- .+|.+...+|+|||||+.|
T Consensus        73 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~-------~~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~l  143 (236)
T TIGR03864        73 LARLGVVFQQPTLDLDLSVRQNLRYHAAL-------HGLSRAE--ARERIAALLARLGLAERADDKVRELNGGHRRRVEI  143 (236)
T ss_pred             hhhEEEeCCCCCCcccCcHHHHHHHHHHh-------cCCCHHH--HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHH
Confidence            45799999999988889987665432110       0111111  111223333332332 4678888999999999999


Q ss_pred             HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      |+||+.+|++++|||||+|||+.++..+.+.|+++++ +|.|||+++|+++. +. .+|++++|++|++++.|+++++.+
T Consensus       144 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l~~G~i~~~~~~~~~~~  221 (236)
T TIGR03864       144 ARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVLHRGRVLADGAAAELRG  221 (236)
T ss_pred             HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEEeCCeEEEeCCHHHHHH
Confidence            9999999999999999999999999999999999985 58999999999874 54 599999999999999999887654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.6e-40  Score=347.55  Aligned_cols=226  Identities=22%  Similarity=0.347  Sum_probs=181.1

Q ss_pred             EEEEEeeEEEEecCCcc--cccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh--
Q psy13765         28 EIKFKDLTYTVSTGLGF--KQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--  103 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~--~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--  103 (606)
                      .|+++||++.|+.+.+.  ..+.+.+|+|||++|++||+++|+|+||||||||+++|+|+.++ .+|+|.++|++...  
T Consensus         5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p-~~G~i~~~g~~l~~~~   83 (327)
T PRK11308          5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP-TGGELYYQGQDLLKAD   83 (327)
T ss_pred             eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC-CCcEEEECCEEcCcCC
Confidence            58999999998532110  01235799999999999999999999999999999999999876 58999999986531  


Q ss_pred             ----hhhcccEEEEccCC--CCCCCCcHHHHHHHc-CCccccCCccccCChHHHHHHHHHHHHhcCCcc--cccCCCCCC
Q psy13765        104 ----NAFRRVSCYIQQDD--RLQPLLTIENVMSLL-GLDESQNTRSSQLSGGQKKRLSIALELINNPRV--MFLDEPTTS  174 (606)
Q Consensus       104 ----~~~~~~~~yv~Q~~--~l~~~ltv~~~l~~~-gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~--~~~de~~~~  174 (606)
                          ..+++.++||+|++  .+.|.+|+.+.+... ...       ..++..++  -..+.+++..-.+  -.+|.....
T Consensus        84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~-------~~~~~~~~--~~~~~~~l~~~gL~~~~~~~~p~~  154 (327)
T PRK11308         84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN-------TSLSAAER--REKALAMMAKVGLRPEHYDRYPHM  154 (327)
T ss_pred             HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc-------cCCCHHHH--HHHHHHHHHHCCCChHHhcCCCcc
Confidence                24567899999998  588999997766431 111       01222222  1223344443333  256888999


Q ss_pred             CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765        175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQC  253 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~  253 (606)
                      ||||||||+.||+||+.+|++|++||||+|||..++.+++++|++++++ |.|+|++|||+. .+.++||++++|.+|++
T Consensus       155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~G~i  233 (327)
T PRK11308        155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYLGRC  233 (327)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence            9999999999999999999999999999999999999999999999875 999999999976 56789999999999999


Q ss_pred             EEEcChhHHHH
Q psy13765        254 LYQGATDQLVN  264 (606)
Q Consensus       254 ~~~G~~~~~~~  264 (606)
                      ++.|+++++.+
T Consensus       234 ve~g~~~~~~~  244 (327)
T PRK11308        234 VEKGTKEQIFN  244 (327)
T ss_pred             EEECCHHHHhc
Confidence            99999988754

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=100.00  E-value=1.7e-40  Score=329.50  Aligned_cols=206  Identities=24%  Similarity=0.365  Sum_probs=164.9

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-----
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-----  103 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-----  103 (606)
                      ++++|++++|+       +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...     
T Consensus         1 l~~~~l~~~~~-------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~~~~   72 (214)
T cd03292           1 IEFINVTKTYP-------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP-TSGTIRVNGQDVSDLRGRA   72 (214)
T ss_pred             CEEEEEEEEeC-------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEEcccCCHHH
Confidence            46899999873       125699999999999999999999999999999999999876 59999999986431     


Q ss_pred             -hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhh
Q psy13765        104 -NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQK  180 (606)
Q Consensus       104 -~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~  180 (606)
                       ...++.++|++|++.+++.+|+.+.+... ...      ...+.-+ ++++.   +++..-.+- .+|.+...+|+|||
T Consensus        73 ~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~-~~~------~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~G~~  142 (214)
T cd03292          73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFA-LEV------TGVPPREIRKRVP---AALELVGLSHKHRALPAELSGGEQ  142 (214)
T ss_pred             HHHHHHheEEEecCchhccCCcHHHHHHHH-HHH------cCCCHHHHHHHHH---HHHHHcCCHHHhhCChhhcCHHHH
Confidence             23567899999999999999987665432 100      0011111 23333   222222221 45778889999999


Q ss_pred             hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765        181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC  253 (606)
Q Consensus       181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~  253 (606)
                      ||+.||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|++|++
T Consensus       143 qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         143 QRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERGKL  214 (214)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence            9999999999999999999999999999999999999999877999999999976 56678999999999874

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.9e-40  Score=339.10  Aligned_cols=216  Identities=29%  Similarity=0.457  Sum_probs=171.2

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-----h
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-----I  103 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~-----~  103 (606)
                      |+++||+++|+        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++..     .
T Consensus         2 l~~~~l~~~~~--------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~   72 (271)
T PRK13638          2 LATSDLWFRYQ--------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP-QKGAVLWQGKPLDYSKRGL   72 (271)
T ss_pred             eEEEEEEEEcC--------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CccEEEECCEEcccccCCH
Confidence            78999999872        35699999999999999999999999999999999999876 5999999998752     1


Q ss_pred             hhhcccEEEEccCCCC-CCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhh
Q psy13765        104 NAFRRVSCYIQQDDRL-QPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKK  181 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l-~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~k  181 (606)
                      ...++.++||+|++.. ....|+.+.+... +..      .+.+..+ ++++.-+.+.+.-.  -..|.+...+||||||
T Consensus        73 ~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~-~~~------~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~q  143 (271)
T PRK13638         73 LALRQQVATVFQDPEQQIFYTDIDSDIAFS-LRN------LGVPEAEITRRVDEALTLVDAQ--HFRHQPIQCLSHGQKK  143 (271)
T ss_pred             HHHHhheEEEeeChhhccccccHHHHHHHH-HHH------cCCCHHHHHHHHHHHHHHcCCH--hHhcCCchhCCHHHHH
Confidence            2456789999999753 3344665544321 110      0111111 23333233332211  1457888999999999


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ  261 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~  261 (606)
                      |+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++. .+.++||++++|++|++++.|++++
T Consensus       144 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~  222 (271)
T PRK13638        144 RVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQGQILTHGAPGE  222 (271)
T ss_pred             HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence            999999999999999999999999999999999999999877999999999986 5678999999999999999999887


Q ss_pred             HH
Q psy13765        262 LV  263 (606)
Q Consensus       262 ~~  263 (606)
                      +.
T Consensus       223 ~~  224 (271)
T PRK13638        223 VF  224 (271)
T ss_pred             Hh
Confidence            64

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.3e-40  Score=336.59  Aligned_cols=222  Identities=22%  Similarity=0.378  Sum_probs=178.1

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~  104 (606)
                      .++++|++++|+        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++..   ..
T Consensus         2 ~l~~~~l~~~~~--------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~   72 (255)
T PRK11231          2 TLRTENLTVGYG--------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP-QSGTVFLGDKPISMLSSR   72 (255)
T ss_pred             EEEEEeEEEEEC--------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-CCcEEEECCEEhHHCCHH
Confidence            588999999872        35799999999999999999999999999999999999776 5999999997642   23


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS  184 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~  184 (606)
                      .+++.++|++|++.+++.+|+.+.+... .....+ ..+......++++.-+.+.+.-.  -..|.+...+|+|||||+.
T Consensus        73 ~~~~~i~~~~q~~~~~~~~tv~~~i~~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~  148 (255)
T PRK11231         73 QLARRLALLPQHHLTPEGITVRELVAYG-RSPWLS-LWGRLSAEDNARVNQAMEQTRIN--HLADRRLTDLSGGQRQRAF  148 (255)
T ss_pred             HHhhheEEecccCCCCCCccHHHHHHhc-cchhhh-hccCCCHHHHHHHHHHHHHcCCH--HHHcCCcccCCHHHHHHHH
Confidence            4567799999999988888987766531 111000 00111222234443333332211  1468889999999999999


Q ss_pred             HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765        185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                      ||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|+++..|+++++.
T Consensus       149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~  226 (255)
T PRK11231        149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLANGHVMAQGTPEEVM  226 (255)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence            999999999999999999999999999999999999877999999999987 577899999999999999999987753

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=100.00  E-value=1.6e-40  Score=329.34  Aligned_cols=206  Identities=27%  Similarity=0.432  Sum_probs=166.1

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-----h
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-----I  103 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~-----~  103 (606)
                      ++++|++++|+        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++..     .
T Consensus         1 l~~~~l~~~~~--------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~   71 (213)
T cd03262           1 IEIKNLHKSFG--------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP-DSGTIIIDGLKLTDDKKNI   71 (213)
T ss_pred             CEEEEEEEEEC--------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCccchhH
Confidence            46899999873        35699999999999999999999999999999999999876 5999999998652     2


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCCh-HHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhh
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSG-GQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKK  181 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSg-GqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~k  181 (606)
                      ..+++.++|++|++.+++.+|+.+.+..... ..     .+.+. ..++++   .+++..-.+- .++.+...+|+||||
T Consensus        72 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~-~~-----~~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~LS~G~~q  142 (213)
T cd03262          72 NELRQKVGMVFQQFNLFPHLTVLENITLAPI-KV-----KGMSKAEAEERA---LELLEKVGLADKADAYPAQLSGGQQQ  142 (213)
T ss_pred             HHHHhcceEEecccccCCCCcHHHHHHhHHH-Hh-----cCCCHHHHHHHH---HHHHHHcCCHhHhhhCccccCHHHHH
Confidence            3456789999999999998998776543211 00     01111 122233   2222222221 467888999999999


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC  253 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~  253 (606)
                      |+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+.++||++++|++|++
T Consensus       143 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         143 RVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDGRI  213 (213)
T ss_pred             HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence            999999999999999999999999999999999999999888999999999986 57789999999999974

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=3.7e-40  Score=336.93  Aligned_cols=218  Identities=22%  Similarity=0.383  Sum_probs=175.3

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~  104 (606)
                      .|+++||+++|+        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..   ..
T Consensus         2 ~l~~~~l~~~~~--------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p-~~G~i~~~g~~~~~~~~~   72 (258)
T PRK13548          2 MLEARNLSVRLG--------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP-DSGEVRLNGRPLADWSPA   72 (258)
T ss_pred             eEEEEeEEEEeC--------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCEEEECCEEcccCCHH
Confidence            478999999873        35699999999999999999999999999999999999876 5999999997643   23


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS  184 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~  184 (606)
                      ..++.++|++|++.+++.+|+.+.+.......  ..    -....++++.-+.+.+.-.  -..|.....||+|||||+.
T Consensus        73 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~----~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGe~qrv~  144 (258)
T PRK13548         73 ELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH--GL----SRAEDDALVAAALAQVDLA--HLAGRDYPQLSGGEQQRVQ  144 (258)
T ss_pred             HhhhheEEEccCCcCCCCCCHHHHHHhhhccc--CC----CcHHHHHHHHHHHHHcCCH--hHhcCCcccCCHHHHHHHH
Confidence            45577999999999888889877665421110  00    0011233333233332211  1467888999999999999


Q ss_pred             HHHhhh------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        185 IALELI------NNPRVMFLDEPTTGLDSQSCSQCIKLLKMIS-QQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       185 IA~aL~------~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      ||+||+      .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||++. .+.++||++++|++|++++.|
T Consensus       145 la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~  223 (258)
T PRK13548        145 LARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVADG  223 (258)
T ss_pred             HHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEECCEEEeeC
Confidence            999999      5999999999999999999999999999998 57999999999976 577899999999999999999


Q ss_pred             ChhHHH
Q psy13765        258 ATDQLV  263 (606)
Q Consensus       258 ~~~~~~  263 (606)
                      +++++.
T Consensus       224 ~~~~~~  229 (258)
T PRK13548        224 TPAEVL  229 (258)
T ss_pred             CHHHHh
Confidence            987764

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.8e-40  Score=336.45  Aligned_cols=217  Identities=23%  Similarity=0.337  Sum_probs=174.7

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-----
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-----  103 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-----  103 (606)
                      |+++||+++|+        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...     
T Consensus         1 i~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~~~~   71 (252)
T TIGR03005         1 VRFSDVTKRFG--------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI-DEGQIQVEGEQLYHMPGRN   71 (252)
T ss_pred             CEEEEEEEEeC--------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEcccccccc
Confidence            47899999873        35699999999999999999999999999999999999876 59999999976421     


Q ss_pred             -----------hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCC
Q psy13765        104 -----------NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEP  171 (606)
Q Consensus       104 -----------~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~  171 (606)
                                 ..+++.++|++|++.+++..|+.+.+.......   .   +...-+.  -.-+.+++..-.+- ..|.+
T Consensus        72 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~---~---~~~~~~~--~~~~~~~l~~~gl~~~~~~~  143 (252)
T TIGR03005        72 GPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV---L---GMARAEA--EKRAMELLDMVGLADKADHM  143 (252)
T ss_pred             ccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh---c---CCCHHHH--HHHHHHHHHHcCChhHhhcC
Confidence                       234678999999999999899876654311100   0   1111111  11223333332332 56788


Q ss_pred             CCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecC
Q psy13765        172 TTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSG  250 (606)
Q Consensus       172 ~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~  250 (606)
                      ...+|+|||||+.||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++. .+.+++|++++|++
T Consensus       144 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~  222 (252)
T TIGR03005       144 PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDK  222 (252)
T ss_pred             hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence            8899999999999999999999999999999999999999999999999875 899999999987 57789999999999


Q ss_pred             CcEEEEcChhHHH
Q psy13765        251 GQCLYQGATDQLV  263 (606)
Q Consensus       251 G~~~~~G~~~~~~  263 (606)
                      |++++.|+++++.
T Consensus       223 G~i~~~g~~~~~~  235 (252)
T TIGR03005       223 GRIVEQGKPDEIF  235 (252)
T ss_pred             CEEEEeCCHHHHh
Confidence            9999999988764

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.2e-40  Score=337.07  Aligned_cols=223  Identities=23%  Similarity=0.417  Sum_probs=178.6

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~  103 (606)
                      ..|+++|+++.++        ++.+|+|+||++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+.   +.
T Consensus        10 ~~l~i~~l~~~~~--------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~   80 (265)
T PRK10575         10 TTFALRNVSFRVP--------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP-SEGEILLDAQPLESWSS   80 (265)
T ss_pred             ceEEEeeEEEEEC--------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CCCEEEECCEehhhCCH
Confidence            4699999999873        35799999999999999999999999999999999999876 599999999764   23


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL  183 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl  183 (606)
                      ..+++.++|++|++.+++.+|+.+.+.. +..... ...+....-.++++.-+.+.+.-.  -.+|.+...+|||||||+
T Consensus        81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~-~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv  156 (265)
T PRK10575         81 KAFARKVAYLPQQLPAAEGMTVRELVAI-GRYPWH-GALGRFGAADREKVEEAISLVGLK--PLAHRLVDSLSGGERQRA  156 (265)
T ss_pred             HHHhhheEEeccCCCCCCCccHHHHHHh-Cccccc-ccccCCCHHHHHHHHHHHHHcCCH--HHhcCCcccCCHHHHHHH
Confidence            4556789999999888888999776653 211100 000011111234444333333221  146788899999999999


Q ss_pred             HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765        184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL  262 (606)
Q Consensus       184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~  262 (606)
                      .||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. .+.+.||++++|++|+++..|+++++
T Consensus       157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~G~i~~~~~~~~~  235 (265)
T PRK10575        157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRGGEMIAQGTPAEL  235 (265)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHh
Confidence            9999999999999999999999999999999999999875 899999999987 57789999999999999999998775


Q ss_pred             H
Q psy13765        263 V  263 (606)
Q Consensus       263 ~  263 (606)
                      .
T Consensus       236 ~  236 (265)
T PRK10575        236 M  236 (265)
T ss_pred             c
Confidence            3

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=2.1e-40  Score=352.51  Aligned_cols=207  Identities=22%  Similarity=0.305  Sum_probs=168.7

Q ss_pred             cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhhh----cccEEEEccCCCC
Q psy13765         47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INAF----RRVSCYIQQDDRL  119 (606)
Q Consensus        47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~~----~~~~~yv~Q~~~l  119 (606)
                      +.+.+|+|+||+|++||+++|+|||||||||||++|+|+.++ .+|+|.++|++..   ...+    ++.++||+|++.+
T Consensus         4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p-~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l   82 (363)
T TIGR01186         4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP-TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL   82 (363)
T ss_pred             CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC-CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence            456799999999999999999999999999999999999887 5999999998753   2333    6789999999999


Q ss_pred             CCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEE
Q psy13765        120 QPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSIALELINNPRVMFL  198 (606)
Q Consensus       120 ~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~IA~aL~~~P~lllL  198 (606)
                      +|.+||.+.+.. ++..      .+.+.-+  +-..+.+++...++- ..+++...|||||||||.|||||+.+|++|+|
T Consensus        83 ~~~~TV~eNi~~-~~~~------~~~~~~~--~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLl  153 (363)
T TIGR01186        83 FPHMTILQNTSL-GPEL------LGWPEQE--RKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLM  153 (363)
T ss_pred             CCCCCHHHHHHH-HHHH------cCCCHHH--HHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            999999665532 1110      1122222  222233333333332 56788888999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        199 DEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       199 DEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      ||||+|||+.++..+.+.+++++++ |+|||++|||+. ++.++||++++|++|+++..|+++++..
T Consensus       154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~~  219 (363)
T TIGR01186       154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEILR  219 (363)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence            9999999999999999999999765 899999999987 4779999999999999999999998754

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=4.7e-40  Score=324.16  Aligned_cols=195  Identities=26%  Similarity=0.489  Sum_probs=157.6

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCccEEEECCccCCh--
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN--GVTGQILTNGHSRNI--  103 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~--~~~G~I~~~G~~~~~--  103 (606)
                      .+.|+||+|+|+.+    ++++.+|+|+|+++++||+++|+||||||||||+++|+|+.++  ..+|+|.++|.+...  
T Consensus         3 ~~~~~~~~~~~~~~----~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~   78 (202)
T cd03233           3 TLSWRNISFTTGKG----RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA   78 (202)
T ss_pred             eEEEEccEEEeccC----CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch
Confidence            57899999999753    2456899999999999999999999999999999999999872  369999999986532  


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL  183 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl  183 (606)
                      ...++.++|++|++.+++.+|+.+.+.... ....++.+..||||||||++||                           
T Consensus        79 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~-~~~~~~~~~~LS~Ge~qrl~la---------------------------  130 (202)
T cd03233          79 EKYPGEIIYVSEEDVHFPTLTVRETLDFAL-RCKGNEFVRGISGGERKRVSIA---------------------------  130 (202)
T ss_pred             hhhcceEEEEecccccCCCCcHHHHHhhhh-hhccccchhhCCHHHHHHHHHH---------------------------
Confidence            345678999999999999999977665321 1013445555666666666655                           


Q ss_pred             HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                         +||+.+|++++|||||+|||+.++..+.+.|++++++ +.|+|+++|+...++.+.||++++|++|++++.|
T Consensus       131 ---ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g  202 (202)
T cd03233         131 ---EALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG  202 (202)
T ss_pred             ---HHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence               4555559999999999999999999999999999875 6787777776555678899999999999998765

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.1e-40  Score=341.67  Aligned_cols=220  Identities=22%  Similarity=0.382  Sum_probs=176.2

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-----
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-----  102 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~-----  102 (606)
                      .|+++||++.|..+.   ...+.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++..     
T Consensus         2 ~i~~~~l~~~~~~~~---~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~   77 (287)
T PRK13641          2 SIKFENVDYIYSPGT---PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP-SSGTITIAGYHITPETGN   77 (287)
T ss_pred             EEEEEEEEEEcCCCC---CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEECcccccc
Confidence            588999999974210   0125699999999999999999999999999999999999877 5999999998652     


Q ss_pred             --hhhhcccEEEEccCC--CCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc--ccCCCCCCC
Q psy13765        103 --INAFRRVSCYIQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM--FLDEPTTSN  175 (606)
Q Consensus       103 --~~~~~~~~~yv~Q~~--~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~--~~de~~~~~  175 (606)
                        ....++.++|++|++  .++ .+|+.+.+.. +...      ......+ ++|+   .+++..-.+-  ..+.+...|
T Consensus        78 ~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~-~~~~------~~~~~~~~~~~~---~~~l~~~gL~~~~~~~~~~~L  146 (287)
T PRK13641         78 KNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEF-GPKN------FGFSEDEAKEKA---LKWLKKVGLSEDLISKSPFEL  146 (287)
T ss_pred             chHHHHHhceEEEEeChhhhhc-cchHHHHHHH-HHHH------cCCCHHHHHHHH---HHHHHHcCCChhHhhCCcccC
Confidence              134567899999997  344 4688766642 1110      0112222 3333   3444444442  568899999


Q ss_pred             CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765        176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY  255 (606)
Q Consensus       176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~  255 (606)
                      |+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++ .+.++||++++|++|++++
T Consensus       147 SgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~G~i~~  225 (287)
T PRK13641        147 SGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEHGKLIK  225 (287)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999999999999999999999878999999999976 5778999999999999999


Q ss_pred             EcChhHHH
Q psy13765        256 QGATDQLV  263 (606)
Q Consensus       256 ~G~~~~~~  263 (606)
                      .|+++++.
T Consensus       226 ~g~~~~~~  233 (287)
T PRK13641        226 HASPKEIF  233 (287)
T ss_pred             eCCHHHHh
Confidence            99988764

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=100.00  E-value=3.1e-40  Score=330.59  Aligned_cols=216  Identities=24%  Similarity=0.371  Sum_probs=169.3

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-----
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-----  103 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-----  103 (606)
                      |+++||+++|+..    .....+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...     
T Consensus         2 l~~~~v~~~~~~~----~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~   76 (228)
T cd03257           2 LEVKNLSVSFPTG----GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP-TSGSIIFDGKDLLKLSRRL   76 (228)
T ss_pred             eEEEeeeEeccCC----CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEccccchhh
Confidence            6789999987321    0113699999999999999999999999999999999999876 59999999986532     


Q ss_pred             -hhhcccEEEEccCC--CCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc--cccCCCCCCCCch
Q psy13765        104 -NAFRRVSCYIQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV--MFLDEPTTSNPND  178 (606)
Q Consensus       104 -~~~~~~~~yv~Q~~--~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~--~~~de~~~~~s~g  178 (606)
                       ..+++.++|++|++  .+++.+|+.+.+.. ++.....    ....-+.+++  +.+++..-.+  -.++.+...+|+|
T Consensus        77 ~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~-~~~~~~~----~~~~~~~~~~--~~~~l~~~~l~~~~~~~~~~~LS~G  149 (228)
T cd03257          77 RKIRRKEIQMVFQDPMSSLNPRMTIGEQIAE-PLRIHGK----LSKKEARKEA--VLLLLVGVGLPEEVLNRYPHELSGG  149 (228)
T ss_pred             HHHhhccEEEEecCchhhcCCcCCHHHHHHH-HHHhccC----CcHHHHHHHH--HHHHHHHCCCChhHhhCCchhcCHH
Confidence             24567899999998  56778898776543 1111000    0011111221  1233333334  2568899999999


Q ss_pred             hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      ||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+.+.||++++|++|+++..|
T Consensus       150 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g  228 (228)
T cd03257         150 QRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYAGKIVEEG  228 (228)
T ss_pred             HHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeCCEEEecC
Confidence            999999999999999999999999999999999999999999876 899999999986 566799999999999998654

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=100.00  E-value=3e-40  Score=331.50  Aligned_cols=213  Identities=22%  Similarity=0.375  Sum_probs=172.4

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---h-
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---N-  104 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~-  104 (606)
                      |+++||++.++        ++++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...   . 
T Consensus         1 l~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~   71 (230)
T TIGR03410         1 LEVSNLNVYYG--------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV-KSGSIRLDGEDITKLPPHE   71 (230)
T ss_pred             CEEEeEEEEeC--------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCEEEECCEECCCCCHHH
Confidence            46899999873        35799999999999999999999999999999999999876 59999999976431   1 


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc-cccCCCCCCCCchhhhHH
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-MFLDEPTTSNPNDQKKRL  183 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~krl  183 (606)
                      ..++.++|++|++.+++.+|+.+.+... .... +.     +  ++++..-+..+...  + -..|++...+|+|||||+
T Consensus        72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~-~~~~-~~-----~--~~~~~~~~l~~~~~--l~~~~~~~~~~LS~G~~qrv  140 (230)
T TIGR03410        72 RARAGIAYVPQGREIFPRLTVEENLLTG-LAAL-PR-----R--SRKIPDEIYELFPV--LKEMLGRRGGDLSGGQQQQL  140 (230)
T ss_pred             HHHhCeEEeccCCcccCCCcHHHHHHHH-HHhc-Cc-----c--hHHHHHHHHHHHHh--HHHHhhCChhhCCHHHHHHH
Confidence            2356799999999999999997766432 1110 00     1  11221111222110  0 146889999999999999


Q ss_pred             HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765        184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL  262 (606)
Q Consensus       184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~  262 (606)
                      .||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|+++..|+++++
T Consensus       141 ~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~~~~~  219 (230)
T TIGR03410       141 AIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMERGRVVASGAGDEL  219 (230)
T ss_pred             HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHc
Confidence            9999999999999999999999999999999999999875 899999999976 57778999999999999999998876

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5e-40  Score=332.55  Aligned_cols=213  Identities=25%  Similarity=0.379  Sum_probs=173.1

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---h
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---I  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~  103 (606)
                      +.++++|++++++        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..   .
T Consensus         2 ~~l~~~~l~~~~~--------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~   72 (241)
T PRK14250          2 NEIEFKEVSYSSF--------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP-TEGSILIDGVDIKTIDV   72 (241)
T ss_pred             ceEEEEeEEEEeC--------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEEhhhcCh
Confidence            3589999999872        35699999999999999999999999999999999999876 5999999997643   2


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc--cccCCCCCCCCchhhh
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV--MFLDEPTTSNPNDQKK  181 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~--~~~de~~~~~s~g~~k  181 (606)
                      ...++.++|++|++.+++ .|+.+.+.....   ..       +-+++++   .+++..-.+  -..+.+...+|+||||
T Consensus        73 ~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~---~~-------~~~~~~~---~~~l~~~~l~~~~~~~~~~~LS~G~~q  138 (241)
T PRK14250         73 IDLRRKIGMVFQQPHLFE-GTVKDNIEYGPM---LK-------GEKNVDV---EYYLSIVGLNKEYATRDVKNLSGGEAQ  138 (241)
T ss_pred             HHhhhcEEEEecCchhch-hhHHHHHhcchh---hc-------CcHHHHH---HHHHHHcCCCHHHhhCCcccCCHHHHH
Confidence            345678999999998887 577665432110   00       0112232   222322233  1457788899999999


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD  260 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~  260 (606)
                      |+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.++||++++|++|+++..|+++
T Consensus       139 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~  217 (241)
T PRK14250        139 RVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNKGILVEYAKTY  217 (241)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeCCEEEEeCCHH
Confidence            999999999999999999999999999999999999999874 999999999987 577899999999999999999988


Q ss_pred             HHH
Q psy13765        261 QLV  263 (606)
Q Consensus       261 ~~~  263 (606)
                      ++.
T Consensus       218 ~~~  220 (241)
T PRK14250        218 DFF  220 (241)
T ss_pred             HHh
Confidence            764

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=100.00  E-value=5.5e-40  Score=328.98  Aligned_cols=220  Identities=32%  Similarity=0.552  Sum_probs=173.6

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCccEEEECCccCChh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS---NGVTGQILTNGHSRNIN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~---~~~~G~I~~~G~~~~~~  104 (606)
                      .+.++|++++++..    +..+++++|+|+++++||+++|+||||||||||+|+|+|+.+   + .+|+|.++|++....
T Consensus         3 ~~~~~~~~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~-~~G~i~~~g~~~~~~   77 (226)
T cd03234           3 VLPWWDVGLKAKNW----NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGT-TSGQILFNGQPRKPD   77 (226)
T ss_pred             cceeecceeeeecC----ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCC-CceEEEECCEECChH
Confidence            36799999998531    114689999999999999999999999999999999999987   4 599999999876555


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc-cccCCCCCCCCchhhhHH
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-MFLDEPTTSNPNDQKKRL  183 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~krl  183 (606)
                      ..++.++|++|++.+++.+|+.+.+...........   ...--.++++.-  .++..-.+ .+.++....+|+|||||+
T Consensus        78 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~---~~~~~~~~~~~~--~~l~~~~l~~~~~~~~~~LS~G~~qrl  152 (226)
T cd03234          78 QFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRK---SSDAIRKKRVED--VLLRDLALTRIGGNLVKGISGGERRRV  152 (226)
T ss_pred             HhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccc---cchHHHHHHHHH--HHHHhhcchhhhcccccCcCHHHHHHH
Confidence            667889999999999999999776653211000000   000011112211  02222122 245778889999999999


Q ss_pred             HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      .||+||+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|++..++.+.||++++|++|++++.|
T Consensus       153 ~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g  226 (226)
T cd03234         153 SIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG  226 (226)
T ss_pred             HHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence            99999999999999999999999999999999999998779999999999854678999999999999998765

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=3.9e-40  Score=320.56  Aligned_cols=218  Identities=22%  Similarity=0.400  Sum_probs=179.6

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----  103 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----  103 (606)
                      .++++||+..|        ++.++|+|||+++++||+++|+||||||||||||+|+|+.++ .+|+|.++|+++..    
T Consensus         3 mL~v~~l~~~Y--------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~-~~G~I~~~G~dit~~p~~   73 (237)
T COG0410           3 MLEVENLSAGY--------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP-RSGRIIFDGEDITGLPPH   73 (237)
T ss_pred             ceeEEeEeecc--------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeeEEECCeecCCCCHH
Confidence            58899999886        567899999999999999999999999999999999999876 48999999987642    


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhH
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKR  182 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~kr  182 (606)
                      +..|+.++||||...+||.+||+|.+.. |.....++      .++++.  +....-.-|.+- -.+.+.+.|||||||.
T Consensus        74 ~r~r~Gi~~VPegR~iF~~LTVeENL~~-g~~~~~~~------~~~~~~--~e~v~~lFP~Lker~~~~aG~LSGGEQQM  144 (237)
T COG0410          74 ERARLGIAYVPEGRRIFPRLTVEENLLL-GAYARRDK------EAQERD--LEEVYELFPRLKERRNQRAGTLSGGEQQM  144 (237)
T ss_pred             HHHhCCeEeCcccccchhhCcHHHHHhh-hhhccccc------cccccc--HHHHHHHChhHHHHhcCcccCCChHHHHH
Confidence            4457789999999999999999887764 22111110      011111  223333334443 5677888888888888


Q ss_pred             HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765        183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ  261 (606)
Q Consensus       183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~  261 (606)
                      |+|||||+.+|++|+|||||.||-|.-..+|.+.+++++++ |.||+++.++.. ...+++||.++|.+|++++.|+.++
T Consensus       145 LAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~Griv~~G~~~e  223 (237)
T COG0410         145 LAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLENGRIVLSGTAAE  223 (237)
T ss_pred             HHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeCCEEEEecCHHH
Confidence            88999999999999999999999999999999999999976 889999999876 4679999999999999999999998


Q ss_pred             HHH
Q psy13765        262 LVN  264 (606)
Q Consensus       262 ~~~  264 (606)
                      +.+
T Consensus       224 L~~  226 (237)
T COG0410         224 LLA  226 (237)
T ss_pred             Hhc
Confidence            754

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.3e-40  Score=338.16  Aligned_cols=221  Identities=22%  Similarity=0.351  Sum_probs=174.0

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC----
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN----  102 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~----  102 (606)
                      +.|+++||+++|+.+.   ...+++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++..    
T Consensus         1 ~~l~~~~l~~~~~~~~---~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p-~~G~i~~~g~~i~~~~~   76 (280)
T PRK13649          1 MGINLQNVSYTYQAGT---PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP-TQGSVRVDDTLITSTSK   76 (280)
T ss_pred             CeEEEEEEEEEcCCCC---ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEcccccc
Confidence            3588999999974210   0124699999999999999999999999999999999999876 5999999998643    


Q ss_pred             ---hhhhcccEEEEccCC--CCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc--cccCCCCCC
Q psy13765        103 ---INAFRRVSCYIQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV--MFLDEPTTS  174 (606)
Q Consensus       103 ---~~~~~~~~~yv~Q~~--~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~--~~~de~~~~  174 (606)
                         ...+++.++|++|++  .+++ .|+.+.+.. +...      .+.+.-+ ++++   .+++..-.+  ..+|.+...
T Consensus        77 ~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~-~~~~------~~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~~  145 (280)
T PRK13649         77 NKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAF-GPQN------FGVSQEEAEALA---REKLALVGISESLFEKNPFE  145 (280)
T ss_pred             ccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHH-HHHH------cCCCHHHHHHHH---HHHHHHcCCChhhhhCCccc
Confidence               134567899999997  4555 587665542 1100      0111111 2222   233332233  146888999


Q ss_pred             CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765        175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL  254 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~  254 (606)
                      +|+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.++||++++|++|+++
T Consensus       146 LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~  224 (280)
T PRK13649        146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKGKLV  224 (280)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEECCEEE
Confidence            9999999999999999999999999999999999999999999999877999999999986 577899999999999999


Q ss_pred             EEcChhHHH
Q psy13765        255 YQGATDQLV  263 (606)
Q Consensus       255 ~~G~~~~~~  263 (606)
                      ..|+++++.
T Consensus       225 ~~g~~~~~~  233 (280)
T PRK13649        225 LSGKPKDIF  233 (280)
T ss_pred             EeCCHHHHh
Confidence            999988764

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=100.00  E-value=4.5e-40  Score=328.87  Aligned_cols=209  Identities=27%  Similarity=0.432  Sum_probs=167.9

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcc
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR  108 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~  108 (606)
                      ++++|++++++        ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..... ++
T Consensus         1 l~l~~v~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~~~~~-~~   70 (223)
T TIGR03740         1 LETKNLSKRFG--------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP-TSGEIIFDGHPWTRKD-LH   70 (223)
T ss_pred             CEEEeEEEEEC--------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEeccccc-cc
Confidence            46899999863        35699999999999999999999999999999999999876 5999999998654322 35


Q ss_pred             cEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHHHH
Q psy13765        109 VSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSIAL  187 (606)
Q Consensus       109 ~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~IA~  187 (606)
                      .++|++|++.+++.+|+.+.+.... . ..+     ..   .+++.   +++..-.+- ..|.+...+|+|||||+.||+
T Consensus        71 ~~~~~~q~~~~~~~~t~~~~~~~~~-~-~~~-----~~---~~~~~---~~l~~~~l~~~~~~~~~~LS~G~~~rv~lar  137 (223)
T TIGR03740        71 KIGSLIESPPLYENLTARENLKVHT-T-LLG-----LP---DSRID---EVLNIVDLTNTGKKKAKQFSLGMKQRLGIAI  137 (223)
T ss_pred             cEEEEcCCCCccccCCHHHHHHHHH-H-HcC-----CC---HHHHH---HHHHHcCCcHHHhhhHhhCCHHHHHHHHHHH
Confidence            7999999999999889866554211 0 000     11   12222   222211121 356777888999999999999


Q ss_pred             hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765        188 ELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ  261 (606)
Q Consensus       188 aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~  261 (606)
                      |++.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.|++++
T Consensus       138 al~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~  210 (223)
T TIGR03740       138 ALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK  210 (223)
T ss_pred             HHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence            999999999999999999999999999999999878999999999987 4778999999999999999998753

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.9e-40  Score=336.65  Aligned_cols=222  Identities=23%  Similarity=0.346  Sum_probs=179.0

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---h
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---I  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~  103 (606)
                      ..|+++||+++|+        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++..   .
T Consensus         6 ~~l~i~~l~~~~~--------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~   76 (265)
T PRK10253          6 ARLRGEQLTLGYG--------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP-AHGHVWLDGEHIQHYAS   76 (265)
T ss_pred             cEEEEEEEEEEEC--------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-CCcEEEECCEEhhhCCH
Confidence            4789999999973        35699999999999999999999999999999999999876 5999999998643   2


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc-cccCCCCCCCCchhhhH
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-MFLDEPTTSNPNDQKKR  182 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~kr  182 (606)
                      ...++.++|++|++.+++..|+.+.+....... .+ .........++++.   +++..-++ -..|.+...+|+|||||
T Consensus        77 ~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~-~~-~~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~Gq~qr  151 (265)
T PRK10253         77 KEVARRIGLLAQNATTPGDITVQELVARGRYPH-QP-LFTRWRKEDEEAVT---KAMQATGITHLADQSVDTLSGGQRQR  151 (265)
T ss_pred             HHHhhheEEeeccCcCCCCCcHHHHHHhCcccc-cc-cccCCCHHHHHHHH---HHHHHcCCHHHhcCCcccCChHHHHH
Confidence            345667999999999998899977765421111 00 00001111223333   22222222 14688899999999999


Q ss_pred             HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765        183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ  261 (606)
Q Consensus       183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~  261 (606)
                      +.||+||+.+|++++|||||+|||+.++..+.+.|++++++ |.|||+++|++. .+.++||++++|++|++++.|++++
T Consensus       152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~  230 (265)
T PRK10253        152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALREGKIVAQGAPKE  230 (265)
T ss_pred             HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence            99999999999999999999999999999999999999874 899999999987 5789999999999999999999887


Q ss_pred             HH
Q psy13765        262 LV  263 (606)
Q Consensus       262 ~~  263 (606)
                      +.
T Consensus       231 ~~  232 (265)
T PRK10253        231 IV  232 (265)
T ss_pred             Hh
Confidence            64

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.2e-40  Score=334.29  Aligned_cols=223  Identities=18%  Similarity=0.308  Sum_probs=176.9

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---h
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---N  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~  104 (606)
                      .++++|+++.++        ++++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...   .
T Consensus         5 ~l~~~~l~~~~~--------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~   75 (255)
T PRK11300          5 LLSVSGLMMRFG--------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP-TGGTILLRGQHIEGLPGH   75 (255)
T ss_pred             eEEEeeEEEEEC--------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC-CcceEEECCEECCCCCHH
Confidence            589999999872        35799999999999999999999999999999999999876 59999999986532   2


Q ss_pred             h-hcccEEEEccCCCCCCCCcHHHHHHHcCCc--------cccCCc-cccCChHHHHHHHHHHHHhcCCcc-cccCCCCC
Q psy13765        105 A-FRRVSCYIQQDDRLQPLLTIENVMSLLGLD--------ESQNTR-SSQLSGGQKKRLSIALELINNPRV-MFLDEPTT  173 (606)
Q Consensus       105 ~-~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~--------~~~~~~-~~~lSgGqrqRv~ia~~L~~~~~~-~~~de~~~  173 (606)
                      . .+..++|++|++.+++.+|+.+.+......        ...+.. ........++++   .+++..-.+ -.+|.+..
T Consensus        76 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~gl~~~~~~~~~  152 (255)
T PRK11300         76 QIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRA---ATWLERVGLLEHANRQAG  152 (255)
T ss_pred             HHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHH---HHHHHhCChhhhhhCChh
Confidence            2 244589999999999999997766541100        000000 000001112233   233333233 25788999


Q ss_pred             CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765        174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQ  252 (606)
Q Consensus       174 ~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~  252 (606)
                      .+|+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+.++||++++|++|+
T Consensus       153 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~  231 (255)
T PRK11300        153 NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVNQGT  231 (255)
T ss_pred             hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEECCe
Confidence            99999999999999999999999999999999999999999999999875 899999999976 5778999999999999


Q ss_pred             EEEEcChhHHH
Q psy13765        253 CLYQGATDQLV  263 (606)
Q Consensus       253 ~~~~G~~~~~~  263 (606)
                      +++.|+++++.
T Consensus       232 i~~~~~~~~~~  242 (255)
T PRK11300        232 PLANGTPEEIR  242 (255)
T ss_pred             EEecCCHHHHh
Confidence            99999988763

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.4e-40  Score=338.57  Aligned_cols=215  Identities=20%  Similarity=0.363  Sum_probs=172.3

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC----hh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN----IN  104 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~----~~  104 (606)
                      ++++||+++|+       +.+.+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..    ..
T Consensus         2 l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~   73 (274)
T PRK13644          2 IRLENVSYSYP-------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP-QKGKVLVSGIDTGDFSKLQ   73 (274)
T ss_pred             EEEEEEEEEcC-------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEECCccccHH
Confidence            68999999873       234699999999999999999999999999999999999876 5999999998653    23


Q ss_pred             hhcccEEEEccCCC-CCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhh
Q psy13765        105 AFRRVSCYIQQDDR-LQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKK  181 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~-l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~k  181 (606)
                      ..++.++|++|++. .+...|+.+.+.. +...      ...+..+ ++++.   +++..-.+- ..|.+...+|+||||
T Consensus        74 ~~~~~i~~v~q~~~~~~~~~tv~enl~~-~~~~------~~~~~~~~~~~~~---~~l~~~gl~~~~~~~~~~LS~G~~q  143 (274)
T PRK13644         74 GIRKLVGIVFQNPETQFVGRTVEEDLAF-GPEN------LCLPPIEIRKRVD---RALAEIGLEKYRHRSPKTLSGGQGQ  143 (274)
T ss_pred             HHHhheEEEEEChhhhcccchHHHHHHh-hHHH------cCCCHHHHHHHHH---HHHHHCCCHHHhcCCcccCCHHHHH
Confidence            45678999999975 3555788665542 1110      1123222 22332   222222221 467888899999999


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ  261 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~  261 (606)
                      |+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++.. + ..||++++|++|++++.|++++
T Consensus       144 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~  221 (274)
T PRK13644        144 CVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE-L-HDADRIIVMDRGKIVLEGEPEN  221 (274)
T ss_pred             HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-hhCCEEEEEECCEEEEECCHHH
Confidence            9999999999999999999999999999999999999998789999999999874 5 5799999999999999999987


Q ss_pred             HH
Q psy13765        262 LV  263 (606)
Q Consensus       262 ~~  263 (606)
                      +.
T Consensus       222 ~~  223 (274)
T PRK13644        222 VL  223 (274)
T ss_pred             Hh
Confidence            64

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.2e-40  Score=345.74  Aligned_cols=223  Identities=19%  Similarity=0.286  Sum_probs=175.9

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC---CCccEEEECCccCC--
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN---GVTGQILTNGHSRN--  102 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~---~~~G~I~~~G~~~~--  102 (606)
                      .|+++||++.|+.+    .+...+|+||||+|++||+++|+||||||||||+++|+|+.++   ..+|+|.++|++..  
T Consensus         3 ~L~v~~l~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~   78 (326)
T PRK11022          3 LLNVDKLSVHFGDE----SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRI   78 (326)
T ss_pred             eEEEeCeEEEECCC----CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcC
Confidence            48999999998532    1225699999999999999999999999999999999999763   25899999998653  


Q ss_pred             -hhhh----cccEEEEccCC--CCCCCCcHHHHH-HHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc----cccCC
Q psy13765        103 -INAF----RRVSCYIQQDD--RLQPLLTIENVM-SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV----MFLDE  170 (606)
Q Consensus       103 -~~~~----~~~~~yv~Q~~--~l~~~ltv~~~l-~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~----~~~de  170 (606)
                       .+.+    ++.++||+|++  .+.|.+|+.+.+ +.+...       .+.+..+.+  ..+.+++..-.+    -.+|.
T Consensus        79 ~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~-------~~~~~~~~~--~~~~~~L~~~gL~~~~~~l~~  149 (326)
T PRK11022         79 SEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVH-------QGGNKKTRR--QRAIDLLNQVGIPDPASRLDV  149 (326)
T ss_pred             CHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHh-------cCCCHHHHH--HHHHHHHHHCCCCChHHHHhC
Confidence             2222    24699999998  478889986443 222110       012332221  222333333232    24677


Q ss_pred             CCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeec
Q psy13765        171 PTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLS  249 (606)
Q Consensus       171 ~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~  249 (606)
                      ....+||||||||.||+||+.+|++|++||||+|||+.++.+++++|+++++ .|.|+|++|||++ .+.+++|||++|.
T Consensus       150 ~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~  228 (326)
T PRK11022        150 YPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMY  228 (326)
T ss_pred             CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence            8889999999999999999999999999999999999999999999999987 4999999999987 4678999999999


Q ss_pred             CCcEEEEcChhHHHH
Q psy13765        250 GGQCLYQGATDQLVN  264 (606)
Q Consensus       250 ~G~~~~~G~~~~~~~  264 (606)
                      +|++++.|+++++.+
T Consensus       229 ~G~ive~g~~~~~~~  243 (326)
T PRK11022        229 AGQVVETGKAHDIFR  243 (326)
T ss_pred             CCEEEEECCHHHHhh
Confidence            999999999988753

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=100.00  E-value=3.6e-40  Score=326.66  Aligned_cols=207  Identities=23%  Similarity=0.425  Sum_probs=167.3

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh--hhh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--NAF  106 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--~~~  106 (606)
                      |+++|++++++        ++.+++|+|+++++| +++|+||||||||||+++|+|+.++ .+|+|.++|.+...  ..+
T Consensus         1 i~~~~~~~~~~--------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~   70 (211)
T cd03264           1 LQLENLTKRYG--------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP-SSGTIRIDGQDVLKQPQKL   70 (211)
T ss_pred             CEEEEEEEEEC--------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCCccccchHHH
Confidence            47899999872        346999999999999 9999999999999999999999876 59999999976432  345


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHH
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLS  184 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~  184 (606)
                      ++.++|++|++.+++.+|+.+.+......       .+.+..+ ++++.   +++...++- .+|.+...+|+|||||+.
T Consensus        71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~G~~qrv~  140 (211)
T cd03264          71 RRRIGYLPQEFGVYPNFTVREFLDYIAWL-------KGIPSKEVKARVD---EVLELVNLGDRAKKKIGSLSGGMRRRVG  140 (211)
T ss_pred             HhheEEecCCCcccccCCHHHHHHHHHHH-------hCCCHHHHHHHHH---HHHHHCCCHHHHhCchhhCCHHHHHHHH
Confidence            67899999999999999997665431100       0111122 23333   222222331 457888999999999999


Q ss_pred             HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      ||+||+.+|++++|||||+|||+.++..+.+.|+++++ +.|||+++|++. .+.+++|++++|++|++++.|
T Consensus       141 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g  211 (211)
T cd03264         141 IAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG  211 (211)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence            99999999999999999999999999999999999986 599999999986 466899999999999998765

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=100.00  E-value=8.3e-40  Score=345.20  Aligned_cols=226  Identities=23%  Similarity=0.328  Sum_probs=179.3

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC--CccEEEECCccCC--
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG--VTGQILTNGHSRN--  102 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~--~~G~I~~~G~~~~--  102 (606)
                      ..|+++||++.|..+    .+...+|+||||+|++||+++|+|+||||||||+++|+|+.++.  .+|+|.++|++..  
T Consensus        11 ~~L~i~~l~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~   86 (330)
T PRK09473         11 ALLDVKDLRVTFSTP----DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNL   86 (330)
T ss_pred             ceEEEeCeEEEEecC----CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcC
Confidence            369999999998532    13357999999999999999999999999999999999998763  4899999998653  


Q ss_pred             -hhh---hc-ccEEEEccCC--CCCCCCcHHHHHHH-cCCccccCCccccCChHH-HHHHHHHHHHhcCCcc-cccCCCC
Q psy13765        103 -INA---FR-RVSCYIQQDD--RLQPLLTIENVMSL-LGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV-MFLDEPT  172 (606)
Q Consensus       103 -~~~---~~-~~~~yv~Q~~--~l~~~ltv~~~l~~-~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~-~~~de~~  172 (606)
                       ..+   +| +.++||+|++  .+.|.+|+.+.+.. +...       ...+..+ ++|+.-..+.+.-++. -.++...
T Consensus        87 ~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~-------~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p  159 (330)
T PRK09473         87 PEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLH-------KGMSKAEAFEESVRMLDAVKMPEARKRMKMYP  159 (330)
T ss_pred             CHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHcCCCChHHHhcCCc
Confidence             222   23 4799999998  68899998664432 2111       0123222 2333323333333322 2356778


Q ss_pred             CCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCC
Q psy13765        173 TSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGG  251 (606)
Q Consensus       173 ~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G  251 (606)
                      ..||||||||+.||+||+.+|++|++||||+|||+.++.+++++|++++++ |.|+|++|||+. .+.+++|++++|++|
T Consensus       160 ~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~G  238 (330)
T PRK09473        160 HEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYAG  238 (330)
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEECC
Confidence            899999999999999999999999999999999999999999999999875 999999999987 567899999999999


Q ss_pred             cEEEEcChhHHHH
Q psy13765        252 QCLYQGATDQLVN  264 (606)
Q Consensus       252 ~~~~~G~~~~~~~  264 (606)
                      ++++.|+++++..
T Consensus       239 ~ive~g~~~~i~~  251 (330)
T PRK09473        239 RTMEYGNARDVFY  251 (330)
T ss_pred             EEEEECCHHHHHh
Confidence            9999999998854

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3e-40  Score=315.65  Aligned_cols=202  Identities=27%  Similarity=0.477  Sum_probs=162.8

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INA  105 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~  105 (606)
                      |+.+||+|++        .+|++|++||++++|||++||+||||||||||||.|+|...| .+|++.+||.+.+   ..+
T Consensus         2 i~a~nls~~~--------~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p-~~G~v~~~g~~l~~~~~~~   72 (259)
T COG4559           2 IRAENLSYSL--------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP-DSGEVTLNGVPLNSWPPEE   72 (259)
T ss_pred             eeeeeeEEEe--------ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC-CCCeEeeCCcChhhCCHHH
Confidence            7889999986        568899999999999999999999999999999999999877 4999999998653   456


Q ss_pred             hcccEEEEccCCCCCCCCcHHHHHHH------------------------cCCccccCCccccCChHHHHHHHHHHHHhc
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIENVMSL------------------------LGLDESQNTRSSQLSGGQKKRLSIALELIN  161 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~------------------------~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~  161 (606)
                      +.+.-+.+||+..+-.-.||.|+.+.                        .++.+...+....|||||||||.+||.|+.
T Consensus        73 lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQ  152 (259)
T COG4559          73 LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQ  152 (259)
T ss_pred             HHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHH
Confidence            67778999999988666777666543                        333333334444455555555555555544


Q ss_pred             CCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh
Q psy13765        162 NPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQM  241 (606)
Q Consensus       162 ~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~  241 (606)
                      -.      +|+                  .++++||||||||.||...+..++++.++++++|..|+++.||.+- ...+
T Consensus       153 l~------~~v------------------~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~Y  207 (259)
T COG4559         153 LW------PPV------------------PSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQY  207 (259)
T ss_pred             cc------CCC------------------CCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHh
Confidence            31      111                  2367999999999999999999999999999999999999999985 5689


Q ss_pred             cceeeeecCCcEEEEcChhHHHH
Q psy13765        242 FDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       242 ~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      ||||++|++||++..|+|+++..
T Consensus       208 aDrivll~~Grv~a~g~p~~vlt  230 (259)
T COG4559         208 ADRIVLLHQGRVIASGSPQDVLT  230 (259)
T ss_pred             hheeeeeeCCeEeecCCHHHhcC
Confidence            99999999999999999998763

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.2e-40  Score=337.73  Aligned_cols=218  Identities=29%  Similarity=0.450  Sum_probs=173.0

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~  104 (606)
                      .++++||+++|+       +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++..   ..
T Consensus         3 ~l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~   74 (277)
T PRK13652          3 LIETRDLCYSYS-------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP-TSGSVLIRGEPITKENIR   74 (277)
T ss_pred             eEEEEEEEEEeC-------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEECCcCCHH
Confidence            478999999873       224599999999999999999999999999999999999876 5999999998653   23


Q ss_pred             hhcccEEEEccCCC-CCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc-cccCCCCCCCCchhhh
Q psy13765        105 AFRRVSCYIQQDDR-LQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV-MFLDEPTTSNPNDQKK  181 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~-l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~k  181 (606)
                      ..++.++||+|++. .+...|+.+.+.. +...      .+....+ ++++.-+.+.+   ++ -.+|.....+|+||||
T Consensus        75 ~~~~~i~~v~q~~~~~~~~~tv~~~l~~-~~~~------~~~~~~~~~~~~~~~l~~~---~l~~~~~~~~~~LS~Gq~q  144 (277)
T PRK13652         75 EVRKFVGLVFQNPDDQIFSPTVEQDIAF-GPIN------LGLDEETVAHRVSSALHML---GLEELRDRVPHHLSGGEKK  144 (277)
T ss_pred             HHHhheEEEecCcccccccccHHHHHHh-HHHH------cCCCHHHHHHHHHHHHHHC---CChhHhcCCcccCCHHHHH
Confidence            55678999999974 2335688665542 1110      0122222 23333222222   22 1467778889999999


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD  260 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~  260 (606)
                      |+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.|||+++|++|++++.|+++
T Consensus       145 rl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~~  223 (277)
T PRK13652        145 RVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVE  223 (277)
T ss_pred             HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECCHH
Confidence            999999999999999999999999999999999999999875 899999999987 577899999999999999999998


Q ss_pred             HHHH
Q psy13765        261 QLVN  264 (606)
Q Consensus       261 ~~~~  264 (606)
                      ++.+
T Consensus       224 ~~~~  227 (277)
T PRK13652        224 EIFL  227 (277)
T ss_pred             HHhc
Confidence            8753

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.1e-40  Score=332.21  Aligned_cols=221  Identities=29%  Similarity=0.382  Sum_probs=176.3

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccCC-
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSRN-  102 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~~-  102 (606)
                      .++++||+++++        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++    +.+|+|.++|.+.. 
T Consensus         3 ~l~~~~l~~~~~--------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~   74 (250)
T PRK14247          3 KIEIRDLKVSFG--------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFK   74 (250)
T ss_pred             eEEEEeeEEEEC--------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCc
Confidence            588999999873        35699999999999999999999999999999999999763    25899999998653 


Q ss_pred             --hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCc-c-cccCCCCCCCCc
Q psy13765        103 --INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPR-V-MFLDEPTTSNPN  177 (606)
Q Consensus       103 --~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~-~-~~~de~~~~~s~  177 (606)
                        ...+++.++|++|++.+++.+|+.+.+... .. ... .  ..+..+ ++++.-+.+.+.-.+ + -.+|.+...+||
T Consensus        75 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~-~~-~~~-~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg  149 (250)
T PRK14247         75 MDVIELRRRVQMVFQIPNPIPNLSIFENVALG-LK-LNR-L--VKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSG  149 (250)
T ss_pred             CCHHHHhccEEEEeccCccCCCCcHHHHHHHH-HH-hcc-c--cCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCH
Confidence              245567899999999988899997766531 11 000 0  011122 233332222222111 1 146889999999


Q ss_pred             hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      |||||+.||+||+.+|++++|||||+|||+.++..+.+.|+++++ |+|+|+++|+++ .+.+.||++++|++|+++..|
T Consensus       150 G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g  227 (250)
T PRK14247        150 GQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYKGQIVEWG  227 (250)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEECCeEEEEC
Confidence            999999999999999999999999999999999999999999965 899999999987 467899999999999999999


Q ss_pred             ChhHHH
Q psy13765        258 ATDQLV  263 (606)
Q Consensus       258 ~~~~~~  263 (606)
                      +++++.
T Consensus       228 ~~~~~~  233 (250)
T PRK14247        228 PTREVF  233 (250)
T ss_pred             CHHHHH
Confidence            998774

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-39  Score=336.47  Aligned_cols=226  Identities=27%  Similarity=0.432  Sum_probs=177.6

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-----h
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-----I  103 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~-----~  103 (606)
                      |+++||++.|+       +.+.+++|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|++..     .
T Consensus         2 l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-~~G~i~~~g~~~~~~~~~~   73 (275)
T PRK13639          2 LETRDLKYSYP-------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP-TSGEVLIKGEPIKYDKKSL   73 (275)
T ss_pred             EEEEEEEEEeC-------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEECccccchH
Confidence            78999999873       234699999999999999999999999999999999999876 5999999998753     1


Q ss_pred             hhhcccEEEEccCCC-CCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhh
Q psy13765        104 NAFRRVSCYIQQDDR-LQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKK  181 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~-l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~k  181 (606)
                      ...++.++|++|++. .+...|+.+.+.. +...      ...+.-+.+  ..+.+++..-.+- ..|.+...+|+||||
T Consensus        74 ~~~~~~i~~v~q~~~~~~~~~tv~e~i~~-~~~~------~~~~~~~~~--~~~~~~l~~~~L~~~~~~~~~~LS~Gq~q  144 (275)
T PRK13639         74 LEVRKTVGIVFQNPDDQLFAPTVEEDVAF-GPLN------LGLSKEEVE--KRVKEALKAVGMEGFENKPPHHLSGGQKK  144 (275)
T ss_pred             HHHHhheEEEeeChhhhhccccHHHHHHH-HHHH------cCCCHHHHH--HHHHHHHHHCCCchhhcCChhhCCHHHHH
Confidence            235678999999973 2234588666542 2111      012222221  2233344333332 578889999999999


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ  261 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~  261 (606)
                      |+.||+||+.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++. .+.++||++++|++|++++.|++++
T Consensus       145 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~  223 (275)
T PRK13639        145 RVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSDGKIIKEGTPKE  223 (275)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence            999999999999999999999999999999999999999877999999999976 5678999999999999999999988


Q ss_pred             HHH---HHHhCCCC
Q psy13765        262 LVN---YLSSVNLP  272 (606)
Q Consensus       262 ~~~---~f~~~g~~  272 (606)
                      +.+   ..+..|.+
T Consensus       224 ~~~~~~~~~~~~~~  237 (275)
T PRK13639        224 VFSDIETIRKANLR  237 (275)
T ss_pred             HhcChHHHHhcCCC
Confidence            753   33444544

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=3.4e-40  Score=326.73  Aligned_cols=205  Identities=27%  Similarity=0.464  Sum_probs=161.3

Q ss_pred             EEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhhh
Q psy13765         30 KFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INAF  106 (606)
Q Consensus        30 ~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~~  106 (606)
                      +++|++++++.      ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++..   ...+
T Consensus         1 ~~~~l~~~~~~------~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~   73 (211)
T cd03225           1 ELKNLSFSYPD------GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP-TSGEVLVDGKDLTKLSLKEL   73 (211)
T ss_pred             CceeEEEecCC------CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEEcccCCHHHH
Confidence            36789988631      125799999999999999999999999999999999999876 5999999997643   2345


Q ss_pred             cccEEEEccCCC-CCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHH
Q psy13765        107 RRVSCYIQQDDR-LQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRL  183 (606)
Q Consensus       107 ~~~~~yv~Q~~~-l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl  183 (606)
                      ++.++|++|++. .++.+|+.+.+... ...      ...+..+ +++   +.+++..-.+- .++.+...+|||||||+
T Consensus        74 ~~~i~~~~q~~~~~~~~~t~~~~l~~~-~~~------~~~~~~~~~~~---~~~~l~~~~l~~~~~~~~~~LSgG~~qrv  143 (211)
T cd03225          74 RRKVGLVFQNPDDQFFGPTVEEEVAFG-LEN------LGLPEEEIEER---VEEALELVGLEGLRDRSPFTLSGGQKQRV  143 (211)
T ss_pred             HhhceEEecChhhhcCCCcHHHHHHHH-HHH------cCCCHHHHHHH---HHHHHHHcCcHhhhcCCcccCCHHHHHHH
Confidence            678999999975 35667886655431 100      0112111 222   23333332331 45788889999999999


Q ss_pred             HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765        184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ  252 (606)
Q Consensus       184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~  252 (606)
                      .||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|+
T Consensus       144 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~  211 (211)
T cd03225         144 AIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK  211 (211)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence            9999999999999999999999999999999999999877999999999976 5778899999999885

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.4e-40  Score=329.13  Aligned_cols=215  Identities=23%  Similarity=0.347  Sum_probs=169.9

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---h
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---N  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~  104 (606)
                      .++++||+++|+.+    ...+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...   .
T Consensus         5 ~l~~~~l~~~~~~~----~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~i~~~~~~   79 (233)
T PRK11629          5 LLQCDNLCKRYQEG----SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP-TSGDVIFNGQPMSKLSSA   79 (233)
T ss_pred             eEEEEeEEEEcCCC----CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEEcCcCCHH
Confidence            48999999997421    0125699999999999999999999999999999999999876 59999999986532   1


Q ss_pred             ---hh-cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCccc-ccCCCCCCCCch
Q psy13765        105 ---AF-RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM-FLDEPTTSNPND  178 (606)
Q Consensus       105 ---~~-~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~-~~de~~~~~s~g  178 (606)
                         .. ++.++|++|++.+++.+|+.+.+... ..      ..+.+.. .++|+.-+.+.+   .+- ..+++...+|||
T Consensus        80 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~-~~------~~~~~~~~~~~~~~~~l~~~---gl~~~~~~~~~~LSgG  149 (233)
T PRK11629         80 AKAELRNQKLGFIYQFHHLLPDFTALENVAMP-LL------IGKKKPAEINSRALEMLAAV---GLEHRANHRPSELSGG  149 (233)
T ss_pred             HHHHHHhccEEEEecCcccCCCCCHHHHHHHH-HH------hcCCCHHHHHHHHHHHHHHc---CCchhhhCChhhCCHH
Confidence               12 25799999999999999997766531 10      0012211 233433222222   221 457788899999


Q ss_pred             hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      ||||+.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++. +. .+|++++|++|+++..+
T Consensus       150 ~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~~-~~~~~~~l~~G~i~~~~  227 (233)
T PRK11629        150 ERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-AK-RMSRQLEMRDGRLTAEL  227 (233)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HH-hhCEEEEEECCEEEEEe
Confidence            99999999999999999999999999999999999999999976 58999999999874 54 46899999999999887


Q ss_pred             Ch
Q psy13765        258 AT  259 (606)
Q Consensus       258 ~~  259 (606)
                      +.
T Consensus       228 ~~  229 (233)
T PRK11629        228 SL  229 (233)
T ss_pred             cc
Confidence            63

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=100.00  E-value=7.7e-40  Score=330.96  Aligned_cols=224  Identities=24%  Similarity=0.285  Sum_probs=172.3

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCccEEEECCccCCh---h
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS-NGVTGQILTNGHSRNI---N  104 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~-~~~~G~I~~~G~~~~~---~  104 (606)
                      |+++||+++|+        ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ ++.+|+|.++|++...   .
T Consensus         1 l~~~~l~~~~~--------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~   72 (243)
T TIGR01978         1 LKIKDLHVSVE--------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPD   72 (243)
T ss_pred             CeEeeEEEEEC--------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHH
Confidence            46899999873        3569999999999999999999999999999999999852 2369999999986432   2


Q ss_pred             hh-cccEEEEccCCCCCCCCcHHHHHHHc-CCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCC-CCCchhh
Q psy13765        105 AF-RRVSCYIQQDDRLQPLLTIENVMSLL-GLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTT-SNPNDQK  180 (606)
Q Consensus       105 ~~-~~~~~yv~Q~~~l~~~ltv~~~l~~~-gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~-~~s~g~~  180 (606)
                      .. +..++|++|++.+++.+|+.+.+... ....... .....+..+ .+++.-+.+.+.-++ -+.|.+.. .+|+|||
T Consensus        73 ~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LS~G~~  150 (243)
T TIGR01978        73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSAR-GEEPLDLLDFLKLLKAKLALLGMDE-EFLNRSVNEGFSGGEK  150 (243)
T ss_pred             HhhccceEeeeccccccCCcCHHHHHHHHHHHhhccc-ccccccHHHHHHHHHHHHHHcCCch-hhcccccccCcCHHHH
Confidence            22 34589999999999999998776542 1100000 000112222 234432333222111 13566665 5999999


Q ss_pred             hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh-cceeeeecCCcEEEEcCh
Q psy13765        181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQM-FDQVYLLSGGQCLYQGAT  259 (606)
Q Consensus       181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~-~D~v~~L~~G~~~~~G~~  259 (606)
                      ||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+... ||++++|++|++++.|++
T Consensus       151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~G~i~~~g~~  229 (243)
T TIGR01978       151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLDGRIVKSGDV  229 (243)
T ss_pred             HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeCCEEEEecCH
Confidence            9999999999999999999999999999999999999999878999999999987 46666 899999999999999998


Q ss_pred             hHHH
Q psy13765        260 DQLV  263 (606)
Q Consensus       260 ~~~~  263 (606)
                      +++.
T Consensus       230 ~~~~  233 (243)
T TIGR01978       230 ELAK  233 (243)
T ss_pred             HHhc
Confidence            7543

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-39  Score=337.06  Aligned_cols=228  Identities=23%  Similarity=0.374  Sum_probs=178.1

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~  104 (606)
                      .++++||++.|+.      ..+.+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|++..   ..
T Consensus         5 ~l~~~~l~~~~~~------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p-~~G~i~~~g~~i~~~~~~   77 (279)
T PRK13635          5 IIRVEHISFRYPD------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP-EAGTITVGGMVLSEETVW   77 (279)
T ss_pred             eEEEEEEEEEeCC------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEECCEECCcCcHH
Confidence            4899999998731      235699999999999999999999999999999999999877 5999999998653   23


Q ss_pred             hhcccEEEEccCCC-CCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc-cccCCCCCCCCchhhh
Q psy13765        105 AFRRVSCYIQQDDR-LQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV-MFLDEPTTSNPNDQKK  181 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~-l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~k  181 (606)
                      ..++.++|++|++. .++..|+.+.+.. +...      .+...-+ ++++.-+.+.+   .+ -..+.+...+|+||||
T Consensus        78 ~~~~~i~~~~q~~~~~~~~~tv~enl~~-~~~~------~~~~~~~~~~~~~~~l~~~---gL~~~~~~~~~~LS~G~~q  147 (279)
T PRK13635         78 DVRRQVGMVFQNPDNQFVGATVQDDVAF-GLEN------IGVPREEMVERVDQALRQV---GMEDFLNREPHRLSGGQKQ  147 (279)
T ss_pred             HHhhheEEEEeCHHHhcccccHHHHHhh-hHhh------CCCCHHHHHHHHHHHHHHc---CChhhhhCCcccCCHHHHH
Confidence            45678999999973 6666788666543 1111      0112211 23333222222   22 1467788889999999


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD  260 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~  260 (606)
                      |+.||+||+.+|++|+|||||+|||+.++..+.++|++++++ |+|||+++|+++. +. .||++++|++|++++.|+++
T Consensus       148 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~~-~~d~i~~l~~G~i~~~g~~~  225 (279)
T PRK13635        148 RVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-AA-QADRVIVMNKGEILEEGTPE  225 (279)
T ss_pred             HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-HH-cCCEEEEEECCEEEEECCHH
Confidence            999999999999999999999999999999999999999876 8999999999874 54 59999999999999999988


Q ss_pred             HHHH---HHHhCCCCCC
Q psy13765        261 QLVN---YLSSVNLPCP  274 (606)
Q Consensus       261 ~~~~---~f~~~g~~~~  274 (606)
                      ++..   .+...+..+|
T Consensus       226 ~~~~~~~~~~~~~~~~~  242 (279)
T PRK13635        226 EIFKSGHMLQEIGLDVP  242 (279)
T ss_pred             HHhcCHHHHHHcCCCCC
Confidence            7653   3334454433

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-39  Score=333.29  Aligned_cols=219  Identities=24%  Similarity=0.320  Sum_probs=175.4

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccCC
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSRN  102 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~~  102 (606)
                      ..|+++|+++.|+        ++.+|+|+|++|++||+++|+||||||||||+++|+|+.++    ..+|+|.++|++..
T Consensus        11 ~~l~~~~l~~~~~--------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~   82 (258)
T PRK14268         11 PQIKVENLNLWYG--------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY   82 (258)
T ss_pred             eeEEEeeeEEEeC--------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcc
Confidence            3699999999862        35699999999999999999999999999999999999764    25899999997642


Q ss_pred             -----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCc-c-cccCCCCCC
Q psy13765        103 -----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPR-V-MFLDEPTTS  174 (606)
Q Consensus       103 -----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~-~-~~~de~~~~  174 (606)
                           ...+++.++|++|++.+++ .|+.+.+... ...      .+++..+ ++++.-+.+.+.-.+ + -.+|.+...
T Consensus        83 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~-~~~------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~  154 (258)
T PRK14268         83 EPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYG-PRI------HGANKKDLDGVVENALRSAALWDETSDRLKSPALS  154 (258)
T ss_pred             cccchHHHHhhhEEEEecCCccCc-ccHHHHHHHH-HHH------cCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhh
Confidence                 1245678999999998888 8887666431 110      0122222 233333333322111 1 146889999


Q ss_pred             CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765        175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL  254 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~  254 (606)
                      +|+||||||.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|++. .+.++||++++|++|+++
T Consensus       155 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~  232 (258)
T PRK14268        155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFLMGELI  232 (258)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEE
Confidence            999999999999999999999999999999999999999999999965 799999999976 467899999999999999


Q ss_pred             EEcChhHHH
Q psy13765        255 YQGATDQLV  263 (606)
Q Consensus       255 ~~G~~~~~~  263 (606)
                      +.|+++++.
T Consensus       233 ~~~~~~~~~  241 (258)
T PRK14268        233 EFGQTRQIF  241 (258)
T ss_pred             EeCCHHHHh
Confidence            999998764

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-39  Score=332.56  Aligned_cols=219  Identities=24%  Similarity=0.291  Sum_probs=173.6

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC----CccEEEECCccCC-
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG----VTGQILTNGHSRN-  102 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~----~~G~I~~~G~~~~-  102 (606)
                      .++++|++++++        ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++.    .+|+|.++|++.. 
T Consensus         7 ~l~~~~l~~~~~--------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~   78 (254)
T PRK14273          7 IIETENLNLFYT--------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYS   78 (254)
T ss_pred             eEEEeeeEEEeC--------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccc
Confidence            699999999873        356999999999999999999999999999999999997652    4899999998642 


Q ss_pred             ----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCC-cc-cccCCCCCCC
Q psy13765        103 ----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNP-RV-MFLDEPTTSN  175 (606)
Q Consensus       103 ----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~-~~-~~~de~~~~~  175 (606)
                          ....++.++|++|++.+++ .|+.+.+.. +.... +    ..... .++++.-+...+.-. .+ -.+|.+...+
T Consensus        79 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~-~~~~~-~----~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L  151 (254)
T PRK14273         79 NNFDILELRRKIGMVFQTPNPFL-MSIYDNISY-GPKIH-G----TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSL  151 (254)
T ss_pred             ccccHHHHhhceEEEeecccccc-CcHHHHHHH-HHHhc-C----CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccC
Confidence                2345678999999998875 788776543 11110 0    01111 123333222222110 00 1367888999


Q ss_pred             CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765        176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY  255 (606)
Q Consensus       176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~  255 (606)
                      |||||||+.|||||+.+|++|+|||||+|||+.++..+.++|+++++ +.|||+++|+++ .+.+++||+++|++|+++.
T Consensus       152 SgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~  229 (254)
T PRK14273        152 SGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGRISDRTAFFLNGCIEE  229 (254)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999999964 799999999987 4678999999999999999


Q ss_pred             EcChhHHH
Q psy13765        256 QGATDQLV  263 (606)
Q Consensus       256 ~G~~~~~~  263 (606)
                      .|+++++.
T Consensus       230 ~g~~~~~~  237 (254)
T PRK14273        230 ESSTDELF  237 (254)
T ss_pred             eCCHHHHH
Confidence            99998874

>PRK10908 cell division protein FtsE; Provisional

Probab=100.00  E-value=7.7e-40  Score=326.94  Aligned_cols=207  Identities=23%  Similarity=0.350  Sum_probs=165.7

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-----
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-----  103 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-----  103 (606)
                      |+++|++++++       +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...     
T Consensus         2 l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~~~~   73 (222)
T PRK10908          2 IRFEHVSKAYL-------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP-SAGKIWFSGHDITRLKNRE   73 (222)
T ss_pred             EEEEeeEEEec-------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEcccCChhH
Confidence            78999999873       235699999999999999999999999999999999999876 59999999976431     


Q ss_pred             -hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhh
Q psy13765        104 -NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQK  180 (606)
Q Consensus       104 -~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~  180 (606)
                       ..+++.++|++|++.+++..|+.+.+... ...      .+.+.-+ ++++.   +++..-.+- ..+.+...+|+|||
T Consensus        74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~-~~~------~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~G~~  143 (222)
T PRK10908         74 VPFLRRQIGMIFQDHHLLMDRTVYDNVAIP-LII------AGASGDDIRRRVS---AALDKVGLLDKAKNFPIQLSGGEQ  143 (222)
T ss_pred             HHHHHhheEEEecCccccccccHHHHHHhH-HHh------cCCCHHHHHHHHH---HHHHHcCChhhhhCCchhCCHHHH
Confidence             12467899999999988888986665431 100      0112111 22222   222222221 35778889999999


Q ss_pred             hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765        181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL  254 (606)
Q Consensus       181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~  254 (606)
                      ||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|+++ .+...||++++|++|+++
T Consensus       144 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~  216 (222)
T PRK10908        144 QRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSDGHLH  216 (222)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEc
Confidence            9999999999999999999999999999999999999999877899999999987 477889999999999975

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-39  Score=333.95  Aligned_cols=228  Identities=23%  Similarity=0.368  Sum_probs=176.3

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~  104 (606)
                      .|+++|++++|+.      ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..   ..
T Consensus         7 ~l~i~~l~~~~~~------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~-~~G~i~~~g~~~~~~~~~   79 (269)
T PRK13648          7 IIVFKNVSFQYQS------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV-KSGEIFYNNQAITDDNFE   79 (269)
T ss_pred             eEEEEEEEEEcCC------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEECCcCCHH
Confidence            5899999998732      224699999999999999999999999999999999999876 5999999998653   23


Q ss_pred             hhcccEEEEccCCC-CCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhh
Q psy13765        105 AFRRVSCYIQQDDR-LQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM-FLDEPTTSNPNDQKK  181 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~-l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~k  181 (606)
                      ..++.++|++|++. +++..|+.+.+.. ++...      ..+.- .++++   .+++..-++. ..|.....+|+||||
T Consensus        80 ~~~~~i~~v~q~~~~~~~~~~v~~~~~~-~~~~~------~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~LS~G~~q  149 (269)
T PRK13648         80 KLRKHIGIVFQNPDNQFVGSIVKYDVAF-GLENH------AVPYDEMHRRV---SEALKQVDMLERADYEPNALSGGQKQ  149 (269)
T ss_pred             HHHhheeEEEeChHHhcccccHHHHHHh-hHHhc------CCCHHHHHHHH---HHHHHHcCCchhhhCCcccCCHHHHH
Confidence            56778999999984 5666776444322 21110      01111 12232   2333332332 567788889999999


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD  260 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~  260 (606)
                      |+.||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++.. +. .+|++++|++|++++.|+++
T Consensus       150 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~-~~d~i~~l~~G~i~~~g~~~  227 (269)
T PRK13648        150 RVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AM-EADHVIVMNKGTVYKEGTPT  227 (269)
T ss_pred             HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hh-cCCEEEEEECCEEEEecCHH
Confidence            999999999999999999999999999999999999999865 8999999999874 54 49999999999999999998


Q ss_pred             HHHH---HHHhCCCCCC
Q psy13765        261 QLVN---YLSSVNLPCP  274 (606)
Q Consensus       261 ~~~~---~f~~~g~~~~  274 (606)
                      ++.+   .+...|.++|
T Consensus       228 ~~~~~~~~~~~~~~~~~  244 (269)
T PRK13648        228 EIFDHAEELTRIGLDLP  244 (269)
T ss_pred             HHhcCHHHHHhcCCCCC
Confidence            7643   3444454444

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-39  Score=332.18  Aligned_cols=220  Identities=26%  Similarity=0.335  Sum_probs=176.0

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC----CccEEEECCccCC-
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG----VTGQILTNGHSRN-  102 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~----~~G~I~~~G~~~~-  102 (606)
                      .|+++||+++|+        ++++|+|+|+++++||+++|+||||||||||+++|+|+.++.    .+|+|.++|++.. 
T Consensus         4 ~l~~~~l~~~~~--------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~   75 (253)
T PRK14267          4 AIETVNLRVYYG--------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYS   75 (253)
T ss_pred             eEEEEeEEEEeC--------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence            588999999873        356999999999999999999999999999999999997652    4899999998653 


Q ss_pred             ----hhhhcccEEEEccCCCCCCCCcHHHHHHHc-CCccccCCccccCCh-HHHHHHHHHHHHhcC-Ccc-cccCCCCCC
Q psy13765        103 ----INAFRRVSCYIQQDDRLQPLLTIENVMSLL-GLDESQNTRSSQLSG-GQKKRLSIALELINN-PRV-MFLDEPTTS  174 (606)
Q Consensus       103 ----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~-gl~~~~~~~~~~lSg-GqrqRv~ia~~L~~~-~~~-~~~de~~~~  174 (606)
                          ...+++.++|++|++.+++.+|+.+.+... .....     . .+. ..++++.-+.+.+.- +.+ -.+|.+...
T Consensus        76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-----~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~  149 (253)
T PRK14267         76 PDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-----V-KSKKELDERVEWALKKAALWDEVKDRLNDYPSN  149 (253)
T ss_pred             cccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-----c-CCHHHHHHHHHHHHHHcCCccchhhhhccChhh
Confidence                234567899999999999999987766431 11100     0 011 112233322222221 111 146888999


Q ss_pred             CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765        175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL  254 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~  254 (606)
                      +|+|||||+.||+||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||++++|++|+++
T Consensus       150 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~  227 (253)
T PRK14267        150 LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYLGKLI  227 (253)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEECCEEE
Confidence            999999999999999999999999999999999999999999999975 699999999986 577899999999999999


Q ss_pred             EEcChhHHH
Q psy13765        255 YQGATDQLV  263 (606)
Q Consensus       255 ~~G~~~~~~  263 (606)
                      +.|+++++.
T Consensus       228 ~~~~~~~~~  236 (253)
T PRK14267        228 EVGPTRKVF  236 (253)
T ss_pred             EeCCHHHHH
Confidence            999988764

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.1e-39  Score=332.87  Aligned_cols=219  Identities=20%  Similarity=0.379  Sum_probs=176.4

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INA  105 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~  105 (606)
                      |+++|++++++        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..   ...
T Consensus         2 l~~~~l~~~~~--------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~   72 (256)
T TIGR03873         2 LRLSRVSWSAG--------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP-DAGTVDLAGVDLHGLSRRA   72 (256)
T ss_pred             ceEEeEEEEEC--------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-CCCEEEECCEEcccCCHHH
Confidence            68899999873        35799999999999999999999999999999999999876 5999999997643   234


Q ss_pred             hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCC-hHHHHHHHHHHHHhcCCcc-cccCCCCCCCCchhhhHH
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLS-GGQKKRLSIALELINNPRV-MFLDEPTTSNPNDQKKRL  183 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lS-gGqrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~krl  183 (606)
                      .++.++|++|++.+++.+|+.+.+....... ..  ..... .-+.+++.   +++..-.+ -.+|.+...+|+|||||+
T Consensus        73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~G~~qrl  146 (256)
T TIGR03873        73 RARRVALVEQDSDTAVPLTVRDVVALGRIPH-RS--LWAGDSPHDAAVVD---RALARTELSHLADRDMSTLSGGERQRV  146 (256)
T ss_pred             HhhheEEecccCccCCCCCHHHHHHhcchhh-hh--hccCCCHHHHHHHH---HHHHHcCcHhhhcCCcccCCHHHHHHH
Confidence            5567999999998888889877665421110 00  00011 11233433   22222222 257889999999999999


Q ss_pred             HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765        184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                      .||+||+.+|++++|||||+|||+.+...+.+.|++++++|.|||+++|+++ .+.++||++++|++|+++..|+++++.
T Consensus       147 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~  225 (256)
T TIGR03873       147 HVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPPREVL  225 (256)
T ss_pred             HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence            9999999999999999999999999999999999999877999999999987 577899999999999999999987753

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-39  Score=333.14  Aligned_cols=210  Identities=22%  Similarity=0.323  Sum_probs=170.0

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcc
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR  108 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~  108 (606)
                      |+++|++++|+        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...  .++
T Consensus         2 l~~~~l~~~~~--------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~--~~~   70 (255)
T PRK11248          2 LQISHLYADYG--------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY-QHGSITLDGKPVEG--PGA   70 (255)
T ss_pred             EEEEEEEEEeC--------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCC--CCC
Confidence            78999999872        35699999999999999999999999999999999999876 59999999987542  234


Q ss_pred             cEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHHH
Q psy13765        109 VSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSIA  186 (606)
Q Consensus       109 ~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~IA  186 (606)
                      .++|++|++.+++.+|+.+.+... ..      ..++...+ ++++.   +++..-.+- .++.+...+|||||||+.||
T Consensus        71 ~~~~v~q~~~~~~~~tv~e~l~~~-~~------~~~~~~~~~~~~~~---~~l~~~gl~~~~~~~~~~LSgGq~qrl~la  140 (255)
T PRK11248         71 ERGVVFQNEGLLPWRNVQDNVAFG-LQ------LAGVEKMQRLEIAH---QMLKKVGLEGAEKRYIWQLSGGQRQRVGIA  140 (255)
T ss_pred             cEEEEeCCCccCCCCcHHHHHHhH-HH------HcCCCHHHHHHHHH---HHHHHcCChhHhhCChhhCCHHHHHHHHHH
Confidence            689999999999989987765431 11      00122222 33332   233222221 45788899999999999999


Q ss_pred             HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeec--CCcEEEEcChh
Q psy13765        187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLS--GGQCLYQGATD  260 (606)
Q Consensus       187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~--~G~~~~~G~~~  260 (606)
                      +||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++. .+.++||++++|+  +|+++..++.+
T Consensus       141 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~  216 (255)
T PRK11248        141 RALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN  216 (255)
T ss_pred             HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence            999999999999999999999999999999999865 5899999999987 5778999999998  59999888754

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=100.00  E-value=4.1e-40  Score=326.71  Aligned_cols=211  Identities=26%  Similarity=0.430  Sum_probs=164.1

Q ss_pred             EEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhccc
Q psy13765         30 KFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRV  109 (606)
Q Consensus        30 ~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~  109 (606)
                      +++||+++|+        ++.+++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++..  ..++.
T Consensus         1 ~~~~l~~~~~--------~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~--~~~~~   69 (213)
T cd03235           1 EVEDLTVSYG--------GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP-TSGSIRVFGKPLE--KERKR   69 (213)
T ss_pred             CcccceeEEC--------CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CCCEEEECCccHH--HHHhh
Confidence            3678888862        35699999999999999999999999999999999999876 5999999997653  45678


Q ss_pred             EEEEccCCCCCC--CCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHH
Q psy13765        110 SCYIQQDDRLQP--LLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL  187 (606)
Q Consensus       110 ~~yv~Q~~~l~~--~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~  187 (606)
                      ++|++|++.+++  .+|+.+.+....... .. ..+....-.++++.-+.+.+.-.  -..+.+...+|||||||+.||+
T Consensus        70 i~~v~q~~~~~~~~~~tv~e~l~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~  145 (213)
T cd03235          70 IGYVPQRRSIDRDFPISVRDVVLMGLYGH-KG-LFRRLSKADKAKVDEALERVGLS--ELADRQIGELSGGQQQRVLLAR  145 (213)
T ss_pred             eEEeccccccccCCCCcHHHHHHhccccc-cc-cccCCCHHHHHHHHHHHHHcCCH--HHHhCCcccCCHHHHHHHHHHH
Confidence            999999987643  378877665421110 00 00011112234443333332211  1467888999999999999999


Q ss_pred             hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        188 ELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       188 aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      ||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.++||++++|++| +++.|
T Consensus       146 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g  213 (213)
T cd03235         146 ALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG  213 (213)
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence            999999999999999999999999999999999878999999999976 577899999999876 55544

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.8e-40  Score=323.11  Aligned_cols=198  Identities=22%  Similarity=0.447  Sum_probs=173.6

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhc
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR  107 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~  107 (606)
                      .+++++|++++        +.+.+++|+||++++|++++++|||||||||.+++|.|++.+ ++|+|.++|.+.+ ...+
T Consensus         2 ~L~ie~vtK~F--------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~-~~G~I~~~g~~~~-~~~~   71 (300)
T COG4152           2 ALEIEGVTKSF--------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP-TEGEITWNGGPLS-QEIK   71 (300)
T ss_pred             ceEEecchhcc--------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc-cCceEEEcCcchh-hhhh
Confidence            58899999986        678999999999999999999999999999999999999887 5999999999876 4567


Q ss_pred             ccEEEEccCCCCCCCCcHHH----------------------HHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc
Q psy13765        108 RVSCYIQQDDRLQPLLTIEN----------------------VMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV  165 (606)
Q Consensus       108 ~~~~yv~Q~~~l~~~ltv~~----------------------~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~  165 (606)
                      .+|||+|.+.-|+|.+||++                      +|+.+++......++.+||.|++|++.+-         
T Consensus        72 ~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfi---------  142 (300)
T COG4152          72 NRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFI---------  142 (300)
T ss_pred             hhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHH---------
Confidence            88999999999999999844                      44455666666666667777777776654         


Q ss_pred             cccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhccee
Q psy13765        166 MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQV  245 (606)
Q Consensus       166 ~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v  245 (606)
                                           .+++++|++++||||+|||||.+.+.+.+.+.+++++|.|||+++|+++ .+.++||++
T Consensus       143 ---------------------saviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~l  200 (300)
T COG4152         143 ---------------------SAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRL  200 (300)
T ss_pred             ---------------------HHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhh
Confidence                                 4555559999999999999999999999999999999999999999987 589999999


Q ss_pred             eeecCCcEEEEcChhHHHHHH
Q psy13765        246 YLLSGGQCLYQGATDQLVNYL  266 (606)
Q Consensus       246 ~~L~~G~~~~~G~~~~~~~~f  266 (606)
                      ++|++|+.|.+|+.+++.+-|
T Consensus       201 lmL~kG~~V~~G~v~~ir~~~  221 (300)
T COG4152         201 LMLKKGQTVLYGTVEDIRRSF  221 (300)
T ss_pred             heecCCceEEeccHHHHHHhc
Confidence            999999999999999998744

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=100.00  E-value=8.5e-40  Score=326.15  Aligned_cols=209  Identities=25%  Similarity=0.398  Sum_probs=165.5

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---hh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---NA  105 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~~  105 (606)
                      |+++||+++|+.+    .+.+++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...   ..
T Consensus         2 l~~~~v~~~~~~~----~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~   76 (221)
T TIGR02211         2 LKCENLGKRYQEG----KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP-TSGEVLFNGQSLSKLSSNE   76 (221)
T ss_pred             EEEEeeeEEccCC----CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEEhhhcCHhH
Confidence            6789999987421    1125699999999999999999999999999999999999876 59999999986431   11


Q ss_pred             ---hc-ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchh
Q psy13765        106 ---FR-RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQ  179 (606)
Q Consensus       106 ---~~-~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~  179 (606)
                         ++ +.++|++|++.+++.+|+.+.+.... .      ...+...+ ++++   .+++..-.+- .+|.+...+|+||
T Consensus        77 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~-~------~~~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~LS~G~  146 (221)
T TIGR02211        77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPL-L------IGKKSVKEAKERA---YEMLEKVGLEHRINHRPSELSGGE  146 (221)
T ss_pred             HHHHHHhcEEEEecccccCCCCcHHHHHHHHH-H------hcCCCHHHHHHHH---HHHHHHcCChhhhhCChhhCCHHH
Confidence               23 57999999999999899877665311 0      00111111 2233   3343333332 4688889999999


Q ss_pred             hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765        180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCL  254 (606)
Q Consensus       180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~  254 (606)
                      |||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+ +.+|++++|++|+++
T Consensus       147 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~  220 (221)
T TIGR02211       147 RQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF  220 (221)
T ss_pred             HHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence            99999999999999999999999999999999999999999864 899999999987 45 458999999999875

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=100.00  E-value=1.2e-39  Score=329.60  Aligned_cols=221  Identities=24%  Similarity=0.332  Sum_probs=175.9

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---h
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---N  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~  104 (606)
                      .|+++|++++++        ++++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...   .
T Consensus         2 ~i~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~   72 (242)
T TIGR03411         2 ILYLEGLSVSFD--------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP-DEGSVLFGGTDLTGLPEH   72 (242)
T ss_pred             eEEEEeeEEEcC--------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEEECCeecCCCCHH
Confidence            378999999872        35699999999999999999999999999999999999876 59999999976432   2


Q ss_pred             -hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccC---ChH-HHHHHHHHHHHhcCCcccccCCCCCCCCchh
Q psy13765        105 -AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQL---SGG-QKKRLSIALELINNPRVMFLDEPTTSNPNDQ  179 (606)
Q Consensus       105 -~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~l---SgG-qrqRv~ia~~L~~~~~~~~~de~~~~~s~g~  179 (606)
                       ..++.++|++|++.+++.+|+.+.+.......  ......+   ... .++++.-+.+.+.-.  -..|.+...+|+||
T Consensus        73 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Ge  148 (242)
T TIGR03411        73 QIARAGIGRKFQKPTVFENLTVFENLELALPRD--KSVFASLFFRLSAEEKDRIEEVLETIGLA--DEADRLAGLLSHGQ  148 (242)
T ss_pred             HHHhcCeeEeccccccCCCCCHHHHHHHhhhcc--cccccccccccHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHH
Confidence             23456999999999999999987765422111  0000011   111 233333233332211  14688899999999


Q ss_pred             hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765        180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT  259 (606)
Q Consensus       180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~  259 (606)
                      |||+.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.++||++++|++|+++..|++
T Consensus       149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~~~~~~~~  226 (242)
T TIGR03411       149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQGSVLAEGSL  226 (242)
T ss_pred             HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEECCeEEeeCCH
Confidence            9999999999999999999999999999999999999999976 799999999976 57789999999999999999998


Q ss_pred             hHHH
Q psy13765        260 DQLV  263 (606)
Q Consensus       260 ~~~~  263 (606)
                      +++.
T Consensus       227 ~~~~  230 (242)
T TIGR03411       227 DQVQ  230 (242)
T ss_pred             HHHh
Confidence            7763

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=100.00  E-value=8.7e-40  Score=371.62  Aligned_cols=200  Identities=32%  Similarity=0.526  Sum_probs=163.7

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCcc---CC
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS---RN  102 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~---~~  102 (606)
                      .-.++++||+|+|..      .+..+|+|+|++|++||.+||+|+||||||||+|+|+|++.| .+|+|.+||.+   .+
T Consensus       469 ~g~I~~~nvsf~y~~------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p-~~G~I~~dg~dl~~i~  541 (709)
T COG2274         469 QGEIEFENVSFRYGP------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP-QQGRILLDGVDLNDID  541 (709)
T ss_pred             CceEEEEEEEEEeCC------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEeHHhcC
Confidence            347999999999853      334799999999999999999999999999999999999887 59999999986   45


Q ss_pred             hhhhcccEEEEccCCCCCCCCcH------------HHHHHHc--------------CCccccCCccccCChHHHHHHHHH
Q psy13765        103 INAFRRVSCYIQQDDRLQPLLTI------------ENVMSLL--------------GLDESQNTRSSQLSGGQKKRLSIA  156 (606)
Q Consensus       103 ~~~~~~~~~yv~Q~~~l~~~ltv------------~~~l~~~--------------gl~~~~~~~~~~lSgGqrqRv~ia  156 (606)
                      ...+|+.+|||+||+.++....-            |++++.+              |++....+...+||||||||++| 
T Consensus       542 ~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlal-  620 (709)
T COG2274         542 LASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLAL-  620 (709)
T ss_pred             HHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHH-
Confidence            67899999999999998865322            3333322              33333334444566666666665 


Q ss_pred             HHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q psy13765        157 LELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSA  236 (606)
Q Consensus       157 ~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~  236 (606)
                                                   ||||+++|+||+||||||+||+.+...+.+.|+++.+ |+|+|+++|+++ 
T Consensus       621 -----------------------------ARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~-  669 (709)
T COG2274         621 -----------------------------ARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLS-  669 (709)
T ss_pred             -----------------------------HHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccch-
Confidence                                         5555555999999999999999999999999999865 799999999987 


Q ss_pred             HHHhhcceeeeecCCcEEEEcChhHHHHH
Q psy13765        237 TLFQMFDQVYLLSGGQCLYQGATDQLVNY  265 (606)
Q Consensus       237 ~i~~~~D~v~~L~~G~~~~~G~~~~~~~~  265 (606)
                       ..+.|||+++|++|+++.+|+++|+.+.
T Consensus       670 -ti~~adrIiVl~~Gkiv~~gs~~ell~~  697 (709)
T COG2274         670 -TIRSADRIIVLDQGKIVEQGSHEELLAQ  697 (709)
T ss_pred             -HhhhccEEEEccCCceeccCCHHHHHHh
Confidence             4689999999999999999999998863

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=100.00  E-value=1.3e-39  Score=334.09  Aligned_cols=225  Identities=25%  Similarity=0.373  Sum_probs=177.0

Q ss_pred             EEEEEeeEEEEecCCcc-cccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---
Q psy13765         28 EIKFKDLTYTVSTGLGF-KQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---  103 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~-~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---  103 (606)
                      .|+++||+++++.+... .++++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...   
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~   80 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP-AQGTVSFRGQDLYQLDR   80 (265)
T ss_pred             eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEEccccCH
Confidence            37899999998421000 01246799999999999999999999999999999999999876 59999999976531   


Q ss_pred             h---hhcccEEEEccCC--CCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCcc--cccCCCCCCC
Q psy13765        104 N---AFRRVSCYIQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRV--MFLDEPTTSN  175 (606)
Q Consensus       104 ~---~~~~~~~yv~Q~~--~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~--~~~de~~~~~  175 (606)
                      .   .+++.++|++|++  .+++.+|+.+.+... +...     ..++.- .++++.   +++..-.+  .++|.+...+
T Consensus        81 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~-~~~~-----~~~~~~~~~~~~~---~~l~~~gl~~~~~~~~~~~L  151 (265)
T TIGR02769        81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEP-LRHL-----TSLDESEQKARIA---ELLDMVGLRSEDADKLPRQL  151 (265)
T ss_pred             HHHHHHhhceEEEecChhhhcCCCCCHHHHHHHH-HHHh-----cCCCHHHHHHHHH---HHHHHcCCChhhhhCChhhC
Confidence            1   2456799999997  467788987765421 1100     112221 233333   23333233  2568899999


Q ss_pred             CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765        176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCL  254 (606)
Q Consensus       176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~  254 (606)
                      |+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.++||++++|++|+++
T Consensus       152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~  230 (265)
T TIGR02769       152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDKGQIV  230 (265)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeCCEEE
Confidence            999999999999999999999999999999999999999999999875 899999999976 567899999999999999


Q ss_pred             EEcChhHHH
Q psy13765        255 YQGATDQLV  263 (606)
Q Consensus       255 ~~G~~~~~~  263 (606)
                      +.|+++++.
T Consensus       231 ~~g~~~~~~  239 (265)
T TIGR02769       231 EECDVAQLL  239 (265)
T ss_pred             EECCHHHHc
Confidence            999998874

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-39  Score=330.93  Aligned_cols=220  Identities=25%  Similarity=0.329  Sum_probs=173.3

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--C--CCccEEEECCccC
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS--N--GVTGQILTNGHSR  101 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~--~--~~~G~I~~~G~~~  101 (606)
                      +..|+++||+++|+        ++.+|+|+|+++++||+++|+||||||||||+++|+|+..  +  +.+|+|.++|++.
T Consensus         4 ~~~l~~~~l~~~~~--------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i   75 (253)
T PRK14242          4 PPKMEARGLSFFYG--------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENI   75 (253)
T ss_pred             CcEEEEeeeEEEEC--------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEc
Confidence            34699999999873        3569999999999999999999999999999999999853  1  2589999999765


Q ss_pred             C-----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccC-Ch-HHHHHHHHHHHHhcCCc-c-cccCCCC
Q psy13765        102 N-----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQL-SG-GQKKRLSIALELINNPR-V-MFLDEPT  172 (606)
Q Consensus       102 ~-----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~l-Sg-GqrqRv~ia~~L~~~~~-~-~~~de~~  172 (606)
                      .     ...+++.++|++|++.+++. |+.+.+... ... .     .. +. ..++++.-+.+.+.-.+ + -.+|++.
T Consensus        76 ~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~-~~~-~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~  147 (253)
T PRK14242         76 YDPHVDVVELRRRVGMVFQKPNPFPK-SIFENVAYG-LRV-N-----GVKDKAYLAERVERSLRHAALWDEVKDRLHESA  147 (253)
T ss_pred             cccccCHHHHhhcEEEEecCCCCCcC-cHHHHHHHH-HHH-c-----CCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCc
Confidence            3     12456789999999988884 886655431 110 0     01 11 11233332222222111 1 1468889


Q ss_pred             CCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765        173 TSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ  252 (606)
Q Consensus       173 ~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~  252 (606)
                      ..+|||||||+.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|+++ .+.++||++++|++|+
T Consensus       148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~G~  225 (253)
T PRK14242        148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYMGK  225 (253)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEECCE
Confidence            99999999999999999999999999999999999999999999999954 799999999987 4678999999999999


Q ss_pred             EEEEcChhHHH
Q psy13765        253 CLYQGATDQLV  263 (606)
Q Consensus       253 ~~~~G~~~~~~  263 (606)
                      ++..|+++++.
T Consensus       226 i~~~g~~~~~~  236 (253)
T PRK14242        226 LIEVGPTEQIF  236 (253)
T ss_pred             EEEeCCHHHHH
Confidence            99999988763

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.1e-39  Score=335.22  Aligned_cols=222  Identities=19%  Similarity=0.323  Sum_probs=172.7

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----  103 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----  103 (606)
                      .++++|++++|+...  +...+.+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...    
T Consensus         4 ~l~~~~l~~~~~~~~--~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~i~g~~i~~~~~~   80 (280)
T PRK13633          4 MIKCKNVSYKYESNE--ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP-SEGKVYVDGLDTSDEENL   80 (280)
T ss_pred             eEEEeeeEEEcCCCC--CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEeccccccH
Confidence            589999999985210  01135799999999999999999999999999999999999876 59999999986532    


Q ss_pred             hhhcccEEEEccCCCC-CCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc-cccCCCCCCCCchhh
Q psy13765        104 NAFRRVSCYIQQDDRL-QPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV-MFLDEPTTSNPNDQK  180 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l-~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~  180 (606)
                      ...++.+||++|++.. +...|+.+.+.. +...      .+.+..+ ++++.   +++..-.+ -..|.+...+|+|||
T Consensus        81 ~~~~~~i~~v~q~~~~~~~~~~v~~~l~~-~~~~------~~~~~~~~~~~~~---~~l~~~gL~~~~~~~~~~LS~G~~  150 (280)
T PRK13633         81 WDIRNKAGMVFQNPDNQIVATIVEEDVAF-GPEN------LGIPPEEIRERVD---ESLKKVGMYEYRRHAPHLLSGGQK  150 (280)
T ss_pred             HHHhhheEEEecChhhhhccccHHHHHHh-hHhh------cCCCHHHHHHHHH---HHHHHCCCHhHhhCCcccCCHHHH
Confidence            3457789999999742 223567655432 1110      0122222 23332   23332223 146788889999999


Q ss_pred             hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765        181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT  259 (606)
Q Consensus       181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~  259 (606)
                      ||+.||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++. +. .||++++|++|+++..|++
T Consensus       151 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~-~~d~v~~l~~G~i~~~g~~  228 (280)
T PRK13633        151 QRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AV-EADRIIVMDSGKVVMEGTP  228 (280)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hh-cCCEEEEEECCEEEEecCH
Confidence            9999999999999999999999999999999999999999764 9999999999874 54 4999999999999999999


Q ss_pred             hHHHH
Q psy13765        260 DQLVN  264 (606)
Q Consensus       260 ~~~~~  264 (606)
                      +++..
T Consensus       229 ~~~~~  233 (280)
T PRK13633        229 KEIFK  233 (280)
T ss_pred             HHHhc
Confidence            88753

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-39  Score=346.34  Aligned_cols=209  Identities=23%  Similarity=0.402  Sum_probs=166.5

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC------
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN------  102 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~------  102 (606)
                      |++ ||+++|.        ++. + |+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++..      
T Consensus         2 l~~-~l~k~~~--------~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p-~~G~I~~~g~~~~~~~~~~   69 (352)
T PRK11144          2 LEL-NFKQQLG--------DLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP-QKGRIVLNGRVLFDAEKGI   69 (352)
T ss_pred             eEE-EEEEEeC--------CEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEcccccccc
Confidence            566 8888862        232 3 89999999999999999999999999999999876 5999999997643      


Q ss_pred             -hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhh
Q psy13765        103 -INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKK  181 (606)
Q Consensus       103 -~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~k  181 (606)
                       ....++.++||+|++.+++.+|+.+.+.. ++..           ..++++.-..+.+.-.  -.+|.+...|||||||
T Consensus        70 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~-~~~~-----------~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGq~q  135 (352)
T PRK11144         70 CLPPEKRRIGYVFQDARLFPHYKVRGNLRY-GMAK-----------SMVAQFDKIVALLGIE--PLLDRYPGSLSGGEKQ  135 (352)
T ss_pred             ccchhhCCEEEEcCCcccCCCCcHHHHHHh-hhhh-----------hhHHHHHHHHHHcCCc--hhhhCCcccCCHHHHH
Confidence             12346789999999999999998665542 2110           1122332222222111  1456777778888888


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD  260 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~  260 (606)
                      |+.|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.++||++++|++|+++..|+++
T Consensus       136 RvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~g~~~  214 (352)
T PRK11144        136 RVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKAFGPLE  214 (352)
T ss_pred             HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEEecCHH
Confidence            888888888889999999999999999999999999999876 899999999986 578999999999999999999999


Q ss_pred             HHHH
Q psy13765        261 QLVN  264 (606)
Q Consensus       261 ~~~~  264 (606)
                      ++..
T Consensus       215 ~i~~  218 (352)
T PRK11144        215 EVWA  218 (352)
T ss_pred             HHHh
Confidence            8753

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=100.00  E-value=2.3e-39  Score=317.31  Aligned_cols=191  Identities=47%  Similarity=0.843  Sum_probs=159.0

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC--CCCCccEEEECCccCChh
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR--SNGVTGQILTNGHSRNIN  104 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~--~~~~~G~I~~~G~~~~~~  104 (606)
                      +.|+++||+++|+...  +...+.+|+|+|+++++||+++|+||||||||||+++|+|+.  ++ .+|+|.++|++....
T Consensus         2 ~~l~~~~ls~~~~~~~--~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~-~~G~i~~~g~~~~~~   78 (194)
T cd03213           2 VTLSFRNLTVTVKSSP--SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG-VSGEVLINGRPLDKR   78 (194)
T ss_pred             cEEEEEeeEEEEecCC--CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-CceEEEECCEeCchH
Confidence            4689999999984210  001357999999999999999999999999999999999998  65 699999999876544


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS  184 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~  184 (606)
                      ..++.++|++|++.+++.+|+.+.+....       ...+||||||||+++|++|+.+                      
T Consensus        79 ~~~~~i~~~~q~~~~~~~~t~~~~i~~~~-------~~~~LS~G~~qrv~laral~~~----------------------  129 (194)
T cd03213          79 SFRKIIGYVPQDDILHPTLTVRETLMFAA-------KLRGLSGGERKRVSIALELVSN----------------------  129 (194)
T ss_pred             hhhheEEEccCcccCCCCCcHHHHHHHHH-------HhccCCHHHHHHHHHHHHHHcC----------------------
Confidence            56778999999999999999977654311       0116777777777766655555                      


Q ss_pred             HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                              |++++|||||+|||+.++..+.+.|++++++|+|+|+++|++...+.+.||++++|++|++++.|
T Consensus       130 --------p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~  194 (194)
T cd03213         130 --------PSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG  194 (194)
T ss_pred             --------CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence                    99999999999999999999999999998789999999999875577899999999999998764

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-39  Score=342.52  Aligned_cols=229  Identities=19%  Similarity=0.250  Sum_probs=176.6

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC---CCccEEEECCccCC--
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN---GVTGQILTNGHSRN--  102 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~---~~~G~I~~~G~~~~--  102 (606)
                      .|+++||+++|+.+    .+.+.+|+|||++|++||+++|+|+||||||||+++|+|+.++   ..+|+|.++|++..  
T Consensus         3 ~L~v~~l~~~y~~~----~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~   78 (330)
T PRK15093          3 LLDIRNLTIEFKTS----DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRL   78 (330)
T ss_pred             eEEEeeeEEEEeCC----CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcC
Confidence            58999999998532    2345799999999999999999999999999999999999753   25899999998653  


Q ss_pred             -hhhh----cccEEEEccCCC--CCCCCcHHHHHHHcCCccccCCccccCCh-H-HHHHHHHHHHHhcCCcc-cccCCCC
Q psy13765        103 -INAF----RRVSCYIQQDDR--LQPLLTIENVMSLLGLDESQNTRSSQLSG-G-QKKRLSIALELINNPRV-MFLDEPT  172 (606)
Q Consensus       103 -~~~~----~~~~~yv~Q~~~--l~~~ltv~~~l~~~gl~~~~~~~~~~lSg-G-qrqRv~ia~~L~~~~~~-~~~de~~  172 (606)
                       ....    ++.++||+|++.  +.|.+|+.+.+... +...... ....+. . .++++.-+.+.+.-.+. -.+|...
T Consensus        79 ~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~-~~~~~~~-~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p  156 (330)
T PRK15093         79 SPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQN-IPGWTYK-GRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFP  156 (330)
T ss_pred             CHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHH-HHhhhcc-ccccccHHHHHHHHHHHHHHCCCCChHHHHhCCc
Confidence             2222    347999999986  67888886655431 1100000 000111 1 12343322332222211 2467888


Q ss_pred             CCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCC
Q psy13765        173 TSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGG  251 (606)
Q Consensus       173 ~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G  251 (606)
                      ..|||||||||.||+||+.+|++|++||||+|||+.++.+++++|++++++ |.|||++|||+. .+.++||++++|.+|
T Consensus       157 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm~~G  235 (330)
T PRK15093        157 YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVLYCG  235 (330)
T ss_pred             hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECC
Confidence            999999999999999999999999999999999999999999999999875 999999999976 577899999999999


Q ss_pred             cEEEEcChhHHH
Q psy13765        252 QCLYQGATDQLV  263 (606)
Q Consensus       252 ~~~~~G~~~~~~  263 (606)
                      ++++.|+++++.
T Consensus       236 ~ive~g~~~~i~  247 (330)
T PRK15093        236 QTVETAPSKELV  247 (330)
T ss_pred             EEEEECCHHHHH
Confidence            999999998875

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-39  Score=333.78  Aligned_cols=220  Identities=23%  Similarity=0.393  Sum_probs=176.4

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---  102 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---  102 (606)
                      ...++++|++++++.      +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..   
T Consensus         5 ~~~l~~~nl~~~~~~------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~I~~~g~~i~~~~   77 (271)
T PRK13632          5 SVMIKVENVSFSYPN------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP-QSGEIKIDGITISKEN   77 (271)
T ss_pred             ceEEEEEeEEEEcCC------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEecCcCC
Confidence            346999999998731      245799999999999999999999999999999999999876 5999999998753   


Q ss_pred             hhhhcccEEEEccCCC-CCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhh
Q psy13765        103 INAFRRVSCYIQQDDR-LQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQK  180 (606)
Q Consensus       103 ~~~~~~~~~yv~Q~~~-l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~  180 (606)
                      ...+++.++|++|++. .++.+|+.+.+.. +...      ...+..+.  -..+.+++..-.+- .+|.+...+|+|||
T Consensus        78 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~-~~~~------~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  148 (271)
T PRK13632         78 LKEIRKKIGIIFQNPDNQFIGATVEDDIAF-GLEN------KKVPPKKM--KDIIDDLAKKVGMEDYLDKEPQNLSGGQK  148 (271)
T ss_pred             HHHHhcceEEEEeCHHHhcCcccHHHHHHh-HHHH------cCCCHHHH--HHHHHHHHHHcCCHHHhhCCcccCCHHHH
Confidence            2356778999999974 5667888766543 2111      01222211  12233444443332 56888899999999


Q ss_pred             hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765        181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT  259 (606)
Q Consensus       181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~  259 (606)
                      ||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ ++|||+++|+++. + ..||++++|++|+++..|++
T Consensus       149 qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~g~~  226 (271)
T PRK13632        149 QRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSEGKLIAQGKP  226 (271)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEECCEEEEecCH
Confidence            9999999999999999999999999999999999999999876 5999999999874 5 47999999999999999998


Q ss_pred             hHHH
Q psy13765        260 DQLV  263 (606)
Q Consensus       260 ~~~~  263 (606)
                      +++.
T Consensus       227 ~~~~  230 (271)
T PRK13632        227 KEIL  230 (271)
T ss_pred             HHHh
Confidence            8764

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.9e-39  Score=349.01  Aligned_cols=225  Identities=19%  Similarity=0.300  Sum_probs=177.8

Q ss_pred             EEEEEeeEEEEecCCc----------------ccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCc
Q psy13765         28 EIKFKDLTYTVSTGLG----------------FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT   91 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~----------------~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~   91 (606)
                      .|+++||++.+.....                ..++...+|+|+|++|++||+++|+||||||||||+|+|+|+.++ .+
T Consensus         4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p-~s   82 (400)
T PRK10070          4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP-TR   82 (400)
T ss_pred             EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC-CC
Confidence            5888999988754310                012334589999999999999999999999999999999999876 59


Q ss_pred             cEEEECCccCC---hhh----hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCC
Q psy13765         92 GQILTNGHSRN---INA----FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNP  163 (606)
Q Consensus        92 G~I~~~G~~~~---~~~----~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~  163 (606)
                      |+|.++|++..   ...    .++.++||+|++.+++.+|+.+.+... +.      ..+.+.-+ ++++   .+++..-
T Consensus        83 G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~-~~------~~~~~~~~~~~~~---~e~L~~~  152 (400)
T PRK10070         83 GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFG-ME------LAGINAEERREKA---LDALRQV  152 (400)
T ss_pred             CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHH-HH------hcCCCHHHHHHHH---HHHHHHc
Confidence            99999998653   122    235799999999999999997766431 11      01122212 2333   2333333


Q ss_pred             ccc-ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhh
Q psy13765        164 RVM-FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQM  241 (606)
Q Consensus       164 ~~~-~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~  241 (606)
                      .+- .+|.+...||||||||+.|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++
T Consensus       153 gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~  231 (400)
T PRK10070        153 GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRI  231 (400)
T ss_pred             CCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHh
Confidence            332 56888889999999999999999999999999999999999999999999999976 4899999999986 57789


Q ss_pred             cceeeeecCCcEEEEcChhHHHH
Q psy13765        242 FDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       242 ~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      ||++++|++|+++..|+++++..
T Consensus       232 ~Dri~vL~~G~i~~~g~~~~l~~  254 (400)
T PRK10070        232 GDRIAIMQNGEVVQVGTPDEILN  254 (400)
T ss_pred             CCEEEEEECCEEEecCCHHHHHh
Confidence            99999999999999999988743

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=1.4e-39  Score=335.47  Aligned_cols=233  Identities=28%  Similarity=0.470  Sum_probs=202.2

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC----CccEEEECCccC-
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG----VTGQILTNGHSR-  101 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~----~~G~I~~~G~~~-  101 (606)
                      .-++++||++.+...    .+...++++|||++++||.+||+|.||||||-..+.+.|+++.+    .+|+|.++|++. 
T Consensus         5 ~lL~v~nLsV~f~~~----~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll   80 (534)
T COG4172           5 PLLSIRNLSVAFHQE----GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLL   80 (534)
T ss_pred             cceeeeccEEEEecC----CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhh
Confidence            358999999988543    35678999999999999999999999999999999999987642    479999999863 


Q ss_pred             --Chhhhc----ccEEEEccCC--CCCCCCcH-----------------------HHHHHHcCCcc---ccCCccccCCh
Q psy13765        102 --NINAFR----RVSCYIQQDD--RLQPLLTI-----------------------ENVMSLLGLDE---SQNTRSSQLSG  147 (606)
Q Consensus       102 --~~~~~~----~~~~yv~Q~~--~l~~~ltv-----------------------~~~l~~~gl~~---~~~~~~~~lSg  147 (606)
                        +.++++    .+|+.+||+|  .+.|..|+                       -++++..|+.+   ..+..+++|||
T Consensus        81 ~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSG  160 (534)
T COG4172          81 AASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSG  160 (534)
T ss_pred             cCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCc
Confidence              333333    4699999998  45666664                       34566677755   45677899999


Q ss_pred             HHHHHHHHHHHHhcCCcccccCCCCCC-----------------------------------------------------
Q psy13765        148 GQKKRLSIALELINNPRVMFLDEPTTS-----------------------------------------------------  174 (606)
Q Consensus       148 GqrqRv~ia~~L~~~~~~~~~de~~~~-----------------------------------------------------  174 (606)
                      ||||||.||.||+++|++++.||||+.                                                     
T Consensus       161 GqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~  240 (534)
T COG4172         161 GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETG  240 (534)
T ss_pred             chhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecC
Confidence            999999999999999999999999998                                                     


Q ss_pred             --------------------------------------------------------------------------------
Q psy13765        175 --------------------------------------------------------------------------------  174 (606)
Q Consensus       175 --------------------------------------------------------------------------------  174 (606)
                                                                                                      
T Consensus       241 ~t~~lF~~PqHpYTr~Ll~aeP~g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVG  320 (534)
T COG4172         241 TTETLFAAPQHPYTRKLLAAEPSGDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVG  320 (534)
T ss_pred             cHHHHhhCCCChHHHHHHhcCCCCCCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEe
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q psy13765        175 --------------------------------------------------------------------------------  174 (606)
Q Consensus       175 --------------------------------------------------------------------------------  174 (606)
                                                                                                      
T Consensus       321 ESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~  400 (534)
T COG4172         321 ESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAA  400 (534)
T ss_pred             cCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHH
Confidence                                                                                            


Q ss_pred             --------------------------CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q psy13765        175 --------------------------NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTI  227 (606)
Q Consensus       175 --------------------------~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~ti  227 (606)
                                                -|||||||++||||++.+|++++||||||.||-.-+.+++++|++|.++ |.+-
T Consensus       401 eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsY  480 (534)
T COG4172         401 ERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSY  480 (534)
T ss_pred             HHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeE
Confidence                                      3569999999999999999999999999999999999999999999874 9999


Q ss_pred             EEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        228 ICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       228 i~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      ++++||.. .+..+||+|++|++|++++.|+.+++.+
T Consensus       481 LFISHDL~-VvrAl~~~viVm~~GkiVE~G~~~~if~  516 (534)
T COG4172         481 LFISHDLA-VVRALCHRVIVMRDGKIVEQGPTEAVFA  516 (534)
T ss_pred             EEEeccHH-HHHHhhceEEEEeCCEEeeeCCHHHHhc
Confidence            99999976 5889999999999999999999999864

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.7e-39  Score=328.81  Aligned_cols=219  Identities=21%  Similarity=0.329  Sum_probs=172.7

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC---CCC-CccEEEECCccCC
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR---SNG-VTGQILTNGHSRN  102 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~---~~~-~~G~I~~~G~~~~  102 (606)
                      +.|+++|+++.++        ++++|+|+|+++++||+++|+||||||||||+++|+|+.   ++. .+|+|.++|++..
T Consensus         2 ~~l~~~~~~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~   73 (250)
T PRK14245          2 VKIDARDVNFWYG--------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIY   73 (250)
T ss_pred             cEEEEEEEEEEEC--------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecc
Confidence            4688999999872        356999999999999999999999999999999999962   331 4899999998653


Q ss_pred             h-----hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH--HHHHHHHHHHHhcCCc-c-cccCCCCC
Q psy13765        103 I-----NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG--QKKRLSIALELINNPR-V-MFLDEPTT  173 (606)
Q Consensus       103 ~-----~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG--qrqRv~ia~~L~~~~~-~-~~~de~~~  173 (606)
                      .     ...++.++|++|++.+++ .|+.+.+.. +...      ...+..  ..+++.-+.+.+.-.+ + -.++++..
T Consensus        74 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~-~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~  145 (250)
T PRK14245         74 DKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAY-GLRV------NGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAF  145 (250)
T ss_pred             cccccHHHHhhheEEEecCCccCc-ccHHHHHHH-HHHH------cCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcc
Confidence            2     345678999999998887 588665542 1110      011111  1233322222222111 1 14678899


Q ss_pred             CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765        174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC  253 (606)
Q Consensus       174 ~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~  253 (606)
                      .+|+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||+++|+++ .+.+.||++++|++|++
T Consensus       146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~G~~  223 (250)
T PRK14245        146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYMGEM  223 (250)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEECCEE
Confidence            999999999999999999999999999999999999999999999995 4799999999987 46789999999999999


Q ss_pred             EEEcChhHHH
Q psy13765        254 LYQGATDQLV  263 (606)
Q Consensus       254 ~~~G~~~~~~  263 (606)
                      ++.|+++++.
T Consensus       224 ~~~~~~~~~~  233 (250)
T PRK14245        224 VEYDDTKKIF  233 (250)
T ss_pred             EEECCHHHHh
Confidence            9999998874

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=100.00  E-value=1.7e-39  Score=321.76  Aligned_cols=208  Identities=22%  Similarity=0.411  Sum_probs=165.3

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhhc
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAFR  107 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~~  107 (606)
                      |+++|++++++        ++.  .|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+... ...+
T Consensus         1 i~~~~l~~~~~--------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~-~~G~i~~~g~~~~~~~~~~   69 (211)
T cd03298           1 VRLDKIRFSYG--------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP-QSGRVLINGVDVTAAPPAD   69 (211)
T ss_pred             CEEEeEEEEeC--------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEcCcCCHhH
Confidence            46899999873        222  399999999999999999999999999999999876 59999999986532 2235


Q ss_pred             ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHHH
Q psy13765        108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSIA  186 (606)
Q Consensus       108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~IA  186 (606)
                      +.++|++|++.+++.+|+.+.+... ...  ..   ....-.++++.   +++..-++- ..|.+...+|+|||||+.||
T Consensus        70 ~~i~~~~q~~~~~~~~tv~enl~~~-~~~--~~---~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia  140 (211)
T cd03298          70 RPVSMLFQENNLFAHLTVEQNVGLG-LSP--GL---KLTAEDRQAIE---VALARVGLAGLEKRLPGELSGGERQRVALA  140 (211)
T ss_pred             ccEEEEecccccCCCCcHHHHHhcc-ccc--cc---CccHHHHHHHH---HHHHHcCCHHHHhCCcccCCHHHHHHHHHH
Confidence            6799999999999999997766431 111  00   01111223333   223222332 46788899999999999999


Q ss_pred             HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      +||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|+++..|
T Consensus       141 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~  211 (211)
T cd03298         141 RVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG  211 (211)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence            9999999999999999999999999999999999764 899999999976 467889999999999998654

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=100.00  E-value=2.4e-39  Score=318.55  Aligned_cols=189  Identities=26%  Similarity=0.374  Sum_probs=158.5

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC--CCCCccEEEECCccCCh---
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR--SNGVTGQILTNGHSRNI---  103 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~--~~~~~G~I~~~G~~~~~---  103 (606)
                      ++++|++++++        ++.+++|+|+++++||+++|+||||||||||+++|+|..  ++ .+|+|.+||++...   
T Consensus         1 l~~~~l~~~~~--------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p-~~G~i~~~g~~~~~~~~   71 (200)
T cd03217           1 LEIKDLHVSVG--------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV-TEGEILFKGEDITDLPP   71 (200)
T ss_pred             CeEEEEEEEeC--------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCC-CccEEEECCEECCcCCH
Confidence            46899999873        356999999999999999999999999999999999984  44 68999999986532   


Q ss_pred             hhh-cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhH
Q psy13765        104 NAF-RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKR  182 (606)
Q Consensus       104 ~~~-~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~kr  182 (606)
                      ... ++.++|++|++.+++..++++.++         ....+||||||||+++|++|+.+                    
T Consensus        72 ~~~~~~~i~~v~q~~~~~~~~~~~~~l~---------~~~~~LS~G~~qrv~laral~~~--------------------  122 (200)
T cd03217          72 EERARLGIFLAFQYPPEIPGVKNADFLR---------YVNEGFSGGEKKRNEILQLLLLE--------------------  122 (200)
T ss_pred             HHHhhCcEEEeecChhhccCccHHHHHh---------hccccCCHHHHHHHHHHHHHhcC--------------------
Confidence            222 445999999999999999988762         22356888888888866666666                    


Q ss_pred             HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh-hcceeeeecCCcEEEEcChhH
Q psy13765        183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQ-MFDQVYLLSGGQCLYQGATDQ  261 (606)
Q Consensus       183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~-~~D~v~~L~~G~~~~~G~~~~  261 (606)
                                |++++|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+.+ .+|++++|++|++++.|+. +
T Consensus       123 ----------p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~-~  190 (200)
T cd03217         123 ----------PDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDK-E  190 (200)
T ss_pred             ----------CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccH-H
Confidence                      9999999999999999999999999999877999999999987 4555 7999999999999999954 4


Q ss_pred             HHHHHH
Q psy13765        262 LVNYLS  267 (606)
Q Consensus       262 ~~~~f~  267 (606)
                      +..++.
T Consensus       191 ~~~~~~  196 (200)
T cd03217         191 LALEIE  196 (200)
T ss_pred             HHhhhc
Confidence            555443

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.8e-39  Score=346.91  Aligned_cols=224  Identities=20%  Similarity=0.333  Sum_probs=177.2

Q ss_pred             EEEEeeEEEEecCCc----------------ccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcc
Q psy13765         29 IKFKDLTYTVSTGLG----------------FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTG   92 (606)
Q Consensus        29 l~~~nl~~~~~~~~~----------------~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G   92 (606)
                      |+++||.+-+..+..                .+.+...+|+|+||+|++||+++|+||||||||||+++|+|+.++ .+|
T Consensus         1 ~~~~~~~k~fg~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p-~~G   79 (382)
T TIGR03415         1 IDFKNVDVVFGDQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV-SRG   79 (382)
T ss_pred             CEEEeeEEeeCCCHHHHHHHHHcCCCHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCc
Confidence            468888888754321                123556799999999999999999999999999999999999876 599


Q ss_pred             EEEECCcc----C---Chh---hhc-ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhc
Q psy13765         93 QILTNGHS----R---NIN---AFR-RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELIN  161 (606)
Q Consensus        93 ~I~~~G~~----~---~~~---~~~-~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~  161 (606)
                      +|.++|++    .   +..   +++ +.++||+|++.++|.+|+.+.+.. ++.      ..+++..+++  ..+.+++.
T Consensus        80 ~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~-~~~------~~g~~~~~~~--~~a~e~le  150 (382)
T TIGR03415        80 SVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAF-GLE------MQGMPEAERR--KRVDEQLE  150 (382)
T ss_pred             EEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHH-HHH------hcCCCHHHHH--HHHHHHHH
Confidence            99999952    2   112   222 579999999999999998666543 211      0113333322  22333333


Q ss_pred             CCccc-ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHH
Q psy13765        162 NPRVM-FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLF  239 (606)
Q Consensus       162 ~~~~~-~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~  239 (606)
                      .-.+- ..|.+...+|||||||+.|||||+++|+||+|||||+|||+.++.++.+.|++++++ |+|||++|||++ ++.
T Consensus       151 ~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~  229 (382)
T TIGR03415       151 LVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EAL  229 (382)
T ss_pred             HcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH
Confidence            32331 457788889999999999999999999999999999999999999999999999875 999999999987 577


Q ss_pred             hhcceeeeecCCcEEEEcChhHHH
Q psy13765        240 QMFDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       240 ~~~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                      +++||+++|++|+++..|+++++.
T Consensus       230 ~l~DrI~vl~~G~iv~~g~~~ei~  253 (382)
T TIGR03415       230 KIGNRIAIMEGGRIIQHGTPEEIV  253 (382)
T ss_pred             HhCCEEEEEECCEEEEecCHHHHh
Confidence            999999999999999999998875

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=100.00  E-value=2.4e-39  Score=331.46  Aligned_cols=222  Identities=26%  Similarity=0.405  Sum_probs=177.2

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC--CccEEEECCccCCh--
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG--VTGQILTNGHSRNI--  103 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~--~~G~I~~~G~~~~~--  103 (606)
                      .|+++||+++++        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++.  .+|+|.++|++...  
T Consensus         4 ~l~~~nl~~~~~--------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~   75 (262)
T PRK09984          4 IIRVEKLAKTFN--------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREG   75 (262)
T ss_pred             EEEEeeEEEEeC--------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEeccccc
Confidence            589999999873        357999999999999999999999999999999999998653  36999999976421  


Q ss_pred             ------hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccC--Cc-cccCChHHHHHHHHHHHHhcCCccc-ccCCCCC
Q psy13765        104 ------NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQN--TR-SSQLSGGQKKRLSIALELINNPRVM-FLDEPTT  173 (606)
Q Consensus       104 ------~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~--~~-~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~  173 (606)
                            ...++.++|++|++.+++.+|+.+.+.. +......  .. ......-.++++   .+++..-++- ..|.+..
T Consensus        76 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~  151 (262)
T PRK09984         76 RLARDIRKSRANTGYIFQQFNLVNRLSVLENVLI-GALGSTPFWRTCFSWFTREQKQRA---LQALTRVGMVHFAHQRVS  151 (262)
T ss_pred             ccchhHHHHHhheEEEccccccccCCcHHHHHHh-hhcccccchhhhcccccHHHHHHH---HHHHHHcCCHHHHhCCcc
Confidence                  2346679999999999999999776643 2211100  00 011111122333   3343333332 5688999


Q ss_pred             CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765        174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQ  252 (606)
Q Consensus       174 ~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~  252 (606)
                      .+|+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|++|+
T Consensus       152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~g~  230 (262)
T PRK09984        152 TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALRQGH  230 (262)
T ss_pred             ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence            99999999999999999999999999999999999999999999999864 899999999986 4678999999999999


Q ss_pred             EEEEcChhHH
Q psy13765        253 CLYQGATDQL  262 (606)
Q Consensus       253 ~~~~G~~~~~  262 (606)
                      +++.|+++++
T Consensus       231 i~~~g~~~~~  240 (262)
T PRK09984        231 VFYDGSSQQF  240 (262)
T ss_pred             EEEeCCHHHh
Confidence            9999998764

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.6e-39  Score=329.48  Aligned_cols=220  Identities=24%  Similarity=0.298  Sum_probs=174.6

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccCC-
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSRN-  102 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~~-  102 (606)
                      .++++|++++|+        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++    +.+|+|.++|++.. 
T Consensus         4 ~l~i~~v~~~~~--------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~   75 (258)
T PRK14241          4 RIDVKDLNIYYG--------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYG   75 (258)
T ss_pred             cEEEeeEEEEEC--------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccc
Confidence            588999999873        35699999999999999999999999999999999999753    15899999997652 


Q ss_pred             ----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCC-cc-cccCCCCCCC
Q psy13765        103 ----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNP-RV-MFLDEPTTSN  175 (606)
Q Consensus       103 ----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~-~~-~~~de~~~~~  175 (606)
                          ...+++.++|++|++.+++.+|+.+.+.... . ..+    ..+..+ ++++.-+...+.-. .+ -..+.+...+
T Consensus        76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~-~-~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L  149 (258)
T PRK14241         76 PGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGL-K-LNG----VRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGL  149 (258)
T ss_pred             cccChHHHhcceEEEccccccCCCCcHHHHHHHHH-H-hcC----CCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccC
Confidence                2345678999999999999999977664311 1 000    012222 23333222222110 01 1457888999


Q ss_pred             CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec------
Q psy13765        176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS------  249 (606)
Q Consensus       176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~------  249 (606)
                      |+||||||.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||++++|+      
T Consensus       150 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~  227 (258)
T PRK14241        150 SGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGK  227 (258)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCC
Confidence            99999999999999999999999999999999999999999999964 689999999976 5778999999996      


Q ss_pred             CCcEEEEcChhHHH
Q psy13765        250 GGQCLYQGATDQLV  263 (606)
Q Consensus       250 ~G~~~~~G~~~~~~  263 (606)
                      +|++++.|+++++.
T Consensus       228 ~g~i~~~~~~~~~~  241 (258)
T PRK14241        228 PGRLVEIDDTEKIF  241 (258)
T ss_pred             CceEEecCCHHHHH
Confidence            79999999998774

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=100.00  E-value=2.4e-39  Score=332.54  Aligned_cols=225  Identities=25%  Similarity=0.377  Sum_probs=173.1

Q ss_pred             EEEEEeeEEEEecCCcc-cccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---
Q psy13765         28 EIKFKDLTYTVSTGLGF-KQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---  103 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~-~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---  103 (606)
                      .|+++||+++|..+... +.+.+++|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|.+...   
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~   82 (267)
T PRK15112          4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP-TSGELLIDDHPLHFGDY   82 (267)
T ss_pred             eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC-CCCEEEECCEECCCCch
Confidence            48999999998421000 01235799999999999999999999999999999999999876 59999999986532   


Q ss_pred             hhhcccEEEEccCCC--CCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc--cccCCCCCCCCch
Q psy13765        104 NAFRRVSCYIQQDDR--LQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV--MFLDEPTTSNPND  178 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~--l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~--~~~de~~~~~s~g  178 (606)
                      ...++.++|++|++.  +++.+|+.+.+... +.  .+.   .+..-+ .+++.   +++..-++  ...+.+...+|+|
T Consensus        83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~-~~--~~~---~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~~LS~G  153 (267)
T PRK15112         83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFP-LR--LNT---DLEPEQREKQII---ETLRQVGLLPDHASYYPHMLAPG  153 (267)
T ss_pred             hhHhccEEEEecCchhhcCcchhHHHHHHHH-HH--hcc---CCCHHHHHHHHH---HHHHHcCCChHHHhcCchhcCHH
Confidence            233467999999975  56777876665431 00  000   111111 22332   22222222  1356677889999


Q ss_pred             hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      ||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|+++ .+..+||++++|++|+++..|
T Consensus       154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~G~i~~~~  232 (267)
T PRK15112        154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQGEVVERG  232 (267)
T ss_pred             HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEecC
Confidence            999999999999999999999999999999999999999999875 899999999986 577889999999999999999


Q ss_pred             ChhHHH
Q psy13765        258 ATDQLV  263 (606)
Q Consensus       258 ~~~~~~  263 (606)
                      +++++.
T Consensus       233 ~~~~~~  238 (267)
T PRK15112        233 STADVL  238 (267)
T ss_pred             CHHHHh
Confidence            988764

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.5e-39  Score=330.02  Aligned_cols=222  Identities=26%  Similarity=0.346  Sum_probs=175.5

Q ss_pred             CceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--C--CCccEEEECCcc
Q psy13765         25 DRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS--N--GVTGQILTNGHS  100 (606)
Q Consensus        25 ~~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~--~--~~~G~I~~~G~~  100 (606)
                      +...++++|++++|+        ++.+|+|+|++|++||+++|+||||||||||+++|+|+.+  +  +.+|+|.++|++
T Consensus        10 ~~~~l~~~~l~~~~~--------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~   81 (260)
T PRK10744         10 APSKIQVRNLNFYYG--------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGEN   81 (260)
T ss_pred             CCceEEEEEEEEEeC--------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEE
Confidence            345699999999873        3469999999999999999999999999999999999975  2  258999999976


Q ss_pred             CC-----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCC-cc-cccCCCC
Q psy13765        101 RN-----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNP-RV-MFLDEPT  172 (606)
Q Consensus       101 ~~-----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~-~~-~~~de~~  172 (606)
                      ..     ...+++.++|++|++.+++ .|+.+.+.. +....     +.++.-+ ++++.-+.+.+.-. .+ -.+|++.
T Consensus        82 ~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~-~~~~~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~  154 (260)
T PRK10744         82 ILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAF-GVRLF-----EKLSRAEMDERVEWALTKAALWNEVKDKLHQSG  154 (260)
T ss_pred             ccccccchHHHhcceEEEecCCccCc-CcHHHHHhh-hHhhc-----CCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCC
Confidence            52     2345678999999998887 687665542 11100     0122211 23443333333211 01 1367889


Q ss_pred             CCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765        173 TSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ  252 (606)
Q Consensus       173 ~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~  252 (606)
                      ..+|+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+++|++++|++|+
T Consensus       155 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~  232 (260)
T PRK10744        155 YSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAARCSDYTAFMYLGE  232 (260)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence            99999999999999999999999999999999999999999999999964 789999999976 5678999999999999


Q ss_pred             EEEEcChhHHH
Q psy13765        253 CLYQGATDQLV  263 (606)
Q Consensus       253 ~~~~G~~~~~~  263 (606)
                      ++..|+++++.
T Consensus       233 i~~~g~~~~~~  243 (260)
T PRK10744        233 LIEFGNTDTIF  243 (260)
T ss_pred             EEEeCCHHHHH
Confidence            99999988764

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.8e-39  Score=324.16  Aligned_cols=215  Identities=24%  Similarity=0.429  Sum_probs=172.5

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhhc
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAFR  107 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~~  107 (606)
                      ++++||+++|+        ++  ..|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++... ...+
T Consensus         2 l~~~~l~~~~~--------~~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~   70 (232)
T PRK10771          2 LKLTDITWLYH--------HL--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP-ASGSLTLNGQDHTTTPPSR   70 (232)
T ss_pred             eEEEEEEEEEC--------Cc--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCeecCcCChhh
Confidence            68999999973        12  2389999999999999999999999999999999876 59999999986532 1234


Q ss_pred             ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc-cccCCCCCCCCchhhhHHHHH
Q psy13765        108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-MFLDEPTTSNPNDQKKRLSIA  186 (606)
Q Consensus       108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~krl~IA  186 (606)
                      +.++|++|++.+++.+|+.+.+.. +...  +.   ....-.++++.   +++..-.+ -..|.+...+|+|||||+.||
T Consensus        71 ~~i~~~~q~~~~~~~~tv~e~l~~-~~~~--~~---~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  141 (232)
T PRK10771         71 RPVSMLFQENNLFSHLTVAQNIGL-GLNP--GL---KLNAAQREKLH---AIARQMGIEDLLARLPGQLSGGQRQRVALA  141 (232)
T ss_pred             ccEEEEecccccccCCcHHHHHhc-cccc--cc---CCCHHHHHHHH---HHHHHcCcHHHHhCCcccCCHHHHHHHHHH
Confidence            679999999999999998776643 2211  00   01112233433   22322222 146888899999999999999


Q ss_pred             HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      +|++.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.||++++|++|++++.|+++++.+
T Consensus       142 ral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~~~  219 (232)
T PRK10771        142 RCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDELLS  219 (232)
T ss_pred             HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            9999999999999999999999999999999999764 899999999987 5678999999999999999999887653

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=2e-39  Score=330.58  Aligned_cols=223  Identities=26%  Similarity=0.421  Sum_probs=174.5

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-CC---CccEEEECCccC---
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS-NG---VTGQILTNGHSR---  101 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~-~~---~~G~I~~~G~~~---  101 (606)
                      ++++||+.++...    .+..++++||||++++||++||+|.|||||||+.++|.|+++ ++   .+|+|.++|++.   
T Consensus         2 L~v~nL~v~f~~~----~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l   77 (316)
T COG0444           2 LEVKNLSVSFPTD----AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSL   77 (316)
T ss_pred             ceEeeeEEEEecC----CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccC
Confidence            6899999998653    234679999999999999999999999999999999999987 32   579999999853   


Q ss_pred             Chh---hhc-ccEEEEccCC--CCCCCCcHHHHH-HHcCCccccCCccccCChHHHHHHHHHHHHhcC---Ccc-cccCC
Q psy13765        102 NIN---AFR-RVSCYIQQDD--RLQPLLTIENVM-SLLGLDESQNTRSSQLSGGQKKRLSIALELINN---PRV-MFLDE  170 (606)
Q Consensus       102 ~~~---~~~-~~~~yv~Q~~--~l~~~ltv~~~l-~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~---~~~-~~~de  170 (606)
                      +.+   ++| +.|+++||++  .|.|.+|+.+-+ +.+-. |..      .+ ..++....|.+++..   |+- -+++.
T Consensus        78 ~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~-h~~------~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~  149 (316)
T COG0444          78 SEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRL-HGK------GL-SKKEAKERAIELLELVGIPDPERRLKS  149 (316)
T ss_pred             CHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHH-hhc------ch-hhHHHHHHHHHHHHHcCCCCHHHHHhh
Confidence            322   233 5799999996  578888874322 22211 100      10 122222333444433   322 25666


Q ss_pred             CCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeec
Q psy13765        171 PTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLS  249 (606)
Q Consensus       171 ~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~  249 (606)
                      -.-.+||||||||.||.||+.+|++||.||||++||...+.+|+++|+++++ .|.|+|++|||+. .+.++||||++|.
T Consensus       150 YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMY  228 (316)
T COG0444         150 YPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMY  228 (316)
T ss_pred             CCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEE
Confidence            6777888888888899999999999999999999999999999999999987 5999999999987 5789999999999


Q ss_pred             CCcEEEEcChhHHHH
Q psy13765        250 GGQCLYQGATDQLVN  264 (606)
Q Consensus       250 ~G~~~~~G~~~~~~~  264 (606)
                      .|++++.|+++++..
T Consensus       229 aG~iVE~g~~~~i~~  243 (316)
T COG0444         229 AGRIVEEGPVEEIFK  243 (316)
T ss_pred             CcEEEEeCCHHHHhc
Confidence            999999999998754

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.8e-39  Score=335.70  Aligned_cols=221  Identities=22%  Similarity=0.350  Sum_probs=173.3

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC----
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN----  102 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~----  102 (606)
                      ..|+++||+++|+.+.   ...+.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|.+..    
T Consensus         5 ~~l~i~nl~~~~~~~~---~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~   80 (289)
T PRK13645          5 KDIILDNVSYTYAKKT---PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS-ETGQTIVGDYAIPANLK   80 (289)
T ss_pred             ceEEEEEEEEEeCCCC---ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEEcccccc
Confidence            3589999999974210   0013599999999999999999999999999999999999876 5999999997642    


Q ss_pred             ----hhhhcccEEEEccCCC--CCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc--cccCCCCC
Q psy13765        103 ----INAFRRVSCYIQQDDR--LQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV--MFLDEPTT  173 (606)
Q Consensus       103 ----~~~~~~~~~yv~Q~~~--l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~--~~~de~~~  173 (606)
                          ...+++.++|++|++.  +++ .|+.+.+.. +..   ..   +.+.-+ ++++   ..++..-++  -..|.+..
T Consensus        81 ~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~-~~~---~~---~~~~~~~~~~~---~~ll~~~~L~~~~~~~~~~  149 (289)
T PRK13645         81 KIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAF-GPV---NL---GENKQEAYKKV---PELLKLVQLPEDYVKRSPF  149 (289)
T ss_pred             ccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHH-HHH---Hc---CCCHHHHHHHH---HHHHHHcCCChhHhcCChh
Confidence                2345678999999973  333 477665542 111   00   112211 2233   233333233  14688899


Q ss_pred             CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765        174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQ  252 (606)
Q Consensus       174 ~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~  252 (606)
                      .+|+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.++||++++|++|+
T Consensus       150 ~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~G~  228 (289)
T PRK13645        150 ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGK  228 (289)
T ss_pred             hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCE
Confidence            99999999999999999999999999999999999999999999999764 899999999976 5778999999999999


Q ss_pred             EEEEcChhHHH
Q psy13765        253 CLYQGATDQLV  263 (606)
Q Consensus       253 ~~~~G~~~~~~  263 (606)
                      +++.|+++++.
T Consensus       229 i~~~g~~~~~~  239 (289)
T PRK13645        229 VISIGSPFEIF  239 (289)
T ss_pred             EEEeCCHHHHh
Confidence            99999988764

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.4e-39  Score=332.43  Aligned_cols=220  Identities=23%  Similarity=0.377  Sum_probs=175.1

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCC--ccEEEECCccCCh-
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGV--TGQILTNGHSRNI-  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~--~G~I~~~G~~~~~-  103 (606)
                      ..|+++|+++.++.      ..+++++|+|++|++||+++|+||||||||||+++|+|+.++..  +|+|.++|.+... 
T Consensus         4 ~~l~i~~l~~~~~~------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~   77 (282)
T PRK13640          4 NIVEFKHVSFTYPD------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAK   77 (282)
T ss_pred             ceEEEEEEEEEcCC------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcC
Confidence            35899999998732      23469999999999999999999999999999999999987632  3999999987542 


Q ss_pred             --hhhcccEEEEccCCC-CCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCch
Q psy13765        104 --NAFRRVSCYIQQDDR-LQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPND  178 (606)
Q Consensus       104 --~~~~~~~~yv~Q~~~-l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g  178 (606)
                        ...++.+||++|++. .++..|+.+.+.. +...      .+.+.-+ ++++.   +++..-++- .+|.+...+|+|
T Consensus        78 ~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~-~~~~------~~~~~~~~~~~~~---~~l~~~~L~~~~~~~~~~LS~G  147 (282)
T PRK13640         78 TVWDIREKVGIVFQNPDNQFVGATVGDDVAF-GLEN------RAVPRPEMIKIVR---DVLADVGMLDYIDSEPANLSGG  147 (282)
T ss_pred             CHHHHHhheEEEEECHHHhhccCCHHHHHHh-hHHh------CCCCHHHHHHHHH---HHHHHCCChhHhcCCcccCCHH
Confidence              345678999999974 5667888776642 2111      0122222 22332   223222222 468888999999


Q ss_pred             hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      ||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++. + ..||++++|++|++++.|
T Consensus       148 ~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~G~i~~~g  225 (282)
T PRK13640        148 QKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDDGKLLAQG  225 (282)
T ss_pred             HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEeC
Confidence            999999999999999999999999999999999999999999875 9999999999874 5 579999999999999999


Q ss_pred             ChhHHHH
Q psy13765        258 ATDQLVN  264 (606)
Q Consensus       258 ~~~~~~~  264 (606)
                      +++++..
T Consensus       226 ~~~~~~~  232 (282)
T PRK13640        226 SPVEIFS  232 (282)
T ss_pred             CHHHHhc
Confidence            9988753

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=3.4e-39  Score=332.06  Aligned_cols=221  Identities=21%  Similarity=0.358  Sum_probs=175.1

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-------CccEEEECCccC
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG-------VTGQILTNGHSR  101 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~-------~~G~I~~~G~~~  101 (606)
                      |+++|+++++        +++.+|+|+|++|++||+++|+||||||||||+|+|+|+.++.       .+|+|.++|.+.
T Consensus         2 l~~~nl~~~~--------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~   73 (272)
T PRK13547          2 LTADHLHVAR--------RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPL   73 (272)
T ss_pred             eEEEEEEEEE--------CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEc
Confidence            7899999987        2357999999999999999999999999999999999998763       289999999865


Q ss_pred             C---hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCc
Q psy13765        102 N---INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPN  177 (606)
Q Consensus       102 ~---~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~  177 (606)
                      .   ...+++.++|++|++.+++.+|+.+.+........  ...+..+.-.++++.   +++..-.+- .+|.+...||+
T Consensus        74 ~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LSg  148 (272)
T PRK13547         74 AAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHA--RRAGALTHRDGEIAW---QALALAGATALVGRDVTTLSG  148 (272)
T ss_pred             ccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccc--cccccCCHHHHHHHH---HHHHHcCcHhhhcCCcccCCH
Confidence            3   23456678999999876666888776644221110  001112211223332   222222222 46889999999


Q ss_pred             hhhhHHHHHHhhh---------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeee
Q psy13765        178 DQKKRLSIALELI---------NNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYL  247 (606)
Q Consensus       178 g~~krl~IA~aL~---------~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~  247 (606)
                      |||||+.||+||+         .+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.++||++++
T Consensus       149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~  227 (272)
T PRK13547        149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAM  227 (272)
T ss_pred             HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEE
Confidence            9999999999999         599999999999999999999999999999876 899999999986 57789999999


Q ss_pred             ecCCcEEEEcChhHHH
Q psy13765        248 LSGGQCLYQGATDQLV  263 (606)
Q Consensus       248 L~~G~~~~~G~~~~~~  263 (606)
                      |++|++++.|+++++.
T Consensus       228 l~~G~i~~~g~~~~~~  243 (272)
T PRK13547        228 LADGAIVAHGAPADVL  243 (272)
T ss_pred             EECCeEEEecCHHHHc
Confidence            9999999999987763

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=3.5e-39  Score=315.41  Aligned_cols=188  Identities=42%  Similarity=0.753  Sum_probs=156.2

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCccEEEECCccCChhhh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS-NGVTGQILTNGHSRNINAF  106 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~-~~~~G~I~~~G~~~~~~~~  106 (606)
                      .|+++|+++.|+.+    .+++++|+|+|+++++||+++|+||||||||||+++|+|+.. +..+|+|.++|++.. ..+
T Consensus         3 ~l~~~~l~~~~~~~----~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-~~~   77 (192)
T cd03232           3 VLTWKNLNYTVPVK----GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-KNF   77 (192)
T ss_pred             EEEEeeeEEEecCC----CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-HHh
Confidence            47899999998421    112569999999999999999999999999999999999853 236999999998765 456


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHH
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIA  186 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA  186 (606)
                      ++.++|++|++.+++.+|+.+.+.....       ..+||||||||+++|++|+.+                        
T Consensus        78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~-------~~~LSgGe~qrv~la~al~~~------------------------  126 (192)
T cd03232          78 QRSTGYVEQQDVHSPNLTVREALRFSAL-------LRGLSVEQRKRLTIGVELAAK------------------------  126 (192)
T ss_pred             hhceEEecccCccccCCcHHHHHHHHHH-------HhcCCHHHhHHHHHHHHHhcC------------------------
Confidence            6789999999999999999777653110       016777777777755555555                        


Q ss_pred             HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC-CcEEEEc
Q psy13765        187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG-GQCLYQG  257 (606)
Q Consensus       187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~-G~~~~~G  257 (606)
                            |++++|||||+|||+.++..+.+.|++++++|+|||++||+++..+.+.||++++|++ |++++.|
T Consensus       127 ------p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g  192 (192)
T cd03232         127 ------PSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG  192 (192)
T ss_pred             ------CcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence                  9999999999999999999999999999877999999999987446789999999998 9999865

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=100.00  E-value=3.3e-39  Score=310.41  Aligned_cols=171  Identities=29%  Similarity=0.536  Sum_probs=149.4

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh--hhh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--NAF  106 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--~~~  106 (606)
                      ++++|++++++        .+++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.+||++...  ..+
T Consensus         1 l~~~~l~~~~~--------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~   71 (173)
T cd03230           1 IEVRNLSKRYG--------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP-DSGEIKVLGKDIKKEPEEV   71 (173)
T ss_pred             CEEEEEEEEEC--------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEcccchHhh
Confidence            46899999873        24699999999999999999999999999999999999876 59999999986532  345


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHH
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIA  186 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA  186 (606)
                      ++.++|++|++.+++..|+.+.+.              ||||||||++||++|+.+                        
T Consensus        72 ~~~i~~~~q~~~~~~~~tv~~~~~--------------LS~G~~qrv~laral~~~------------------------  113 (173)
T cd03230          72 KRRIGYLPEEPSLYENLTVRENLK--------------LSGGMKQRLALAQALLHD------------------------  113 (173)
T ss_pred             hccEEEEecCCccccCCcHHHHhh--------------cCHHHHHHHHHHHHHHcC------------------------
Confidence            678999999999999889877653              888888888866666666                        


Q ss_pred             HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765        187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC  253 (606)
Q Consensus       187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~  253 (606)
                            |++++|||||+|||+.++..+.+.|++++++|.|+|+++|++. .+.+.+|++++|++|++
T Consensus       114 ------p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i  173 (173)
T cd03230         114 ------PELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNGRI  173 (173)
T ss_pred             ------CCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence                  9999999999999999999999999999888999999999976 57779999999999874

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.3e-39  Score=326.67  Aligned_cols=220  Identities=22%  Similarity=0.285  Sum_probs=173.5

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCccEEEECCccCC---
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN--GVTGQILTNGHSRN---  102 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~--~~~G~I~~~G~~~~---  102 (606)
                      .++++|+++.|+        ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++  +.+|+|.++|++..   
T Consensus         2 ~~~~~~l~~~~~--------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~   73 (246)
T PRK14269          2 IAKTTNLNLFYG--------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQD   73 (246)
T ss_pred             ceeeeeeEEEEC--------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCC
Confidence            578999999973        35799999999999999999999999999999999998642  36899999998653   


Q ss_pred             hhhhcccEEEEccCCCCCCCCcHHHHHHHc-CCccccCCccccCChHHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCchh
Q psy13765        103 INAFRRVSCYIQQDDRLQPLLTIENVMSLL-GLDESQNTRSSQLSGGQKKRLSIALELINN-PRV-MFLDEPTTSNPNDQ  179 (606)
Q Consensus       103 ~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~-gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~-~~~-~~~de~~~~~s~g~  179 (606)
                      ...+++.++|++|++.+++ .|+.+.+... .+....+     -....+.++.-+.+.+.- +.+ -..|++...+|+||
T Consensus        74 ~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~  147 (246)
T PRK14269         74 VVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIK-----NKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQ  147 (246)
T ss_pred             HHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCccc-----ChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHH
Confidence            2355678999999998887 5886655431 1110000     001123333322222221 111 14678889999999


Q ss_pred             hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765        180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT  259 (606)
Q Consensus       180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~  259 (606)
                      |||+.|||||+++|++++|||||+|||+.++..+.+.|+++++ |+|+|++||+++ .+.+.+|++++|++|++++.|++
T Consensus       148 ~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~  225 (246)
T PRK14269        148 QQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHLGELIEFGES  225 (246)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEECCEEEEECCH
Confidence            9999999999999999999999999999999999999999865 899999999976 47789999999999999999998


Q ss_pred             hHHH
Q psy13765        260 DQLV  263 (606)
Q Consensus       260 ~~~~  263 (606)
                      +++.
T Consensus       226 ~~~~  229 (246)
T PRK14269        226 KEFF  229 (246)
T ss_pred             HHHH
Confidence            8764

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=100.00  E-value=5e-39  Score=327.72  Aligned_cols=217  Identities=23%  Similarity=0.332  Sum_probs=170.4

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CccEEEECCccCChh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG---VTGQILTNGHSRNIN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~---~~G~I~~~G~~~~~~  104 (606)
                      .|+++||++++         ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++.   .+|+|.++|++.+..
T Consensus         4 ~l~~~~l~~~~---------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~   74 (254)
T PRK10418          4 QIELRNIALQA---------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC   74 (254)
T ss_pred             EEEEeCeEEEe---------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc
Confidence            68999999986         146999999999999999999999999999999999997651   589999999876433


Q ss_pred             hh-cccEEEEccCCC--CCCCCcHHHHHHH-cCCccccCCccccCChHHHHHHHHHHHHhcCCcc-cccCCCCCCCCchh
Q psy13765        105 AF-RRVSCYIQQDDR--LQPLLTIENVMSL-LGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-MFLDEPTTSNPNDQ  179 (606)
Q Consensus       105 ~~-~~~~~yv~Q~~~--l~~~ltv~~~l~~-~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~  179 (606)
                      .. ++.++||+|++.  +.+..|+.+.+.. +...   +     ... +.+++.-+.+.+.-.+. -++|++...+|+||
T Consensus        75 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~-~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq  145 (254)
T PRK10418         75 ALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL---G-----KPA-DDATLTAALEAVGLENAARVLKLYPFEMSGGM  145 (254)
T ss_pred             ccccceEEEEecCCccccCccccHHHHHHHHHHHc---C-----CCh-HHHHHHHHHHHcCCCChhhhhhcCCcccCHHH
Confidence            33 357999999974  4556676544322 1100   0     011 12333222222221111 14678889999999


Q ss_pred             hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      |||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+.+.||++++|++|++++.|+
T Consensus       146 ~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~  224 (254)
T PRK10418        146 LQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSHGRIVEQGD  224 (254)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEECCEEEEecC
Confidence            99999999999999999999999999999999999999999764 899999999977 4668999999999999999999


Q ss_pred             hhHHH
Q psy13765        259 TDQLV  263 (606)
Q Consensus       259 ~~~~~  263 (606)
                      ++++.
T Consensus       225 ~~~~~  229 (254)
T PRK10418        225 VETLF  229 (254)
T ss_pred             HHHHh
Confidence            88764

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=100.00  E-value=4.1e-39  Score=323.97  Aligned_cols=216  Identities=24%  Similarity=0.405  Sum_probs=170.5

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhhc
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAFR  107 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~~  107 (606)
                      |+++|++++++        .+.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++... ...+
T Consensus         1 l~~~~l~~~~~--------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~-~~G~i~~~g~~~~~~~~~~   71 (232)
T cd03300           1 IELENVSKFYG--------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP-TSGEILLDGKDITNLPPHK   71 (232)
T ss_pred             CEEEeEEEEeC--------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEEcCcCChhh
Confidence            46899999873        35799999999999999999999999999999999999876 58999999986532 2235


Q ss_pred             ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCCh-HHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHH
Q psy13765        108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSG-GQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIA  186 (606)
Q Consensus       108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSg-GqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA  186 (606)
                      +.++|++|++.+++.+|+.+.+... ..   ..   ..+. -.++++.-+.+.+.-.  -.++.....+|+|||||+.||
T Consensus        72 ~~i~~~~q~~~~~~~~t~~~nl~~~-~~---~~---~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~G~~qrl~la  142 (232)
T cd03300          72 RPVNTVFQNYALFPHLTVFENIAFG-LR---LK---KLPKAEIKERVAEALDLVQLE--GYANRKPSQLSGGQQQRVAIA  142 (232)
T ss_pred             cceEEEecccccCCCCcHHHHHHHH-HH---hc---CCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHH
Confidence            6799999999999888986655421 10   00   0111 1122332222222111  135667778888888888999


Q ss_pred             HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765        187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                      +||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+.+++.
T Consensus       143 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~~~  219 (232)
T cd03300         143 RALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEEIY  219 (232)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHHH
Confidence            9999999999999999999999999999999999875 899999999976 577899999999999999999887664

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.5e-39  Score=326.92  Aligned_cols=220  Identities=24%  Similarity=0.346  Sum_probs=174.2

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--C--CCccEEEECCccCC-
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS--N--GVTGQILTNGHSRN-  102 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~--~--~~~G~I~~~G~~~~-  102 (606)
                      .|+++|++++|+        ++.+|+|+|++|++||+++|+||||||||||+++|+|+.+  +  +.+|+|.++|++.. 
T Consensus         4 ~l~~~nl~~~~~--------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~   75 (252)
T PRK14256          4 KVKLEQLNVHFG--------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYD   75 (252)
T ss_pred             EEEEEEEEEEeC--------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccc
Confidence            489999999873        3569999999999999999999999999999999999975  3  14899999998653 


Q ss_pred             ----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCc-c-cccCCCCCCC
Q psy13765        103 ----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPR-V-MFLDEPTTSN  175 (606)
Q Consensus       103 ----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~-~-~~~de~~~~~  175 (606)
                          ...+++.++|++|++.+++.+|+.+.+.. +....     +..+..+ ++++.-+...+.-.+ + -.+|.+...+
T Consensus        76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~-~~~~~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L  149 (252)
T PRK14256         76 RGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIA-GYKLN-----GRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMEL  149 (252)
T ss_pred             ccCChHHhhccEEEEecCCCCCCcCcHHHHHHh-HHHhc-----CCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcC
Confidence                23457789999999999998998766542 11110     0011111 233322222221100 0 1357788999


Q ss_pred             CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765        176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY  255 (606)
Q Consensus       176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~  255 (606)
                      |+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.++||++++|++|+++.
T Consensus       150 S~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~  227 (252)
T PRK14256        150 SGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYMGDLVE  227 (252)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999999976 689999999976 5678999999999999999


Q ss_pred             EcChhHHH
Q psy13765        256 QGATDQLV  263 (606)
Q Consensus       256 ~G~~~~~~  263 (606)
                      .|+++++.
T Consensus       228 ~~~~~~~~  235 (252)
T PRK14256        228 CGETKKIF  235 (252)
T ss_pred             eCCHHHHH
Confidence            99988764

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.1e-39  Score=330.43  Aligned_cols=221  Identities=23%  Similarity=0.311  Sum_probs=174.1

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccC
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSR  101 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~  101 (606)
                      ...|+++||+++|+        ++.+|+|+|++|++||+++|+||||||||||+++|+|+.++    +.+|+|.++|++.
T Consensus        11 ~~~l~i~nl~~~~~--------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i   82 (269)
T PRK14259         11 NIIISLQNVTISYG--------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDL   82 (269)
T ss_pred             CceEEEEeEEEEEC--------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence            45799999999873        35699999999999999999999999999999999998752    3589999999864


Q ss_pred             C-----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCC-cc-cccCCCCCC
Q psy13765        102 N-----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNP-RV-MFLDEPTTS  174 (606)
Q Consensus       102 ~-----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~-~~-~~~de~~~~  174 (606)
                      .     ...+++.++|++|++.+++. |+.+.+... ...  .    ....-.++++.-+.+.+.-. .+ -.+|.+...
T Consensus        83 ~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~-~~~--~----~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~  154 (269)
T PRK14259         83 YDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFG-ARI--N----GYTGDMDELVERSLRKAAVWDECKDKLNESGYS  154 (269)
T ss_pred             ccccCCHHHHhhceEEEccCCccchh-hHHHHHhhh-hhh--c----CCcHHHHHHHHHHHHHhCCcchhhhhhCCCccc
Confidence            2     23456789999999998884 887766432 110  0    01111122322112222110 00 146888999


Q ss_pred             CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC----
Q psy13765        175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG----  250 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~----  250 (606)
                      +|+|||||+.||+||+.+|++|+|||||+|||+.++..+.++|+++++ ++|||++||++. .+.++||++++|++    
T Consensus       155 LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~  232 (269)
T PRK14259        155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVE  232 (269)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEeccccc
Confidence            999999999999999999999999999999999999999999999965 799999999986 57799999999986    


Q ss_pred             -------CcEEEEcChhHHHH
Q psy13765        251 -------GQCLYQGATDQLVN  264 (606)
Q Consensus       251 -------G~~~~~G~~~~~~~  264 (606)
                             |++++.|+++++..
T Consensus       233 ~~~~g~~g~~~~~~~~~~~~~  253 (269)
T PRK14259        233 GGSGGKVGYLVEFNETKKIFN  253 (269)
T ss_pred             cccccccceEEEeCCHHHHHh
Confidence                   67899999988754

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.8e-39  Score=329.18  Aligned_cols=221  Identities=23%  Similarity=0.325  Sum_probs=175.0

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccCC
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSRN  102 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~~  102 (606)
                      ..|+++||++.++        ++.+|+|+|++|++||+++|+||||||||||+++|+|+.++    +.+|+|.++|++..
T Consensus        18 ~~l~~~nl~~~~~--------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~   89 (267)
T PRK14235         18 IKMRARDVSVFYG--------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIY   89 (267)
T ss_pred             ceEEEEeEEEEEC--------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECc
Confidence            4799999999873        35699999999999999999999999999999999999764    25899999998653


Q ss_pred             -----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCcc--cccCCCCCC
Q psy13765        103 -----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRV--MFLDEPTTS  174 (606)
Q Consensus       103 -----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~--~~~de~~~~  174 (606)
                           ...+++.++|++|++.+++. |+.+.+.. +.. ..+.   ..+.. .++++.-+.+.+.-.+.  -.+|++...
T Consensus        90 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~-~~~-~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~  163 (267)
T PRK14235         90 DPRLDVVELRARVGMVFQKPNPFPK-SIYENVAY-GPR-IHGL---ARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTG  163 (267)
T ss_pred             ccccchHHHhhceEEEecCCCCCCC-cHHHHHHH-HHH-hccc---ccchHHHHHHHHHHHHHcCCchhhhHHhhCCccc
Confidence                 23456789999999988875 88665542 211 0000   00111 13333323333222111  145788999


Q ss_pred             CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765        175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL  254 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~  254 (606)
                      +|+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.||++++|++|+++
T Consensus       164 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~G~i~  241 (267)
T PRK14235        164 LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHLGNLV  241 (267)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEECCEEE
Confidence            999999999999999999999999999999999999999999999976 789999999977 577899999999999999


Q ss_pred             EEcChhHHH
Q psy13765        255 YQGATDQLV  263 (606)
Q Consensus       255 ~~G~~~~~~  263 (606)
                      ..|+++++.
T Consensus       242 ~~g~~~~~~  250 (267)
T PRK14235        242 EVGDTEKMF  250 (267)
T ss_pred             EeCCHHHHH
Confidence            999988764

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=100.00  E-value=4.1e-39  Score=324.74  Aligned_cols=217  Identities=25%  Similarity=0.432  Sum_probs=169.3

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INA  105 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~  105 (606)
                      ++++|+++.++.      +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..   ...
T Consensus         1 i~~~~l~~~~~~------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~   73 (237)
T cd03252           1 ITFEHVRFRYKP------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP-ENGRVLVDGHDLALADPAW   73 (237)
T ss_pred             CEEEEEEEecCC------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCCEEEECCeehHhcCHHH
Confidence            468999998732      235699999999999999999999999999999999999876 5999999997642   234


Q ss_pred             hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHH--HHHHhcC-C-cc-cccCCCCCCCCchhh
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSI--ALELINN-P-RV-MFLDEPTTSNPNDQK  180 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~i--a~~L~~~-~-~~-~~~de~~~~~s~g~~  180 (606)
                      +++.++|++|++.+++ .|+.+.+... ...   .   . ..........  +.+++.. | .+ -.++.+...||+|||
T Consensus        74 ~~~~i~~~~q~~~~~~-~tv~~nl~~~-~~~---~---~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~  144 (237)
T cd03252          74 LRRQVGVVLQENVLFN-RSIRDNIALA-DPG---M---S-MERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQR  144 (237)
T ss_pred             HhhcEEEEcCCchhcc-chHHHHhhcc-CCC---C---C-HHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHH
Confidence            5678999999998775 5887766431 110   0   0 0010111110  1122211 1 01 135778899999999


Q ss_pred             hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765        181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD  260 (606)
Q Consensus       181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~  260 (606)
                      |||.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|+++. + ..||++++|++|++++.|+++
T Consensus       145 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~~~~~  221 (237)
T cd03252         145 QRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLST-V-KNADRIIVMEKGRIVEQGSHD  221 (237)
T ss_pred             HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEEcCHH
Confidence            999999999999999999999999999999999999999974 8999999999874 5 569999999999999999988


Q ss_pred             HHHH
Q psy13765        261 QLVN  264 (606)
Q Consensus       261 ~~~~  264 (606)
                      ++.+
T Consensus       222 ~~~~  225 (237)
T cd03252         222 ELLA  225 (237)
T ss_pred             HHHh
Confidence            7654

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.1e-39  Score=343.43  Aligned_cols=208  Identities=22%  Similarity=0.386  Sum_probs=169.9

Q ss_pred             eeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-------hh
Q psy13765         33 DLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-------NA  105 (606)
Q Consensus        33 nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-------~~  105 (606)
                      ||+++|.        ++. + |+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++...       ..
T Consensus         4 ~l~~~~~--------~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p-~~G~I~~~g~~i~~~~~~~~~~~   72 (354)
T TIGR02142         4 RFSKRLG--------DFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP-DEGEIVLNGRTLFDSRKGIFLPP   72 (354)
T ss_pred             EEEEEEC--------CEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECccCccccccch
Confidence            7777762        233 4 99999999999999999999999999999999876 59999999986531       23


Q ss_pred             hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHH
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRL  183 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl  183 (606)
                      .++.++|++|++.+++.+|+.+.+.. ++..        .+.. .++|+.   +++..-.+- .+|.+...||||||||+
T Consensus        73 ~~~~i~~v~q~~~l~~~~tv~enl~~-~~~~--------~~~~~~~~~~~---~~l~~~gL~~~~~~~~~~LSgGqkqRv  140 (354)
T TIGR02142        73 EKRRIGYVFQEARLFPHLSVRGNLRY-GMKR--------ARPSERRISFE---RVIELLGIGHLLGRLPGRLSGGEKQRV  140 (354)
T ss_pred             hhCCeEEEecCCccCCCCcHHHHHHH-Hhhc--------cChhHHHHHHH---HHHHHcCChhHhcCChhhCCHHHHHHH
Confidence            46789999999999999999776643 2211        0111 233333   333332332 56888899999999999


Q ss_pred             HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765        184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL  262 (606)
Q Consensus       184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~  262 (606)
                      .||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++..++|++++|++|+++..|+++++
T Consensus       141 alAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~  219 (354)
T TIGR02142       141 AIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEV  219 (354)
T ss_pred             HHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHH
Confidence            9999999999999999999999999999999999999876 899999999987 57789999999999999999999887


Q ss_pred             HH
Q psy13765        263 VN  264 (606)
Q Consensus       263 ~~  264 (606)
                      ..
T Consensus       220 ~~  221 (354)
T TIGR02142       220 WA  221 (354)
T ss_pred             hc
Confidence            53

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.7e-39  Score=324.66  Aligned_cols=215  Identities=24%  Similarity=0.402  Sum_probs=175.0

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhhc
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAFR  107 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~~  107 (606)
                      ++++|++++|+        .+++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+... ...+
T Consensus         1 i~i~~l~~~~~--------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~i~i~g~~~~~~~~~~   71 (237)
T TIGR00968         1 IEIANISKRFG--------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP-DSGRIRLNGQDATRVHARD   71 (237)
T ss_pred             CEEEEEEEEEC--------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEEcCcCChhh
Confidence            46899999873        35799999999999999999999999999999999999876 59999999986532 2335


Q ss_pred             ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCcc-cccCCCCCCCCchhhhHHHH
Q psy13765        108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRV-MFLDEPTTSNPNDQKKRLSI  185 (606)
Q Consensus       108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~krl~I  185 (606)
                      +.++|++|++.+++..|+.+.+.. +..   ..   ..+.- .++++   .+++..-++ -..|.+...+|+||+||+.|
T Consensus        72 ~~i~~~~q~~~~~~~~t~~enl~~-~~~---~~---~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~lS~G~~qrl~l  141 (237)
T TIGR00968        72 RKIGFVFQHYALFKHLTVRDNIAF-GLE---IR---KHPKAKIKARV---EELLELVQLEGLGDRYPNQLSGGQRQRVAL  141 (237)
T ss_pred             cCEEEEecChhhccCCcHHHHHHh-HHH---hc---CCCHHHHHHHH---HHHHHHcCCHhHhhCChhhCCHHHHHHHHH
Confidence            679999999999998898776643 211   00   11221 12222   223332233 25678889999999999999


Q ss_pred             HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765        186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                      |++|+++|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|++|++++.|+.+++.
T Consensus       142 aral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~  219 (237)
T TIGR00968       142 ARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVY  219 (237)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHHHH
Confidence            99999999999999999999999999999999999876 899999999986 577899999999999999999988774

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.6e-39  Score=327.74  Aligned_cols=220  Identities=24%  Similarity=0.314  Sum_probs=174.3

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CC--CccEEEECCccCC
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS--NG--VTGQILTNGHSRN  102 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~--~~--~~G~I~~~G~~~~  102 (606)
                      ..|+++|+++.|+        ++.+|+|+|++|++||+++|+||||||||||+++|+|+.+  +.  .+|+|.++|++..
T Consensus        11 ~~l~i~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~   82 (259)
T PRK14274         11 EVYQINGMNLWYG--------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNIL   82 (259)
T ss_pred             ceEEEeeEEEEEC--------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcc
Confidence            3699999999873        3569999999999999999999999999999999999875  22  4899999998653


Q ss_pred             -----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcC-Ccc-cccCCCCCC
Q psy13765        103 -----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINN-PRV-MFLDEPTTS  174 (606)
Q Consensus       103 -----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~-~~~-~~~de~~~~  174 (606)
                           ....++.++|++|++.+++. |+.+.+.. +... .    +..+..+ ++++.-+.+.+.- +.+ -.++.+...
T Consensus        83 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~-~~~~-~----~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~  155 (259)
T PRK14274         83 KGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAY-GPRI-H----GTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALS  155 (259)
T ss_pred             ccccCHHHHhhceEEEecCCccccc-CHHHHHHh-HHHh-c----CCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCccc
Confidence                 23456789999999988885 87665542 1110 0    0012112 2333222222211 111 246889999


Q ss_pred             CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765        175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL  254 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~  254 (606)
                      +|+|||||+.||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|+++|+++ .+.+.||++++|++|+++
T Consensus       156 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~  233 (259)
T PRK14274        156 LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYMGELV  233 (259)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEE
Confidence            999999999999999999999999999999999999999999999965 799999999986 577899999999999999


Q ss_pred             EEcChhHHH
Q psy13765        255 YQGATDQLV  263 (606)
Q Consensus       255 ~~G~~~~~~  263 (606)
                      ..|+++++.
T Consensus       234 ~~g~~~~~~  242 (259)
T PRK14274        234 ECNDTNKMF  242 (259)
T ss_pred             EECCHHHHh
Confidence            999998864

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=100.00  E-value=6.8e-39  Score=327.44  Aligned_cols=216  Identities=21%  Similarity=0.358  Sum_probs=170.6

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCcc-----CC
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-----RN  102 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~-----~~  102 (606)
                      .|+++|+++.++        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++     ..
T Consensus         6 ~l~~~~l~~~~~--------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~i~   76 (258)
T PRK11701          6 LLSVRGLTKLYG--------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP-DAGEVHYRMRDGQLRDLY   76 (258)
T ss_pred             eEEEeeeEEEcC--------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCEEEECCccccccccc
Confidence            589999999873        35699999999999999999999999999999999999876 59999999986     32


Q ss_pred             ---hhh----hcccEEEEccCCC--CCCCCcHHHHH-HHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc--cccC
Q psy13765        103 ---INA----FRRVSCYIQQDDR--LQPLLTIENVM-SLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV--MFLD  169 (606)
Q Consensus       103 ---~~~----~~~~~~yv~Q~~~--l~~~ltv~~~l-~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~--~~~d  169 (606)
                         ...    .++.++|++|++.  +++.+|+.+.+ ..+......       .-++ ++++   .+++..-++  -.+|
T Consensus        77 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~---~~~l~~~~l~~~~~~  146 (258)
T PRK11701         77 ALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGAR-------HYGDIRATA---GDWLERVEIDAARID  146 (258)
T ss_pred             cCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccC-------cHHHHHHHH---HHHHHHcCCChhHHh
Confidence               111    2456999999974  56666765333 211100000       1112 2222   233333233  1467


Q ss_pred             CCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeee
Q psy13765        170 EPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLL  248 (606)
Q Consensus       170 e~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L  248 (606)
                      ++...+|+|||||+.|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. .+.+.||++++|
T Consensus       147 ~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l  225 (258)
T PRK11701        147 DLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVM  225 (258)
T ss_pred             CCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEE
Confidence            889999999999999999999999999999999999999999999999999775 899999999976 466789999999


Q ss_pred             cCCcEEEEcChhHHH
Q psy13765        249 SGGQCLYQGATDQLV  263 (606)
Q Consensus       249 ~~G~~~~~G~~~~~~  263 (606)
                      ++|++++.|+++++.
T Consensus       226 ~~g~i~~~~~~~~~~  240 (258)
T PRK11701        226 KQGRVVESGLTDQVL  240 (258)
T ss_pred             ECCEEEEeCCHHHHh
Confidence            999999999988764

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.2e-39  Score=301.63  Aligned_cols=191  Identities=31%  Similarity=0.489  Sum_probs=160.5

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----  103 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----  103 (606)
                      .|+++++++++..+    .++..||++|++.|++||.+||+|||||||||||-+++|+..+ .+|+|.+.|++...    
T Consensus         6 ii~~~~l~ktvg~~----~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~-ssGeV~l~G~~L~~ldEd   80 (228)
T COG4181           6 IIEVHHLSKTVGQG----EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP-SSGEVRLLGQPLHKLDED   80 (228)
T ss_pred             eeehhhhhhhhcCC----CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC-CCceEEEcCcchhhcCHH
Confidence            68899999998654    3567899999999999999999999999999999999999876 59999999986431    


Q ss_pred             --hhhc-ccEEEEccCCCCCCCCcH----------------------HHHHHHcCCccccCCccccCChHHHHHHHHHHH
Q psy13765        104 --NAFR-RVSCYIQQDDRLQPLLTI----------------------ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALE  158 (606)
Q Consensus       104 --~~~~-~~~~yv~Q~~~l~~~ltv----------------------~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~  158 (606)
                        ..+| +.+|+|||...+.|++|.                      .+.++.+||.+..+.++++|||||+|||+||||
T Consensus        81 ~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARA  160 (228)
T COG4181          81 ARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARA  160 (228)
T ss_pred             HHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHH
Confidence              2343 679999999999999985                      344566677776666777777777777765555


Q ss_pred             HhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchH
Q psy13765        159 LINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSAT  237 (606)
Q Consensus       159 L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~  237 (606)
                      +.                              ..|+|||.||||-+||..+..+|.++|-.+.++ |.|.|++||||.  
T Consensus       161 fa------------------------------~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--  208 (228)
T COG4181         161 FA------------------------------GRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--  208 (228)
T ss_pred             hc------------------------------CCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--
Confidence            55                              449999999999999999999999999999764 999999999976  


Q ss_pred             HHhhcceeeeecCCcEEE
Q psy13765        238 LFQMFDQVYLLSGGQCLY  255 (606)
Q Consensus       238 i~~~~D~v~~L~~G~~~~  255 (606)
                      +...|||.+-|.+|+++.
T Consensus       209 LA~Rc~R~~r~~~G~l~~  226 (228)
T COG4181         209 LAARCDRQLRLRSGRLVE  226 (228)
T ss_pred             HHHhhhheeeeecceecc
Confidence            567899999999999874

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=100.00  E-value=5e-39  Score=319.17  Aligned_cols=209  Identities=24%  Similarity=0.399  Sum_probs=167.7

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhhc
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAFR  107 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~~  107 (606)
                      ++++||++.++          ..++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++... ...+
T Consensus         1 ~~~~~l~~~~~----------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~   69 (213)
T TIGR01277         1 LALDKVRYEYE----------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP-ASGSIKVNDQSHTGLAPYQ   69 (213)
T ss_pred             CeEEeeeEEeC----------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEEcccCChhc
Confidence            46899999862          246899999999999999999999999999999999876 59999999986532 2356


Q ss_pred             ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc-cccCCCCCCCCchhhhHHHHH
Q psy13765        108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-MFLDEPTTSNPNDQKKRLSIA  186 (606)
Q Consensus       108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~krl~IA  186 (606)
                      +.++||+|++.+++.+|+.+.+... ......     ...-.++++.-+.+.+   ++ -..|.+...+|+|||||+.||
T Consensus        70 ~~i~~v~q~~~~~~~~t~~en~~~~-~~~~~~-----~~~~~~~~~~~~l~~~---~l~~~~~~~~~~LS~G~~qrl~la  140 (213)
T TIGR01277        70 RPVSMLFQENNLFAHLTVRQNIGLG-LHPGLK-----LNAEQQEKVVDAAQQV---GIADYLDRLPEQLSGGQRQRVALA  140 (213)
T ss_pred             cceEEEeccCccCCCCcHHHHHHhH-hhccCC-----ccHHHHHHHHHHHHHc---CcHHHhhCCcccCCHHHHHHHHHH
Confidence            7799999999999988986655421 111000     0011234443222222   22 146888899999999999999


Q ss_pred             HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      +||+.+|++++|||||+|||+.++..+.++|++++++ |.|||+++|++. .+.+.||++++|++|+++..|+
T Consensus       141 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~  212 (213)
T TIGR01277       141 RCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD  212 (213)
T ss_pred             HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence            9999999999999999999999999999999999875 899999999976 5678999999999999998875

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.4e-39  Score=325.80  Aligned_cols=218  Identities=23%  Similarity=0.319  Sum_probs=172.4

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CC--CccEEEECCccCC-
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS--NG--VTGQILTNGHSRN-  102 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~--~~--~~G~I~~~G~~~~-  102 (606)
                      .++++||+++|+        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+  +.  .+|+|.++|++.. 
T Consensus         5 ~l~~~~l~~~~~--------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~   76 (252)
T PRK14239          5 ILQVSDLSVYYN--------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYS   76 (252)
T ss_pred             eEEEEeeEEEEC--------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcC
Confidence            589999999873        3569999999999999999999999999999999999843  32  4899999998652 


Q ss_pred             ----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCC-hH-HHHHHHHHHHHhcC-Ccc-cccCCCCCC
Q psy13765        103 ----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLS-GG-QKKRLSIALELINN-PRV-MFLDEPTTS  174 (606)
Q Consensus       103 ----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lS-gG-qrqRv~ia~~L~~~-~~~-~~~de~~~~  174 (606)
                          ...+++.++||+|++.+++ .|+.+.+... ...      .+.. .. .++++.-+.+.+.- +.+ -.+|.+...
T Consensus        77 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~-~~~------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~  148 (252)
T PRK14239         77 PRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYG-LRL------KGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALG  148 (252)
T ss_pred             cccchHhhhhcEEEEecCCccCc-CcHHHHHHHH-HHH------cCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCccc
Confidence                1245678999999998887 7886655431 110      0111 11 22333322222211 111 146788999


Q ss_pred             CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765        175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL  254 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~  254 (606)
                      +|+|||||+.||+||+.+|++|+|||||+|||+.++..+.++|+++++ ++|||++||+++ .+.+.||++++|++|+++
T Consensus       149 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~  226 (252)
T PRK14239        149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLDGDLI  226 (252)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEECCEEE
Confidence            999999999999999999999999999999999999999999999965 689999999976 577899999999999999


Q ss_pred             EEcChhHHH
Q psy13765        255 YQGATDQLV  263 (606)
Q Consensus       255 ~~G~~~~~~  263 (606)
                      +.|+++++.
T Consensus       227 ~~g~~~~~~  235 (252)
T PRK14239        227 EYNDTKQMF  235 (252)
T ss_pred             EeCCHHHHH
Confidence            999998874

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.6e-39  Score=328.93  Aligned_cols=220  Identities=23%  Similarity=0.302  Sum_probs=172.0

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--C--CCccEEEECCccCC
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS--N--GVTGQILTNGHSRN  102 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~--~--~~~G~I~~~G~~~~  102 (606)
                      ..++++|++++|+        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+  +  +.+|+|.++|++..
T Consensus        20 ~~l~~~~l~~~~~--------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~   91 (268)
T PRK14248         20 HILEVKDLSIYYG--------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNIL   91 (268)
T ss_pred             ceEEEEEEEEEeC--------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcc
Confidence            4689999999873        3579999999999999999999999999999999999753  1  25899999998653


Q ss_pred             h-----hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhc-CCcc-cccCCCCCC
Q psy13765        103 I-----NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELIN-NPRV-MFLDEPTTS  174 (606)
Q Consensus       103 ~-----~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~-~~~~-~~~de~~~~  174 (606)
                      .     ..+++.++|++|++.+++. |+.+.+.. ++... .    ..... .++++.-+..... ...+ -.+|.+...
T Consensus        92 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~-~~~~~-~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~  164 (268)
T PRK14248         92 DSNINVVNLRREIGMVFQKPNPFPK-SIYNNITH-ALKYA-G----ERRKSVLDEIVEESLTKAALWDEVKDRLHSSALS  164 (268)
T ss_pred             cccccHHHHhccEEEEecCCccCcc-cHHHHHHH-HHHhc-C----CCcHHHHHHHHHHHHHHcCCCcchHHHHhcCccc
Confidence            1     2456789999999988885 77655432 11100 0    00111 1233322222111 1111 145788999


Q ss_pred             CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765        175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL  254 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~  254 (606)
                      +|+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|++. .+.++||++++|++|+++
T Consensus       165 LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~  242 (268)
T PRK14248        165 LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFLNGDLV  242 (268)
T ss_pred             CCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEECCEEE
Confidence            999999999999999999999999999999999999999999999965 689999999976 477899999999999999


Q ss_pred             EEcChhHHH
Q psy13765        255 YQGATDQLV  263 (606)
Q Consensus       255 ~~G~~~~~~  263 (606)
                      +.|+++++.
T Consensus       243 ~~~~~~~~~  251 (268)
T PRK14248        243 EYDQTEQIF  251 (268)
T ss_pred             EeCCHHHHH
Confidence            999988764

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.3e-39  Score=330.26  Aligned_cols=219  Identities=19%  Similarity=0.326  Sum_probs=175.1

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~  104 (606)
                      .|+++||+++|+..     ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++..   ..
T Consensus         4 ~l~~~~l~~~~~~~-----~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~i~~~~~~   77 (277)
T PRK13642          4 ILEVENLVFKYEKE-----SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE-FEGKVKIDGELLTAENVW   77 (277)
T ss_pred             eEEEEEEEEEcCCC-----CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCCEEEECCEECCcCCHH
Confidence            58999999997421     224599999999999999999999999999999999999876 5999999998653   23


Q ss_pred             hhcccEEEEccCCC-CCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhH
Q psy13765        105 AFRRVSCYIQQDDR-LQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKR  182 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~-l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~kr  182 (606)
                      ..++.++|++|++. .++..|+.+.+.. +...      ...+.-+ ++++.-+.+.+.-.  -..+.++..+|+|||||
T Consensus        78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~-~~~~------~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qr  148 (277)
T PRK13642         78 NLRRKIGMVFQNPDNQFVGATVEDDVAF-GMEN------QGIPREEMIKRVDEALLAVNML--DFKTREPARLSGGQKQR  148 (277)
T ss_pred             HHhcceEEEEECHHHhhccCCHHHHHHh-hHHH------cCCCHHHHHHHHHHHHHHCCCH--hHhhCCcccCCHHHHHH
Confidence            45778999999974 5666788666643 1111      0111111 23443333332211  14678899999999999


Q ss_pred             HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765        183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ  261 (606)
Q Consensus       183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~  261 (606)
                      +.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..+|++++|++|+++..|++++
T Consensus       149 v~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~  226 (277)
T PRK13642        149 VAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKAGEIIKEAAPSE  226 (277)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEeCCHHH
Confidence            99999999999999999999999999999999999999875 9999999999875 5 4699999999999999999988


Q ss_pred             HH
Q psy13765        262 LV  263 (606)
Q Consensus       262 ~~  263 (606)
                      +.
T Consensus       227 ~~  228 (277)
T PRK13642        227 LF  228 (277)
T ss_pred             Hh
Confidence            65

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.6e-39  Score=325.33  Aligned_cols=220  Identities=23%  Similarity=0.294  Sum_probs=174.0

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccCC
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSRN  102 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~~  102 (606)
                      +.++++|+++.++        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++    +.+|+|.++|.+..
T Consensus         3 ~~l~~~~l~~~~~--------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~   74 (251)
T PRK14270          3 IKMESKNLNLWYG--------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIY   74 (251)
T ss_pred             cEEEEEEeEEEEC--------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecc
Confidence            4688999999873        35699999999999999999999999999999999998753    25899999998653


Q ss_pred             h-----hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCC-cc-cccCCCCCC
Q psy13765        103 I-----NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNP-RV-MFLDEPTTS  174 (606)
Q Consensus       103 ~-----~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~-~~-~~~de~~~~  174 (606)
                      .     ...++.++|++|++.+++ .|+.+.+.. +...   ...  ....+ ++++.-+.+.+.-. .+ -..+.+...
T Consensus        75 ~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~-~~~~---~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~  147 (251)
T PRK14270         75 DKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAY-GPRI---HGI--KDKKELDKIVEWALKKAALWDEVKDDLKKSALK  147 (251)
T ss_pred             cccccHHHHHhheEEEecCCCcCC-CcHHHHHHh-HHHh---cCC--CcHHHHHHHHHHHHHHcCCchhhhhHhhCCccc
Confidence            1     244677999999999887 788766542 1110   000  01112 23332222222110 01 146788999


Q ss_pred             CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765        175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL  254 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~  254 (606)
                      +|+|||||+.||+||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++|+++
T Consensus       148 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~G~i~  225 (251)
T PRK14270        148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLMGDLI  225 (251)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEECCeEE
Confidence            999999999999999999999999999999999999999999999976 689999999976 577899999999999999


Q ss_pred             EEcChhHHH
Q psy13765        255 YQGATDQLV  263 (606)
Q Consensus       255 ~~G~~~~~~  263 (606)
                      +.|+++++.
T Consensus       226 ~~~~~~~~~  234 (251)
T PRK14270        226 EFNKTEKIF  234 (251)
T ss_pred             EeCCHHHHh
Confidence            999998874

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.4e-39  Score=325.01  Aligned_cols=219  Identities=25%  Similarity=0.361  Sum_probs=174.2

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC----CccEEEECCccCC
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG----VTGQILTNGHSRN  102 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~----~~G~I~~~G~~~~  102 (606)
                      ..++++|+++.++        ++.+++|+|+++++||+++|+||||||||||+|+|+|+.++.    .+|+|.++|.+..
T Consensus         3 ~~l~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~   74 (252)
T PRK14272          3 LLLSAQDVNIYYG--------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIY   74 (252)
T ss_pred             EEEEEeeeEEEEC--------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcc
Confidence            3688999999873        357999999999999999999999999999999999997653    3799999997653


Q ss_pred             -----hhhhcccEEEEccCCCCCCCCcHHHHHHH-cCCccccCCccccCChHHHHHHHHHHHHhcCCcc-----cccCCC
Q psy13765        103 -----INAFRRVSCYIQQDDRLQPLLTIENVMSL-LGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-----MFLDEP  171 (606)
Q Consensus       103 -----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~-~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~-----~~~de~  171 (606)
                           ...+++.++|++|++.+++.+|+.+.+.. .....        ...-+ +....+.+++...++     -.+|.+
T Consensus        75 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--------~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~  145 (252)
T PRK14272         75 GPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--------IRDRD-HLMEVAERSLRGAALWDEVKDRLKTP  145 (252)
T ss_pred             cCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--------CCCHH-HHHHHHHHHHHHcCcchhhhhhhcCC
Confidence                 12456779999999999998898666542 11110        11111 111112222211111     135788


Q ss_pred             CCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCC
Q psy13765        172 TTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGG  251 (606)
Q Consensus       172 ~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G  251 (606)
                      ...+|+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|
T Consensus       146 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G  223 (252)
T PRK14272        146 ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLVG  223 (252)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECC
Confidence            999999999999999999999999999999999999999999999999965 799999999987 577899999999999


Q ss_pred             cEEEEcChhHHHH
Q psy13765        252 QCLYQGATDQLVN  264 (606)
Q Consensus       252 ~~~~~G~~~~~~~  264 (606)
                      ++++.|+++++.+
T Consensus       224 ~i~~~~~~~~~~~  236 (252)
T PRK14272        224 DLVEHGPTDQLFT  236 (252)
T ss_pred             EEEEeCCHHHHHh
Confidence            9999999988743

>KOG0058|consensus

Probab=100.00  E-value=1.8e-39  Score=357.45  Aligned_cols=243  Identities=29%  Similarity=0.404  Sum_probs=180.9

Q ss_pred             ccccccccCCCCCCCCCC-CCCCCceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHH
Q psy13765          3 QVEFELSNSLSSSESGTS-LETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDV   81 (606)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~   81 (606)
                      +.-||+.|..+.-+.... .+..-.-.|+|+||+|.||.+     .+.++|||+||+|+|||++||+||||+||||+.++
T Consensus       439 ~rvFel~dr~P~i~~~G~~~p~~~~G~IeF~~VsFaYP~R-----p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasL  513 (716)
T KOG0058|consen  439 ERVFELMDRKPRIPLTGTLAPDHLQGVIEFEDVSFAYPTR-----PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASL  513 (716)
T ss_pred             HHHHHHhccCCCCCCCCccccccccceEEEEEeeeecCCC-----CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHH
Confidence            455777776554433321 222234479999999999864     45689999999999999999999999999999999


Q ss_pred             HhCCCCCCCccEEEECCccC---ChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHH---HH
Q psy13765         82 LSGYRSNGVTGQILTNGHSR---NINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL---SI  155 (606)
Q Consensus        82 L~g~~~~~~~G~I~~~G~~~---~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv---~i  155 (606)
                      |-.++.| .+|+|.+||.++   +...+|++||+|.|+|.+|...--||+..  |++..        +-.+-+++   +=
T Consensus       514 L~rfY~P-tsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~Y--G~~~~--------t~e~i~~AAk~AN  582 (716)
T KOG0058|consen  514 LLRFYDP-TSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAY--GLDNA--------TDEEIEAAAKMAN  582 (716)
T ss_pred             HHHhcCC-CCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhc--CCCCC--------CHHHHHHHHHHhC
Confidence            9999887 599999999875   45778999999999999998744444432  22211        11111111   11


Q ss_pred             HHHHhcCC-ccc--ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy13765        156 ALELINNP-RVM--FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIH  232 (606)
Q Consensus       156 a~~L~~~~-~~~--~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H  232 (606)
                      |-+++.+- +=+  .-+|....+|||||||++|||||++||+||||||.||+||+++...+.+.|.++.+ ++|||++.|
T Consensus       583 ah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAH  661 (716)
T KOG0058|consen  583 AHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAH  661 (716)
T ss_pred             hHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEeh
Confidence            22222211 111  33445555555555555666666666999999999999999999999999998876 599999999


Q ss_pred             CCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        233 QPSATLFQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       233 ~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      ..+.  .+.+|+|+++++|++++.|+.+|+++
T Consensus       662 RLST--V~~Ad~Ivvi~~G~V~E~G~h~eLl~  691 (716)
T KOG0058|consen  662 RLST--VRHADQIVVIDKGRVVEMGTHDELLS  691 (716)
T ss_pred             hhhH--hhhccEEEEEcCCeEEecccHHHHhh
Confidence            9874  48899999999999999999999875

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=100.00  E-value=7.6e-39  Score=322.71  Aligned_cols=214  Identities=24%  Similarity=0.419  Sum_probs=171.1

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhhc
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAFR  107 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~~  107 (606)
                      |+++|+++.+.        .+ +|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+... ...+
T Consensus         1 l~~~~l~~~~~--------~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p-~~G~v~i~g~~~~~~~~~~   70 (235)
T cd03299           1 LKVENLSKDWK--------EF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP-DSGKILLNGKDITNLPPEK   70 (235)
T ss_pred             CeeEeEEEEeC--------Cc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEECCEEcCcCChhH
Confidence            46889998862        23 89999999999999999999999999999999999876 58999999986532 2235


Q ss_pred             ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc-cccCCCCCCCCchhhhHHHH
Q psy13765        108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV-MFLDEPTTSNPNDQKKRLSI  185 (606)
Q Consensus       108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~krl~I  185 (606)
                      +.++|++|++.+++.+|+.+.+.......       .....+ ++++   .+++..-.+ -..|.+...+|+|||||+.|
T Consensus        71 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~-------~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~LS~G~~qrl~l  140 (235)
T cd03299          71 RDISYVPQNYALFPHMTVYKNIAYGLKKR-------KVDKKEIERKV---LEIAEMLGIDHLLNRKPETLSGGEQQRVAI  140 (235)
T ss_pred             cCEEEEeecCccCCCccHHHHHHHHHHHc-------CCCHHHHHHHH---HHHHHHcCChhHHhcCcccCCHHHHHHHHH
Confidence            68999999999999899876664311000       011111 1222   222222222 14577888899999999999


Q ss_pred             HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765        186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                      |+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. .+.+.||++++|++|++++.|+++++.
T Consensus       141 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~  218 (235)
T cd03299         141 ARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEEVF  218 (235)
T ss_pred             HHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence            99999999999999999999999999999999999775 999999999986 467899999999999999999987764

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.9e-39  Score=329.16  Aligned_cols=220  Identities=22%  Similarity=0.377  Sum_probs=169.5

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF  106 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~  106 (606)
                      ..|+++||+++|+       +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++......
T Consensus         5 ~~l~~~~l~~~~~-------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~   76 (272)
T PRK15056          5 AGIVVNDVTVTWR-------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL-ASGKISILGQPTRQALQ   76 (272)
T ss_pred             ceEEEEeEEEEec-------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEhHHhhc
Confidence            3689999999873       235699999999999999999999999999999999999876 59999999987543222


Q ss_pred             cccEEEEccCCCCCC--CCcHHHHHHHcCCccccCCccccCC-hHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhH
Q psy13765        107 RRVSCYIQQDDRLQP--LLTIENVMSLLGLDESQNTRSSQLS-GGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKR  182 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~--~ltv~~~l~~~gl~~~~~~~~~~lS-gGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~kr  182 (606)
                      ++.++|++|++.+..  ..++++.+.. +......  ..... ...++++.   +++...++- ..|.+...+|||||||
T Consensus        77 ~~~i~~v~q~~~~~~~~~~~~~~~i~~-~~~~~~~--~~~~~~~~~~~~~~---~~l~~~gl~~~~~~~~~~LSgG~~qr  150 (272)
T PRK15056         77 KNLVAYVPQSEEVDWSFPVLVEDVVMM-GRYGHMG--WLRRAKKRDRQIVT---AALARVDMVEFRHRQIGELSGGQKKR  150 (272)
T ss_pred             cceEEEeccccccccCCCcchhhheec-ccccccc--cccCCCHHHHHHHH---HHHHHcCChhHhcCCcccCCHHHHHH
Confidence            346999999986532  2355554421 1110000  00011 11233332   222222232 4588889999999999


Q ss_pred             HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765        183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL  262 (606)
Q Consensus       183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~  262 (606)
                      +.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||+++++ +|++++.|+++++
T Consensus       151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~G~i~~~g~~~~~  228 (272)
T PRK15056        151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-KGTVLASGPTETT  228 (272)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHhc
Confidence            99999999999999999999999999999999999999878999999999976 577899999877 8999999998875

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-38  Score=327.63  Aligned_cols=218  Identities=23%  Similarity=0.309  Sum_probs=174.4

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccC
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSR  101 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~  101 (606)
                      ...|+++||+++++        .+++|+|+|+++++||+++|+||||||||||+++|+|+.++    ..+|+|.++|.+.
T Consensus        18 ~~~l~~~nl~~~~~--------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~   89 (267)
T PRK14237         18 EIALSTKDLHVYYG--------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDI   89 (267)
T ss_pred             CeEEEEeeEEEEEC--------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEc
Confidence            45799999999872        36799999999999999999999999999999999999753    3689999999865


Q ss_pred             C-----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc-----cccCC
Q psy13765        102 N-----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV-----MFLDE  170 (606)
Q Consensus       102 ~-----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~-----~~~de  170 (606)
                      .     ....++.++|++|++.+++ .|+.+.+... ...  .   +..+.-+ +.++   .+++....+     -.+|+
T Consensus        90 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~-~~~--~---~~~~~~~~~~~~---~~~l~~~~l~~~i~~~~~~  159 (267)
T PRK14237         90 NRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFA-LER--A---GVKDKKVLDEIV---ETSLKQAALWDQVKDDLHK  159 (267)
T ss_pred             ccccCChHHHhcceEEEecCCcccc-ccHHHHHHhH-HHh--c---CCCCHHHHHHHH---HHHHHHcCCCchhhhhhcC
Confidence            3     2245678999999998887 5886665431 110  0   0011111 1222   222222222     14688


Q ss_pred             CCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765        171 PTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG  250 (606)
Q Consensus       171 ~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~  250 (606)
                      +...+|+|||||+.||+||+.+|++|+|||||+|||+.++..+.++|+++++ +.|||++||+++ .+.++||++++|++
T Consensus       160 ~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~  237 (267)
T PRK14237        160 SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASDYTAFFYL  237 (267)
T ss_pred             CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcCEEEEEEC
Confidence            9999999999999999999999999999999999999999999999999964 799999999987 57789999999999


Q ss_pred             CcEEEEcChhHHH
Q psy13765        251 GQCLYQGATDQLV  263 (606)
Q Consensus       251 G~~~~~G~~~~~~  263 (606)
                      |++++.|+++++.
T Consensus       238 G~i~~~g~~~~~~  250 (267)
T PRK14237        238 GDLIEYDKTRNIF  250 (267)
T ss_pred             CEEEEeCCHHHHh
Confidence            9999999998874

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=100.00  E-value=6.9e-39  Score=321.25  Aligned_cols=211  Identities=24%  Similarity=0.335  Sum_probs=165.5

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---h
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---N  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~  104 (606)
                      .|+++||+++|+.+    ...+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...   .
T Consensus         6 ~l~~~~l~~~~~~~----~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p-~~G~i~~~g~~~~~~~~~   80 (228)
T PRK10584          6 IVEVHHLKKSVGQG----EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG-SSGEVSLVGQPLHQMDEE   80 (228)
T ss_pred             eEEEeeeEEEccCC----CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-CCeeEEECCEEcccCCHH
Confidence            58999999987421    0113599999999999999999999999999999999999876 59999999986532   1


Q ss_pred             h---h-cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCccc-ccCCCCCCCCch
Q psy13765        105 A---F-RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM-FLDEPTTSNPND  178 (606)
Q Consensus       105 ~---~-~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~-~~de~~~~~s~g  178 (606)
                      .   . ++.++|++|++.+++.+|+.+.+......   +    ..+.- .++++.   +++..-++- ..+.+...+|+|
T Consensus        81 ~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~---~----~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~G  150 (228)
T PRK10584         81 ARAKLRAKHVGFVFQSFMLIPTLNALENVELPALL---R----GESSRQSRNGAK---ALLEQLGLGKRLDHLPAQLSGG  150 (228)
T ss_pred             HHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHh---c----CCCHHHHHHHHH---HHHHHcCCHhHhhCChhhCCHH
Confidence            1   2 35799999999999988986655431100   0    01111 123333   233322332 457788899999


Q ss_pred             hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765        179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLY  255 (606)
Q Consensus       179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~  255 (606)
                      ||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. .+ +.+|++++|++|++++
T Consensus       151 e~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~  226 (228)
T PRK10584        151 EQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQE  226 (228)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEe
Confidence            999999999999999999999999999999999999999999765 899999999987 45 5699999999999875

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=9.6e-39  Score=356.48  Aligned_cols=214  Identities=20%  Similarity=0.323  Sum_probs=174.7

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---h
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---N  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~  104 (606)
                      .|+++||+++|        +++.+|+|+|+++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++...   .
T Consensus        11 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~   81 (510)
T PRK15439         11 LLCARSISKQY--------SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP-DSGTLEIGGNPCARLTPA   81 (510)
T ss_pred             eEEEEeEEEEe--------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCCCCHH
Confidence            59999999987        235699999999999999999999999999999999999876 59999999986532   2


Q ss_pred             hh-cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH
Q psy13765        105 AF-RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL  183 (606)
Q Consensus       105 ~~-~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl  183 (606)
                      .. ++.++||+|++.+++.+|+.+.+.. ++..         ..-.++++.-+.+.+.-.  -.+|.+...|||||||||
T Consensus        82 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~-~~~~---------~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv  149 (510)
T PRK15439         82 KAHQLGIYLVPQEPLLFPNLSVKENILF-GLPK---------RQASMQKMKQLLAALGCQ--LDLDSSAGSLEVADRQIV  149 (510)
T ss_pred             HHHhCCEEEEeccCccCCCCcHHHHhhc-cccc---------chHHHHHHHHHHHHcCCC--ccccCChhhCCHHHHHHH
Confidence            22 3469999999999999999776543 2110         011233433222322221  145778888999999999


Q ss_pred             HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765        184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                      .||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++++.|+++++.
T Consensus       150 ~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~  228 (510)
T PRK15439        150 EILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRDGTIALSGKTADLS  228 (510)
T ss_pred             HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecChHHcC
Confidence            9999999999999999999999999999999999999888999999999976 477899999999999999999987653

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-38  Score=323.44  Aligned_cols=219  Identities=24%  Similarity=0.330  Sum_probs=172.4

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--C--CccEEEECCccCC-
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN--G--VTGQILTNGHSRN-  102 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~--~--~~G~I~~~G~~~~-  102 (606)
                      .|+++||++.++        ++++++|+|+++++||+++|+||||||||||+++|+|+.++  .  .+|+|.++|++.. 
T Consensus         3 ~l~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~   74 (250)
T PRK14240          3 KISVKDLDLFYG--------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYK   74 (250)
T ss_pred             eEEEEEEEEEEC--------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence            488999999873        35699999999999999999999999999999999998642  1  4899999998653 


Q ss_pred             ----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCC-cc-cccCCCCCCC
Q psy13765        103 ----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNP-RV-MFLDEPTTSN  175 (606)
Q Consensus       103 ----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~-~~-~~~de~~~~~  175 (606)
                          ....++.++|++|++.+++ .|+.+.+... .. ..+    ..+..+ ++++.-+...+.-. .+ -..|.+...+
T Consensus        75 ~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~-~~-~~~----~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L  147 (250)
T PRK14240         75 SDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYG-PR-THG----IKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGL  147 (250)
T ss_pred             cccchHHHhccEEEEecCCccCc-ccHHHHHHHH-HH-hcC----CCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCC
Confidence                2345678999999998887 7886655421 10 000    011111 23333222222110 11 1458889999


Q ss_pred             CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765        176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY  255 (606)
Q Consensus       176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~  255 (606)
                      |+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|+++.
T Consensus       148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~  225 (250)
T PRK14240        148 SGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLNGEIVE  225 (250)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999999964 799999999976 5778999999999999999


Q ss_pred             EcChhHHH
Q psy13765        256 QGATDQLV  263 (606)
Q Consensus       256 ~G~~~~~~  263 (606)
                      .|+++++.
T Consensus       226 ~~~~~~~~  233 (250)
T PRK14240        226 FGDTVDLF  233 (250)
T ss_pred             eCCHHHHH
Confidence            99988764

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-38  Score=323.51  Aligned_cols=220  Identities=26%  Similarity=0.370  Sum_probs=173.0

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccCCh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSRNI  103 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~~~  103 (606)
                      .|+++|+++.++        ++.+++|+|+++++||+++|+||||||||||+++|+|+.++    ..+|+|.++|.+...
T Consensus         3 ~l~~~~l~~~~~--------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~   74 (250)
T PRK14262          3 IIEIENFSAYYG--------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD   74 (250)
T ss_pred             eEEEEeeEEEeC--------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence            488999999872        35699999999999999999999999999999999999753    258999999976531


Q ss_pred             -----hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcC-Ccc-cccCCCCCCC
Q psy13765        104 -----NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINN-PRV-MFLDEPTTSN  175 (606)
Q Consensus       104 -----~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~-~~~-~~~de~~~~~  175 (606)
                           ...++.++|++|++.+++ .|+.+.+... ... ...    .+.. .++++.-+.+.+.- ..+ -.+|++...+
T Consensus        75 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~-~~~-~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L  147 (250)
T PRK14262         75 PQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFG-PRI-HGV----KSKHKLDRIVEESLKKAALWDEVKSELNKPGTRL  147 (250)
T ss_pred             chhhHHHhhhhEEEEecCCccCc-ccHHHHHHHH-HHH-cCC----CcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhc
Confidence                 245678999999999887 7886655431 110 000    0111 12222222222211 011 1368889999


Q ss_pred             CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765        176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY  255 (606)
Q Consensus       176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~  255 (606)
                      |+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++|++++|++|+++.
T Consensus       148 S~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~G~i~~  225 (250)
T PRK14262        148 SGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYRGELIE  225 (250)
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999999975 789999999976 4678999999999999999


Q ss_pred             EcChhHHHH
Q psy13765        256 QGATDQLVN  264 (606)
Q Consensus       256 ~G~~~~~~~  264 (606)
                      .|+++++.+
T Consensus       226 ~g~~~~~~~  234 (250)
T PRK14262        226 YGPTREIVE  234 (250)
T ss_pred             ecCHHHHHh
Confidence            999987753

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=100.00  E-value=3.6e-39  Score=312.09  Aligned_cols=176  Identities=31%  Similarity=0.564  Sum_probs=155.6

Q ss_pred             EEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhhh
Q psy13765         30 KFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INAF  106 (606)
Q Consensus        30 ~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~~  106 (606)
                      +++|++++|+        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..   ...+
T Consensus         1 ~~~~l~~~~~--------~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~   71 (180)
T cd03214           1 EVENLSVGYG--------GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKDLASLSPKEL   71 (180)
T ss_pred             CeeEEEEEEC--------CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCcCCHHHH
Confidence            4789998873        25699999999999999999999999999999999999876 5999999998653   3345


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHH
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIA  186 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA  186 (606)
                      ++.++|++|            +++.+|+.+..++.+..||||||||+++|++|+.+                        
T Consensus        72 ~~~i~~~~q------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~------------------------  115 (180)
T cd03214          72 ARKIAYVPQ------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQE------------------------  115 (180)
T ss_pred             HHHHhHHHH------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcC------------------------
Confidence            667999999            78889999888888999999999999977777766                        


Q ss_pred             HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                            |++++|||||+|||+.++..+.+.|++++++ |.|+|+++|+++ .+.++||++++|++|++++.|
T Consensus       116 ------p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~  180 (180)
T cd03214         116 ------PPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG  180 (180)
T ss_pred             ------CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence                  9999999999999999999999999999876 899999999987 466899999999999988654

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=100.00  E-value=6.6e-39  Score=323.44  Aligned_cols=201  Identities=28%  Similarity=0.426  Sum_probs=159.5

Q ss_pred             ccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--hhhhcccEEEEc-cCCCCCCC
Q psy13765         46 QEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--INAFRRVSCYIQ-QDDRLQPL  122 (606)
Q Consensus        46 ~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--~~~~~~~~~yv~-Q~~~l~~~  122 (606)
                      ++.+++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++..  ...+++.++|++ |++.+++.
T Consensus        31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~  109 (236)
T cd03267          31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP-TSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD  109 (236)
T ss_pred             cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence            3567899999999999999999999999999999999999876 5999999997542  234567899998 56778888


Q ss_pred             CcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCC
Q psy13765        123 LTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP  201 (606)
Q Consensus       123 ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEP  201 (606)
                      +|+.+.+.....  .     .+....+ ++++.-+...+.-+  -..|.+...+|+|||||+.||+||+.+|++|+||||
T Consensus       110 ~tv~e~l~~~~~--~-----~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP  180 (236)
T cd03267         110 LPVIDSFYLLAA--I-----YDLPPARFKKRLDELSELLDLE--ELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEP  180 (236)
T ss_pred             CcHHHHHHHHHH--H-----cCCCHHHHHHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            999876654210  0     0111111 22332222222111  145778889999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        202 TTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       202 TsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      |+|||+.++..+.+.|++++++ |+|||+++|+++ .+.++||++++|++|++++.|
T Consensus       181 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g  236 (236)
T cd03267         181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYDG  236 (236)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEecC
Confidence            9999999999999999999775 899999999986 577899999999999998765

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=100.00  E-value=1.2e-38  Score=320.53  Aligned_cols=219  Identities=24%  Similarity=0.430  Sum_probs=168.9

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INA  105 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~  105 (606)
                      |+++|++++++.      .++.+++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..   ...
T Consensus         1 i~~~~l~~~~~~------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~   73 (234)
T cd03251           1 VEFKNVTFRYPG------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV-DSGRILIDGHDVRDYTLAS   73 (234)
T ss_pred             CEEEEEEEEeCC------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC-CCCEEEECCEEhhhCCHHH
Confidence            468999998732      123699999999999999999999999999999999999876 5999999997642   234


Q ss_pred             hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcC-C-cc-cccCCCCCCCCchhhhH
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINN-P-RV-MFLDEPTTSNPNDQKKR  182 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~-~-~~-~~~de~~~~~s~g~~kr  182 (606)
                      .++.++|++|++.+++ .|+.+.+... ...   .....+. ...++..+ .+++.. | .+ -..|.+...+|+|||||
T Consensus        74 ~~~~i~~~~q~~~~~~-~tv~enl~~~-~~~---~~~~~~~-~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~LS~G~~qr  146 (234)
T cd03251          74 LRRQIGLVSQDVFLFN-DTVAENIAYG-RPG---ATREEVE-EAARAANA-HEFIMELPEGYDTVIGERGVKLSGGQRQR  146 (234)
T ss_pred             HHhhEEEeCCCCeecc-ccHHHHhhcc-CCC---CCHHHHH-HHHHHcCc-HHHHHhcccCcceeeccCCCcCCHHHHHH
Confidence            5678999999998887 5886655331 111   0000000 00011111 122211 1 11 13577889999999999


Q ss_pred             HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765        183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL  262 (606)
Q Consensus       183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~  262 (606)
                      +.||+||+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||++.. +. .||++++|++|+++..|+++++
T Consensus       147 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~-~~d~v~~l~~G~i~~~~~~~~~  223 (234)
T cd03251         147 IAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLST-IE-NADRIVVLEDGKIVERGTHEEL  223 (234)
T ss_pred             HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-Hh-hCCEEEEecCCeEeeeCCHHHH
Confidence            9999999999999999999999999999999999999964 8999999999874 54 4999999999999999998877


Q ss_pred             HH
Q psy13765        263 VN  264 (606)
Q Consensus       263 ~~  264 (606)
                      .+
T Consensus       224 ~~  225 (234)
T cd03251         224 LA  225 (234)
T ss_pred             HH
Confidence            54

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-38  Score=323.38  Aligned_cols=219  Identities=21%  Similarity=0.301  Sum_probs=173.7

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccCC-
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSRN-  102 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~~-  102 (606)
                      .++++|+++.++        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++    ..+|+|.++|.+.. 
T Consensus         3 ~l~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~   74 (249)
T PRK14253          3 KFNIENLDLFYG--------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYG   74 (249)
T ss_pred             eEEEeccEEEEC--------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccc
Confidence            588999999873        35799999999999999999999999999999999998764    24899999997652 


Q ss_pred             ---hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcC-Ccc-cccCCCCCCCC
Q psy13765        103 ---INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINN-PRV-MFLDEPTTSNP  176 (606)
Q Consensus       103 ---~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~-~~~-~~~de~~~~~s  176 (606)
                         ....++.++|++|++.+++ .|+.+.+... ...  .. .  .+..+ ++++.-+.+.+.- +.+ -.+|.+...+|
T Consensus        75 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~-~~~--~~-~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS  147 (249)
T PRK14253         75 NIDVADLRIKVGMVFQKPNPFP-MSIYENVAYG-LRA--QG-I--KDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLS  147 (249)
T ss_pred             ccchHHHHhheeEEecCCCcCc-ccHHHHHHhH-HHh--cC-C--CchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCC
Confidence               2355678999999999887 7886655421 110  00 0  01111 2333322222221 111 24688899999


Q ss_pred             chhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEE
Q psy13765        177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ  256 (606)
Q Consensus       177 ~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~  256 (606)
                      +|||||+.||+||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|+++..
T Consensus       148 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~G~i~~~  225 (249)
T PRK14253        148 GGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLMGELVEH  225 (249)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999999999999999999999999999999976 589999999976 57789999999999999999


Q ss_pred             cChhHHH
Q psy13765        257 GATDQLV  263 (606)
Q Consensus       257 G~~~~~~  263 (606)
                      |+++++.
T Consensus       226 g~~~~~~  232 (249)
T PRK14253        226 DDTQVIF  232 (249)
T ss_pred             CCHHHHH
Confidence            9987763

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=1.3e-38  Score=361.58  Aligned_cols=216  Identities=27%  Similarity=0.403  Sum_probs=167.9

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~  103 (606)
                      ..|+++||++.+.       +++++|+|+|+++++||.+||+||||||||||+++|+|++ | .+|+|.+||.+.   +.
T Consensus       348 ~~i~~~~vsf~~~-------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p-~~G~I~i~g~~i~~~~~  418 (588)
T PRK11174        348 VTIEAEDLEILSP-------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P-YQGSLKINGIELRELDP  418 (588)
T ss_pred             ceEEEEeeEEecc-------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C-CCcEEEECCEecccCCH
Confidence            4699999998652       2357999999999999999999999999999999999998 6 589999999764   45


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHH----HHHHHhcCCcc--cccCCCCCCCCc
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLS----IALELINNPRV--MFLDEPTTSNPN  177 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~----ia~~L~~~~~~--~~~de~~~~~s~  177 (606)
                      +.+|+.++||+|++.+++. |+.|.+.. |-.        +.+-.|-+.+.    +..-+..-|+=  -...|....|||
T Consensus       419 ~~lr~~i~~v~Q~~~LF~~-TI~eNI~~-g~~--------~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSG  488 (588)
T PRK11174        419 ESWRKHLSWVGQNPQLPHG-TLRDNVLL-GNP--------DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSV  488 (588)
T ss_pred             HHHHhheEEecCCCcCCCc-CHHHHhhc-CCC--------CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCH
Confidence            7789999999999999876 66544432 211        12222222221    11111112221  123445566777


Q ss_pred             hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      |||||++|||||+++|+||+||||||+||+.++..+.+.|+++. +++|+|+++|+++.  .+.||+|++|++|++++.|
T Consensus       489 GQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~~--i~~aD~Iivl~~G~i~e~G  565 (588)
T PRK11174        489 GQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLED--LAQWDQIWVMQDGQIVQQG  565 (588)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChHH--HHhCCEEEEEeCCeEeecC
Confidence            88888888888888899999999999999999999999999885 47999999999863  4789999999999999999


Q ss_pred             ChhHHHH
Q psy13765        258 ATDQLVN  264 (606)
Q Consensus       258 ~~~~~~~  264 (606)
                      +++++.+
T Consensus       566 ~~~eL~~  572 (588)
T PRK11174        566 DYAELSQ  572 (588)
T ss_pred             CHHHHHh
Confidence            9998864

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.5e-38  Score=326.22  Aligned_cols=220  Identities=23%  Similarity=0.281  Sum_probs=172.9

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccC
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSR  101 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~  101 (606)
                      +..|+++||++.++        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++    ..+|+|.++|++.
T Consensus        18 ~~~l~~~nl~~~~~--------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l   89 (274)
T PRK14265         18 HSVFEVEGVKVFYG--------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNI   89 (274)
T ss_pred             CceEEEeeEEEEeC--------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEec
Confidence            44799999999872        35699999999999999999999999999999999998642    1489999999765


Q ss_pred             C-----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcC-Ccc-cccCCCCCC
Q psy13765        102 N-----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINN-PRV-MFLDEPTTS  174 (606)
Q Consensus       102 ~-----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~-~~~-~~~de~~~~  174 (606)
                      .     ...+++.++|++|++.+++. |+.+.+... ... .     ....-.++++.-+.+.+.- ..+ -.+|++...
T Consensus        90 ~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~-~~~-~-----~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~  161 (274)
T PRK14265         90 YDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFA-PRA-N-----GYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTA  161 (274)
T ss_pred             ccccchhHHHhhcEEEEccCCccccc-cHHHHHHhH-HHh-c-----CchHHHHHHHHHHHHHcccchhhHHHhcCCccc
Confidence            2     23456789999999988875 876655431 110 0     0111112222211222110 001 146788999


Q ss_pred             CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec-----
Q psy13765        175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS-----  249 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~-----  249 (606)
                      +|+|||||+.||+||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|+++ .+.++||++++|+     
T Consensus       162 LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~  239 (274)
T PRK14265        162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEIDE  239 (274)
T ss_pred             CCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEeccccc
Confidence            999999999999999999999999999999999999999999999975 689999999987 5778999999997     


Q ss_pred             ----CCcEEEEcChhHHH
Q psy13765        250 ----GGQCLYQGATDQLV  263 (606)
Q Consensus       250 ----~G~~~~~G~~~~~~  263 (606)
                          +|++++.|+++++.
T Consensus       240 ~~~~~G~~~~~g~~~~~~  257 (274)
T PRK14265        240 YGKRRGKLVEFSPTEQMF  257 (274)
T ss_pred             ccccCceEEEeCCHHHHH
Confidence                89999999998874

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=100.00  E-value=1e-38  Score=322.03  Aligned_cols=221  Identities=27%  Similarity=0.430  Sum_probs=168.7

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INA  105 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~  105 (606)
                      ++++|+++.++.+     +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..   ...
T Consensus         1 l~i~~l~~~~~~~-----~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~   74 (238)
T cd03249           1 IEFKNVSFRYPSR-----PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP-TSGEILLDGVDIRDLNLRW   74 (238)
T ss_pred             CeEEEEEEecCCC-----CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC-CCCEEEECCEehhhcCHHH
Confidence            4689999987421     235699999999999999999999999999999999999876 5999999997642   234


Q ss_pred             hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhc-CCc-c-cccCCCCCCCCchhhhH
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELIN-NPR-V-MFLDEPTTSNPNDQKKR  182 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~-~~~-~-~~~de~~~~~s~g~~kr  182 (606)
                      .++.++|++|++.+++ .|+.+.+... ...   .....+. -..++..+ ..++. -|+ + ...+.+...+|+|||||
T Consensus        75 ~~~~i~~~~q~~~~~~-~tv~e~l~~~-~~~---~~~~~~~-~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~LS~G~~qr  147 (238)
T cd03249          75 LRSQIGLVSQEPVLFD-GTIAENIRYG-KPD---ATDEEVE-EAAKKANI-HDFIMSLPDGYDTLVGERGSQLSGGQKQR  147 (238)
T ss_pred             HHhhEEEECCchhhhh-hhHHHHhhcc-CCC---CCHHHHH-HHHHHcCh-HHHHHhhccccceeeccCCccCCHHHHHH
Confidence            4567999999998876 5886665431 111   0000000 00000111 11111 111 1 13466778999999999


Q ss_pred             HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765        183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL  262 (606)
Q Consensus       183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~  262 (606)
                      +.||+||+.+|++++|||||+|||+.++..+.+.|++++ +|+|||+++|+++. + ..||++++|++|++++.|+.+++
T Consensus       148 v~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~-~-~~~d~v~~l~~G~i~~~~~~~~~  224 (238)
T cd03249         148 IAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLST-I-RNADLIAVLQNGQVVEQGTHDEL  224 (238)
T ss_pred             HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-hhCCEEEEEECCEEEEeCCHHHH
Confidence            999999999999999999999999999999999999997 79999999999874 5 48999999999999999998876


Q ss_pred             HHH
Q psy13765        263 VNY  265 (606)
Q Consensus       263 ~~~  265 (606)
                      .+.
T Consensus       225 ~~~  227 (238)
T cd03249         225 MAQ  227 (238)
T ss_pred             hhc
Confidence            553

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.7e-38  Score=326.22  Aligned_cols=218  Identities=23%  Similarity=0.352  Sum_probs=174.7

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccCC
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSRN  102 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~~  102 (606)
                      ..|+++||+++|+        ++.+|+|+|++|++||+++|+||||||||||+++|+|+.++    ..+|+|.++|.+..
T Consensus        20 ~~l~i~nl~~~~~--------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~   91 (276)
T PRK14271         20 PAMAAVNLTLGFA--------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIF   91 (276)
T ss_pred             cEEEEeeEEEEEC--------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcc
Confidence            4689999999973        35799999999999999999999999999999999999764    25899999997653


Q ss_pred             ----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHH-HHHHHHHHHhcCCccc-----ccCCCC
Q psy13765        103 ----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQK-KRLSIALELINNPRVM-----FLDEPT  172 (606)
Q Consensus       103 ----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqr-qRv~ia~~L~~~~~~~-----~~de~~  172 (606)
                          ...+++.++|++|++.+++ .|+.+.+... .... +    ..+..+. +++   .+++...++.     .+++..
T Consensus        92 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~-~~~~-~----~~~~~~~~~~~---~~~l~~~~l~~~~~~~l~~~~  161 (276)
T PRK14271         92 NYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAG-VRAH-K----LVPRKEFRGVA---QARLTEVGLWDAVKDRLSDSP  161 (276)
T ss_pred             ccchhHHHhhheEEeccCCccCC-ccHHHHHHHH-HHhc-c----CCCHHHHHHHH---HHHHHHcCCCchhhhHhhCCc
Confidence                2345778999999999888 6886655421 1100 0    0122222 222   2222222221     357788


Q ss_pred             CCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765        173 TSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ  252 (606)
Q Consensus       173 ~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~  252 (606)
                      ..+|+|||||+.||+||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+++|++++|++|+
T Consensus       162 ~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~G~  239 (276)
T PRK14271        162 FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFDGR  239 (276)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence            89999999999999999999999999999999999999999999999976 589999999976 5778999999999999


Q ss_pred             EEEEcChhHHHH
Q psy13765        253 CLYQGATDQLVN  264 (606)
Q Consensus       253 ~~~~G~~~~~~~  264 (606)
                      ++..|+++++.+
T Consensus       240 i~~~g~~~~~~~  251 (276)
T PRK14271        240 LVEEGPTEQLFS  251 (276)
T ss_pred             EEEeCCHHHHHh
Confidence            999999988743

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.1e-39  Score=356.50  Aligned_cols=219  Identities=21%  Similarity=0.306  Sum_probs=177.7

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC-CCccEEEECCccCCh---
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN-GVTGQILTNGHSRNI---  103 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~-~~~G~I~~~G~~~~~---  103 (606)
                      .|+++||+++|        +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ +.+|+|.++|++...   
T Consensus         5 ~l~~~nl~~~~--------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~   76 (506)
T PRK13549          5 LLEMKNITKTF--------GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNI   76 (506)
T ss_pred             eEEEeeeEEEe--------CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCH
Confidence            58999999987        235799999999999999999999999999999999999875 269999999986532   


Q ss_pred             h-hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhh
Q psy13765        104 N-AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQK  180 (606)
Q Consensus       104 ~-~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~  180 (606)
                      . ..++.++||+|++.+++.+|+.+.+.. ++...   ..+..+..+ ++++.   +++..-.+- ..|.+...||||||
T Consensus        77 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~-~~~~~---~~~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LSgGqk  149 (506)
T PRK13549         77 RDTERAGIAIIHQELALVKELSVLENIFL-GNEIT---PGGIMDYDAMYLRAQ---KLLAQLKLDINPATPVGNLGLGQQ  149 (506)
T ss_pred             HHHHHCCeEEEEeccccCCCCcHHHHhhh-ccccc---ccCCcCHHHHHHHHH---HHHHHcCCCCCcccchhhCCHHHH
Confidence            1 235679999999999999999876643 22110   000112111 23333   333333332 56889999999999


Q ss_pred             hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765        181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD  260 (606)
Q Consensus       181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~  260 (606)
                      ||+.||+||+.+|++|||||||+|||+.++..+.++|++++++|+|||++||++. .+.++||++++|++|++++.|+++
T Consensus       150 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~  228 (506)
T PRK13549        150 QLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRDGRHIGTRPAA  228 (506)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEECCEEeeecccc
Confidence            9999999999999999999999999999999999999999888999999999976 577899999999999999999887


Q ss_pred             HH
Q psy13765        261 QL  262 (606)
Q Consensus       261 ~~  262 (606)
                      ++
T Consensus       229 ~~  230 (506)
T PRK13549        229 GM  230 (506)
T ss_pred             cC
Confidence            64

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=100.00  E-value=1.1e-38  Score=308.10  Aligned_cols=172  Identities=33%  Similarity=0.541  Sum_probs=149.2

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-----h
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-----I  103 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~-----~  103 (606)
                      |+++|++++++        ++++++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..     .
T Consensus         1 i~~~~l~~~~~--------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~   71 (178)
T cd03229           1 LELKNVSKRYG--------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP-DSGSILIDGEDLTDLEDEL   71 (178)
T ss_pred             CEEEEEEEEEC--------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEccccchhH
Confidence            46899999873        35699999999999999999999999999999999999876 5999999997643     2


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL  183 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl  183 (606)
                      ...++.++|++|++.+++..|+.+.+...            ||||||||+++|++|+.+                     
T Consensus        72 ~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------lS~G~~qr~~la~al~~~---------------------  118 (178)
T cd03229          72 PPLRRRIGMVFQDFALFPHLTVLENIALG------------LSGGQQQRVALARALAMD---------------------  118 (178)
T ss_pred             HHHhhcEEEEecCCccCCCCCHHHheeec------------CCHHHHHHHHHHHHHHCC---------------------
Confidence            34567899999999998888987654321            888888888876666666                     


Q ss_pred             HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765        184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQ  252 (606)
Q Consensus       184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~  252 (606)
                               |++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. .+.+.||++++|++|+
T Consensus       119 ---------p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~  178 (178)
T cd03229         119 ---------PDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK  178 (178)
T ss_pred             ---------CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence                     9999999999999999999999999999887 899999999976 5667999999999885

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.6e-38  Score=325.72  Aligned_cols=220  Identities=25%  Similarity=0.329  Sum_probs=174.9

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccCC
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSRN  102 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~~  102 (606)
                      ..++++|+++++.        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++    +.+|+|.++|.+..
T Consensus        24 ~~l~~~nl~~~~~--------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~   95 (272)
T PRK14236         24 TALEVRNLNLFYG--------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY   95 (272)
T ss_pred             cEEEEEEEEEEEC--------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECc
Confidence            3699999999873        35699999999999999999999999999999999999763    25899999998653


Q ss_pred             -----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCc-c-cccCCCCCC
Q psy13765        103 -----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPR-V-MFLDEPTTS  174 (606)
Q Consensus       103 -----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~-~-~~~de~~~~  174 (606)
                           ...+++.++|++|++.+++. |+.+.+.. +.. ....    -+.. .++++.-+.+.+.-.+ + -.+|.+...
T Consensus        96 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~-~~~-~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~  168 (272)
T PRK14236         96 DKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVY-GLR-LQGI----NNRRVLDEAVERSLRGAALWDEVKDRLHENAFG  168 (272)
T ss_pred             ccccCHHHHhccEEEEecCCccCcc-cHHHHHHH-HHH-hcCC----CcHHHHHHHHHHHHHHcCCChhHHHHhhCCccc
Confidence                 23457789999999998886 88665542 111 0000    0111 1233333333322111 1 146788899


Q ss_pred             CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765        175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL  254 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~  254 (606)
                      +|+|||||+.||+||+++|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.+.||++++|++|+++
T Consensus       169 LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~  246 (272)
T PRK14236        169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYMGKLV  246 (272)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEECCEEE
Confidence            999999999999999999999999999999999999999999999976 789999999976 467899999999999999


Q ss_pred             EEcChhHHH
Q psy13765        255 YQGATDQLV  263 (606)
Q Consensus       255 ~~G~~~~~~  263 (606)
                      ..|+++++.
T Consensus       247 ~~g~~~~~~  255 (272)
T PRK14236        247 EYGDTDTLF  255 (272)
T ss_pred             ecCCHHHHh
Confidence            999988764

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=100.00  E-value=1.4e-38  Score=319.01  Aligned_cols=219  Identities=26%  Similarity=0.436  Sum_probs=168.1

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~  104 (606)
                      .|+++|++++++       +.+.+++|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|.+..   ..
T Consensus         2 ~l~~~~l~~~~~-------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~   73 (229)
T cd03254           2 EIEFENVNFSYD-------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP-QKGQILIDGIDIRDISRK   73 (229)
T ss_pred             eEEEEEEEEecC-------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCCEEEECCEeHHHcCHH
Confidence            478999999873       124699999999999999999999999999999999999876 5999999997642   34


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcC-C-cc-cccCCCCCCCCchhhh
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINN-P-RV-MFLDEPTTSNPNDQKK  181 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~-~-~~-~~~de~~~~~s~g~~k  181 (606)
                      .+++.++|++|++.+++. |+.+.+.....    +.....+ -...+++.+. +++.. | .+ -.++.+...+|+||||
T Consensus        74 ~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~----~~~~~~~-~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~LS~G~~~  146 (229)
T cd03254          74 SLRSMIGVVLQDTFLFSG-TIMENIRLGRP----NATDEEV-IEAAKEAGAH-DFIMKLPNGYDTVLGENGGNLSQGERQ  146 (229)
T ss_pred             HHhhhEEEecCCchhhhh-HHHHHHhccCC----CCCHHHH-HHHHHHhChH-HHHHhCcccccCHhhcCCCcCCHHHHH
Confidence            557789999999988775 77655543211    0000000 0001111111 11111 1 11 1346677899999999


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ  261 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~  261 (606)
                      |+.||+||+.+|++++|||||+|||+.++..+.+.|++++ +|+|||++||++.. + ..||++++|++|++++.|+.++
T Consensus       147 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~i~~l~~g~~~~~~~~~~  223 (229)
T cd03254         147 LLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-I-KNADKILVLDDGKIIEEGTHDE  223 (229)
T ss_pred             HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCEEEEEeCCeEEEeCCHHH
Confidence            9999999999999999999999999999999999999996 58999999999864 5 4699999999999999998877


Q ss_pred             HHH
Q psy13765        262 LVN  264 (606)
Q Consensus       262 ~~~  264 (606)
                      +.+
T Consensus       224 ~~~  226 (229)
T cd03254         224 LLA  226 (229)
T ss_pred             HHh
Confidence            643

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.2e-38  Score=322.19  Aligned_cols=218  Identities=25%  Similarity=0.355  Sum_probs=172.7

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--C--CCccEEEECCccCC-
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS--N--GVTGQILTNGHSRN-  102 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~--~--~~~G~I~~~G~~~~-  102 (606)
                      .|+++|++++++        .+++|+|+|++|++||+++|+||||||||||+++|+|+.+  +  ..+|+|.++|++.. 
T Consensus         4 ~l~~~~l~~~~~--------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~   75 (251)
T PRK14251          4 IISAKDVHLSYG--------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYG   75 (251)
T ss_pred             eEEEEeeEEEEC--------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccc
Confidence            589999999872        3579999999999999999999999999999999999975  2  25899999998642 


Q ss_pred             ----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH--HHHHHHHHHHHhcC-Ccc-cccCCCCCC
Q psy13765        103 ----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG--QKKRLSIALELINN-PRV-MFLDEPTTS  174 (606)
Q Consensus       103 ----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG--qrqRv~ia~~L~~~-~~~-~~~de~~~~  174 (606)
                          ....++.++|++|++.+++ .|+.+.+... ...      .+....  .++++.-+.+.+.- ..+ ..+|.+...
T Consensus        76 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~-~~~------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~  147 (251)
T PRK14251         76 SKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYG-LKI------AGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQA  147 (251)
T ss_pred             ccchHHHhhccEEEEecCCccCC-CcHHHHHHHH-HHH------cCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhh
Confidence                1245678999999998886 6887665431 110      011111  12333322222211 000 245888999


Q ss_pred             CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765        175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL  254 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~  254 (606)
                      +|+|||||+.||+||+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+.||++++|++|+++
T Consensus       148 LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~  225 (251)
T PRK14251        148 FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLMNGDLI  225 (251)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEECCEEE
Confidence            999999999999999999999999999999999999999999999864 699999999986 477889999999999999


Q ss_pred             EEcChhHHH
Q psy13765        255 YQGATDQLV  263 (606)
Q Consensus       255 ~~G~~~~~~  263 (606)
                      ..|+++++.
T Consensus       226 ~~~~~~~~~  234 (251)
T PRK14251        226 EAGPTEEMF  234 (251)
T ss_pred             EeCCHHHHH
Confidence            999988764

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=100.00  E-value=2.1e-38  Score=322.68  Aligned_cols=217  Identities=22%  Similarity=0.336  Sum_probs=168.0

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCcc-----CC
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-----RN  102 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~-----~~  102 (606)
                      .|+++||++.++        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++     ..
T Consensus         3 ~l~~~~l~~~~~--------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~   73 (253)
T TIGR02323         3 LLQVSGLSKSYG--------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP-DHGTATYIMRSGAELELY   73 (253)
T ss_pred             eEEEeeeEEEeC--------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEEecccccccccc
Confidence            589999999873        35689999999999999999999999999999999999876 59999999865     32


Q ss_pred             ---hhh----hcccEEEEccCCC--CCCCCcHHHHHH-HcCCccccCCccccCChHHHHHHHHHHHHhcCCcc--cccCC
Q psy13765        103 ---INA----FRRVSCYIQQDDR--LQPLLTIENVMS-LLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV--MFLDE  170 (606)
Q Consensus       103 ---~~~----~~~~~~yv~Q~~~--l~~~ltv~~~l~-~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~--~~~de  170 (606)
                         ...    .++.++|++|++.  +.+..|+.+.+. .+......+      .+-.+++   +.+++..-++  -.+|.
T Consensus        74 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~------~~~~~~~---~~~~l~~l~l~~~~~~~  144 (253)
T TIGR02323        74 QLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARH------YGNIRAA---AHDWLEEVEIDPTRIDD  144 (253)
T ss_pred             cCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccc------hHHHHHH---HHHHHHHcCCChhhhhc
Confidence               111    2356999999975  344556543332 110000000      0101122   2233333333  25678


Q ss_pred             CCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeec
Q psy13765        171 PTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLS  249 (606)
Q Consensus       171 ~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~  249 (606)
                      +...+|||||||+.||+||+++|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. .+...+|++++|+
T Consensus       145 ~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~  223 (253)
T TIGR02323       145 LPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQ  223 (253)
T ss_pred             CchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE
Confidence            88899999999999999999999999999999999999999999999998764 899999999976 5667899999999


Q ss_pred             CCcEEEEcChhHHH
Q psy13765        250 GGQCLYQGATDQLV  263 (606)
Q Consensus       250 ~G~~~~~G~~~~~~  263 (606)
                      +|++++.|+++++.
T Consensus       224 ~G~i~~~~~~~~~~  237 (253)
T TIGR02323       224 QGRVVESGLTDQVL  237 (253)
T ss_pred             CCEEEEECCHHHHh
Confidence            99999999988764

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.9e-38  Score=326.50  Aligned_cols=218  Identities=24%  Similarity=0.362  Sum_probs=172.7

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccCC
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSRN  102 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~~  102 (606)
                      ..|+++||+++|+        ++.+|+|+|++|++||+++|+||||||||||+++|+|+.++    +.+|+|.++|.+..
T Consensus        38 ~~l~i~~l~~~~~--------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~  109 (285)
T PRK14254         38 TVIEARDLNVFYG--------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY  109 (285)
T ss_pred             ceEEEEEEEEEEC--------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence            4689999999872        35699999999999999999999999999999999999752    35899999997642


Q ss_pred             -----hhhhcccEEEEccCCCCCCCCcHHHHHHHc-CCccccCCccccCChHHHHHHHHHHHHhcCC-cc-cccCCCCCC
Q psy13765        103 -----INAFRRVSCYIQQDDRLQPLLTIENVMSLL-GLDESQNTRSSQLSGGQKKRLSIALELINNP-RV-MFLDEPTTS  174 (606)
Q Consensus       103 -----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~-gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~-~~-~~~de~~~~  174 (606)
                           ...+++.++|++|++.+++. |+.+.+... ...        ....-.++++.-+.+.+.-. .+ -.+|++...
T Consensus       110 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~--------~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~  180 (285)
T PRK14254        110 DADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQ--------GYDGDIDERVEESLRRAALWDEVKDQLDSSGLD  180 (285)
T ss_pred             ccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCCchhHHHHhCCccc
Confidence                 23456789999999988885 886655431 111        01111233443333332211 01 146888999


Q ss_pred             CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceee-eecCCcE
Q psy13765        175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVY-LLSGGQC  253 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~-~L~~G~~  253 (606)
                      ||+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ .|||+++|++. .+.++|||++ +|++|++
T Consensus       181 LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~~-~i~~~~dri~v~l~~G~i  258 (285)
T PRK14254        181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQ-QAARISDKTAVFLTGGEL  258 (285)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHH-HHHhhcCEEEEEeeCCEE
Confidence            9999999999999999999999999999999999999999999999764 89999999976 5778999975 6799999


Q ss_pred             EEEcChhHHH
Q psy13765        254 LYQGATDQLV  263 (606)
Q Consensus       254 ~~~G~~~~~~  263 (606)
                      +..|+++++.
T Consensus       259 ~~~g~~~~~~  268 (285)
T PRK14254        259 VEFDDTDKIF  268 (285)
T ss_pred             EEeCCHHHHH
Confidence            9999988763

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=100.00  E-value=1.5e-38  Score=326.75  Aligned_cols=226  Identities=24%  Similarity=0.348  Sum_probs=176.1

Q ss_pred             EEEEEeeEEEEecCC-cccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---
Q psy13765         28 EIKFKDLTYTVSTGL-GFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---  103 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~-~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---  103 (606)
                      .|+++||++.++.+. .-...++.+++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...   
T Consensus         3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~sG~i~~~g~~~~~~~~   81 (268)
T PRK10419          3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP-SQGNVSWRGEPLAKLNR   81 (268)
T ss_pred             eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEeccccCh
Confidence            488999999984210 0000136799999999999999999999999999999999999776 59999999986431   


Q ss_pred             ---hhhcccEEEEccCC--CCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc--cccCCCCCCCC
Q psy13765        104 ---NAFRRVSCYIQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV--MFLDEPTTSNP  176 (606)
Q Consensus       104 ---~~~~~~~~yv~Q~~--~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~--~~~de~~~~~s  176 (606)
                         ...++.++|++|++  .+++..|+.+.+... +...     .+++..+.+  ..+.+++..-.+  .++|.+...+|
T Consensus        82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~-~~~~-----~~~~~~~~~--~~~~~~l~~~gl~~~~~~~~~~~LS  153 (268)
T PRK10419         82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREP-LRHL-----LSLDKAERL--ARASEMLRAVDLDDSVLDKRPPQLS  153 (268)
T ss_pred             hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHH-HHhh-----ccCCHHHHH--HHHHHHHHHcCCChhHhhCCCccCC
Confidence               23467899999997  466778887665321 1100     012222221  122333333333  25688899999


Q ss_pred             chhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765        177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLY  255 (606)
Q Consensus       177 ~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~  255 (606)
                      +|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|+|+++|++. .+.++||++++|++|++++
T Consensus       154 ~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~  232 (268)
T PRK10419        154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDNGQIVE  232 (268)
T ss_pred             hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEECCEEee
Confidence            99999999999999999999999999999999999999999999875 899999999976 5778999999999999999


Q ss_pred             EcChhHHH
Q psy13765        256 QGATDQLV  263 (606)
Q Consensus       256 ~G~~~~~~  263 (606)
                      .|+++++.
T Consensus       233 ~g~~~~~~  240 (268)
T PRK10419        233 TQPVGDKL  240 (268)
T ss_pred             eCChhhcc
Confidence            99988764

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=100.00  E-value=1.5e-38  Score=315.80  Aligned_cols=200  Identities=24%  Similarity=0.342  Sum_probs=160.7

Q ss_pred             eeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-------hhh
Q psy13765         33 DLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-------INA  105 (606)
Q Consensus        33 nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~-------~~~  105 (606)
                      ||+++|.        ++.+  |+|+++++ |+++|+||||||||||+++|+|+.++ .+|+|.++|.+..       ...
T Consensus         5 ~l~~~~~--------~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~   72 (214)
T cd03297           5 DIEKRLP--------DFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP-DGGTIVLNGTVLFDSRKKINLPP   72 (214)
T ss_pred             eeeEecC--------Ceee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEecccccchhhhhh
Confidence            7888762        3444  99999999 99999999999999999999999876 5999999997642       123


Q ss_pred             hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCCh-HHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHH
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSG-GQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRL  183 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSg-GqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl  183 (606)
                      .++.++|++|++.+++.+|+.+.+... ....        .. ..++++   .+++..-.+- ..|.+...+|+|||||+
T Consensus        73 ~~~~i~~~~q~~~~~~~~t~~~~l~~~-~~~~--------~~~~~~~~~---~~~l~~~~l~~~~~~~~~~LS~G~~qrv  140 (214)
T cd03297          73 QQRKIGLVFQQYALFPHLNVRENLAFG-LKRK--------RNREDRISV---DELLDLLGLDHLLNRYPAQLSGGEKQRV  140 (214)
T ss_pred             HhhcEEEEecCCccCCCCCHHHHHHHH-HhhC--------CHHHHHHHH---HHHHHHcCCHhHhhcCcccCCHHHHHHH
Confidence            467899999999999989987765432 1100        11 112222   2333322221 45788899999999999


Q ss_pred             HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      .||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|++|+++..|
T Consensus       141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g  214 (214)
T cd03297         141 ALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG  214 (214)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence            9999999999999999999999999999999999999875 899999999976 467899999999999998765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0055|consensus

Probab=100.00  E-value=4.4e-37  Score=355.39  Aligned_cols=224  Identities=27%  Similarity=0.456  Sum_probs=165.6

Q ss_pred             CceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---
Q psy13765         25 DRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---  101 (606)
Q Consensus        25 ~~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---  101 (606)
                      ..-.|+|+||+|+||.+     .+..+|+|+|+.|++||.+||+|||||||||++++|.+++.| .+|+|++||.+.   
T Consensus       347 ~~g~ief~nV~FsYPsR-----pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP-~~G~V~idG~di~~~  420 (1228)
T KOG0055|consen  347 IKGEIEFRNVCFSYPSR-----PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDP-TSGEVLIDGEDIRNL  420 (1228)
T ss_pred             cccceEEEEEEecCCCC-----CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCC-CCceEEEcCccchhc
Confidence            34579999999999754     356899999999999999999999999999999999999887 599999999864   


Q ss_pred             ChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCC-ccc--ccCCCCCCCCch
Q psy13765        102 NINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNP-RVM--FLDEPTTSNPND  178 (606)
Q Consensus       102 ~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~-~~~--~~de~~~~~s~g  178 (606)
                      +.+.+|.++|.|.|+|.+|.. |+.|.+.. |.++.-...+     -+..|.+-|...+.+- +=+  ...|....||||
T Consensus       421 ~~~~lr~~iglV~QePvlF~~-tI~eNI~~-G~~dat~~~i-----~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGG  493 (1228)
T KOG0055|consen  421 NLKWLRSQIGLVSQEPVLFAT-TIRENIRY-GKPDATREEI-----EEAAKAANAHDFILKLPDGYDTLVGERGVQLSGG  493 (1228)
T ss_pred             chHHHHhhcCeeeechhhhcc-cHHHHHhc-CCCcccHHHH-----HHHHHHccHHHHHHhhHHhhcccccCCCCCCChH
Confidence            457789999999999988764 44322211 2211000000     0111222222222211 100  112233335555


Q ss_pred             hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      ||||++|||||++||+||+||||||+||+.+...+.+.|.++. +|+|.|+++|+.+. + +.+|++++|++|++++.|+
T Consensus       494 QKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLSt-I-rnaD~I~v~~~G~IvE~G~  570 (1228)
T KOG0055|consen  494 QKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLST-I-RNADKIAVMEEGKIVEQGT  570 (1228)
T ss_pred             HHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehhh-h-hccCEEEEEECCEEEEecC
Confidence            5555556666666699999999999999999999999998765 48999999999874 5 6699999999999999999


Q ss_pred             hhHHHH
Q psy13765        259 TDQLVN  264 (606)
Q Consensus       259 ~~~~~~  264 (606)
                      ++|+++
T Consensus       571 h~ELi~  576 (1228)
T KOG0055|consen  571 HDELIA  576 (1228)
T ss_pred             HHHHHh
Confidence            999986

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-38  Score=322.19  Aligned_cols=221  Identities=20%  Similarity=0.280  Sum_probs=170.2

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--C--CCccEEEECCccCC
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS--N--GVTGQILTNGHSRN  102 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~--~--~~~G~I~~~G~~~~  102 (606)
                      +.-+++||++.++        ++.+|+|+||++++||+++|+||||||||||+++|+|+.+  +  +.+|+|.++|++..
T Consensus         4 ~~~~~~~l~~~~~--------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~   75 (251)
T PRK14244          4 IHASVKNLNLWYG--------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVY   75 (251)
T ss_pred             eEEEeeeEEEEEC--------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehH
Confidence            3456899999872        3579999999999999999999999999999999999864  2  25899999997642


Q ss_pred             h-----hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCc-c-cccCCCCCC
Q psy13765        103 I-----NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPR-V-MFLDEPTTS  174 (606)
Q Consensus       103 ~-----~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~-~-~~~de~~~~  174 (606)
                      .     ..+++.++|++|++.+++. |+.+.+.. +.. ..+..   ...-+ ++++.-+.+.+.-.+ + -.+|.+...
T Consensus        76 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~-~~~-~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~  149 (251)
T PRK14244         76 SVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAY-GPK-LHGLA---KNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFE  149 (251)
T ss_pred             hcccchHHHhhhEEEEecCcccccC-CHHHHHHH-HHH-hcCCC---CCHHHHHHHHHHHHHHcCCCchhhhHhhcChhh
Confidence            1     2356789999999988886 77655432 110 00100   01111 222222222221111 1 135778889


Q ss_pred             CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765        175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL  254 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~  254 (606)
                      +|+|||||+.||+||+++|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|++. .+.+.||++++|++|+++
T Consensus       150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~  227 (251)
T PRK14244        150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMK-QAKKVSDRVAFFQSGRIV  227 (251)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhcCEEEEEECCEEE
Confidence            999999999999999999999999999999999999999999999864 899999999987 577899999999999999


Q ss_pred             EEcChhHHH
Q psy13765        255 YQGATDQLV  263 (606)
Q Consensus       255 ~~G~~~~~~  263 (606)
                      +.|+++++.
T Consensus       228 ~~~~~~~~~  236 (251)
T PRK14244        228 EYNTTQEIF  236 (251)
T ss_pred             EeCCHHHHh
Confidence            999988764

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=1.2e-38  Score=355.07  Aligned_cols=219  Identities=22%  Similarity=0.331  Sum_probs=177.9

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---h
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---N  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~  104 (606)
                      .|+++||+++|        +++++|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++...   .
T Consensus         4 ~i~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~   74 (501)
T PRK10762          4 LLQLKGIDKAF--------PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR-DAGSILYLGKEVTFNGPK   74 (501)
T ss_pred             eEEEeeeEEEe--------CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCCCCHH
Confidence            48999999987        235799999999999999999999999999999999999876 59999999986532   1


Q ss_pred             -hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhh
Q psy13765        105 -AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKK  181 (606)
Q Consensus       105 -~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~k  181 (606)
                       ..++.++||+|++.+++.+|+.+.+.. ++...  ...+.++..+ ++++.   +++..-.+- .+|.+...+||||||
T Consensus        75 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~-~~~~~--~~~~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LSgG~~q  148 (501)
T PRK10762         75 SSQEAGIGIIHQELNLIPQLTIAENIFL-GREFV--NRFGRIDWKKMYAEAD---KLLARLNLRFSSDKLVGELSIGEQQ  148 (501)
T ss_pred             HHHhCCEEEEEcchhccCCCcHHHHhhh-ccccc--cccCccCHHHHHHHHH---HHHHHcCCCCCccCchhhCCHHHHH
Confidence             234679999999999999999887643 21110  0001122222 33433   333333332 468899999999999


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ  261 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~  261 (606)
                      |+.||+||+.+|++|+|||||+|||+.++..+.++|++++++|.|||++|||+. .+.++||++++|++|+++..|++++
T Consensus       149 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~  227 (501)
T PRK10762        149 MVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRDGQFIAEREVAD  227 (501)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEecCcCc
Confidence            999999999999999999999999999999999999999888999999999986 5778999999999999999998765


Q ss_pred             H
Q psy13765        262 L  262 (606)
Q Consensus       262 ~  262 (606)
                      +
T Consensus       228 ~  228 (501)
T PRK10762        228 L  228 (501)
T ss_pred             C
Confidence            4

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=100.00  E-value=3.9e-38  Score=319.65  Aligned_cols=230  Identities=21%  Similarity=0.255  Sum_probs=171.1

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCccEEEECCccCC---hh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS-NGVTGQILTNGHSRN---IN  104 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~-~~~~G~I~~~G~~~~---~~  104 (606)
                      |+++||+++++        ++++|+|+|++|++||+++|+||||||||||+++|+|+.+ +..+|+|.++|.+..   ..
T Consensus         2 i~~~nl~~~~~--------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~   73 (248)
T PRK09580          2 LSIKDLHVSVE--------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPE   73 (248)
T ss_pred             eEEEEEEEEeC--------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHH
Confidence            78999999873        3569999999999999999999999999999999999852 236899999997643   22


Q ss_pred             hh-cccEEEEccCCCCCCCCcHHHHHHHcCCccccC-CccccCCh-HHHHHHHHHHHHhcCCcccccCCCCC-CCCchhh
Q psy13765        105 AF-RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQN-TRSSQLSG-GQKKRLSIALELINNPRVMFLDEPTT-SNPNDQK  180 (606)
Q Consensus       105 ~~-~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~-~~~~~lSg-GqrqRv~ia~~L~~~~~~~~~de~~~-~~s~g~~  180 (606)
                      .. ++.++|++|++.+++.++....+... ...... .....+.. +.+.++.-..+.+.-|+ -..+.+.. .+|+|||
T Consensus        74 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LS~G~~  151 (248)
T PRK09580         74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTA-LNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPE-DLLTRSVNVGFSGGEK  151 (248)
T ss_pred             HHhhcceEEEecCchhccchhHHHHHHHh-hhhhhcccccccchHHHHHHHHHHHHHHcCCCh-hhcccCCCCCCCHHHH
Confidence            22 35699999999888877754443321 111000 00011111 22233332223222221 13455554 7999999


Q ss_pred             hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh-cceeeeecCCcEEEEcCh
Q psy13765        181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQM-FDQVYLLSGGQCLYQGAT  259 (606)
Q Consensus       181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~-~D~v~~L~~G~~~~~G~~  259 (606)
                      ||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+... +|++++|++|++++.|++
T Consensus       152 qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~g~i~~~g~~  230 (248)
T PRK09580        152 KRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDF  230 (248)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEECCeEEEeCCH
Confidence            9999999999999999999999999999999999999999877899999999976 45555 899999999999999998


Q ss_pred             hHHHHHHHhCC
Q psy13765        260 DQLVNYLSSVN  270 (606)
Q Consensus       260 ~~~~~~f~~~g  270 (606)
                      +.+ ..++..+
T Consensus       231 ~~~-~~~~~~~  240 (248)
T PRK09580        231 TLV-KQLEEQG  240 (248)
T ss_pred             HHH-HHHHhcC
Confidence            855 3334333

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.6e-38  Score=320.88  Aligned_cols=219  Identities=25%  Similarity=0.317  Sum_probs=171.6

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CC--CccEEEECCccCC
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS--NG--VTGQILTNGHSRN  102 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~--~~--~~G~I~~~G~~~~  102 (606)
                      ..|+++||+++++        .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+  +.  .+|+|.++|++..
T Consensus         4 ~~l~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~   75 (252)
T PRK14255          4 KIITSSDVHLFYG--------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIY   75 (252)
T ss_pred             ceEEEEeEEEEEC--------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcc
Confidence            3589999999873        3579999999999999999999999999999999999854  32  4899999998652


Q ss_pred             -----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH--HHHHHHHHHHhcCC-cc-cccCCCCC
Q psy13765        103 -----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ--KKRLSIALELINNP-RV-MFLDEPTT  173 (606)
Q Consensus       103 -----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq--rqRv~ia~~L~~~~-~~-~~~de~~~  173 (606)
                           ....++.++|++|++.+++ .|+.+.+... ... .+     ....+  ++++.-+.+.+.-. .+ -.++.+..
T Consensus        76 ~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~-~~~-~~-----~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~  147 (252)
T PRK14255         76 APNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYG-LRL-AG-----VKDKAVLDEAVETSLKQAAIWDEVKDHLHESAL  147 (252)
T ss_pred             cccccHHHhcCeEEEEECCCccCC-CcHHHHHHHH-HHH-cC-----CCCHHHHHHHHHHHHHHcCCccchhhHHhcCcc
Confidence                 2345678999999998888 5886655431 100 00     11111  22222121111110 01 13578889


Q ss_pred             CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765        174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC  253 (606)
Q Consensus       174 ~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~  253 (606)
                      .+|+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|++. .+.+.||++++|++|++
T Consensus       148 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~G~i  225 (252)
T PRK14255        148 SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLTGNL  225 (252)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEECCEE
Confidence            9999999999999999999999999999999999999999999999976 589999999986 57789999999999999


Q ss_pred             EEEcChhHHH
Q psy13765        254 LYQGATDQLV  263 (606)
Q Consensus       254 ~~~G~~~~~~  263 (606)
                      +..|++.++.
T Consensus       226 ~~~~~~~~~~  235 (252)
T PRK14255        226 IEFADTKQMF  235 (252)
T ss_pred             EEeCCHHHHh
Confidence            9999988764

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.7e-38  Score=320.69  Aligned_cols=218  Identities=25%  Similarity=0.331  Sum_probs=172.6

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC----CccEEEECCccCC-
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG----VTGQILTNGHSRN-  102 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~----~~G~I~~~G~~~~-  102 (606)
                      .|+++||+++++        ++.+|+|+|++|++||+++|+||||||||||+++|+|+.++.    .+|+|.++|.+.. 
T Consensus         4 ~l~~~~l~~~~~--------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~   75 (251)
T PRK14249          4 KIKIRGVNFFYH--------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYS   75 (251)
T ss_pred             eEEEEEEEEEEC--------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccc
Confidence            588999999873        356999999999999999999999999999999999997753    2699999997642 


Q ss_pred             ----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH--HHHHHHHHHHhcCCc-c-cccCCCCCC
Q psy13765        103 ----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ--KKRLSIALELINNPR-V-MFLDEPTTS  174 (606)
Q Consensus       103 ----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq--rqRv~ia~~L~~~~~-~-~~~de~~~~  174 (606)
                          ...+++.++|++|++.+++. |+.+.+.. +.. .     .+.+..+  ++++.-+...+.-.+ + -.+|.+...
T Consensus        76 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~-~~~-~-----~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~  147 (251)
T PRK14249         76 PNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAF-GPR-M-----LGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLA  147 (251)
T ss_pred             cccChHHhhceEEEEecCCccCcC-cHHHHHhh-HHH-h-----cCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCccc
Confidence                23457789999999998875 87665542 111 0     0111111  223322222221100 1 146889999


Q ss_pred             CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765        175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL  254 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~  254 (606)
                      +|+|||||+.|||||+.+|++++|||||+|||+.++..+.++|++++ +|+|||+++|+++ .+.+.||++++|++|+++
T Consensus       148 LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~G~i~  225 (251)
T PRK14249        148 LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLTGDLV  225 (251)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeCCeEE
Confidence            99999999999999999999999999999999999999999999995 5899999999976 467899999999999999


Q ss_pred             EEcChhHHH
Q psy13765        255 YQGATDQLV  263 (606)
Q Consensus       255 ~~G~~~~~~  263 (606)
                      +.|+++++.
T Consensus       226 ~~~~~~~~~  234 (251)
T PRK14249        226 EYGRTGEIF  234 (251)
T ss_pred             EeCCHHHHH
Confidence            999988764

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.9e-38  Score=322.49  Aligned_cols=220  Identities=22%  Similarity=0.340  Sum_probs=174.8

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC----CccEEEECCccCC-
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG----VTGQILTNGHSRN-  102 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~----~~G~I~~~G~~~~-  102 (606)
                      .|+++|++++++        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++.    .+|+|.++|++.. 
T Consensus         7 ~l~~~nl~~~~~--------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~   78 (261)
T PRK14258          7 AIKVNNLSFYYD--------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYE   78 (261)
T ss_pred             eEEEeeEEEEeC--------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhc
Confidence            589999999873        346999999999999999999999999999999999998752    3799999997642 


Q ss_pred             ----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccC-ChHH-HHHHHHHHHHhcCCc-c-cccCCCCCC
Q psy13765        103 ----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQL-SGGQ-KKRLSIALELINNPR-V-MFLDEPTTS  174 (606)
Q Consensus       103 ----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~l-SgGq-rqRv~ia~~L~~~~~-~-~~~de~~~~  174 (606)
                          ...+++.++|++|++.+++ .|+.+.+... .. .     .+. ...+ ++++.-+.+.+.-.+ + -.++++...
T Consensus        79 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~-~~-~-----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~  150 (261)
T PRK14258         79 RRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYG-VK-I-----VGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALD  150 (261)
T ss_pred             cccchHHhhccEEEEecCCccCc-ccHHHHHHHH-HH-h-----cCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCccc
Confidence                1345678999999998888 7886655431 10 0     011 1112 223322222221100 0 146889999


Q ss_pred             CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecC---
Q psy13765        175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSG---  250 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~---  250 (606)
                      +|+|||||+.||++|+++|++|+|||||+|||+.++..+.+.|+++++ +|+|||+++|++. .+.++||++++|++   
T Consensus       151 LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~  229 (261)
T PRK14258        151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNEN  229 (261)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCC
Confidence            999999999999999999999999999999999999999999999876 4899999999986 57899999999999   


Q ss_pred             --CcEEEEcChhHHHH
Q psy13765        251 --GQCLYQGATDQLVN  264 (606)
Q Consensus       251 --G~~~~~G~~~~~~~  264 (606)
                        |++++.|+++++.+
T Consensus       230 ~~G~i~~~~~~~~~~~  245 (261)
T PRK14258        230 RIGQLVEFGLTKKIFN  245 (261)
T ss_pred             cCceEEEeCCHHHHHh
Confidence              99999999998743

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3e-38  Score=322.87  Aligned_cols=216  Identities=24%  Similarity=0.336  Sum_probs=172.5

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC----CccEEEECCccCC-
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG----VTGQILTNGHSRN-  102 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~----~~G~I~~~G~~~~-  102 (606)
                      .|+++|+++.|+        ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++.    .+|+|.++|++.. 
T Consensus         7 ~l~~~~l~~~~~--------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~   78 (259)
T PRK14260          7 AIKVKDLSFYYN--------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYD   78 (259)
T ss_pred             eEEEEEEEEEEC--------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccc
Confidence            589999999873        356999999999999999999999999999999999987642    4899999998652 


Q ss_pred             ----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc-----cccCCCC
Q psy13765        103 ----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV-----MFLDEPT  172 (606)
Q Consensus       103 ----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~-----~~~de~~  172 (606)
                          ...+++.++|++|++.+++ .|+.+.+... ... .    +..+..+ ++++   .+++....+     -.+|.+.
T Consensus        79 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~-~~~-~----~~~~~~~~~~~~---~~~l~~~~l~~~l~~~~~~~~  148 (259)
T PRK14260         79 PRININRLRRQIGMVFQRPNPFP-MSIYENVAYG-VRI-S----AKLPQADLDEIV---ESALKGAALWQEVKDKLNKSA  148 (259)
T ss_pred             cccchHhhhhheEEEecccccCC-ccHHHHHHHH-HHH-h----cCCCHHHHHHHH---HHHHHHcCCcchhhhHhcCCc
Confidence                1345678999999999888 7887665431 110 0    0112222 1222   122222111     1468888


Q ss_pred             CCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec---
Q psy13765        173 TSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS---  249 (606)
Q Consensus       173 ~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~---  249 (606)
                      ..+|+|||||+.||+||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.++||++++|+   
T Consensus       149 ~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~  226 (259)
T PRK14260        149 LGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDE  226 (259)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccC
Confidence            99999999999999999999999999999999999999999999999975 699999999987 5779999999997   


Q ss_pred             --CCcEEEEcChhHHH
Q psy13765        250 --GGQCLYQGATDQLV  263 (606)
Q Consensus       250 --~G~~~~~G~~~~~~  263 (606)
                        +|++++.|+++++.
T Consensus       227 ~~~G~i~~~~~~~~~~  242 (259)
T PRK14260        227 SRIGQMVEFGVTTQIF  242 (259)
T ss_pred             CCCceEEEeCCHHHHh
Confidence              59999999998874

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.5e-38  Score=324.57  Aligned_cols=219  Identities=22%  Similarity=0.274  Sum_probs=171.8

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--C--CCccEEEECCccCC
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS--N--GVTGQILTNGHSRN  102 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~--~--~~~G~I~~~G~~~~  102 (606)
                      ..++++|+++.|+        ++.+|+|+|++|++||+++|+|+||||||||+++|+|+.+  +  +.+|+|.++|++..
T Consensus        23 ~~l~~~~l~~~~~--------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~   94 (271)
T PRK14238         23 VVFDTQNLNLWYG--------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIF   94 (271)
T ss_pred             eEEEEeeeEEEEC--------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcc
Confidence            3699999999873        3569999999999999999999999999999999999875  2  26899999998652


Q ss_pred             -----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCCh-HH-HHHHHHHHHHhc-CCcc-cccCCCCC
Q psy13765        103 -----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSG-GQ-KKRLSIALELIN-NPRV-MFLDEPTT  173 (606)
Q Consensus       103 -----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSg-Gq-rqRv~ia~~L~~-~~~~-~~~de~~~  173 (606)
                           ...+++.++|++|++.+++. |+.+.+... .. .     .+.+. .. ++++.-+..... ..++ -.+|++..
T Consensus        95 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~-~~-~-----~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~  166 (271)
T PRK14238         95 DKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYG-PK-I-----HGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAY  166 (271)
T ss_pred             cccccHHHHhhhEEEEecCCccccc-cHHHHHHHH-HH-h-----cCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcc
Confidence                 23456789999999988874 886655431 10 0     01111 11 122211111000 0011 13578899


Q ss_pred             CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765        174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC  253 (606)
Q Consensus       174 ~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~  253 (606)
                      .+|+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.++||++++|++|++
T Consensus       167 ~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~G~i  244 (271)
T PRK14238        167 GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLNGYV  244 (271)
T ss_pred             cCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEE
Confidence            9999999999999999999999999999999999999999999999976 799999999976 46789999999999999


Q ss_pred             EEEcChhHHH
Q psy13765        254 LYQGATDQLV  263 (606)
Q Consensus       254 ~~~G~~~~~~  263 (606)
                      +..|+++++.
T Consensus       245 ~~~g~~~~~~  254 (271)
T PRK14238        245 NEYDDTDKIF  254 (271)
T ss_pred             EEeCCHHHHH
Confidence            9999988763

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-38  Score=354.49  Aligned_cols=221  Identities=21%  Similarity=0.305  Sum_probs=177.6

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---h
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---N  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~  104 (606)
                      .|+++|++++|        +++.+|+|+||++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++...   .
T Consensus         5 ~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p-~~G~i~~~g~~i~~~~~~   75 (510)
T PRK09700          5 YISMAGIGKSF--------GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP-TKGTITINNINYNKLDHK   75 (510)
T ss_pred             eEEEeeeEEEc--------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC-CccEEEECCEECCCCCHH
Confidence            58999999987        335799999999999999999999999999999999999876 59999999986532   1


Q ss_pred             h-hcccEEEEccCCCCCCCCcHHHHHHHcCCccccC-CccccCChH-HHHHHHHHHHHhcCCccc-ccCCCCCCCCchhh
Q psy13765        105 A-FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQN-TRSSQLSGG-QKKRLSIALELINNPRVM-FLDEPTTSNPNDQK  180 (606)
Q Consensus       105 ~-~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~-~~~~~lSgG-qrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~  180 (606)
                      . .++.++||+|++.+++.+|+.+.+.. +...... .....++.. .++|+.   +++..-.+- ..|.+...||||||
T Consensus        76 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~gl~~~~~~~~~~LSgG~~  151 (510)
T PRK09700         76 LAAQLGIGIIYQELSVIDELTVLENLYI-GRHLTKKVCGVNIIDWREMRVRAA---MMLLRVGLKVDLDEKVANLSISHK  151 (510)
T ss_pred             HHHHCCeEEEeecccccCCCcHHHHhhh-ccccccccccccccCHHHHHHHHH---HHHHHcCCCCCcccchhhCCHHHH
Confidence            1 34579999999999999999776642 2211100 000011221 223333   333332332 46889999999999


Q ss_pred             hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765        181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD  260 (606)
Q Consensus       181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~  260 (606)
                      |||.||+||+.+|++|+|||||+|||+.++..+.++|++++++|+|||++||++. .+..+||++++|++|++++.|+++
T Consensus       152 qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~G~i~~~g~~~  230 (510)
T PRK09700        152 QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKDGSSVCSGMVS  230 (510)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEeeecchh
Confidence            9999999999999999999999999999999999999999888999999999976 577899999999999999999987


Q ss_pred             HH
Q psy13765        261 QL  262 (606)
Q Consensus       261 ~~  262 (606)
                      ++
T Consensus       231 ~~  232 (510)
T PRK09700        231 DV  232 (510)
T ss_pred             hC
Confidence            64

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=100.00  E-value=3.7e-38  Score=320.80  Aligned_cols=201  Identities=22%  Similarity=0.410  Sum_probs=160.5

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhc
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR  107 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~  107 (606)
                      .++++||++.++        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|        +
T Consensus         4 ~l~~~~l~~~~~--------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p-~~G~i~~~~--------~   66 (251)
T PRK09544          4 LVSLENVSVSFG--------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP-DEGVIKRNG--------K   66 (251)
T ss_pred             EEEEeceEEEEC--------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECC--------c
Confidence            589999999873        35699999999999999999999999999999999999876 599999987        2


Q ss_pred             ccEEEEccCCCCCCCC--cHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHH
Q psy13765        108 RVSCYIQQDDRLQPLL--TIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLS  184 (606)
Q Consensus       108 ~~~~yv~Q~~~l~~~l--tv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~  184 (606)
                      ..++|++|++.+++.+  |+.+.+.   +..       ..+   ++++.-+.+.+   .+- ..|.+...+|+|||||+.
T Consensus        67 ~~i~~v~q~~~~~~~l~~~~~~~~~---~~~-------~~~---~~~~~~~l~~~---gl~~~~~~~~~~LSgGq~qrv~  130 (251)
T PRK09544         67 LRIGYVPQKLYLDTTLPLTVNRFLR---LRP-------GTK---KEDILPALKRV---QAGHLIDAPMQKLSGGETQRVL  130 (251)
T ss_pred             cCEEEeccccccccccChhHHHHHh---ccc-------ccc---HHHHHHHHHHc---CChHHHhCChhhCCHHHHHHHH
Confidence            4699999998887764  4433321   110       011   22222222222   221 356778888888888888


Q ss_pred             HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765        185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                      ||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+.+.||++++|++ +++..|+++++.
T Consensus       131 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~~-~i~~~g~~~~~~  208 (251)
T PRK09544        131 LARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLNH-HICCSGTPEVVS  208 (251)
T ss_pred             HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEECC-ceEeeCCHHHHh
Confidence            999999999999999999999999999999999999876 899999999987 57789999999964 799999988763

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-38  Score=343.79  Aligned_cols=202  Identities=29%  Similarity=0.447  Sum_probs=163.6

Q ss_pred             CCCCceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCcc-
Q psy13765         22 ETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-  100 (606)
Q Consensus        22 ~~~~~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~-  100 (606)
                      ...+++.++.+|+++.|++       ++++++|+|+++++|+.+||+|+||||||||+++|+|+.++ .+|+|.+||.+ 
T Consensus       314 ~~~~~~ei~~~~l~~~y~~-------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~-~~G~I~vng~~l  385 (559)
T COG4988         314 ANEPPIEISLENLSFRYPD-------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP-TQGEIRVNGIDL  385 (559)
T ss_pred             ccCCCceeeecceEEecCC-------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC-CCceEEECCccc
Confidence            3345678888899999853       24899999999999999999999999999999999999887 69999999975 


Q ss_pred             --CChhhhcccEEEEccCCCCCCCCcH---------------HHHHHHcCCccccC----------CccccCChHHHHHH
Q psy13765        101 --RNINAFRRVSCYIQQDDRLQPLLTI---------------ENVMSLLGLDESQN----------TRSSQLSGGQKKRL  153 (606)
Q Consensus       101 --~~~~~~~~~~~yv~Q~~~l~~~ltv---------------~~~l~~~gl~~~~~----------~~~~~lSgGqrqRv  153 (606)
                        .+...++++++||+|++.+++..--               .++++..|+.+..+          +...+|||||+|||
T Consensus       386 ~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRl  465 (559)
T COG4988         386 RDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRL  465 (559)
T ss_pred             cccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHH
Confidence              4557899999999999999875322               23344444433322          22334566665555


Q ss_pred             HHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q psy13765        154 SIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQ  233 (606)
Q Consensus       154 ~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~  233 (606)
                      +                              +||||+++++++++||||++||.++.+.+.+.|.+++++ +|++++||+
T Consensus       466 a------------------------------LARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHr  514 (559)
T COG4988         466 A------------------------------LARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHR  514 (559)
T ss_pred             H------------------------------HHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcC
Confidence            5                              555555559999999999999999999999999999874 999999999


Q ss_pred             CchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        234 PSATLFQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       234 ~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      +..  ..-+|+|++|++|+++..|.++++.+
T Consensus       515 l~~--~~~~D~I~vld~G~l~~~g~~~~L~~  543 (559)
T COG4988         515 LED--AADADRIVVLDNGRLVEQGTHEELSE  543 (559)
T ss_pred             hHH--HhcCCEEEEecCCceeccCCHHHHhh
Confidence            763  47899999999999999999999864

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-38  Score=320.41  Aligned_cols=206  Identities=22%  Similarity=0.370  Sum_probs=177.5

Q ss_pred             eEEEEEeeEEEEecCCc---------c-------cccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCC
Q psy13765         27 IEIKFKDLTYTVSTGLG---------F-------KQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGV   90 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~---------~-------~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~   90 (606)
                      ..|+++|+.+-+..+..         .       +.+...-++|+|++++.||+..|||-||||||||+++|.++..| .
T Consensus         3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep-t   81 (386)
T COG4175           3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP-T   81 (386)
T ss_pred             ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC-C
Confidence            56899999998864421         0       01223458999999999999999999999999999999999887 5


Q ss_pred             ccEEEECCccC---Ch---hhh-cccEEEEccCCCCCCCCcH----------------------HHHHHHcCCccccCCc
Q psy13765         91 TGQILTNGHSR---NI---NAF-RRVSCYIQQDDRLQPLLTI----------------------ENVMSLLGLDESQNTR  141 (606)
Q Consensus        91 ~G~I~~~G~~~---~~---~~~-~~~~~yv~Q~~~l~~~ltv----------------------~~~l~~~gl~~~~~~~  141 (606)
                      .|+|+++|.++   +.   .++ ++.++.|||+..|+|..||                      .+.++..||+.+.+++
T Consensus        82 ~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~y  161 (386)
T COG4175          82 RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKY  161 (386)
T ss_pred             CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcC
Confidence            99999999864   22   233 4679999999999999997                      4567788999999999


Q ss_pred             cccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy13765        142 SSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMIS  221 (606)
Q Consensus       142 ~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~  221 (606)
                      +.+|||||||||.+||||.++                              |+||++|||+|+|||--+.++.+-|.+|.
T Consensus       162 p~eLSGGMqQRVGLARAla~~------------------------------~~IlLMDEaFSALDPLIR~~mQdeLl~Lq  211 (386)
T COG4175         162 PNELSGGMQQRVGLARALAND------------------------------PDILLMDEAFSALDPLIRTEMQDELLELQ  211 (386)
T ss_pred             cccccchHHHHHHHHHHHccC------------------------------CCEEEecCchhhcChHHHHHHHHHHHHHH
Confidence            999999999999877776666                              99999999999999999999999999997


Q ss_pred             hC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        222 QQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       222 ~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      ++ ++|||++|||.+ +.+++-|||.+|++|+++..|+|+|++.
T Consensus       212 ~~l~KTIvFitHDLd-EAlriG~rIaimkdG~ivQ~Gtp~eIl~  254 (386)
T COG4175         212 AKLKKTIVFITHDLD-EALRIGDRIAIMKDGEIVQVGTPEEILL  254 (386)
T ss_pred             HHhCCeEEEEecCHH-HHHhccceEEEecCCeEEEeCCHHHHHc
Confidence            75 899999999987 4679999999999999999999999974

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=100.00  E-value=2.2e-38  Score=318.25  Aligned_cols=203  Identities=25%  Similarity=0.374  Sum_probs=162.0

Q ss_pred             cceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CccEEEECCccCChhhh-cccEEEEccCCC--CCCCCc
Q psy13765         51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG---VTGQILTNGHSRNINAF-RRVSCYIQQDDR--LQPLLT  124 (606)
Q Consensus        51 iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~---~~G~I~~~G~~~~~~~~-~~~~~yv~Q~~~--l~~~lt  124 (606)
                      +++|+|+++++||+++|+||||||||||+|+|+|+.++.   .+|+|.++|++...... ++.++|++|++.  +.+.+|
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t   80 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT   80 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence            589999999999999999999999999999999998762   58999999987643333 357999999985  566788


Q ss_pred             HHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc----cccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeC
Q psy13765        125 IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV----MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDE  200 (606)
Q Consensus       125 v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~----~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDE  200 (606)
                      +.+.+... ... .    +..+.-.++++.   +++..-++    -..|++...+|+||||||.||+||+++|++|+|||
T Consensus        81 ~~~~~~~~-~~~-~----~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDE  151 (230)
T TIGR02770        81 MGNHAIET-LRS-L----GKLSKQARALIL---EALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADE  151 (230)
T ss_pred             HHHHHHHH-HHH-c----CccHHHHHHHHH---HHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            86654321 100 0    011211233332   23332223    14678889999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765        201 PTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       201 PTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                      ||+|||+.++..+.+.|++++++ |+|||+++|+++ .+..++|++++|++|+++..|+++++.
T Consensus       152 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~  214 (230)
T TIGR02770       152 PTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF  214 (230)
T ss_pred             CccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            99999999999999999999875 899999999987 577899999999999999999988774

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=100.00  E-value=2.7e-38  Score=304.02  Aligned_cols=170  Identities=30%  Similarity=0.515  Sum_probs=146.7

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INA  105 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~  105 (606)
                      ++++|++++++.      .++.+++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..   ...
T Consensus         1 i~~~~l~~~~~~------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~   73 (173)
T cd03246           1 LEVENVSFRYPG------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP-TSGRVRLDGADISQWDPNE   73 (173)
T ss_pred             CEEEEEEEEcCC------CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCC-CCCeEEECCEEcccCCHHH
Confidence            468999998732      225699999999999999999999999999999999999876 5999999997643   345


Q ss_pred             hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI  185 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I  185 (606)
                      +++.++|++|++.+++. |+.+.+               ||||||||++||++|+.+                       
T Consensus        74 ~~~~i~~~~q~~~~~~~-tv~~~l---------------LS~G~~qrv~la~al~~~-----------------------  114 (173)
T cd03246          74 LGDHVGYLPQDDELFSG-SIAENI---------------LSGGQRQRLGLARALYGN-----------------------  114 (173)
T ss_pred             HHhheEEECCCCccccC-cHHHHC---------------cCHHHHHHHHHHHHHhcC-----------------------
Confidence            57789999999988874 876644               888888888876666666                       


Q ss_pred             HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765        186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC  253 (606)
Q Consensus       186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~  253 (606)
                             |++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+ +.||++++|++|++
T Consensus       115 -------p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i  173 (173)
T cd03246         115 -------PRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV  173 (173)
T ss_pred             -------CCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence                   9999999999999999999999999999878999999999986 45 68999999999974

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=2.3e-38  Score=344.00  Aligned_cols=226  Identities=23%  Similarity=0.357  Sum_probs=167.7

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CccEEEECCccC---
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG---VTGQILTNGHSR---  101 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~---~~G~I~~~G~~~---  101 (606)
                      .|+++||+++|...    .+...+++||||++++||++||+|.|||||||+.++|.|+.+++   .+|+|.++|++.   
T Consensus         5 lL~V~nL~v~~~~~----~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l   80 (539)
T COG1123           5 LLEVENLTVEFATD----GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGL   80 (539)
T ss_pred             eEEEeceEEEEecC----CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcC
Confidence            69999999998643    23357999999999999999999999999999999999998764   489999999753   


Q ss_pred             Ch---hh-hcccEEEEccCC--CCCCCCcHHHHHHHcCCccccCCccccCChHHHH-HHHHHHHHhcCCcccccCCCCCC
Q psy13765        102 NI---NA-FRRVSCYIQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKK-RLSIALELINNPRVMFLDEPTTS  174 (606)
Q Consensus       102 ~~---~~-~~~~~~yv~Q~~--~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrq-Rv~ia~~L~~~~~~~~~de~~~~  174 (606)
                      +.   .. ..+.++||||++  .+.|.+|+.+-+...-..|.      ..++-|.+ |+.-....+.-|+-.-.|.-+-.
T Consensus        81 ~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~------~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPhe  154 (539)
T COG1123          81 SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG------KGSRAEARKRAVELLEQVGLPDPERRDRYPHQ  154 (539)
T ss_pred             CHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhc------cccHHHHHHHHHHHHHHcCCCChhhhccCCcc
Confidence            22   12 236799999997  56777887443332111110      01122221 11111222222211111344445


Q ss_pred             CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765        175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQC  253 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~  253 (606)
                      +|||||||+.||+||+.+|++|++||||++||+.++.+|+++|+++.+ .|.++|++|||+. .+.++||||++|.+|++
T Consensus       155 LSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~~G~i  233 (539)
T COG1123         155 LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMYKGEI  233 (539)
T ss_pred             cCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEECCEE
Confidence            566666666677777777999999999999999999999999999986 4999999999987 57899999999999999


Q ss_pred             EEEcChhHHHH
Q psy13765        254 LYQGATDQLVN  264 (606)
Q Consensus       254 ~~~G~~~~~~~  264 (606)
                      ++.|+++++.+
T Consensus       234 VE~G~~~~i~~  244 (539)
T COG1123         234 VETGPTEEILS  244 (539)
T ss_pred             EEecCHHHHHh
Confidence            99999999976

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.4e-38  Score=322.01  Aligned_cols=218  Identities=23%  Similarity=0.294  Sum_probs=171.6

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccCC-
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSRN-  102 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~~-  102 (606)
                      .|+++||+++|+        ++++|+|+|++|++||+++|+||||||||||+|+|+|+..+    ..+|+|.++|++.. 
T Consensus        10 ~l~i~~v~~~~~--------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~   81 (264)
T PRK14243         10 VLRTENLNVYYG--------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYA   81 (264)
T ss_pred             EEEEeeeEEEEC--------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccc
Confidence            699999999872        35699999999999999999999999999999999998642    25899999997652 


Q ss_pred             ----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCC-cc-cccCCCCCCCC
Q psy13765        103 ----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNP-RV-MFLDEPTTSNP  176 (606)
Q Consensus       103 ----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~-~~-~~~de~~~~~s  176 (606)
                          ...+++.++|++|++.+++. |+.+.+.. +...  .    ....-.++++.-+.+.+.-. .+ -..+.+...+|
T Consensus        82 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~-~~~~--~----~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS  153 (264)
T PRK14243         82 PDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAY-GARI--N----GYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLS  153 (264)
T ss_pred             cccChHHHhhhEEEEccCCccccc-cHHHHHHh-hhhh--c----CcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCC
Confidence                23456789999999988874 87665532 1110  0    01111122222122221110 00 13578889999


Q ss_pred             chhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec-------
Q psy13765        177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS-------  249 (606)
Q Consensus       177 ~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~-------  249 (606)
                      +|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.++||++++|+       
T Consensus       154 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~  231 (264)
T PRK14243        154 GGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGG  231 (264)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEeccccccc
Confidence            9999999999999999999999999999999999999999999976 589999999976 5789999999998       


Q ss_pred             --CCcEEEEcChhHHH
Q psy13765        250 --GGQCLYQGATDQLV  263 (606)
Q Consensus       250 --~G~~~~~G~~~~~~  263 (606)
                        +|++++.|+++++.
T Consensus       232 ~~~g~i~~~~~~~~~~  247 (264)
T PRK14243        232 GRYGYLVEFDRTEKIF  247 (264)
T ss_pred             ccCceEEEeCCHHHHH
Confidence              79999999998875

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.6e-38  Score=324.95  Aligned_cols=219  Identities=21%  Similarity=0.284  Sum_probs=173.5

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--C--CCccEEEECCccCC
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS--N--GVTGQILTNGHSRN  102 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~--~--~~~G~I~~~G~~~~  102 (606)
                      ..|+++||++.|+        ++.+|+|+|++|++||+++|+||||||||||+++|+|+.+  +  ..+|+|.++|.+..
T Consensus        38 ~~l~~~~l~~~~~--------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~  109 (286)
T PRK14275         38 PHVVAKNFSIYYG--------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY  109 (286)
T ss_pred             eEEEEeeeEEEEC--------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhh
Confidence            4689999999873        3469999999999999999999999999999999999753  2  25899999997642


Q ss_pred             h-----hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCC-h-HHHHHHHHHHHHhcCC-cc-cccCCCCC
Q psy13765        103 I-----NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLS-G-GQKKRLSIALELINNP-RV-MFLDEPTT  173 (606)
Q Consensus       103 ~-----~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lS-g-GqrqRv~ia~~L~~~~-~~-~~~de~~~  173 (606)
                      .     ..+++.++|++|++.+++. |+.+.+.. +...      .++. . ..++++.-+.+.+.-. .+ -.+|.+..
T Consensus       110 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~-~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~  181 (286)
T PRK14275        110 GKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAY-GPRL------HGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNAL  181 (286)
T ss_pred             hcccchHHhhhcEEEECCCCCCCcc-CHHHHHHh-HHHh------cCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChh
Confidence            1     2356789999999988875 88776653 2110      0111 1 1233433222222110 01 14588899


Q ss_pred             CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765        174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC  253 (606)
Q Consensus       174 ~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~  253 (606)
                      .||||||||+.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||++++|++|++
T Consensus       182 ~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~G~i  259 (286)
T PRK14275        182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFYEGVL  259 (286)
T ss_pred             hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence            9999999999999999999999999999999999999999999999875 689999999987 46789999999999999


Q ss_pred             EEEcChhHHH
Q psy13765        254 LYQGATDQLV  263 (606)
Q Consensus       254 ~~~G~~~~~~  263 (606)
                      +..|+++++.
T Consensus       260 ~~~g~~~~~~  269 (286)
T PRK14275        260 VEHAPTAQLF  269 (286)
T ss_pred             EEeCCHHHHH
Confidence            9999988864

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=100.00  E-value=2.5e-38  Score=315.35  Aligned_cols=207  Identities=26%  Similarity=0.465  Sum_probs=159.6

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~  104 (606)
                      .++++|+++.++.      ..+.+++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..   ..
T Consensus         2 ~l~~~~l~~~~~~------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~   74 (220)
T cd03245           2 RIEFRNVSFSYPN------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP-TSGSVLLDGTDIRQLDPA   74 (220)
T ss_pred             eEEEEEEEEEcCC------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCCeEEECCEEhHHCCHH
Confidence            3789999998731      225699999999999999999999999999999999999876 5999999997642   23


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHH------Hhc-CCcc--cccCCCCCCC
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALE------LIN-NPRV--MFLDEPTTSN  175 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~------L~~-~~~~--~~~de~~~~~  175 (606)
                      ..++.++|++|++.+++ .|+.+.+... ...        .+   ++++.-..+      ++. .|.-  .-..++...+
T Consensus        75 ~~~~~i~~~~q~~~~~~-~tv~e~l~~~-~~~--------~~---~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~L  141 (220)
T cd03245          75 DLRRNIGYVPQDVTLFY-GTLRDNITLG-APL--------AD---DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGL  141 (220)
T ss_pred             HHHhhEEEeCCCCcccc-chHHHHhhcC-CCC--------CC---HHHHHHHHHHcCcHHHHHhccccccceecCCCccC
Confidence            45678999999998887 5876655331 110        01   112111111      111 1100  0012345689


Q ss_pred             CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765        176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY  255 (606)
Q Consensus       176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~  255 (606)
                      |||||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||++. .+ ++||++++|++|++++
T Consensus       142 SgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~  218 (220)
T cd03245         142 SGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIVA  218 (220)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEee
Confidence            999999999999999999999999999999999999999999999764 89999999986 34 7999999999999986


Q ss_pred             Ec
Q psy13765        256 QG  257 (606)
Q Consensus       256 ~G  257 (606)
                      .|
T Consensus       219 ~~  220 (220)
T cd03245         219 DG  220 (220)
T ss_pred             cC
Confidence            54

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=100.00  E-value=1.2e-37  Score=316.78  Aligned_cols=224  Identities=22%  Similarity=0.252  Sum_probs=170.3

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC--CCCCccEEEECCccCCh--
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR--SNGVTGQILTNGHSRNI--  103 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~--~~~~~G~I~~~G~~~~~--  103 (606)
                      .|+++||++.++        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.  ++ .+|+|.++|.+...  
T Consensus         7 ~l~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~-~~G~i~~~g~~~~~~~   77 (252)
T CHL00131          7 ILEIKNLHASVN--------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI-LEGDILFKGESILDLE   77 (252)
T ss_pred             eEEEEeEEEEeC--------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcC-CCceEEECCEEcccCC
Confidence            699999999873        346999999999999999999999999999999999973  34 68999999976432  


Q ss_pred             -hhhcc-cEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCC-CCCchh
Q psy13765        104 -NAFRR-VSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTT-SNPNDQ  179 (606)
Q Consensus       104 -~~~~~-~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~-~~s~g~  179 (606)
                       ...++ .++|++|++.+++.+|+.+.+...--..............+ ++++.-+.+.+.-++ ..+|.+.. .+||||
T Consensus        78 ~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LSgG~  156 (252)
T CHL00131         78 PEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP-SFLSRNVNEGFSGGE  156 (252)
T ss_pred             hhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch-hhhccccccCCCHHH
Confidence             22233 48899999999999998776543210000000001111111 233332222222110 13566665 599999


Q ss_pred             hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh-cceeeeecCCcEEEEcC
Q psy13765        180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQM-FDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~-~D~v~~L~~G~~~~~G~  258 (606)
                      |||+.||+||+.+|++++|||||+|||+.++..+.++|++++++|+|||++||+++. +... +|++++|++|++++.|+
T Consensus       157 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~~G~i~~~~~  235 (252)
T CHL00131        157 KKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQNGKIIKTGD  235 (252)
T ss_pred             HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEeCCEEEEecC
Confidence            999999999999999999999999999999999999999998779999999999764 5455 89999999999999999


Q ss_pred             hhHH
Q psy13765        259 TDQL  262 (606)
Q Consensus       259 ~~~~  262 (606)
                      ++.+
T Consensus       236 ~~~~  239 (252)
T CHL00131        236 AELA  239 (252)
T ss_pred             hhhh
Confidence            8843

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.7e-38  Score=319.65  Aligned_cols=219  Identities=26%  Similarity=0.330  Sum_probs=172.0

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--C--CccEEEECCccCC-
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN--G--VTGQILTNGHSRN-  102 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~--~--~~G~I~~~G~~~~-  102 (606)
                      .|+++|+++.++        ++.+|+|+|+++++||+++|+||||||||||+++|+|+..+  .  .+|+|.++|++.. 
T Consensus         6 ~i~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~   77 (253)
T PRK14261          6 ILSTKNLNLWYG--------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD   77 (253)
T ss_pred             eEEEeeeEEEEC--------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence            689999999873        35799999999999999999999999999999999998642  1  3799999998653 


Q ss_pred             ----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcC-Ccc-cccCCCCCCC
Q psy13765        103 ----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINN-PRV-MFLDEPTTSN  175 (606)
Q Consensus       103 ----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~-~~~-~~~de~~~~~  175 (606)
                          ....++.++|++|++.+++. |+.+.+.. +... .+.    ....+ ++++.-+.+.+.- +.+ -.+|++...+
T Consensus        78 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~-~~~~-~~~----~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L  150 (253)
T PRK14261         78 SGADVVALRRKIGMVFQRPNPFPK-SIYENVAY-GPRI-HGE----KNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSL  150 (253)
T ss_pred             cccchhhhhceEEEEecCCccCcc-cHHHHHHh-hHHh-cCC----CCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhC
Confidence                23456779999999998885 88776653 2110 010    11111 2232211111110 011 1368889999


Q ss_pred             CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765        176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY  255 (606)
Q Consensus       176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~  255 (606)
                      |+|||||+.||+||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.+|++++|++|+++.
T Consensus       151 S~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~G~i~~  228 (253)
T PRK14261        151 SGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYLGKLIE  228 (253)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999999976 589999999976 4678999999999999999


Q ss_pred             EcChhHHH
Q psy13765        256 QGATDQLV  263 (606)
Q Consensus       256 ~G~~~~~~  263 (606)
                      .|+++++.
T Consensus       229 ~g~~~~~~  236 (253)
T PRK14261        229 FDKTTQIF  236 (253)
T ss_pred             cCCHHHHH
Confidence            99998764

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=100.00  E-value=5.2e-38  Score=362.53  Aligned_cols=215  Identities=26%  Similarity=0.425  Sum_probs=167.4

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~  103 (606)
                      -.|+++||+|+|+.      .++++|+|+|++|++||.+||+||||||||||+|+|+|+++| .+|+|.+||.+.   +.
T Consensus       450 ~~I~~~nvsf~Y~~------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p-~~G~I~idg~~i~~~~~  522 (686)
T TIGR03797       450 GAIEVDRVTFRYRP------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP-ESGSVFYDGQDLAGLDV  522 (686)
T ss_pred             ceEEEEEEEEEcCC------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCEEEECCEEcCcCCH
Confidence            36999999999852      236799999999999999999999999999999999999887 599999999864   45


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHH----HHHHHHhcCCcc--cccCCCCCCCCc
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL----SIALELINNPRV--MFLDEPTTSNPN  177 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv----~ia~~L~~~~~~--~~~de~~~~~s~  177 (606)
                      +.+|+.+|||+|++.+++. |+.|.+.. +-.         .+-.+-.++    .+...+...|+=  ..++|....|||
T Consensus       523 ~~lr~~i~~v~Q~~~lf~g-TI~eNi~~-~~~---------~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSG  591 (686)
T TIGR03797       523 QAVRRQLGVVLQNGRLMSG-SIFENIAG-GAP---------LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSG  591 (686)
T ss_pred             HHHHhccEEEccCCccCcc-cHHHHHhc-CCC---------CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence            7789999999999999875 65444332 100         111111111    111111111211  123455567788


Q ss_pred             hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      |||||++|||||+++|++|+||||||+||+.++.++.+.|+++   ++|+|+++|+++.  .+.+|+|++|++|++++.|
T Consensus       592 GQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~--i~~~D~Iivl~~G~iv~~G  666 (686)
T TIGR03797       592 GQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLST--IRNADRIYVLDAGRVVQQG  666 (686)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHH--HHcCCEEEEEECCEEEEEC
Confidence            8888888888888889999999999999999999999999876   5899999999863  4779999999999999999


Q ss_pred             ChhHHHH
Q psy13765        258 ATDQLVN  264 (606)
Q Consensus       258 ~~~~~~~  264 (606)
                      +++++.+
T Consensus       667 ~~~~Ll~  673 (686)
T TIGR03797       667 TYDELMA  673 (686)
T ss_pred             CHHHHHh
Confidence            9998864

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=2.8e-38  Score=343.41  Aligned_cols=229  Identities=24%  Similarity=0.438  Sum_probs=183.2

Q ss_pred             ceEEEEEeeEEEEecCCcc---cccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC
Q psy13765         26 RIEIKFKDLTYTVSTGLGF---KQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN  102 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~---~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~  102 (606)
                      ...++++||++.|..+.+.   ..+...+++||||++++||++||+|+||||||||.++|+|+.+| .+|+|.++|.+.+
T Consensus       278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P-~~G~i~~~g~~~~  356 (539)
T COG1123         278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP-SSGSIIFDGQDLD  356 (539)
T ss_pred             CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEEeCcccc
Confidence            4468999999999753211   12446799999999999999999999999999999999999887 6999999997621


Q ss_pred             -----hhhhcccEEEEccCC--CCCCCCcHHHHHHH-cCCccccCCccccCChHHH-HHHHHHHHHhcCCcccccCCCCC
Q psy13765        103 -----INAFRRVSCYIQQDD--RLQPLLTIENVMSL-LGLDESQNTRSSQLSGGQK-KRLSIALELINNPRVMFLDEPTT  173 (606)
Q Consensus       103 -----~~~~~~~~~yv~Q~~--~l~~~ltv~~~l~~-~gl~~~~~~~~~~lSgGqr-qRv~ia~~L~~~~~~~~~de~~~  173 (606)
                           ....++.+-+|+||+  .+.|.+||.+++.. +....       ..++.++ +|+.-..+++.-|.- +++.-+.
T Consensus       357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~-------~~~~~~~~~rv~~ll~~VgL~~~-~l~ryP~  428 (539)
T COG1123         357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHG-------GGSGAERRARVAELLELVGLPPE-FLDRYPH  428 (539)
T ss_pred             cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhc-------ccchHHHHHHHHHHHHHcCCCHH-HHhcCch
Confidence                 234566788888876  58899999777654 22111       1223332 345544444443321 5677777


Q ss_pred             CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765        174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQ  252 (606)
Q Consensus       174 ~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~  252 (606)
                      .+|||||||++|||||+.+|++|++|||||.||+..+.+++++|+++.++ |.|.+++|||.. .+..+||||++|.+|+
T Consensus       429 elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~G~  507 (539)
T COG1123         429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYDGR  507 (539)
T ss_pred             hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEECCe
Confidence            88888999999999999999999999999999999999999999999886 999999999987 5889999999999999


Q ss_pred             EEEEcChhHHHH
Q psy13765        253 CLYQGATDQLVN  264 (606)
Q Consensus       253 ~~~~G~~~~~~~  264 (606)
                      +++.|+.+++.+
T Consensus       508 iVE~G~~~~v~~  519 (539)
T COG1123         508 IVEEGPTEKVFE  519 (539)
T ss_pred             EEEeCCHHHHhc
Confidence            999999888754

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=100.00  E-value=4e-38  Score=314.24  Aligned_cols=210  Identities=26%  Similarity=0.396  Sum_probs=165.8

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-----
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-----  103 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-----  103 (606)
                      ++++|+++.++.+    .+.+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...     
T Consensus         2 l~~~~l~~~~~~~----~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~   76 (220)
T TIGR02982         2 ISIRNLNHYYGHG----SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV-QEGSLKVLGQELYGASEKE   76 (220)
T ss_pred             EEEEEEEEEccCC----CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEhHhcCHhH
Confidence            6889999987421    1236799999999999999999999999999999999999876 59999999986531     


Q ss_pred             -hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhh
Q psy13765        104 -NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKK  181 (606)
Q Consensus       104 -~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~k  181 (606)
                       ...++.++|++|++.+++.+|+.+.+......   ..   ...  .++...-+.+++..-.+- ..+.+...+|+||||
T Consensus        77 ~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~---~~---~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~q  148 (220)
T TIGR02982        77 LVQLRRNIGYIFQAHNLLGFLTARQNVQMALEL---QP---NLS--YQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQ  148 (220)
T ss_pred             HHHHHhheEEEcCChhhcCCCCHHHHHHHHHHh---cc---CCC--HHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHH
Confidence             13567899999999999988987766542110   00   011  111111222333332332 457788889999999


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQC  253 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~  253 (606)
                      |+.||+||+++|++++|||||+|||+.++..+.+.|+++++ +|+|||+++|+++  +.+.||++++|++|++
T Consensus       149 rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~  219 (220)
T TIGR02982       149 RVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL  219 (220)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence            99999999999999999999999999999999999999986 4899999999975  3589999999999975

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=100.00  E-value=3.2e-38  Score=311.29  Aligned_cols=197  Identities=25%  Similarity=0.396  Sum_probs=156.5

Q ss_pred             EEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---h----
Q psy13765         31 FKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---I----  103 (606)
Q Consensus        31 ~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~----  103 (606)
                      ++||++.++        ++++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++..   .    
T Consensus         1 i~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~   71 (206)
T TIGR03608         1 LKNISKKFG--------DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF-DSGQVYLNGKETPPLNSKKAS   71 (206)
T ss_pred             CcceEEEEC--------CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEccccchhhHH
Confidence            368888762        35699999999999999999999999999999999999876 5999999998632   1    


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc-cccCCCCCCCCchhhh
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV-MFLDEPTTSNPNDQKK  181 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~k  181 (606)
                      ...++.++|++|++.+++..|+.+.+... ...      .+....+ ++++.   +++..-.+ -..|.+...+|+||||
T Consensus        72 ~~~~~~i~~~~q~~~~~~~~t~~e~~~~~-~~~------~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~lS~G~~q  141 (206)
T TIGR03608        72 KFRREKLGYLFQNFALIENETVEENLDLG-LKY------KKLSKKEKREKKK---EALEKVGLNLKLKQKIYELSGGEQQ  141 (206)
T ss_pred             HHHHhCeeEEecchhhccCCcHHHHHHHH-HHh------cCCCHHHHHHHHH---HHHHHcCchhhhcCChhhCCHHHHH
Confidence            13457899999999999989997765541 110      0111111 23332   23332222 1457888899999999


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeee
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL  248 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L  248 (606)
                      |+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|++. . .+.||++++|
T Consensus       142 r~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~-~~~~d~i~~l  206 (206)
T TIGR03608       142 RVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE-V-AKQADRVIEL  206 (206)
T ss_pred             HHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-H-HhhcCEEEeC
Confidence            999999999999999999999999999999999999999877999999999986 3 4689999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>KOG0057|consensus

Probab=100.00  E-value=1.8e-38  Score=338.82  Aligned_cols=207  Identities=25%  Similarity=0.440  Sum_probs=160.0

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~  103 (606)
                      -.|+|+||+++|.       .++++|+++||+|++||-+||+|+|||||||++|+|.++..  .+|+|++||+++   +.
T Consensus       350 ~~I~F~dV~f~y~-------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d--~sG~I~IdG~dik~~~~  420 (591)
T KOG0057|consen  350 GSIEFDDVHFSYG-------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD--YSGSILIDGQDIKEVSL  420 (591)
T ss_pred             CcEEEEeeEEEeC-------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc--cCCcEEECCeeHhhhCh
Confidence            3599999999984       23459999999999999999999999999999999999876  599999999864   45


Q ss_pred             hhhcccEEEEccCCCCCCCCcH------------HHH---HHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccccc
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTI------------ENV---MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFL  168 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv------------~~~---l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~  168 (606)
                      +.+|+.|||||||..+|.+.-.            +++   .+..|+.+...+.+++.    ...|               
T Consensus       421 ~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY----~T~V---------------  481 (591)
T KOG0057|consen  421 ESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGY----QTLV---------------  481 (591)
T ss_pred             HHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccc----hhhH---------------
Confidence            7889999999999998875321            333   33445544322222211    1100               


Q ss_pred             CCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeee
Q psy13765        169 DEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL  248 (606)
Q Consensus       169 de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L  248 (606)
                      .|....|||||||||+||||+++||+|+++|||||.||+.+..++++.+++ ...|+|+|++.|+.+  +...||+|+++
T Consensus       482 GerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~--ll~~~DkI~~l  558 (591)
T KOG0057|consen  482 GERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLD--LLKDFDKIIVL  558 (591)
T ss_pred             hhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecch--hHhcCCEEEEE
Confidence            122233444444444455555555999999999999999999999999998 345899999999976  45889999999


Q ss_pred             cCCcEEEEcChhHHHH
Q psy13765        249 SGGQCLYQGATDQLVN  264 (606)
Q Consensus       249 ~~G~~~~~G~~~~~~~  264 (606)
                      ++|++...|+.+|++.
T Consensus       559 ~nG~v~e~gth~ell~  574 (591)
T KOG0057|consen  559 DNGTVKEYGTHSELLA  574 (591)
T ss_pred             ECCeeEEeccHHHHhh
Confidence            9999999999999876

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=100.00  E-value=4.4e-38  Score=323.91  Aligned_cols=215  Identities=20%  Similarity=0.286  Sum_probs=166.1

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Chh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NIN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~  104 (606)
                      .|+++|++++|+.      +.+.+|+|+|++|++||+++|+||||||||||+++|+|+.+  .+|+|.++|.+.   +..
T Consensus         2 ~i~~~nls~~~~~------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~--~~G~I~i~g~~i~~~~~~   73 (275)
T cd03289           2 QMTVKDLTAKYTE------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGDIQIDGVSWNSVPLQ   73 (275)
T ss_pred             eEEEEEEEEEeCC------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEhhhCCHH
Confidence            4789999999842      23469999999999999999999999999999999999976  489999999864   335


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHH----HHHHHHhcCCcc--cccCCCCCCCCch
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL----SIALELINNPRV--MFLDEPTTSNPND  178 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv----~ia~~L~~~~~~--~~~de~~~~~s~g  178 (606)
                      .+++.++|++|++.+++. |+.+.+...+.          .+..+...+    .+...+-..|+=  ....|....+|+|
T Consensus        74 ~lr~~i~~v~q~~~lf~~-tv~~nl~~~~~----------~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G  142 (275)
T cd03289          74 KWRKAFGVIPQKVFIFSG-TFRKNLDPYGK----------WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHG  142 (275)
T ss_pred             HHhhhEEEECCCcccchh-hHHHHhhhccC----------CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHH
Confidence            667889999999999875 77655542221          111111111    111000011110  0122344568999


Q ss_pred             hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      ||||+.|||||+.+|+||+|||||+|||+.+...+.+.|+++. +++|||+++|+++ .+ ..|||+++|++|++++.|+
T Consensus       143 ~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri~vl~~G~i~~~g~  219 (275)
T cd03289         143 HKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRFLVIEENKVRQYDS  219 (275)
T ss_pred             HHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEEEEecCCeEeecCC
Confidence            9999999999999999999999999999999999999999875 4899999999985 45 4599999999999999999


Q ss_pred             hhHHHH
Q psy13765        259 TDQLVN  264 (606)
Q Consensus       259 ~~~~~~  264 (606)
                      ++++.+
T Consensus       220 ~~~l~~  225 (275)
T cd03289         220 IQKLLN  225 (275)
T ss_pred             HHHHhh
Confidence            999865

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=100.00  E-value=6.3e-38  Score=315.77  Aligned_cols=215  Identities=27%  Similarity=0.453  Sum_probs=167.9

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INA  105 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~  105 (606)
                      ++++|++++++       +.+.+++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.+||.+..   ...
T Consensus         1 l~~~~l~~~~~-------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-~~G~v~~~g~~~~~~~~~~   72 (236)
T cd03253           1 IEFENVTFAYD-------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV-SSGSILIDGQDIREVTLDS   72 (236)
T ss_pred             CEEEEEEEEeC-------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-CCCEEEECCEEhhhCCHHH
Confidence            46899999873       125699999999999999999999999999999999999876 5999999997642   345


Q ss_pred             hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH----HHHHHHHHHHhcCCc-c-cccCCCCCCCCchh
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ----KKRLSIALELINNPR-V-MFLDEPTTSNPNDQ  179 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq----rqRv~ia~~L~~~~~-~-~~~de~~~~~s~g~  179 (606)
                      +++.++|++|++.+++ .|+.+.+..... .        .+..+    .++..+...+-.-|+ + -.++.+...||+||
T Consensus        73 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-~--------~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~  142 (236)
T cd03253          73 LRRAIGVVPQDTVLFN-DTIGYNIRYGRP-D--------ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGE  142 (236)
T ss_pred             HHhhEEEECCCChhhc-chHHHHHhhcCC-C--------CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHH
Confidence            5678999999998886 587665543211 1        11111    111111111111111 1 13466778999999


Q ss_pred             hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765        180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT  259 (606)
Q Consensus       180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~  259 (606)
                      |||+.||+||+.+|++++|||||+|||+.+...+.+.|+++++ |+|||+++|++.. + ..||++++|++|+++..|++
T Consensus       143 ~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~-~-~~~d~~~~l~~g~i~~~~~~  219 (236)
T cd03253         143 KQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLST-I-VNADKIIVLKDGRIVERGTH  219 (236)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEeeCCH
Confidence            9999999999999999999999999999999999999999977 9999999999874 5 45999999999999999998


Q ss_pred             hHHHH
Q psy13765        260 DQLVN  264 (606)
Q Consensus       260 ~~~~~  264 (606)
                      +++.+
T Consensus       220 ~~~~~  224 (236)
T cd03253         220 EELLA  224 (236)
T ss_pred             HHHhh
Confidence            77643

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=100.00  E-value=4e-38  Score=304.13  Aligned_cols=176  Identities=28%  Similarity=0.516  Sum_probs=149.7

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--hhhh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--INAF  106 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--~~~~  106 (606)
                      |+++|++++++.      ..+.+++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..  ...+
T Consensus         1 i~~~~~~~~~~~------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~   73 (178)
T cd03247           1 LSINNVSFSYPE------QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGVPVSDLEKAL   73 (178)
T ss_pred             CEEEEEEEEeCC------CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCEEHHHHHHHH
Confidence            468999998732      124699999999999999999999999999999999999876 5999999997643  2345


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHH
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIA  186 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA  186 (606)
                      ++.++|++|++.+++ .|+.+.+            +..||||||||++||++++.+                        
T Consensus        74 ~~~i~~~~q~~~~~~-~tv~~~i------------~~~LS~G~~qrv~laral~~~------------------------  116 (178)
T cd03247          74 SSLISVLNQRPYLFD-TTLRNNL------------GRRFSGGERQRLALARILLQD------------------------  116 (178)
T ss_pred             HhhEEEEccCCeeec-ccHHHhh------------cccCCHHHHHHHHHHHHHhcC------------------------
Confidence            678999999998876 5776544            567888888888876666666                        


Q ss_pred             HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                            |++++|||||+|||+.++..+++.|++++ ++.|||+++|++.. + ..+|++++|++|++++.|
T Consensus       117 ------p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~~~~l~~g~i~~~~  178 (178)
T cd03247         117 ------APIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTG-I-EHMDKILFLENGKIIMQG  178 (178)
T ss_pred             ------CCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCEEEEEECCEEEecC
Confidence                  99999999999999999999999999985 58999999999874 5 579999999999998754

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=100.00  E-value=3.7e-38  Score=320.33  Aligned_cols=199  Identities=23%  Similarity=0.383  Sum_probs=161.4

Q ss_pred             cceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhhhcccEEEEccCCCCCCCCcHHH
Q psy13765         51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INAFRRVSCYIQQDDRLQPLLTIEN  127 (606)
Q Consensus        51 iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~~~~~~~yv~Q~~~l~~~ltv~~  127 (606)
                      +|+|+|+++++||+++|+||||||||||+++|+|+.+ . +|+|.++|++..   ....++.++|++|++.+++.+|+.+
T Consensus        11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~   88 (248)
T PRK03695         11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ   88 (248)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence            7999999999999999999999999999999999974 3 899999998653   2345567999999998888889877


Q ss_pred             HHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHHHHhhhc-------CCcEEEE
Q psy13765        128 VMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSIALELIN-------NPRVMFL  198 (606)
Q Consensus       128 ~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~IA~aL~~-------~P~lllL  198 (606)
                      .+......   .     .+.. .++++.   +++..-++- .+|.+...+|+|||||+.||+||+.       +|++|+|
T Consensus        89 nl~~~~~~---~-----~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llll  157 (248)
T PRK03695         89 YLTLHQPD---K-----TRTEAVASALN---EVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL  157 (248)
T ss_pred             HHHhcCcc---C-----CCcHHHHHHHH---HHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence            66542110   0     0111 123332   222222221 4578889999999999999999997       6799999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765        199 DEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       199 DEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                      ||||+|||+.++..+.++|++++++|+|||+++|+++ .+.++||++++|++|++++.|+++++.
T Consensus       158 DEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~  221 (248)
T PRK03695        158 DEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEVL  221 (248)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence            9999999999999999999999878999999999976 477899999999999999999987653

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=7.3e-38  Score=311.20  Aligned_cols=201  Identities=21%  Similarity=0.267  Sum_probs=162.8

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF  106 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~  106 (606)
                      ..++++|++++++        ++.+++++|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++......
T Consensus        10 ~~l~~~~l~~~~~--------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~i~~~~~   80 (214)
T PRK13543         10 PLLAAHALAFSRN--------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV-ESGQIQIDGKTATRGDR   80 (214)
T ss_pred             ceEEEeeEEEecC--------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC-CCeeEEECCEEccchhh
Confidence            3689999999862        35699999999999999999999999999999999999876 58999999987653334


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHc-CCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHH
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLL-GLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLS  184 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~-gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~  184 (606)
                      ++.++|++|++.+++.+|+.+.+... ++..        ..  ..+++   .+++..-++- .+|.+...+|+|||||+.
T Consensus        81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--------~~--~~~~~---~~~l~~~~l~~~~~~~~~~LS~G~~qrv~  147 (214)
T PRK13543         81 SRFMAYLGHLPGLKADLSTLENLHFLCGLHG--------RR--AKQMP---GSALAIVGLAGYEDTLVRQLSAGQKKRLA  147 (214)
T ss_pred             hhceEEeecCcccccCCcHHHHHHHHHHhcC--------Cc--HHHHH---HHHHHHcCChhhccCChhhCCHHHHHHHH
Confidence            56799999999999888886665432 1110        00  11222   2222222221 358888899999999999


Q ss_pred             HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765        185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG  250 (606)
Q Consensus       185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~  250 (606)
                      ||++++.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++. .+.++||++++++.
T Consensus       148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~~  212 (214)
T PRK13543        148 LARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLEA  212 (214)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEee
Confidence            999999999999999999999999999999999999888999999999987 57899999999863

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=100.00  E-value=2.6e-38  Score=317.81  Aligned_cols=199  Identities=25%  Similarity=0.350  Sum_probs=159.8

Q ss_pred             ceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHH
Q psy13765         52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSL  131 (606)
Q Consensus        52 L~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~  131 (606)
                      |+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++....  ....+|++|++.+++.+|+.+.+..
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~--~~~~~~v~q~~~l~~~~tv~e~l~~   77 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP-TSGGVILEGKQITEP--GPDRMVVFQNYSLLPWLTVRENIAL   77 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCCC--ChhheEEecCcccCCCCCHHHHHHH
Confidence            5899999999999999999999999999999999876 599999999875421  1234899999999999999777654


Q ss_pred             cCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHH
Q psy13765        132 LGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQS  209 (606)
Q Consensus       132 ~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~  209 (606)
                      . .....    ......+ ++++   .+++..-++- .+|.+...+|||||||+.||+||+.+|++|+|||||+|||+.+
T Consensus        78 ~-~~~~~----~~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~  149 (230)
T TIGR01184        78 A-VDRVL----PDLSKSERRAIV---EEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALT  149 (230)
T ss_pred             H-HHhcc----cCCCHHHHHHHH---HHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHH
Confidence            2 11000    0122222 2233   2333332332 4678889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765        210 CSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL  262 (606)
Q Consensus       210 ~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~  262 (606)
                      +..+.+.|++++++ |+|||++||+++ .+.++||++++|++|+++..|++.++
T Consensus       150 ~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~  202 (230)
T TIGR01184       150 RGNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILEV  202 (230)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCceec
Confidence            99999999999875 899999999987 57789999999999999998876543

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=100.00  E-value=4.9e-38  Score=314.82  Aligned_cols=210  Identities=19%  Similarity=0.303  Sum_probs=165.5

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---h
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---I  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~  103 (606)
                      ..|+++||++++.        ++++++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..   .
T Consensus         6 ~~i~~~~l~~~~~--------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~   76 (225)
T PRK10247          6 PLLQLQNVGYLAG--------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP-TSGTLLFEGEDISTLKP   76 (225)
T ss_pred             ceEEEeccEEeeC--------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-CCCeEEECCEEcCcCCH
Confidence            3689999999872        35799999999999999999999999999999999999776 5999999997643   2


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc--cccCCCCCCCCchhhh
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV--MFLDEPTTSNPNDQKK  181 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~--~~~de~~~~~s~g~~k  181 (606)
                      ..+++.++|++|++.+++. |+.+.+... .. ....     . .+++++.   +++..-++  -+.|.+...+|+||||
T Consensus        77 ~~~~~~i~~~~q~~~l~~~-tv~enl~~~-~~-~~~~-----~-~~~~~~~---~~l~~~~l~~~~~~~~~~~LS~G~~q  144 (225)
T PRK10247         77 EIYRQQVSYCAQTPTLFGD-TVYDNLIFP-WQ-IRNQ-----Q-PDPAIFL---DDLERFALPDTILTKNIAELSGGEKQ  144 (225)
T ss_pred             HHHHhccEEEecccccccc-cHHHHHHhH-Hh-hcCC-----C-hHHHHHH---HHHHHcCCChHHhcCCcccCCHHHHH
Confidence            3456789999999988875 886655421 00 0000     0 1233332   22322233  1468899999999999


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeec-CCcEEEEcCh
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLS-GGQCLYQGAT  259 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~-~G~~~~~G~~  259 (606)
                      |+.||+||+.+|++++|||||+|||+.++..+.+.|++++++ |.|||+++|+++. + +.||++++|+ ++..+.+|..
T Consensus       145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~~~~~~~~~~~~  222 (225)
T PRK10247        145 RISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQPHAGEMQEARY  222 (225)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEecccchHhhhhh
Confidence            999999999999999999999999999999999999999764 8999999999874 5 5799999995 5555555553

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=100.00  E-value=6.3e-38  Score=308.66  Aligned_cols=196  Identities=21%  Similarity=0.368  Sum_probs=159.8

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--hhhh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--INAF  106 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--~~~~  106 (606)
                      ++++||++.+        +++.+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..  ...+
T Consensus         1 l~i~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~   71 (201)
T cd03231           1 LEADELTCER--------DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP-LAGRVLLNGGPLDFQRDSI   71 (201)
T ss_pred             CEEEEEEEEe--------CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEecccccHHh
Confidence            4689999986        235799999999999999999999999999999999999876 5999999997643  2345


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHH
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIA  186 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA  186 (606)
                      ++.++|++|++.+++.+|+.+.+....-     .  .     ..+++.-+.+.+.-.+  ..|.+...+|+|||||+.||
T Consensus        72 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~-----~--~-----~~~~~~~~l~~~~l~~--~~~~~~~~LS~G~~qrl~la  137 (201)
T cd03231          72 ARGLLYLGHAPGIKTTLSVLENLRFWHA-----D--H-----SDEQVEEALARVGLNG--FEDRPVAQLSAGQQRRVALA  137 (201)
T ss_pred             hhheEEeccccccCCCcCHHHHHHhhcc-----c--c-----cHHHHHHHHHHcCChh--hhcCchhhCCHHHHHHHHHH
Confidence            6789999999999888998776654210     0  0     2333332222222111  35778888999999999999


Q ss_pred             HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeee
Q psy13765        187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL  248 (606)
Q Consensus       187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L  248 (606)
                      +||+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++.. +...+|+++++
T Consensus       138 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~-~~~~~~~~~~~  198 (201)
T cd03231         138 RLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLG-LSEAGARELDL  198 (201)
T ss_pred             HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchh-hhhccceeEec
Confidence            99999999999999999999999999999999998889999999999874 66899999887

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=8e-38  Score=303.21  Aligned_cols=172  Identities=24%  Similarity=0.476  Sum_probs=147.7

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----  103 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----  103 (606)
                      .++++|+++++            +++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++...    
T Consensus         4 ~l~~~~l~~~~------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~   70 (182)
T cd03215           4 VLEVRGLSVKG------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP-ASGEITLDGKPVTRRSPR   70 (182)
T ss_pred             EEEEeccEEEe------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCccCHH
Confidence            58899999863            89999999999999999999999999999999999876 59999999976532    


Q ss_pred             hhhcccEEEEccCC---CCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhh
Q psy13765        104 NAFRRVSCYIQQDD---RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQK  180 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~---~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~  180 (606)
                      ...++.++|++|++   .+++.+|+.+.+.....          ||||||||++||++|+.+                  
T Consensus        71 ~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------LS~G~~qrl~la~al~~~------------------  122 (182)
T cd03215          71 DAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------LSGGNQQKVVLARWLARD------------------  122 (182)
T ss_pred             HHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------cCHHHHHHHHHHHHHccC------------------
Confidence            23467899999995   57888898776643210          888888888866666666                  


Q ss_pred             hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765        181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC  253 (606)
Q Consensus       181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~  253 (606)
                                  |++++|||||+|||+.++..+.+.|++++++|+|+|+++|+++ .+.++||++++|++|++
T Consensus       123 ------------p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i  182 (182)
T cd03215         123 ------------PRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEGRI  182 (182)
T ss_pred             ------------CCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence                        9999999999999999999999999999877999999999976 57789999999999974

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=100.00  E-value=7.8e-38  Score=354.70  Aligned_cols=219  Identities=24%  Similarity=0.372  Sum_probs=169.2

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~  103 (606)
                      ..|+++||+|+|+.      +++++|+|+|++|++||.+||+||||||||||+|+|+|+.+| .+|+|.+||.+.   +.
T Consensus       340 ~~i~~~~vsf~y~~------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p-~~G~I~i~g~~i~~~~~  412 (582)
T PRK11176        340 GDIEFRNVTFTYPG------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI-DEGEILLDGHDLRDYTL  412 (582)
T ss_pred             CeEEEEEEEEecCC------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC-CCceEEECCEEhhhcCH
Confidence            36999999999842      236799999999999999999999999999999999999887 599999999864   34


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHH----HHHHHHhcCCcc--cccCCCCCCCCc
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL----SIALELINNPRV--MFLDEPTTSNPN  177 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv----~ia~~L~~~~~~--~~~de~~~~~s~  177 (606)
                      ..+++.++||+|++.+++. |+.+.+.. +..+       ..+..+-+.+    .+..-+-.-|+=  ...+|-...+||
T Consensus       413 ~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~-~~~~-------~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSG  483 (582)
T PRK11176        413 ASLRNQVALVSQNVHLFND-TIANNIAY-ARTE-------QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSG  483 (582)
T ss_pred             HHHHhhceEEccCceeecc-hHHHHHhc-CCCC-------CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCH
Confidence            6778999999999999875 66444422 2111       0111221111    111111111110  123344566888


Q ss_pred             hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      |||||++|||||+++|++|+||||||+||+.++..+++.|+++.+ ++|+|+++|+++  ..+.||+|++|++|++++.|
T Consensus       484 GqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i~e~g  560 (582)
T PRK11176        484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEKADEILVVEDGEIVERG  560 (582)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEeC
Confidence            888888888888888999999999999999999999999998754 799999999985  45789999999999999999


Q ss_pred             ChhHHHH
Q psy13765        258 ATDQLVN  264 (606)
Q Consensus       258 ~~~~~~~  264 (606)
                      +++++.+
T Consensus       561 ~~~~l~~  567 (582)
T PRK11176        561 THAELLA  567 (582)
T ss_pred             CHHHHHh
Confidence            9998864

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.4e-38  Score=337.67  Aligned_cols=205  Identities=26%  Similarity=0.453  Sum_probs=162.1

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Chh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NIN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~  104 (606)
                      .++++||+|+|+.      ++.++|+|+|+++++||.+||+|+||||||||+++|+|.+++ .+|+|.+||.+.   +.+
T Consensus       336 ~l~~~~vsF~y~~------~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~-~~G~i~~~g~~~~~l~~~  408 (573)
T COG4987         336 ALELRNVSFTYPG------QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP-QQGSITLNGVEIASLDEQ  408 (573)
T ss_pred             eeeeccceeecCC------CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCC-CCCeeeECCcChhhCChh
Confidence            7999999999863      345799999999999999999999999999999999999887 599999999764   345


Q ss_pred             hhcccEEEEccCCCCCCCCcH----------------HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc--
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTI----------------ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM--  166 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv----------------~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~--  166 (606)
                      .+++.+++++|..++|.. |+                .++++.+||++...                     ..|+=+  
T Consensus       409 ~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~---------------------~~p~gl~t  466 (573)
T COG4987         409 ALRETISVLTQRVHLFSG-TLRDNLRLANPDASDEELWAALQQVGLEKLLE---------------------SAPDGLNT  466 (573)
T ss_pred             hHHHHHhhhccchHHHHH-HHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHH---------------------hChhhhhc
Confidence            678899999999988764 33                22334444433222                     122111  


Q ss_pred             ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceee
Q psy13765        167 FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVY  246 (606)
Q Consensus       167 ~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~  246 (606)
                      -+||-...+|||||||+.|||+|++|.++++|||||.|||+.|.++++++|.+-.+ |+|+|++||+...  .+.||||+
T Consensus       467 ~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~--le~~drIi  543 (573)
T COG4987         467 WLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRG--LERMDRII  543 (573)
T ss_pred             hhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEeccccc--HhhcCEEE
Confidence            23444444555555555566666666999999999999999999999999987654 8999999999875  47899999


Q ss_pred             eecCCcEEEEcChhHHHH
Q psy13765        247 LLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       247 ~L~~G~~~~~G~~~~~~~  264 (606)
                      +|++|++++.|+++++.+
T Consensus       544 vl~~Gkiie~G~~~~Ll~  561 (573)
T COG4987         544 VLDNGKIIEEGTHAELLA  561 (573)
T ss_pred             EEECCeeeecCCHHhhhc
Confidence            999999999999999875

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=5.8e-39  Score=299.17  Aligned_cols=197  Identities=27%  Similarity=0.454  Sum_probs=165.1

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC-----
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR-----  101 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~-----  101 (606)
                      ..++++||.++|        +...+||+||++.+.|+++.|||.|||||||+|+||.=+..| ..|.|.+||+++     
T Consensus         5 ~~l~v~dlHK~~--------G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P-~~G~I~v~geei~~k~~   75 (256)
T COG4598           5 NALEVEDLHKRY--------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP-SAGSIRVNGEEIRLKRD   75 (256)
T ss_pred             cceehhHHHhhc--------ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCC-CCceEEECCeEEEeeeC
Confidence            368889998876        667899999999999999999999999999999999988777 599999999632     


Q ss_pred             --------Ch---hhhcccEEEEccCCCCCCCCcH-HH----------------------HHHHcCCccccCCccccCCh
Q psy13765        102 --------NI---NAFRRVSCYIQQDDRLQPLLTI-EN----------------------VMSLLGLDESQNTRSSQLSG  147 (606)
Q Consensus       102 --------~~---~~~~~~~~yv~Q~~~l~~~ltv-~~----------------------~l~~~gl~~~~~~~~~~lSg  147 (606)
                              +.   +.+|.+.|+|+|+.++++.+|+ ++                      .+...|+.+..+.++..|||
T Consensus        76 ~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSG  155 (256)
T COG4598          76 KDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSG  155 (256)
T ss_pred             CCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCc
Confidence                    11   3456678999999999999997 33                      34445555555555555666


Q ss_pred             HHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy13765        148 GQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTI  227 (606)
Q Consensus       148 GqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~ti  227 (606)
                      ||+||++                              |||||+.+|+++++|||||.|||+-.-++++.+++|+++|+|.
T Consensus       156 GQQQR~a------------------------------IARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTM  205 (256)
T COG4598         156 GQQQRVA------------------------------IARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTM  205 (256)
T ss_pred             hHHHHHH------------------------------HHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeE
Confidence            6665555                              5555566699999999999999999999999999999999999


Q ss_pred             EEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765        228 ICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       228 i~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                      +++||.+.. ..+...+|++|.+|.+-+.|+|+++.
T Consensus       206 v~VTHEM~F-AR~Vss~v~fLh~G~iEE~G~P~qvf  240 (256)
T COG4598         206 VVVTHEMGF-ARDVSSHVIFLHQGKIEEEGPPEQVF  240 (256)
T ss_pred             EEEeeehhH-HHhhhhheEEeecceecccCChHHHh
Confidence            999999874 67899999999999999999999885

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=1.3e-37  Score=353.71  Aligned_cols=216  Identities=25%  Similarity=0.334  Sum_probs=166.1

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~  103 (606)
                      ..++++|++|.|+.       ++++|+|+|+++++||.+||+|+||||||||+|+|+|+++| .+|+|.+||.+.   +.
T Consensus       339 ~~i~~~~v~f~y~~-------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p-~~G~I~idg~~i~~~~~  410 (592)
T PRK10790        339 GRIDIDNVSFAYRD-------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL-TEGEIRLDGRPLSSLSH  410 (592)
T ss_pred             CeEEEEEEEEEeCC-------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-CCceEEECCEEhhhCCH
Confidence            36999999999842       24699999999999999999999999999999999999887 599999999864   45


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHH----HHHHHhcCCcc--cccCCCCCCCCc
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLS----IALELINNPRV--MFLDEPTTSNPN  177 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~----ia~~L~~~~~~--~~~de~~~~~s~  177 (606)
                      +.+++.++||+|++.+++. |+.+.+....  +.        +-.+-.++.    +-..+-.-|+=  ...+|-...+||
T Consensus       411 ~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~--~~--------~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSG  479 (592)
T PRK10790        411 SVLRQGVAMVQQDPVVLAD-TFLANVTLGR--DI--------SEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSV  479 (592)
T ss_pred             HHHHhheEEEccCCccccc-hHHHHHHhCC--CC--------CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence            6789999999999999986 6544333211  10        111111111    00001111110  012344556777


Q ss_pred             hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      |||||++|||||+++|+||+||||||+||+.++..+.+.|+++.+ ++|+|+++|+++  ..+.||+|++|++|+++..|
T Consensus       480 GqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G  556 (592)
T PRK10790        480 GQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQG  556 (592)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEEc
Confidence            777777788888888999999999999999999999999998865 699999999985  35789999999999999999


Q ss_pred             ChhHHHH
Q psy13765        258 ATDQLVN  264 (606)
Q Consensus       258 ~~~~~~~  264 (606)
                      +++++.+
T Consensus       557 ~~~~L~~  563 (592)
T PRK10790        557 THQQLLA  563 (592)
T ss_pred             CHHHHHh
Confidence            9999864

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.1e-38  Score=356.41  Aligned_cols=225  Identities=22%  Similarity=0.289  Sum_probs=179.6

Q ss_pred             eEEEEEeeEEEEecCCc-cc--ccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh
Q psy13765         27 IEIKFKDLTYTVSTGLG-FK--QEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~-~~--~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~  103 (606)
                      ..|+++||++.|+.+.. +.  .+.+.+|+||||+|++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++...
T Consensus       312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p-~~G~I~~~g~~i~~  390 (623)
T PRK10261        312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES-QGGEIIFNGQRIDT  390 (623)
T ss_pred             ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-CCcEEEECCEECCc
Confidence            35999999999852100 00  0124699999999999999999999999999999999999876 59999999986431


Q ss_pred             ------hhhcccEEEEccCC--CCCCCCcHHHHHHH-cCCccccCCccccCChH-HHHHHHHHHHHhcCCcc--cccCCC
Q psy13765        104 ------NAFRRVSCYIQQDD--RLQPLLTIENVMSL-LGLDESQNTRSSQLSGG-QKKRLSIALELINNPRV--MFLDEP  171 (606)
Q Consensus       104 ------~~~~~~~~yv~Q~~--~l~~~ltv~~~l~~-~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~--~~~de~  171 (606)
                            ..+++.++||+|++  .+++.+|+.+.+.. +...   +    ..+.. .++++   .+++..-.+  -.++.+
T Consensus       391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~---~----~~~~~~~~~~~---~~~L~~~gL~~~~~~~~  460 (623)
T PRK10261        391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVH---G----LLPGKAAAARV---AWLLERVGLLPEHAWRY  460 (623)
T ss_pred             CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHc---C----CCCHHHHHHHH---HHHHHHcCCCHHHhhCC
Confidence                  23467899999997  58889999776653 1110   0    01111 22333   344443334  246888


Q ss_pred             CCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecC
Q psy13765        172 TTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSG  250 (606)
Q Consensus       172 ~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~  250 (606)
                      ...|||||||||.||+||+.+|++|||||||+|||+.++.++.++|++++++ |.|||++|||++ .+.++|||+++|++
T Consensus       461 ~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~  539 (623)
T PRK10261        461 PHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL  539 (623)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence            9999999999999999999999999999999999999999999999999875 899999999987 57789999999999


Q ss_pred             CcEEEEcChhHHH
Q psy13765        251 GQCLYQGATDQLV  263 (606)
Q Consensus       251 G~~~~~G~~~~~~  263 (606)
                      |++++.|+++++.
T Consensus       540 G~iv~~g~~~~i~  552 (623)
T PRK10261        540 GQIVEIGPRRAVF  552 (623)
T ss_pred             CEEEEecCHHHHh
Confidence            9999999998875

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=100.00  E-value=8.4e-38  Score=362.16  Aligned_cols=216  Identities=24%  Similarity=0.361  Sum_probs=168.8

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~  103 (606)
                      ..|+++||+|+|+.      .++++|+|+|++|++||.+||+||||||||||+|+|+|+++| .+|+|.+||.+.   +.
T Consensus       476 ~~I~~~~vsf~y~~------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p-~~G~I~idg~~i~~~~~  548 (710)
T TIGR03796       476 GYVELRNITFGYSP------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP-WSGEILFDGIPREEIPR  548 (710)
T ss_pred             CeEEEEEEEEecCC------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEeHHHCCH
Confidence            36999999999853      246799999999999999999999999999999999999887 599999999864   45


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHH----HHHHHhcCCcc--cccCCCCCCCCc
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLS----IALELINNPRV--MFLDEPTTSNPN  177 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~----ia~~L~~~~~~--~~~de~~~~~s~  177 (606)
                      ..+|+.++||+|++.+++. |+.|.+...+ .+        .+-.+-+++.    +-..+...|+=  ....|...+|||
T Consensus       549 ~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~-~~--------~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSG  618 (710)
T TIGR03796       549 EVLANSVAMVDQDIFLFEG-TVRDNLTLWD-PT--------IPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSG  618 (710)
T ss_pred             HHHHhheeEEecCChhhhc-cHHHHhhCCC-CC--------CCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCH
Confidence            6789999999999999875 6644443211 00        1111211111    11111112211  133455667888


Q ss_pred             hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      |||||++|||||+++|++|+||||||+||+.++.++.+.|++   .++|+|+++|+++.  .+.||+|++|++|++++.|
T Consensus       619 GQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~--i~~~D~Iivl~~G~i~~~G  693 (710)
T TIGR03796       619 GQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLST--IRDCDEIIVLERGKVVQRG  693 (710)
T ss_pred             HHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHH--HHhCCEEEEEeCCEEEEec
Confidence            888888888888888999999999999999999999999975   48999999999863  4779999999999999999


Q ss_pred             ChhHHHH
Q psy13765        258 ATDQLVN  264 (606)
Q Consensus       258 ~~~~~~~  264 (606)
                      +++++.+
T Consensus       694 ~~~~Ll~  700 (710)
T TIGR03796       694 THEELWA  700 (710)
T ss_pred             CHHHHHH
Confidence            9999875

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-37  Score=316.03  Aligned_cols=220  Identities=23%  Similarity=0.331  Sum_probs=172.7

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--C--CCccEEEECCccCC
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS--N--GVTGQILTNGHSRN  102 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~--~--~~~G~I~~~G~~~~  102 (606)
                      +.++++||++.++        ++.+|+|+|+++++||+++|+||||||||||+++|+|+..  +  ..+|+|.+||.+..
T Consensus         2 ~~l~~~~v~~~~~--------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~   73 (250)
T PRK14266          2 YRIEVENLNTYFD--------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIY   73 (250)
T ss_pred             cEEEEEeEEEEeC--------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcc
Confidence            4588999999872        3569999999999999999999999999999999999853  2  25899999998653


Q ss_pred             -----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCc-c-cccCCCCCC
Q psy13765        103 -----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPR-V-MFLDEPTTS  174 (606)
Q Consensus       103 -----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~-~-~~~de~~~~  174 (606)
                           ....++.++|++|++.+++. |+.+.+... ... .    +..+.. .++++.-+.+.+.-.+ + -.+|++...
T Consensus        74 ~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~-~~~-~----~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~  146 (250)
T PRK14266         74 DPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYG-LRI-H----GEDDEDFIEERVEESLKAAALWDEVKDKLDKSALG  146 (250)
T ss_pred             cccccHHHHhhheEEEecCCccCcc-hHHHHHHhH-Hhh-c----CCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCccc
Confidence                 23456789999999988885 776555421 110 0    001111 1233332222221100 0 135889999


Q ss_pred             CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765        175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL  254 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~  254 (606)
                      +|+|||||+.||+||+.+|++|+|||||+|||+.++..+.++|+++++ |.|||+++|++. .+...+|++++|++|+++
T Consensus       147 LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~G~i~  224 (250)
T PRK14266        147 LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLNGEII  224 (250)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEECCeEE
Confidence            999999999999999999999999999999999999999999999965 899999999986 577899999999999999


Q ss_pred             EEcChhHHH
Q psy13765        255 YQGATDQLV  263 (606)
Q Consensus       255 ~~G~~~~~~  263 (606)
                      +.|+++++.
T Consensus       225 ~~g~~~~~~  233 (250)
T PRK14266        225 ESGLTDQIF  233 (250)
T ss_pred             EeCCHHHHH
Confidence            999998874

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=100.00  E-value=8.4e-38  Score=353.40  Aligned_cols=217  Identities=28%  Similarity=0.457  Sum_probs=167.9

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~  103 (606)
                      -.|+++|++|.|+       +++++|+|+|+++++||.+||+||||||||||+|+|.|++++ .+|+|.+||.+.   +.
T Consensus       327 ~~I~f~~vsf~y~-------~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~-~~G~I~idg~dI~~i~~  398 (567)
T COG1132         327 GSIEFENVSFSYP-------GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP-TSGEILIDGIDIRDISL  398 (567)
T ss_pred             CeEEEEEEEEEcC-------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCeEEECCEehhhcCH
Confidence            4599999999984       246899999999999999999999999999999999999887 599999999764   56


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHH-HH--HHH-hcCCcc--cccCCCCCCCCc
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLS-IA--LEL-INNPRV--MFLDEPTTSNPN  177 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~-ia--~~L-~~~~~~--~~~de~~~~~s~  177 (606)
                      ..+|+.++||+||+.+|. -|+.+.+.. |..+        .|-.|-.+.+ .|  -+. .+-|+=  -...|-...+||
T Consensus       399 ~~lr~~I~~V~Qd~~LF~-~TI~~NI~~-g~~~--------at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSg  468 (567)
T COG1132         399 DSLRKRIGIVSQDPLLFS-GTIRENIAL-GRPD--------ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSG  468 (567)
T ss_pred             HHHHHhccEEcccceeec-ccHHHHHhc-CCCC--------CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCH
Confidence            788999999999999998 566443332 2111        1112211111 11  111 122321  123344555666


Q ss_pred             hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      |||||++||||++++|++|+||||||+||+.+...+.+.++++. +|+|+++++|+++. + +.+|+|++|++|++++.|
T Consensus       469 GQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst-i-~~aD~IiVl~~G~i~e~G  545 (567)
T COG1132         469 GQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST-I-KNADRIIVLDNGRIVERG  545 (567)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH-H-HhCCEEEEEECCEEEEec
Confidence            66666667777777799999999999999999999999999887 57899999999864 4 559999999999999999


Q ss_pred             ChhHHHH
Q psy13765        258 ATDQLVN  264 (606)
Q Consensus       258 ~~~~~~~  264 (606)
                      +++++.+
T Consensus       546 ~h~eLl~  552 (567)
T COG1132         546 THEELLA  552 (567)
T ss_pred             CHHHHHH
Confidence            9999876

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1.1e-37  Score=307.71  Aligned_cols=198  Identities=23%  Similarity=0.351  Sum_probs=158.7

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh--hhh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--NAF  106 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--~~~  106 (606)
                      ++++|++++++        .+++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...  ..+
T Consensus         2 l~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-~~G~v~~~g~~~~~~~~~~   72 (204)
T PRK13538          2 LEARNLACERD--------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP-DAGEVLWQGEPIRRQRDEY   72 (204)
T ss_pred             eEEEEEEEEEC--------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEEcccchHHh
Confidence            68899999873        35699999999999999999999999999999999999876 59999999986532  345


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHH
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSI  185 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~I  185 (606)
                      ++.++|++|++.+++.+|+.+.+.... . ..+    .   -.++++.   +++..-.+- ..|.+...+|+|||||+.|
T Consensus        73 ~~~~~~~~~~~~~~~~~tv~e~l~~~~-~-~~~----~---~~~~~~~---~~l~~~gl~~~~~~~~~~LS~G~~qrl~l  140 (204)
T PRK13538         73 HQDLLYLGHQPGIKTELTALENLRFYQ-R-LHG----P---GDDEALW---EALAQVGLAGFEDVPVRQLSAGQQRRVAL  140 (204)
T ss_pred             hhheEEeCCccccCcCCcHHHHHHHHH-H-hcC----c---cHHHHHH---HHHHHcCCHHHhhCChhhcCHHHHHHHHH
Confidence            678999999999999899977665421 0 000    0   1123332   222222221 4578888999999999999


Q ss_pred             HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeee
Q psy13765        186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL  248 (606)
Q Consensus       186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L  248 (606)
                      |+||+++|++++|||||+|||+.++..+.+.|++++++|.|||++||++. .+.+..+|++++
T Consensus       141 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~  202 (204)
T PRK13538        141 ARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL  202 (204)
T ss_pred             HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence            99999999999999999999999999999999999877899999999987 465666677666

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.2e-37  Score=316.90  Aligned_cols=221  Identities=22%  Similarity=0.253  Sum_probs=173.0

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccC
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSR  101 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~  101 (606)
                      ++.+.++++++.+        +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++    ..+|+|.++|++.
T Consensus         6 ~~~~~~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i   77 (261)
T PRK14263          6 PIVMDCKLDKIFY--------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDV   77 (261)
T ss_pred             CceEEEEeEEEEe--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEec
Confidence            4568889998876        346799999999999999999999999999999999999764    2589999999865


Q ss_pred             C-----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcC-Cccc-ccCCCCCC
Q psy13765        102 N-----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINN-PRVM-FLDEPTTS  174 (606)
Q Consensus       102 ~-----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~-~~~~-~~de~~~~  174 (606)
                      .     ...+++.++|++|++.++ .+|+.+.+... ....      ......+.++.-+.+.+.- +.+. ..+++...
T Consensus        78 ~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~-~~~~------~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~  149 (261)
T PRK14263         78 YGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFG-LRLN------RYKGDLGDRVKHALQGAALWDEVKDKLKVSGLS  149 (261)
T ss_pred             cccccchHhhhhceEEEecCCccc-cccHHHHHHHH-Hhhc------CchHHHHHHHHHHHHHcCCchhhhhhhhCCccc
Confidence            3     124567799999999887 47886655432 1100      0111112233222222221 1111 35678889


Q ss_pred             CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec-----
Q psy13765        175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS-----  249 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~-----  249 (606)
                      +|+|||||+.|||||+++|++|+|||||+|||+.++.++.+.|+++++ ++|||+++|+++ .+.++||++++|+     
T Consensus       150 LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~~~~  227 (261)
T PRK14263        150 LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVADTTAFFSVDISQ  227 (261)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEeccccc
Confidence            999999999999999999999999999999999999999999999964 799999999987 4778999999995     


Q ss_pred             ---CCcEEEEcChhHHHH
Q psy13765        250 ---GGQCLYQGATDQLVN  264 (606)
Q Consensus       250 ---~G~~~~~G~~~~~~~  264 (606)
                         +|++++.|+++++.+
T Consensus       228 ~~~~G~i~~~g~~~~~~~  245 (261)
T PRK14263        228 GTRTGYLVEMGPTAQIFQ  245 (261)
T ss_pred             ccCCceEEEeCCHHHHHh
Confidence               899999999988643

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=6.5e-38  Score=348.38  Aligned_cols=210  Identities=18%  Similarity=0.249  Sum_probs=162.0

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~  104 (606)
                      .|+++|++++|+        ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|.+..   ..
T Consensus         3 ~l~~~~l~~~~~--------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p-~~G~i~~~~~~~~~~~~~   73 (490)
T PRK10938          3 SLQISQGTFRLS--------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPL-LSGERQSQFSHITRLSFE   73 (490)
T ss_pred             eEEEEeEEEEcC--------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCceEEECCcccccCCHH
Confidence            489999999873        34699999999999999999999999999999999999876 5899999986542   23


Q ss_pred             hhcccEEEEccCCCCC---C-----CCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCC
Q psy13765        105 AFRRVSCYIQQDDRLQ---P-----LLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNP  176 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~---~-----~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s  176 (606)
                      ..++.++|++|++...   +     .+|+.+.+..              ....++|+.-+.+.+.-.+  .+|.+...+|
T Consensus        74 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~l~~--~~~~~~~~LS  137 (490)
T PRK10938         74 QLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQD--------------EVKDPARCEQLAQQFGITA--LLDRRFKYLS  137 (490)
T ss_pred             HHHHHhceeccCcchhhcccchhhccccHHHhccc--------------chhHHHHHHHHHHHcCCHh--hhhCCcccCC
Confidence            3456799999986531   1     2344332210              0012333332222222111  3466667777


Q ss_pred             chhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEE
Q psy13765        177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ  256 (606)
Q Consensus       177 ~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~  256 (606)
                      ||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++. .+.+.||++++|++|+++..
T Consensus       138 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~  216 (490)
T PRK10938        138 TGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLADCTLAET  216 (490)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEe
Confidence            77777777777777889999999999999999999999999999888999999999986 57789999999999999999


Q ss_pred             cChhHHH
Q psy13765        257 GATDQLV  263 (606)
Q Consensus       257 G~~~~~~  263 (606)
                      |+++++.
T Consensus       217 ~~~~~~~  223 (490)
T PRK10938        217 GEREEIL  223 (490)
T ss_pred             CCHHHHh
Confidence            9988754

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=100.00  E-value=1e-37  Score=311.15  Aligned_cols=210  Identities=23%  Similarity=0.335  Sum_probs=163.1

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~  104 (606)
                      .++++|++++++.      +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..   ..
T Consensus         2 ~l~~~~l~~~~~~------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~   74 (221)
T cd03244           2 DIEFKNVSLRYRP------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL-SSGSILIDGVDISKIGLH   74 (221)
T ss_pred             cEEEEEEEEecCC------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCEEhHhCCHH
Confidence            3789999998742      235799999999999999999999999999999999999776 5999999998642   34


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH----HHHHHHHHHHhcCC-cc-cccCCCCCCCCch
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ----KKRLSIALELINNP-RV-MFLDEPTTSNPND  178 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq----rqRv~ia~~L~~~~-~~-~~~de~~~~~s~g  178 (606)
                      .+++.++|++|++.+++ .|+.+.+....  .        .+-.+    .+++.+...+-..| .+ ...+++...+|+|
T Consensus        75 ~~~~~i~~~~q~~~l~~-~tv~enl~~~~--~--------~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G  143 (221)
T cd03244          75 DLRSRISIIPQDPVLFS-GTIRSNLDPFG--E--------YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVG  143 (221)
T ss_pred             HHhhhEEEECCCCcccc-chHHHHhCcCC--C--------CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHH
Confidence            56778999999998776 47766543211  0        01000    01111111111100 01 1246678899999


Q ss_pred             hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      ||||+.||+||+.+|++++|||||+|||+.++..+.+.|+++++ +.|||+++|++.. + ..||++++|++|++++.|+
T Consensus       144 ~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~i~~l~~g~~~~~~~  220 (221)
T cd03244         144 QRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDT-I-IDSDRILVLDKGRVVEFDS  220 (221)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-hhCCEEEEEECCeEEecCC
Confidence            99999999999999999999999999999999999999999865 6899999999864 5 4599999999999998876

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=100.00  E-value=2.6e-37  Score=315.65  Aligned_cols=221  Identities=21%  Similarity=0.270  Sum_probs=169.2

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---  102 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---  102 (606)
                      .-.|+++|++++++.      ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++..   
T Consensus        17 ~~~i~~~~l~~~~~~------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~i~g~~i~~~~   89 (257)
T cd03288          17 GGEIKIHDLCVRYEN------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI-FDGKIVIDGIDISKLP   89 (257)
T ss_pred             CceEEEEEEEEEeCC------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCC-CCCeEEECCEEhhhCC
Confidence            346999999999742      225699999999999999999999999999999999999876 5999999998653   


Q ss_pred             hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcC-C-cc-cccCCCCCCCCchh
Q psy13765        103 INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINN-P-RV-MFLDEPTTSNPNDQ  179 (606)
Q Consensus       103 ~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~-~-~~-~~~de~~~~~s~g~  179 (606)
                      ...+++.++|++|++.+++. |+.+.+.   .......  ... -...+++.+. .++.. | .+ -.++++...+|+||
T Consensus        90 ~~~~~~~i~~v~q~~~l~~~-tv~~nl~---~~~~~~~--~~~-~~~l~~~~l~-~~~~~~~~~l~~~~~~~~~~LS~G~  161 (257)
T cd03288          90 LHTLRSRLSIILQDPILFSG-SIRFNLD---PECKCTD--DRL-WEALEIAQLK-NMVKSLPGGLDAVVTEGGENFSVGQ  161 (257)
T ss_pred             HHHHhhhEEEECCCCccccc-HHHHhcC---cCCCCCH--HHH-HHHHHHhCcH-HHHhhcccccCcEeccCCCcCCHHH
Confidence            24567889999999988764 7654331   1110000  000 0000111111 11111 1 11 13567778899999


Q ss_pred             hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765        180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT  259 (606)
Q Consensus       180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~  259 (606)
                      |||+.||+||+++|++|+|||||+|||+.++..+.+.++++. ++.|||+++|++.. +. .|||+++|++|+++..|++
T Consensus       162 ~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~-~~-~~dri~~l~~G~i~~~g~~  238 (257)
T cd03288         162 RQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVST-IL-DADLVLVLSRGILVECDTP  238 (257)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHH-HH-hCCEEEEEECCEEEEeCCH
Confidence            999999999999999999999999999999999999999875 48999999999874 54 4999999999999999999


Q ss_pred             hHHHH
Q psy13765        260 DQLVN  264 (606)
Q Consensus       260 ~~~~~  264 (606)
                      +++.+
T Consensus       239 ~~~~~  243 (257)
T cd03288         239 ENLLA  243 (257)
T ss_pred             HHHHh
Confidence            87754

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-37  Score=317.14  Aligned_cols=220  Identities=25%  Similarity=0.390  Sum_probs=172.3

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECC------ccC
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG------HSR  101 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G------~~~  101 (606)
                      .++++|+++++        +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|      ++.
T Consensus        10 ~i~~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~-~~G~v~~~G~~~~~g~~~   80 (257)
T PRK14246         10 VFNISRLYLYI--------NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEI-YDSKIKVDGKVLYFGKDI   80 (257)
T ss_pred             heeeeeEEEec--------CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CcCceeEcCEEEECCccc
Confidence            58999999986        346799999999999999999999999999999999999776 465555554      433


Q ss_pred             ---ChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcC-Ccc-cccCCCCCCC
Q psy13765        102 ---NINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINN-PRV-MFLDEPTTSN  175 (606)
Q Consensus       102 ---~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~-~~~-~~~de~~~~~  175 (606)
                         +...+++.++|++|++.+++.+|+.+.+... ... .+    ....-+ ++++.-+.+.+.- +.+ -..|++...+
T Consensus        81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~-~~~-~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  154 (257)
T PRK14246         81 FQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYP-LKS-HG----IKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQL  154 (257)
T ss_pred             ccCCHHHHhcceEEEccCCccCCCCcHHHHHHHH-HHh-cC----CCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccC
Confidence               2234577899999999999999987766431 110 00    001111 2333323333221 110 1457888999


Q ss_pred             CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765        176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY  255 (606)
Q Consensus       176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~  255 (606)
                      |+|||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ +.|||+++|++. .+.+.||++++|++|+++.
T Consensus       155 S~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~g~i~~  232 (257)
T PRK14246        155 SGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYNGELVE  232 (257)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999999965 699999999976 5678999999999999999


Q ss_pred             EcChhHHHH
Q psy13765        256 QGATDQLVN  264 (606)
Q Consensus       256 ~G~~~~~~~  264 (606)
                      .|+++++.+
T Consensus       233 ~g~~~~~~~  241 (257)
T PRK14246        233 WGSSNEIFT  241 (257)
T ss_pred             ECCHHHHHh
Confidence            999887653

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=100.00  E-value=1.8e-37  Score=348.96  Aligned_cols=219  Identities=23%  Similarity=0.419  Sum_probs=175.0

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~  103 (606)
                      ..++++|++++|+.      +++++|+|+|+++++||.++|+||||||||||+|+|+|+.+| .+|+|.+||.+.   +.
T Consensus       315 ~~i~~~~v~~~y~~------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~i~~~~~  387 (544)
T TIGR01842       315 GHLSVENVTIVPPG------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPP-TSGSVRLDGADLKQWDR  387 (544)
T ss_pred             CeEEEEEEEEEcCC------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEehhhCCH
Confidence            36999999999842      235799999999999999999999999999999999999876 599999999864   34


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHH----HHHHHHHHHhcCCc--ccccCCCCCCCCc
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQK----KRLSIALELINNPR--VMFLDEPTTSNPN  177 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqr----qRv~ia~~L~~~~~--~~~~de~~~~~s~  177 (606)
                      ..+++.++||+|++.+++. |+.+.+...+ .+        .+-.+-    +++.+...+-.-|+  --..+|....+||
T Consensus       388 ~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~-~~--------~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSg  457 (544)
T TIGR01842       388 ETFGKHIGYLPQDVELFPG-TVAENIARFG-EN--------ADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSG  457 (544)
T ss_pred             HHHhhheEEecCCcccccc-cHHHHHhccC-CC--------CCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCH
Confidence            5678899999999999986 7765554222 11        121121    11111111111121  1245677888999


Q ss_pred             hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      |||||++|||||+++|++|+|||||+|||+.++..+.+.|+++.++|+|+|+++|+++  ..+.||++++|++|++++.|
T Consensus       458 Gq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g  535 (544)
T TIGR01842       458 GQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFG  535 (544)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeC
Confidence            9999999999999999999999999999999999999999998767899999999986  34789999999999999999


Q ss_pred             ChhHHHH
Q psy13765        258 ATDQLVN  264 (606)
Q Consensus       258 ~~~~~~~  264 (606)
                      +++++.+
T Consensus       536 ~~~~l~~  542 (544)
T TIGR01842       536 ERDEVLA  542 (544)
T ss_pred             CHHHHhh
Confidence            9988753

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=1.3e-37  Score=296.64  Aligned_cols=158  Identities=28%  Similarity=0.476  Sum_probs=139.5

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----h
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----N  104 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----~  104 (606)
                      |+++|++++|+        ++++++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...    .
T Consensus         1 l~~~~l~~~~~--------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~   71 (163)
T cd03216           1 LELRGITKRFG--------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKP-DSGEILVDGKEVSFASPRD   71 (163)
T ss_pred             CEEEEEEEEEC--------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEECCcCCHHH
Confidence            46899999873        34699999999999999999999999999999999999876 59999999986532    2


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS  184 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~  184 (606)
                      ..++.++|++|                             ||||||||+++|++|+.+                      
T Consensus        72 ~~~~~i~~~~q-----------------------------LS~G~~qrl~laral~~~----------------------  100 (163)
T cd03216          72 ARRAGIAMVYQ-----------------------------LSVGERQMVEIARALARN----------------------  100 (163)
T ss_pred             HHhcCeEEEEe-----------------------------cCHHHHHHHHHHHHHhcC----------------------
Confidence            34667999999                             899999888877766666                      


Q ss_pred             HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765        185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY  255 (606)
Q Consensus       185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~  255 (606)
                              |++++|||||+|||+.++..+.+.|++++++|.|+|+++|++. .+.+.||++++|++|++++
T Consensus       101 --------p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~  162 (163)
T cd03216         101 --------ARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRDGRVVG  162 (163)
T ss_pred             --------CCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence                    9999999999999999999999999999877999999999976 4678899999999999875

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.2e-37  Score=316.33  Aligned_cols=221  Identities=23%  Similarity=0.292  Sum_probs=174.6

Q ss_pred             CceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC-C---CccEEEECCcc
Q psy13765         25 DRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN-G---VTGQILTNGHS  100 (606)
Q Consensus        25 ~~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~-~---~~G~I~~~G~~  100 (606)
                      ++..|+++|++++++        ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ +   .+|+|.++|.+
T Consensus        13 ~~~~l~~~~l~~~~~--------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~   84 (265)
T PRK14252         13 TQQKSEVNKLNFYYG--------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDN   84 (265)
T ss_pred             CCceEEEEEEEEEEC--------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcc
Confidence            345699999999873        35799999999999999999999999999999999998753 1   58999999975


Q ss_pred             CC-------hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH--HHHHHHHHHHhcCC-cc-cccC
Q psy13765        101 RN-------INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ--KKRLSIALELINNP-RV-MFLD  169 (606)
Q Consensus       101 ~~-------~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq--rqRv~ia~~L~~~~-~~-~~~d  169 (606)
                      .+       ...+++.++|++|++.+++. |+.+.+.. +...      ..+...+  ++++.-+.+.+.-. .+ -..|
T Consensus        85 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~-~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~  156 (265)
T PRK14252         85 VNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAY-GLRI------RGVKRRSILEERVENALRNAALWDEVKDRLG  156 (265)
T ss_pred             ccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHh-HHHH------cCCChHHHHHHHHHHHHHHcCCchhhhHHHh
Confidence            42       13456789999999998886 88665542 1110      0111111  23333232222211 11 1457


Q ss_pred             CCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec
Q psy13765        170 EPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS  249 (606)
Q Consensus       170 e~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~  249 (606)
                      ++...+|+|||||+.||+||+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.++||++++|+
T Consensus       157 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~  234 (265)
T PRK14252        157 DLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMY  234 (265)
T ss_pred             CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEE
Confidence            88899999999999999999999999999999999999999999999999976 689999999976 5778999999999


Q ss_pred             CCcEEEEcChhHHH
Q psy13765        250 GGQCLYQGATDQLV  263 (606)
Q Consensus       250 ~G~~~~~G~~~~~~  263 (606)
                      +|+++..|+.+++.
T Consensus       235 ~G~i~~~g~~~~~~  248 (265)
T PRK14252        235 MGELIEFGATDTIF  248 (265)
T ss_pred             CCEEEEeCCHHHHH
Confidence            99999999988764

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.7e-38  Score=347.40  Aligned_cols=215  Identities=20%  Similarity=0.323  Sum_probs=173.3

Q ss_pred             EEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----hhh
Q psy13765         31 FKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----NAF  106 (606)
Q Consensus        31 ~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----~~~  106 (606)
                      ++|++++|        +++++|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++...    ...
T Consensus         1 ~~nl~~~~--------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~   71 (491)
T PRK10982          1 MSNISKSF--------PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK-DSGSILFQGKEIDFKSSKEAL   71 (491)
T ss_pred             CCceEEEe--------CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCEECCCCCHHHHH
Confidence            36888876        235799999999999999999999999999999999999876 59999999986532    234


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHH
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLS  184 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~  184 (606)
                      ++.++||+|++.+++.+|+.+.+.. +.....+.   ..+.. +++++.   +++..-.+- ..|.+...|||||||||.
T Consensus        72 ~~~i~~v~q~~~~~~~~tv~~~l~~-~~~~~~~~---~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LSgGq~qrv~  144 (491)
T PRK10982         72 ENGISMVHQELNLVLQRSVMDNMWL-GRYPTKGM---FVDQDKMYRDTK---AIFDELDIDIDPRAKVATLSVSQMQMIE  144 (491)
T ss_pred             hCCEEEEecccccccCCCHHHHhhc-cccccccc---ccCHHHHHHHHH---HHHHHcCCCCCccCchhhCCHHHHHHHH
Confidence            5679999999999999999776643 21111000   01211 123333   333332332 468889999999999999


Q ss_pred             HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765        185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL  262 (606)
Q Consensus       185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~  262 (606)
                      ||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.++||++++|++|+++..|+++++
T Consensus       145 lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~  221 (491)
T PRK10982        145 IAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAGL  221 (491)
T ss_pred             HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence            999999999999999999999999999999999999888999999999976 57789999999999999999987664

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=1.5e-37  Score=351.60  Aligned_cols=217  Identities=26%  Similarity=0.479  Sum_probs=169.4

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~  103 (606)
                      ..|+++|++|+|+.      +++++|+|+|+++++||.+||+||||||||||+|+|+|+.++ .+|+|.+||.+.   +.
T Consensus       337 ~~i~~~~v~f~y~~------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p-~~G~I~i~g~~i~~~~~  409 (574)
T PRK11160        337 VSLTLNNVSFTYPD------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP-QQGEILLNGQPIADYSE  409 (574)
T ss_pred             CeEEEEEEEEECCC------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEEhhhCCH
Confidence            46999999999842      235699999999999999999999999999999999999877 599999999864   45


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHH----HHHHHHHHhcCCccc--ccCCCCCCCCc
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKK----RLSIALELINNPRVM--FLDEPTTSNPN  177 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrq----Rv~ia~~L~~~~~~~--~~de~~~~~s~  177 (606)
                      ..+|+.++||+|++.+++. |+.|.+.... .        +.+--+-.    ++.+.. .+.+|+=+  ..+|....+||
T Consensus       410 ~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~-~--------~~~~~~i~~al~~~~l~~-~i~~p~GldT~vge~g~~LSg  478 (574)
T PRK11160        410 AALRQAISVVSQRVHLFSA-TLRDNLLLAA-P--------NASDEALIEVLQQVGLEK-LLEDDKGLNAWLGEGGRQLSG  478 (574)
T ss_pred             HHHHhheeEEcccchhhcc-cHHHHhhcCC-C--------ccCHHHHHHHHHHcCCHH-HHcCccccCchhcCCCCCCCH
Confidence            6788999999999999875 6654433211 0        11111111    111111 11112211  23455667888


Q ss_pred             hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      |||||++|||||+++|++|+|||||++||+.++..+.+.|+++. +++|+|+++|+++. + +.||++++|++|++++.|
T Consensus       479 GqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~-~-~~~d~i~~l~~G~i~~~g  555 (574)
T PRK11160        479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG-L-EQFDRICVMDNGQIIEQG  555 (574)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH-H-HhCCEEEEEeCCeEEEeC
Confidence            88888888888888899999999999999999999999999886 48999999999874 4 679999999999999999


Q ss_pred             ChhHHHH
Q psy13765        258 ATDQLVN  264 (606)
Q Consensus       258 ~~~~~~~  264 (606)
                      +++++.+
T Consensus       556 ~~~~l~~  562 (574)
T PRK11160        556 THQELLA  562 (574)
T ss_pred             CHHHHHh
Confidence            9998864

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=100.00  E-value=1.7e-37  Score=358.76  Aligned_cols=219  Identities=26%  Similarity=0.429  Sum_probs=170.2

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~  103 (606)
                      -.|+++||+|+|+.      +++++|+|+|++|++||.+||+||||||||||+|+|+|+++| .+|+|.+||.+.   +.
T Consensus       462 ~~I~~~~vsf~Y~~------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p-~~G~I~idg~~l~~~~~  534 (694)
T TIGR03375       462 GEIEFRNVSFAYPG------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP-TEGSVLLDGVDIRQIDP  534 (694)
T ss_pred             ceEEEEEEEEEeCC------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEEhhhCCH
Confidence            36999999999852      345799999999999999999999999999999999999887 599999999864   45


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHH----HHHHHHhcCCcc--cccCCCCCCCCc
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL----SIALELINNPRV--MFLDEPTTSNPN  177 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv----~ia~~L~~~~~~--~~~de~~~~~s~  177 (606)
                      ..+|+.++||+|++.+++. |+.|.+.. +-.+        .+--+-..+    .+...+-..|+=  -..+|....+||
T Consensus       535 ~~lr~~i~~v~Q~~~lf~~-TI~eNi~~-~~~~--------~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSg  604 (694)
T TIGR03375       535 ADLRRNIGYVPQDPRLFYG-TLRDNIAL-GAPY--------ADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSG  604 (694)
T ss_pred             HHHHhccEEECCChhhhhh-hHHHHHhC-CCCC--------CCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCH
Confidence            6789999999999999875 66544432 1100        111111111    111111112211  133455666777


Q ss_pred             hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      |||||++|||||+++|++++||||||+||+.++..+.+.|+++.+ ++|+|+++|+++.  .+.||+|++|++|++++.|
T Consensus       605 GQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~~--~~~~D~iivl~~G~i~e~G  681 (694)
T TIGR03375       605 GQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTSL--LDLVDRIIVMDNGRIVADG  681 (694)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHH--HHhCCEEEEEeCCEEEeeC
Confidence            777777888888888999999999999999999999999998864 7999999999863  4789999999999999999


Q ss_pred             ChhHHHHH
Q psy13765        258 ATDQLVNY  265 (606)
Q Consensus       258 ~~~~~~~~  265 (606)
                      +++++.+.
T Consensus       682 ~~~eLl~~  689 (694)
T TIGR03375       682 PKDQVLEA  689 (694)
T ss_pred             CHHHHHHH
Confidence            99998763

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.6e-37  Score=325.93  Aligned_cols=221  Identities=22%  Similarity=0.293  Sum_probs=174.9

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccCC
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSRN  102 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~~  102 (606)
                      ..|+++|++++|..      +.+.+|+|+|++|++||+++|+||||||||||+++|+|+..+    +.+|+|.++|.+..
T Consensus        79 ~~i~~~nls~~y~~------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~  152 (329)
T PRK14257         79 NVFEIRNFNFWYMN------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR  152 (329)
T ss_pred             ceEEEEeeEEEecC------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence            46899999999842      235699999999999999999999999999999999998642    24899999998763


Q ss_pred             -----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCC----cc-cccCCCC
Q psy13765        103 -----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNP----RV-MFLDEPT  172 (606)
Q Consensus       103 -----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~----~~-~~~de~~  172 (606)
                           ...+++.++||||++.+++ .|+.+.+.. +..  .+    +.+..+. .-..+.+.+...    ++ -..++..
T Consensus       153 ~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~-~~~--~~----~~~~~~~-~~~~~~~~l~~~~L~~~l~~~~~~~~  223 (329)
T PRK14257        153 SKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAY-GPR--NN----GINDRKI-LEKIVEKSLKSAALWDEVKDDLDKAG  223 (329)
T ss_pred             ccccchHhhhccEEEEecCCccCC-CcHHHHHHh-HHH--hc----CCChHHH-HHHHHHHHHHHcCCcchhhhhhhCCc
Confidence                 1356788999999999886 687555542 211  01    1222221 111111222111    11 1468899


Q ss_pred             CCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765        173 TSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ  252 (606)
Q Consensus       173 ~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~  252 (606)
                      ..+|||||||+.|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||+++|++. .+.+.|||+++|++|+
T Consensus       224 ~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~G~  301 (329)
T PRK14257        224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQGW  301 (329)
T ss_pred             ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence            99999999999999999999999999999999999999999999999876 699999999987 4678899999999999


Q ss_pred             EEEEcChhHHHH
Q psy13765        253 CLYQGATDQLVN  264 (606)
Q Consensus       253 ~~~~G~~~~~~~  264 (606)
                      +++.|+++++..
T Consensus       302 i~e~g~~~~l~~  313 (329)
T PRK14257        302 IEEAGETKTIFI  313 (329)
T ss_pred             EEEeCCHHHHhc
Confidence            999999999853

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-37  Score=346.05  Aligned_cols=216  Identities=25%  Similarity=0.348  Sum_probs=174.0

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----  103 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----  103 (606)
                      .|+++||+++|+        ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++...    
T Consensus         4 ~l~~~~l~~~~~--------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~I~~~g~~i~~~~~~   74 (501)
T PRK11288          4 YLSFDGIGKTFP--------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP-DAGSILIDGQEMRFASTT   74 (501)
T ss_pred             eEEEeeeEEEEC--------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCCEEEECCEECCCCCHH
Confidence            589999999872        35699999999999999999999999999999999999876 59999999986531    


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCCh-HHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhH
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSG-GQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKR  182 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSg-GqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~kr  182 (606)
                      ..+++.++||+|++.+++.+|+.+.+........ .   +.... -+++++.-+.+.+.-.  -..|.+...||||||||
T Consensus        75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~-~---~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qr  148 (501)
T PRK11288         75 AALAAGVAIIYQELHLVPEMTVAENLYLGQLPHK-G---GIVNRRLLNYEAREQLEHLGVD--IDPDTPLKYLSIGQRQM  148 (501)
T ss_pred             HHHhCCEEEEEechhccCCCCHHHHHHhcccccc-c---CCCCHHHHHHHHHHHHHHcCCC--CCcCCchhhCCHHHHHH
Confidence            2346789999999999999999776654211110 0   00111 2234443333333221  14588889999999999


Q ss_pred             HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765        183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT  259 (606)
Q Consensus       183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~  259 (606)
                      +.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|+++..++.
T Consensus       149 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~  224 (501)
T PRK11288        149 VEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKDGRYVATFDD  224 (501)
T ss_pred             HHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCc
Confidence            99999999999999999999999999999999999999888999999999987 56789999999999999876653

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.5e-37  Score=346.37  Aligned_cols=218  Identities=19%  Similarity=0.301  Sum_probs=173.7

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC-CCccEEEECCccCCh---h
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN-GVTGQILTNGHSRNI---N  104 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~-~~~G~I~~~G~~~~~---~  104 (606)
                      |+++||+++|        +++++|+|+|+++++||+++|+||||||||||+++|+|+.++ +.+|+|.++|++...   .
T Consensus         2 l~i~~l~~~~--------~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~   73 (500)
T TIGR02633         2 LEMKGIVKTF--------GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIR   73 (500)
T ss_pred             EEEEeEEEEe--------CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHH
Confidence            7899999987        235699999999999999999999999999999999999765 258999999986532   1


Q ss_pred             -hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCccc--ccCCCCCCCCchhh
Q psy13765        105 -AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM--FLDEPTTSNPNDQK  180 (606)
Q Consensus       105 -~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~--~~de~~~~~s~g~~  180 (606)
                       ..++.++||+|++.+++.+|+.+.+.. +.......  +..... .++|+   .+++..-.+-  ..+.+...||||||
T Consensus        74 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~-~~~~~~~~--~~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~~LSgG~~  147 (500)
T TIGR02633        74 DTERAGIVIIHQELTLVPELSVAENIFL-GNEITLPG--GRMAYNAMYLRA---KNLLRELQLDADNVTRPVGDYGGGQQ  147 (500)
T ss_pred             HHHhCCEEEEeeccccCCCCcHHHHHHh-hccccccc--cccCHHHHHHHH---HHHHHHcCCCCCcccCchhhCCHHHH
Confidence             234679999999999999999776643 21100000  001111 12333   3333333332  23577889999999


Q ss_pred             hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765        181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD  260 (606)
Q Consensus       181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~  260 (606)
                      |||.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|+++..|+++
T Consensus       148 qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~~  226 (500)
T TIGR02633       148 QLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRDGQHVATKDMS  226 (500)
T ss_pred             HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeCCeEeeecCcc
Confidence            9999999999999999999999999999999999999999888999999999976 577899999999999999998876


Q ss_pred             H
Q psy13765        261 Q  261 (606)
Q Consensus       261 ~  261 (606)
                      +
T Consensus       227 ~  227 (500)
T TIGR02633       227 T  227 (500)
T ss_pred             c
Confidence            4

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=100.00  E-value=1.8e-37  Score=358.85  Aligned_cols=217  Identities=26%  Similarity=0.403  Sum_probs=166.9

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~  103 (606)
                      -.|+++||+|+|+.+     .++++|+|+|++++|||.+||+||||||||||+|+|+|+++| .+|+|.+||++.   +.
T Consensus       477 ~~I~~~nVsf~Y~~~-----~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p-~~G~I~idg~~i~~~~~  550 (711)
T TIGR00958       477 GLIEFQDVSFSYPNR-----PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP-TGGQVLLDGVPLVQYDH  550 (711)
T ss_pred             CeEEEEEEEEECCCC-----CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC-CCCEEEECCEEHHhcCH
Confidence            369999999998532     236799999999999999999999999999999999999887 599999999864   45


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHH---HHHhc-CCc-c-cccCCCCCCCCc
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIA---LELIN-NPR-V-MFLDEPTTSNPN  177 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia---~~L~~-~~~-~-~~~de~~~~~s~  177 (606)
                      ..+++.++||+|++.+++. |+.|.+.. |..+.        +-.+-+++.-.   .+.+. -|+ + ...+|....+||
T Consensus       551 ~~lr~~i~~v~Q~~~lF~g-TIreNI~~-g~~~~--------~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG  620 (711)
T TIGR00958       551 HYLHRQVALVGQEPVLFSG-SVRENIAY-GLTDT--------PDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSG  620 (711)
T ss_pred             HHHHhhceEEecCcccccc-CHHHHHhc-CCCCC--------CHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCH
Confidence            6788999999999999875 66554432 22211        11111111100   11111 121 1 134555667888


Q ss_pred             hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      |||||++|||||+++|+|++||||||+||+.++..+.+ ..  ..+++|+|+++|+++.  .+.+|+|++|++|++++.|
T Consensus       621 GQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~--i~~aD~IivL~~G~ive~G  695 (711)
T TIGR00958       621 GQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLST--VERADQILVLKKGSVVEMG  695 (711)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHH--HHhCCEEEEEECCEEEEee
Confidence            88888888888899999999999999999999999888 22  2358999999999863  4789999999999999999


Q ss_pred             ChhHHHH
Q psy13765        258 ATDQLVN  264 (606)
Q Consensus       258 ~~~~~~~  264 (606)
                      +++++.+
T Consensus       696 t~~eL~~  702 (711)
T TIGR00958       696 THKQLME  702 (711)
T ss_pred             CHHHHHh
Confidence            9999865

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=1.6e-37  Score=348.20  Aligned_cols=224  Identities=22%  Similarity=0.344  Sum_probs=178.1

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC----CccEEEECCccCCh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG----VTGQILTNGHSRNI  103 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~----~~G~I~~~G~~~~~  103 (606)
                      .|+++|++++|+.+    .+.+.+|+|+|+++++||+++|+||||||||||+|+|+|+.++.    .+|+|.++|++...
T Consensus         5 ~l~~~~l~~~~~~~----~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~   80 (529)
T PRK15134          5 LLAIENLSVAFRQQ----QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLH   80 (529)
T ss_pred             eEEEeceEEEecCC----CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEeccc
Confidence            58999999998421    11357999999999999999999999999999999999998752    58999999986532


Q ss_pred             ---h---hhc-ccEEEEccCCC--CCCCCcHHHHHHHc-CCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCC
Q psy13765        104 ---N---AFR-RVSCYIQQDDR--LQPLLTIENVMSLL-GLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEP  171 (606)
Q Consensus       104 ---~---~~~-~~~~yv~Q~~~--l~~~ltv~~~l~~~-gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~  171 (606)
                         .   ..+ +.+|||+|++.  +.+.+|+++.+... .+.       .+++..+ ++|+.-+.+.+.-++.. .+|.+
T Consensus        81 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~  153 (529)
T PRK15134         81 ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH-------RGMRREAARGEILNCLDRVGIRQAAKRLTDY  153 (529)
T ss_pred             CCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHCCCCChHHHHhhC
Confidence               1   123 57999999975  66777887765421 110       0123332 35554444444332221 45889


Q ss_pred             CCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecC
Q psy13765        172 TTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSG  250 (606)
Q Consensus       172 ~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~  250 (606)
                      ...|||||||||.||+||+.+|++|+|||||+|||+.++..+.++|++++++ |+|||++||++. .+..+|||+++|++
T Consensus       154 ~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~l~~  232 (529)
T PRK15134        154 PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRVAVMQN  232 (529)
T ss_pred             CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEEEEC
Confidence            9999999999999999999999999999999999999999999999999875 899999999987 46789999999999


Q ss_pred             CcEEEEcChhHHH
Q psy13765        251 GQCLYQGATDQLV  263 (606)
Q Consensus       251 G~~~~~G~~~~~~  263 (606)
                      |++++.|+++++.
T Consensus       233 G~i~~~g~~~~~~  245 (529)
T PRK15134        233 GRCVEQNRAATLF  245 (529)
T ss_pred             CEEEEeCCHHHHh
Confidence            9999999988764

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=2.2e-37  Score=306.23  Aligned_cols=198  Identities=20%  Similarity=0.335  Sum_probs=158.3

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhc
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR  107 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~  107 (606)
                      .++++|++++++        ++.+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+......+
T Consensus         2 ~l~~~~l~~~~~--------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~   72 (207)
T PRK13539          2 MLEGEDLACVRG--------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP-AAGTIKLDGGDIDDPDVA   72 (207)
T ss_pred             EEEEEeEEEEEC--------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEeCcchhhH
Confidence            589999999873        35699999999999999999999999999999999999776 599999999764322367


Q ss_pred             ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHHH
Q psy13765        108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSIA  186 (606)
Q Consensus       108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~IA  186 (606)
                      +.++|++|++.+++.+|+.+.+....  ...+     .   +.+++.   +++..-++- ..|.+...+|+|||||+.||
T Consensus        73 ~~~~~~~~~~~~~~~~tv~~~l~~~~--~~~~-----~---~~~~~~---~~l~~~~l~~~~~~~~~~LS~G~~qrl~la  139 (207)
T PRK13539         73 EACHYLGHRNAMKPALTVAENLEFWA--AFLG-----G---EELDIA---AALEAVGLAPLAHLPFGYLSAGQKRRVALA  139 (207)
T ss_pred             hhcEEecCCCcCCCCCcHHHHHHHHH--HhcC-----C---cHHHHH---HHHHHcCCHHHHcCChhhcCHHHHHHHHHH
Confidence            78999999998888899876654321  0000     0   112322   222222221 45788889999999999999


Q ss_pred             HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765        187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG  250 (606)
Q Consensus       187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~  250 (606)
                      +||+.+|++++|||||+|||+.+...+.+.|++++++|+|||+++|++.. +..  |+++.+..
T Consensus       140 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~--~~~~~~~~  200 (207)
T PRK13539        140 RLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLG-LPG--ARELDLGP  200 (207)
T ss_pred             HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchh-hcc--CcEEeecC
Confidence            99999999999999999999999999999999998889999999999764 543  88887743

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-37  Score=354.12  Aligned_cols=224  Identities=21%  Similarity=0.313  Sum_probs=177.0

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC------
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR------  101 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~------  101 (606)
                      .|+++||+++|..+    .+.+++|+||||++++||++||+||||||||||+|+|+|+.++ .+|+|.++|...      
T Consensus        12 ~l~v~~l~~~y~~~----~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p-~~G~i~~~g~~~~~~~~~   86 (623)
T PRK10261         12 VLAVENLNIAFMQE----QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ-AGGLVQCDKMLLRRRSRQ   86 (623)
T ss_pred             eEEEeceEEEecCC----CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC-CCeEEEECCEEecccccc
Confidence            59999999998421    1235799999999999999999999999999999999999876 489999988532      


Q ss_pred             -------Chh---hhc-ccEEEEccCC--CCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc-c
Q psy13765        102 -------NIN---AFR-RVSCYIQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV-M  166 (606)
Q Consensus       102 -------~~~---~~~-~~~~yv~Q~~--~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~-~  166 (606)
                             +..   .++ +.+|||+|++  .+++.+||.+.+.. ++..  +   .+++.-+ ++|+.-+.+.+.-++- -
T Consensus        87 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~-~~~~--~---~~~~~~~~~~~~~~~l~~~gL~~~~~  160 (623)
T PRK10261         87 VIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAE-SIRL--H---QGASREEAMVEAKRMLDQVRIPEAQT  160 (623)
T ss_pred             ccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHH-HHHH--h---cCCCHHHHHHHHHHHHHHCCCCChhh
Confidence                   111   222 4699999998  67888999776543 1110  0   0123222 3444333333322211 2


Q ss_pred             ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhccee
Q psy13765        167 FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQV  245 (606)
Q Consensus       167 ~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v  245 (606)
                      .+|.+...|||||||||.||+||+.+|++|||||||+|||+.++.++.++|++++++ |+|||++|||+. .+.++|||+
T Consensus       161 ~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~~adri  239 (623)
T PRK10261        161 ILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VVAEIADRV  239 (623)
T ss_pred             HHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEE
Confidence            468899999999999999999999999999999999999999999999999999865 999999999976 577899999


Q ss_pred             eeecCCcEEEEcChhHHH
Q psy13765        246 YLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       246 ~~L~~G~~~~~G~~~~~~  263 (606)
                      ++|++|++++.|+++++.
T Consensus       240 ~vl~~G~i~~~g~~~~~~  257 (623)
T PRK10261        240 LVMYQGEAVETGSVEQIF  257 (623)
T ss_pred             EEeeCCeecccCCHHHhh
Confidence            999999999999988764

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=100.00  E-value=2.2e-37  Score=303.97  Aligned_cols=195  Identities=23%  Similarity=0.343  Sum_probs=155.0

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh--hhh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--NAF  106 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--~~~  106 (606)
                      ++++|+++++        +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...  ..+
T Consensus         1 l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~   71 (198)
T TIGR01189         1 LAARNLACSR--------GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP-DSGEVRWNGTALAEQRDEP   71 (198)
T ss_pred             CEEEEEEEEE--------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEEcccchHHh
Confidence            4689999986        345799999999999999999999999999999999999876 59999999976431  335


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHH
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIA  186 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA  186 (606)
                      ++.++|++|++.+++.+|+.+.+....  ..        .+.+++++.-+.+.+.-.  -.+|.+...+|+|||||+.||
T Consensus        72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~--~~--------~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la  139 (198)
T TIGR01189        72 HRNILYLGHLPGLKPELSALENLHFWA--AI--------HGGAQRTIEDALAAVGLT--GFEDLPAAQLSAGQQRRLALA  139 (198)
T ss_pred             hhheEEeccCcccccCCcHHHHHHHHH--HH--------cCCcHHHHHHHHHHcCCH--HHhcCChhhcCHHHHHHHHHH
Confidence            678999999999988889877665321  00        011223333222222211  135778889999999999999


Q ss_pred             HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeee
Q psy13765        187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYL  247 (606)
Q Consensus       187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~  247 (606)
                      +|++.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++..   -.+|+++.
T Consensus       140 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~  197 (198)
T TIGR01189       140 RLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR  197 (198)
T ss_pred             HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence            99999999999999999999999999999999998889999999999864   35677764

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=1.9e-37  Score=346.95  Aligned_cols=218  Identities=26%  Similarity=0.357  Sum_probs=171.6

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC--CCCCccEEEECC--------
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR--SNGVTGQILTNG--------   98 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~--~~~~~G~I~~~G--------   98 (606)
                      |+++|++++|        +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.  ++ .+|+|.++|        
T Consensus         1 l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p-~~G~i~~~~~~~~~~~~   71 (520)
T TIGR03269         1 IEVKNLTKKF--------DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP-TSGRIIYHVALCEKCGY   71 (520)
T ss_pred             CEEEEEEEEE--------CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCC-CceEEEEeccccccccc
Confidence            4789999987        2357999999999999999999999999999999999986  34 589999972        


Q ss_pred             ---------------ccC----------Ch---hhhcccEEEEccC-CCCCCCCcHHHHHHHcCCccccCCccccCChHH
Q psy13765         99 ---------------HSR----------NI---NAFRRVSCYIQQD-DRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ  149 (606)
Q Consensus        99 ---------------~~~----------~~---~~~~~~~~yv~Q~-~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq  149 (606)
                                     .+.          ..   ...++.++||+|+ +.+++.+|+.+.+.. ++..      .+.+..+
T Consensus        72 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~-~~~~------~~~~~~~  144 (520)
T TIGR03269        72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLE-ALEE------IGYEGKE  144 (520)
T ss_pred             cccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHH-HHHH------cCCCHHH
Confidence                           111          00   1245679999997 678888898665543 1111      0122222


Q ss_pred             -HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCE
Q psy13765        150 -KKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRT  226 (606)
Q Consensus       150 -rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~t  226 (606)
                       ++|+.   +++..-.+- .+|.+...|||||||||.||+||+.+|++|+|||||+|||+.++..+.++|+++++ .|+|
T Consensus       145 ~~~~~~---~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~t  221 (520)
T TIGR03269       145 AVGRAV---DLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGIS  221 (520)
T ss_pred             HHHHHH---HHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcE
Confidence             33443   233322331 45788899999999999999999999999999999999999999999999999976 4999


Q ss_pred             EEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHHHH
Q psy13765        227 IICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYL  266 (606)
Q Consensus       227 ii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~~f  266 (606)
                      ||++|||+. .+.++||++++|++|++++.|+++++.+.+
T Consensus       222 viivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~  260 (520)
T TIGR03269       222 MVLTSHWPE-VIEDLSDKAIWLENGEIKEEGTPDEVVAVF  260 (520)
T ss_pred             EEEEeCCHH-HHHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence            999999987 467899999999999999999988876543

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=2.6e-37  Score=345.88  Aligned_cols=221  Identities=20%  Similarity=0.334  Sum_probs=176.7

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEEC-Ccc---CC
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTN-GHS---RN  102 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~-G~~---~~  102 (606)
                      ..|+++||++.|+..   +.+.+.+|+|+||+|++||+++|+||||||||||+|+|+|+.++ .+|+|.++ |.+   ..
T Consensus       278 ~~l~~~~l~~~~~~~---~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p-~~G~i~~~~g~~~~~~~  353 (520)
T TIGR03269       278 PIIKVRNVSKRYISV---DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP-TSGEVNVRVGDEWVDMT  353 (520)
T ss_pred             ceEEEeccEEEeccC---CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEEecCCcccccc
Confidence            369999999997421   01235699999999999999999999999999999999999876 59999996 532   11


Q ss_pred             ------hhhhcccEEEEccCCCCCCCCcHHHHHHH-cCCccccCCccccCChH-HHHHHHHHHHHhcCCccc------cc
Q psy13765        103 ------INAFRRVSCYIQQDDRLQPLLTIENVMSL-LGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM------FL  168 (606)
Q Consensus       103 ------~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~-~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~------~~  168 (606)
                            ....++.++|++|++.+++.+|+.+.+.. +++    +     .+.. .++++.   +++..-.+-      .+
T Consensus       354 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~----~-----~~~~~~~~~~~---~~l~~~~l~~~~~~~~~  421 (520)
T TIGR03269       354 KPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL----E-----LPDELARMKAV---ITLKMVGFDEEKAEEIL  421 (520)
T ss_pred             ccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc----C-----CCHHHHHHHHH---HHHHhCCCCCccchhhh
Confidence                  11345679999999999999999776653 221    0     1111 123332   333332331      46


Q ss_pred             CCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeee
Q psy13765        169 DEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYL  247 (606)
Q Consensus       169 de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~  247 (606)
                      |.+...|||||||||.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++|||+. .+.++||++++
T Consensus       422 ~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~  500 (520)
T TIGR03269       422 DKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAAL  500 (520)
T ss_pred             hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEE
Confidence            8899999999999999999999999999999999999999999999999999865 899999999987 57789999999


Q ss_pred             ecCCcEEEEcChhHHHH
Q psy13765        248 LSGGQCLYQGATDQLVN  264 (606)
Q Consensus       248 L~~G~~~~~G~~~~~~~  264 (606)
                      |++|+++..|+++++.+
T Consensus       501 l~~G~i~~~g~~~~~~~  517 (520)
T TIGR03269       501 MRDGKIVKIGDPEEIVE  517 (520)
T ss_pred             EECCEEEEECCHHHHHh
Confidence            99999999999887654

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=100.00  E-value=3.9e-37  Score=304.20  Aligned_cols=199  Identities=24%  Similarity=0.350  Sum_probs=163.2

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~  104 (606)
                      .++++|++++++.      ..+.+++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..   ..
T Consensus         6 ~l~~~~l~~~~~~------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~   78 (207)
T cd03369           6 EIEVENLSVRYAP------DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA-EEGKIEIDGIDISTIPLE   78 (207)
T ss_pred             eEEEEEEEEEeCC------CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCC-CCCeEEECCEEhHHCCHH
Confidence            5889999998742      124699999999999999999999999999999999999876 5999999998642   23


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS  184 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~  184 (606)
                      ..++.++|++|++.+++. |+.+.+....      .    ..  +++ +.   +.+.      ++++...+|+||+||+.
T Consensus        79 ~~~~~i~~v~q~~~~~~~-tv~~~l~~~~------~----~~--~~~-~~---~~l~------~~~~~~~LS~G~~qrv~  135 (207)
T cd03369          79 DLRSSLTIIPQDPTLFSG-TIRSNLDPFD------E----YS--DEE-IY---GALR------VSEGGLNLSQGQRQLLC  135 (207)
T ss_pred             HHHhhEEEEecCCcccCc-cHHHHhcccC------C----CC--HHH-HH---HHhh------ccCCCCcCCHHHHHHHH
Confidence            456789999999988874 8876654211      0    11  111 11   1111      46788899999999999


Q ss_pred             HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765        185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT  259 (606)
Q Consensus       185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~  259 (606)
                      |||||+.+|++++|||||+|||+.++..+.+.|++++ +|+|+|++||++.. +. .+|++++|++|+++..|++
T Consensus       136 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~-~~-~~d~v~~l~~g~i~~~g~~  207 (207)
T cd03369         136 LARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRT-II-DYDKILVMDAGEVKEYDHP  207 (207)
T ss_pred             HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hh-hCCEEEEEECCEEEecCCC
Confidence            9999999999999999999999999999999999985 48999999999874 54 4999999999999988763

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=100.00  E-value=2.5e-37  Score=358.11  Aligned_cols=216  Identities=27%  Similarity=0.403  Sum_probs=171.6

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Chh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NIN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~  104 (606)
                      .|+++||+|+|+       .++++|+|+|++|++||.+||+||||||||||+|+|+|+++| .+|+|.+||.+.   +..
T Consensus       473 ~I~~~~vsf~y~-------~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p-~~G~I~idg~~i~~~~~~  544 (708)
T TIGR01193       473 DIVINDVSYSYG-------YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA-RSGEILLNGFSLKDIDRH  544 (708)
T ss_pred             cEEEEEEEEEcC-------CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CCcEEEECCEEHHHcCHH
Confidence            699999999984       235799999999999999999999999999999999999887 599999999764   557


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHH----HHHHHhcCCcc--cccCCCCCCCCch
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLS----IALELINNPRV--MFLDEPTTSNPND  178 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~----ia~~L~~~~~~--~~~de~~~~~s~g  178 (606)
                      .+|+.+|||+|++.+++. |+.|.+..-.-.        +.+-.+-.++.    +...+...|+=  ....|...+||||
T Consensus       545 ~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~~--------~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgG  615 (708)
T TIGR01193       545 TLRQFINYLPQEPYIFSG-SILENLLLGAKE--------NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGG  615 (708)
T ss_pred             HHHHheEEEecCceehhH-HHHHHHhccCCC--------CCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHH
Confidence            789999999999999876 665544331000        12222222221    11111122221  1345566778999


Q ss_pred             hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      ||||++|||||+++|++|+||||||+||+.++..+.+.|+++  +|+|+|+++|+++.  .+.+|++++|++|++++.|+
T Consensus       616 QrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~--~~~~D~i~~l~~G~i~~~G~  691 (708)
T TIGR01193       616 QKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSV--AKQSDKIIVLDHGKIIEQGS  691 (708)
T ss_pred             HHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHH--HHcCCEEEEEECCEEEEECC
Confidence            999999999999999999999999999999999999999875  47999999999863  47899999999999999999


Q ss_pred             hhHHHH
Q psy13765        259 TDQLVN  264 (606)
Q Consensus       259 ~~~~~~  264 (606)
                      ++++.+
T Consensus       692 ~~~L~~  697 (708)
T TIGR01193       692 HDELLD  697 (708)
T ss_pred             HHHHHh
Confidence            998865

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=9e-39  Score=302.21  Aligned_cols=220  Identities=23%  Similarity=0.417  Sum_probs=177.4

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Chhh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NINA  105 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~~  105 (606)
                      ++++||+++|        +.+.+|+|+|.+|++|.+++++|||||||||||.+++++.+. .+|+|.++|.+.   +.++
T Consensus         2 I~i~nv~K~y--------~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~-d~G~i~i~g~~~~~~~s~~   72 (252)
T COG4604           2 ITIENVSKSY--------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKK-DSGEITIDGLELTSTPSKE   72 (252)
T ss_pred             eeehhhhHhh--------CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccc-cCceEEEeeeecccCChHH
Confidence            6789999886        668899999999999999999999999999999999999876 599999999864   3467


Q ss_pred             hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI  185 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I  185 (606)
                      +.+.++.+-|+.+....+||+++... |.-+.-   -+.|....++.+.-|.+.+.-.++  -|+-...||||||||.-|
T Consensus        73 LAk~lSILkQ~N~i~~rlTV~dLv~F-GRfPYS---qGRlt~eD~~~I~~aieyl~L~~l--~dryLd~LSGGQrQRAfI  146 (252)
T COG4604          73 LAKKLSILKQENHINSRLTVRDLVGF-GRFPYS---QGRLTKEDRRIINEAIEYLHLEDL--SDRYLDELSGGQRQRAFI  146 (252)
T ss_pred             HHHHHHHHHhhchhhheeEHHHHhhc-CCCccc---CCCCchHHHHHHHHHHHHhcccch--HHHhHHhcccchhhhhhh
Confidence            88889999999999889998765432 222111   122344445555555555443322  233334466666666668


Q ss_pred             HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      |+.++++.+.++||||.++||...+.++|+.|++++++ |+||+++.||... ...++|+|+-|++|+++..|+++++.+
T Consensus       147 AMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~G~vv~~G~~~eii~  225 (252)
T COG4604         147 AMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKNGKVVKQGSPDEIIQ  225 (252)
T ss_pred             heeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecCCEEEecCCHHHhcC
Confidence            88888889999999999999999999999999999987 9999999999885 568999999999999999999999864

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=100.00  E-value=3.2e-37  Score=308.72  Aligned_cols=212  Identities=25%  Similarity=0.403  Sum_probs=161.6

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---  102 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---  102 (606)
                      ...++++|++++|+.+     +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++..   
T Consensus         9 ~~~l~~~~l~~~~~~~-----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~   82 (226)
T cd03248           9 KGIVKFQNVTFAYPTR-----PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP-QGGQVLLDGKPISQYE   82 (226)
T ss_pred             CceEEEEEEEEEeCCC-----CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCcEEEECCCchHHcC
Confidence            3468999999998421     124699999999999999999999999999999999999876 5999999997643   


Q ss_pred             hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCC--cc-cccCCCCCCCCchh
Q psy13765        103 INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNP--RV-MFLDEPTTSNPNDQ  179 (606)
Q Consensus       103 ~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~--~~-~~~de~~~~~s~g~  179 (606)
                      ....++.++|++|++.+++ .|+.+.+.. +...   .....+..- ..+.. +.+++..-  .+ -.++++...+|+||
T Consensus        83 ~~~~~~~i~~~~q~~~l~~-~tv~~nl~~-~~~~---~~~~~~~~~-~~~~~-~~~~l~~l~~gl~~~~~~~~~~LSgG~  155 (226)
T cd03248          83 HKYLHSKVSLVGQEPVLFA-RSLQDNIAY-GLQS---CSFECVKEA-AQKAH-AHSFISELASGYDTEVGEKGSQLSGGQ  155 (226)
T ss_pred             HHHHHhhEEEEecccHHHh-hhHHHHhcc-ccCC---CCHHHHHHH-HHHcC-cHHHHHhccccccchhhcCCCcCCHHH
Confidence            2345678999999998876 477665532 2111   000001000 01111 11222221  12 14688889999999


Q ss_pred             hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765        180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC  253 (606)
Q Consensus       180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~  253 (606)
                      |||+.||+||+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||+++. + ..||++++|++|++
T Consensus       156 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~i~~l~~g~i  226 (226)
T cd03248         156 KQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLST-V-ERADQILVLDGGRI  226 (226)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHH-H-HhCCEEEEecCCcC
Confidence            9999999999999999999999999999999999999999875 6899999999874 5 45999999999874

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.6e-37  Score=346.44  Aligned_cols=224  Identities=21%  Similarity=0.344  Sum_probs=176.0

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----  103 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----  103 (606)
                      .|+++||++.|+.     .+++.+|+|+|++|++||+++|+||||||||||+|+|+|+.+++.+|+|.++|++...    
T Consensus       259 ~l~~~~l~~~~~~-----~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~  333 (506)
T PRK13549        259 ILEVRNLTAWDPV-----NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQ  333 (506)
T ss_pred             eEEEecCcccccc-----ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHH
Confidence            5899999987631     1235699999999999999999999999999999999999863358999999976531    


Q ss_pred             hhhcccEEEEccCC---CCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCccc--ccCCCCCCCCc
Q psy13765        104 NAFRRVSCYIQQDD---RLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM--FLDEPTTSNPN  177 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~---~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~--~~de~~~~~s~  177 (606)
                      ...++.++|++|++   .+++.+|+.+.+..--......  .+..+.. .++++   .+++..-.+-  ..|.+...|||
T Consensus       334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~~LSg  408 (506)
T PRK13549        334 QAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTG--GSRIDDAAELKTI---LESIQRLKVKTASPELAIARLSG  408 (506)
T ss_pred             HHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhcc--CcccChHHHHHHH---HHHHHhcCccCCCcccccccCCH
Confidence            23356799999995   4778889877654311100000  0001211 23333   3333333342  46889999999


Q ss_pred             hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      ||||||.||+||+.+|++|+|||||+|||+.++..+.++|++++++|+|||++|||++ .+.++||++++|++|+++..|
T Consensus       409 G~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~G~i~~~~  487 (506)
T PRK13549        409 GNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHEGKLKGDL  487 (506)
T ss_pred             HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEe
Confidence            9999999999999999999999999999999999999999999888999999999986 577899999999999999999


Q ss_pred             ChhHH
Q psy13765        258 ATDQL  262 (606)
Q Consensus       258 ~~~~~  262 (606)
                      +++++
T Consensus       488 ~~~~~  492 (506)
T PRK13549        488 INHNL  492 (506)
T ss_pred             ccccC
Confidence            87654

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=2.6e-37  Score=378.76  Aligned_cols=222  Identities=23%  Similarity=0.336  Sum_probs=185.9

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--hhh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--INA  105 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--~~~  105 (606)
                      .|+++||+++|..      +++.+|+|||++|++||+++|+||||||||||+|+|+|..++ .+|+|.++|++..  ..+
T Consensus      1937 ~L~v~nLsK~Y~~------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p-tsG~I~i~G~~i~~~~~~ 2009 (2272)
T TIGR01257      1937 ILRLNELTKVYSG------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV-TSGDATVAGKSILTNISD 2009 (2272)
T ss_pred             eEEEEEEEEEECC------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCC-CccEEEECCEECcchHHH
Confidence            5899999999731      236799999999999999999999999999999999999877 5999999998763  234


Q ss_pred             hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHH
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRL  183 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl  183 (606)
                      .++.+||++|++.+++.+|+.|.+...+.       ..+++..+ ++++   .+++..-++- ..|.+...+||||||||
T Consensus      2010 ~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~-------l~g~~~~~~~~~v---~~lLe~lgL~~~~dk~~~~LSGGqKqRL 2079 (2272)
T TIGR01257      2010 VHQNMGYCPQFDAIDDLLTGREHLYLYAR-------LRGVPAEEIEKVA---NWSIQSLGLSLYADRLAGTYSGGNKRKL 2079 (2272)
T ss_pred             HhhhEEEEeccccCCCCCCHHHHHHHHHH-------hcCCCHHHHHHHH---HHHHHHcCCHHHhcCChhhCCHHHHHHH
Confidence            56789999999999999999888765321       11122222 2333   2333333332 56888999999999999


Q ss_pred             HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765        184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                      +||+||+.+|+|++|||||+|||+.+++.+.+.|++++++|+|||+|||+++ ++.++|||+++|++|+++..|+++++.
T Consensus      2080 slA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~G~i~~~Gs~q~Lk 2158 (2272)
T TIGR01257      2080 STAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVKGAFQCLGTIQHLK 2158 (2272)
T ss_pred             HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            9999999999999999999999999999999999999888999999999987 578999999999999999999999998


Q ss_pred             HHHH
Q psy13765        264 NYLS  267 (606)
Q Consensus       264 ~~f~  267 (606)
                      ..|.
T Consensus      2159 ~~~g 2162 (2272)
T TIGR01257      2159 SKFG 2162 (2272)
T ss_pred             HHhC
Confidence            8764

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=100.00  E-value=3e-37  Score=308.98  Aligned_cols=201  Identities=24%  Similarity=0.390  Sum_probs=153.8

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcc
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR  108 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~  108 (606)
                      +.++|+++.|        +++++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...     
T Consensus        23 l~~~~~~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~-----   88 (224)
T cd03220          23 LGILGRKGEV--------GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP-DSGTVTVRGRVSSL-----   88 (224)
T ss_pred             hhhhhhhhhc--------CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEchh-----
Confidence            4455555543        557899999999999999999999999999999999999876 59999999975421     


Q ss_pred             cEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHH
Q psy13765        109 VSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL  187 (606)
Q Consensus       109 ~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~  187 (606)
                          ..+...+.+.+|+.+.+..... .      .+.+..+ ++++.-+.+++.-++  .+|.+...+|+|||||++||+
T Consensus        89 ----~~~~~~~~~~~tv~enl~~~~~-~------~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~LSgG~~qrv~lar  155 (224)
T cd03220          89 ----LGLGGGFNPELTGRENIYLNGR-L------LGLSRKEIDEKIDEIIEFSELGD--FIDLPVKTYSSGMKARLAFAI  155 (224)
T ss_pred             ----hcccccCCCCCcHHHHHHHHHH-H------cCCCHHHHHHHHHHHHHHcCChh--hhhCChhhCCHHHHHHHHHHH
Confidence                1112334567888766543210 0      0112222 223332223322111  357788899999999999999


Q ss_pred             hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        188 ELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       188 aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      ||+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++|++++.|
T Consensus       156 al~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g  224 (224)
T cd03220         156 ATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG  224 (224)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence            999999999999999999999999999999999877899999999976 567889999999999998765

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=5.8e-37  Score=301.50  Aligned_cols=194  Identities=21%  Similarity=0.374  Sum_probs=156.4

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--hhhh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--INAF  106 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--~~~~  106 (606)
                      |+++|++++++        ++++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++..  ...+
T Consensus         2 l~~~~l~~~~~--------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~   72 (200)
T PRK13540          2 LDVIELDFDYH--------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP-EKGEILFERQSIKKDLCTY   72 (200)
T ss_pred             EEEEEEEEEeC--------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCeeEEECCCccccCHHHH
Confidence            78999999873        35699999999999999999999999999999999999876 5999999998653  2456


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHH
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIA  186 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA  186 (606)
                      ++.++|++|+..+++..|+.+.+.. +...         +..+ +++.-+.+.+.-++  ..|.+...+|+|||||+.||
T Consensus        73 ~~~i~~~~q~~~~~~~~tv~~~~~~-~~~~---------~~~~-~~~~~~l~~~~l~~--~~~~~~~~LS~G~~~rv~la  139 (200)
T PRK13540         73 QKQLCFVGHRSGINPYLTLRENCLY-DIHF---------SPGA-VGITELCRLFSLEH--LIDYPCGLLSSGQKRQVALL  139 (200)
T ss_pred             HhheEEeccccccCcCCCHHHHHHH-HHhc---------Ccch-HHHHHHHHHcCCch--hhhCChhhcCHHHHHHHHHH
Confidence            7789999999998888999776653 2110         0111 22222222222222  45788899999999999999


Q ss_pred             HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceee
Q psy13765        187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVY  246 (606)
Q Consensus       187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~  246 (606)
                      +|++.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++..  ...+|...
T Consensus       140 ral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--~~~~d~~~  197 (200)
T PRK13540        140 RLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP--LNKADYEE  197 (200)
T ss_pred             HHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh--ccccchhh
Confidence            99999999999999999999999999999999998789999999999763  36677644

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=100.00  E-value=4.7e-37  Score=294.86  Aligned_cols=168  Identities=33%  Similarity=0.607  Sum_probs=142.9

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INA  105 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~  105 (606)
                      ++++|++++++.      .++.+++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++..   ...
T Consensus         1 l~~~~l~~~~~~------~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~   73 (171)
T cd03228           1 IEFKNVSFSYPG------RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILIDGVDLRDLDLES   73 (171)
T ss_pred             CEEEEEEEEcCC------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCEEhhhcCHHH
Confidence            468999998732      113699999999999999999999999999999999999876 5999999997643   234


Q ss_pred             hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI  185 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I  185 (606)
                      +++.++|++|++.+++ .|+.+.+               ||||||||+++|++|+.+                       
T Consensus        74 ~~~~i~~~~~~~~~~~-~t~~e~l---------------LS~G~~~rl~la~al~~~-----------------------  114 (171)
T cd03228          74 LRKNIAYVPQDPFLFS-GTIRENI---------------LSGGQRQRIAIARALLRD-----------------------  114 (171)
T ss_pred             HHhhEEEEcCCchhcc-chHHHHh---------------hCHHHHHHHHHHHHHhcC-----------------------
Confidence            5678999999998776 4776543               888888888876666666                       


Q ss_pred             HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765        186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ  252 (606)
Q Consensus       186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~  252 (606)
                             |++++|||||+|||+.++..+.+.|+++++ ++|||+++|++.. +.. ||++++|++|+
T Consensus       115 -------p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~~-~d~~~~l~~g~  171 (171)
T cd03228         115 -------PPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLST-IRD-ADRIIVLDDGR  171 (171)
T ss_pred             -------CCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-HHh-CCEEEEEcCCC
Confidence                   999999999999999999999999999964 7999999999874 555 99999999885

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-36  Score=311.10  Aligned_cols=217  Identities=19%  Similarity=0.298  Sum_probs=169.4

Q ss_pred             eEEEEEeeEEEEecCCc-----------c-cccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEE
Q psy13765         27 IEIKFKDLTYTVSTGLG-----------F-KQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQI   94 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~-----------~-~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I   94 (606)
                      +.|+++||+++|.....           + ....+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p-~~G~I   81 (264)
T PRK13546          3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSP-TVGKV   81 (264)
T ss_pred             ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-CceEE
Confidence            57899999999865211           1 12446799999999999999999999999999999999999876 58999


Q ss_pred             EECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc-cccCCCCC
Q psy13765         95 LTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-MFLDEPTT  173 (606)
Q Consensus        95 ~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~-~~~de~~~  173 (606)
                      .++|+          +++++|+..+.+.+|+.+.+......       .+....+.+  ..+..++....+ -..+.+..
T Consensus        82 ~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~-------~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~~  142 (264)
T PRK13546         82 DRNGE----------VSVIAISAGLSGQLTGIENIEFKMLC-------MGFKRKEIK--AMTPKIIEFSELGEFIYQPVK  142 (264)
T ss_pred             EECCE----------EeEEecccCCCCCCcHHHHHHHHHHH-------cCCCHHHHH--HHHHHHHHHcCCchhhcCCcc
Confidence            99984          35667777777778886665421100       011111111  111112211111 14577888


Q ss_pred             CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765        174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC  253 (606)
Q Consensus       174 ~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~  253 (606)
                      .+|+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||++++|++|++
T Consensus       143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~G~i  221 (264)
T PRK13546        143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEGGKL  221 (264)
T ss_pred             cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEECCEE
Confidence            99999999999999999999999999999999999999999999999878999999999976 57789999999999999


Q ss_pred             EEEcChhHHHH
Q psy13765        254 LYQGATDQLVN  264 (606)
Q Consensus       254 ~~~G~~~~~~~  264 (606)
                      +..|+++++.+
T Consensus       222 ~~~g~~~~~~~  232 (264)
T PRK13546        222 KDYGELDDVLP  232 (264)
T ss_pred             EEeCCHHHHHH
Confidence            99999988754

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-36  Score=316.63  Aligned_cols=226  Identities=23%  Similarity=0.333  Sum_probs=173.3

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccCC
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSRN  102 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~~  102 (606)
                      ..|+++||++.+.        .+.+|+|+|++|++||+++|+||||||||||+++|+|+.++    +.+|+|.++|.+..
T Consensus        44 ~~l~i~nl~~~~~--------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~  115 (305)
T PRK14264         44 AKLSVEDLDVYYG--------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY  115 (305)
T ss_pred             ceEEEEEEEEEeC--------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence            4689999999873        35699999999999999999999999999999999999752    35899999997643


Q ss_pred             -----hhhhcccEEEEccCCCCCCCCcHHHHHHH-cCCccccCCc----cccCChHH--HHHHHHHHHHhcCC-cc-ccc
Q psy13765        103 -----INAFRRVSCYIQQDDRLQPLLTIENVMSL-LGLDESQNTR----SSQLSGGQ--KKRLSIALELINNP-RV-MFL  168 (606)
Q Consensus       103 -----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~-~gl~~~~~~~----~~~lSgGq--rqRv~ia~~L~~~~-~~-~~~  168 (606)
                           ....++.++|++|++.+++. |+.+.+.. .......++.    ....+..+  ++++.-+...+.-+ .+ -.+
T Consensus       116 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~  194 (305)
T PRK14264        116 QDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL  194 (305)
T ss_pred             cccccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh
Confidence                 23456789999999988874 88665543 1111100100    00122222  23332222222111 01 145


Q ss_pred             CCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhccee-ee
Q psy13765        169 DEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQV-YL  247 (606)
Q Consensus       169 de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v-~~  247 (606)
                      |++...+|+|||||+.||+||+++|+||||||||+|||+.++..+.++|+++++ ++|||+++|+++ .+.++||++ ++
T Consensus       195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d~i~~~  272 (305)
T PRK14264        195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISDQTAVF  272 (305)
T ss_pred             cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcCEEEEE
Confidence            888999999999999999999999999999999999999999999999999977 489999999986 467899997 57


Q ss_pred             ecCCcEEEEcChhHHH
Q psy13765        248 LSGGQCLYQGATDQLV  263 (606)
Q Consensus       248 L~~G~~~~~G~~~~~~  263 (606)
                      |++|++++.|+++++.
T Consensus       273 l~~G~i~~~g~~~~~~  288 (305)
T PRK14264        273 LTGGELVEYDDTDKIF  288 (305)
T ss_pred             ecCCEEEEeCCHHHHH
Confidence            7999999999988764

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=3.8e-37  Score=345.26  Aligned_cols=225  Identities=23%  Similarity=0.318  Sum_probs=176.6

Q ss_pred             EEEEEeeEEEEecCCc---ccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-
Q psy13765         28 EIKFKDLTYTVSTGLG---FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-  103 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~---~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-  103 (606)
                      .|+++||++.|+.+..   .+.+.+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+  .+|+|.++|++... 
T Consensus       275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--~~G~i~~~g~~i~~~  352 (529)
T PRK15134        275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN--SQGEIWFDGQPLHNL  352 (529)
T ss_pred             cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCcEEEECCEEcccc
Confidence            5999999999842100   00013579999999999999999999999999999999999974  48999999976431 


Q ss_pred             --h---hhcccEEEEccCC--CCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc--ccCCCCC
Q psy13765        104 --N---AFRRVSCYIQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM--FLDEPTT  173 (606)
Q Consensus       104 --~---~~~~~~~yv~Q~~--~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~--~~de~~~  173 (606)
                        .   .+++.++||+|++  .+++.+|+.+.+..- +.  ...  ..++..+ ++++.   +++..-.+-  ..|.+..
T Consensus       353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~-~~--~~~--~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~  424 (529)
T PRK15134        353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEG-LR--VHQ--PTLSAAQREQQVI---AVMEEVGLDPETRHRYPA  424 (529)
T ss_pred             chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHH-HH--hcc--ccCChHHHHHHHH---HHHHHcCCCHHHHhcCCc
Confidence              1   2356799999997  478888997766431 10  000  0122222 33433   333332331  4688999


Q ss_pred             CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765        174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQ  252 (606)
Q Consensus       174 ~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~  252 (606)
                      .|||||||||.||+||+.+|++|+|||||+|||+.++..+.++|++++++ |+|||++|||+. .+.++||++++|++|+
T Consensus       425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~G~  503 (529)
T PRK15134        425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQGE  503 (529)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEECCE
Confidence            99999999999999999999999999999999999999999999999875 899999999986 4778999999999999


Q ss_pred             EEEEcChhHHH
Q psy13765        253 CLYQGATDQLV  263 (606)
Q Consensus       253 ~~~~G~~~~~~  263 (606)
                      ++..|+++++.
T Consensus       504 i~~~~~~~~~~  514 (529)
T PRK15134        504 VVEQGDCERVF  514 (529)
T ss_pred             EEEEcCHHHHh
Confidence            99999988874

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=8.9e-37  Score=374.14  Aligned_cols=222  Identities=23%  Similarity=0.345  Sum_probs=183.9

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--h
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--I  103 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--~  103 (606)
                      ...|+++||++.++.      +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|++..  .
T Consensus       926 ~~~L~I~nLsK~y~~------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P-tsG~I~i~G~dI~~~~  998 (2272)
T TIGR01257       926 VPGVCVKNLVKIFEP------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP-TSGTVLVGGKDIETNL  998 (2272)
T ss_pred             CceEEEEeEEEEecC------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCC-CceEEEECCEECcchH
Confidence            357999999999732      246799999999999999999999999999999999999877 5999999998753  2


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhh
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKK  181 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~k  181 (606)
                      .+.|+.+||++|++.+++.+||.+.+.....       .++.+..+ ++++.   +++..-++- ..|.+...|||||||
T Consensus       999 ~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~-------lkg~~~~~~~~~v~---~lL~~vgL~~~~~~~~~~LSGGqKQ 1068 (2272)
T TIGR01257       999 DAVRQSLGMCPQHNILFHHLTVAEHILFYAQ-------LKGRSWEEAQLEME---AMLEDTGLHHKRNEEAQDLSGGMQR 1068 (2272)
T ss_pred             HHHhhcEEEEecCCcCCCCCCHHHHHHHHHH-------hcCCCHHHHHHHHH---HHHHHcCCchhhcCChhhCCHHHHH
Confidence            4567789999999999999999887764211       01122222 23333   233332332 568889999999999


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ  261 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~  261 (606)
                      ||+||+||+.+|++++|||||+|||+.+++.+.++|++++ +|+|||++||+++ ++..++||+++|++|+++..|++++
T Consensus      1069 RLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~GkL~~~Gs~~~ 1146 (2272)
T TIGR01257      1069 KLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQGRLYCSGTPLF 1146 (2272)
T ss_pred             HHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHH
Confidence            9999999999999999999999999999999999999995 5999999999987 5778999999999999999999999


Q ss_pred             HHHHH
Q psy13765        262 LVNYL  266 (606)
Q Consensus       262 ~~~~f  266 (606)
                      +.+.|
T Consensus      1147 Lk~~~ 1151 (2272)
T TIGR01257      1147 LKNCF 1151 (2272)
T ss_pred             HHHhc
Confidence            98765

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=2.8e-37  Score=283.34  Aligned_cols=215  Identities=27%  Similarity=0.407  Sum_probs=183.7

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC----
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN----  102 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~----  102 (606)
                      +.|+++|+++.|        +..++|.||+++.++||.+.++||||||||||++.|.=+..| .+|+..+.|...+    
T Consensus         1 msirv~~in~~y--------g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p-~sg~l~ia~~~fd~s~~   71 (242)
T COG4161           1 MSIQLNGINCFY--------GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMP-RSGTLNIAGNHFDFSKT   71 (242)
T ss_pred             CceEEccccccc--------ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCC-CCCeEEecccccccccC
Confidence            358899999986        567899999999999999999999999999999999877665 5999999886432    


Q ss_pred             -----hhhhcccEEEEccCCCCCCCCcHH-HHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCC
Q psy13765        103 -----INAFRRVSCYIQQDDRLQPLLTIE-NVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSN  175 (606)
Q Consensus       103 -----~~~~~~~~~yv~Q~~~l~~~ltv~-~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~  175 (606)
                           ..++|+.+|.|+|+-+++|.+||- ++++.       -.++.++|..|.+  +-|.+|+.+-.+- ..|.-+.+|
T Consensus        72 ~~~k~i~~lr~~vgmvfqqy~lwphltv~enliea-------p~kv~gl~~~qa~--~~a~ellkrlrl~~~adr~plhl  142 (242)
T COG4161          72 PSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEA-------PCRVLGLSKDQAL--ARAEKLLKRLRLKPYADRYPLHL  142 (242)
T ss_pred             ccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhh-------hHHHhCCCHHHHH--HHHHHHHHHhccccccccCceec
Confidence                 145788999999999999999984 44432       2345567766643  4566777776664 778888899


Q ss_pred             CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765        176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY  255 (606)
Q Consensus       176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~  255 (606)
                      ||||+|||+|||||+.+|.+|++||||+.|||+-..++++++++|+..|.|-+++||... ...+.+.+|+.|++|++++
T Consensus       143 sggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~-va~k~as~vvyme~g~ive  221 (242)
T COG4161         143 SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVE  221 (242)
T ss_pred             ccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh-HHHhhhhheEeeecCeeEe
Confidence            999999999999999999999999999999999999999999999999999999999977 4678999999999999999


Q ss_pred             EcChh
Q psy13765        256 QGATD  260 (606)
Q Consensus       256 ~G~~~  260 (606)
                      .|+.+
T Consensus       222 ~g~a~  226 (242)
T COG4161         222 QGDAS  226 (242)
T ss_pred             ecchh
Confidence            99864

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=100.00  E-value=1.1e-36  Score=344.43  Aligned_cols=218  Identities=24%  Similarity=0.390  Sum_probs=165.4

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Chh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NIN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~  104 (606)
                      .++++||+++|+.      .++++|+|+|+++++||.++|+||||||||||+|+|+|+.++ .+|+|.+||.+.   +..
T Consensus       330 ~i~~~~v~f~y~~------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~-~~G~I~i~g~~i~~~~~~  402 (571)
T TIGR02203       330 DVEFRNVTFRYPG------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEP-DSGQILLDGHDLADYTLA  402 (571)
T ss_pred             eEEEEEEEEEcCC------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC-CCCeEEECCEeHHhcCHH
Confidence            6999999999842      235799999999999999999999999999999999999887 589999999764   456


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHH----HHHHHHhcCCc-c-cccCCCCCCCCch
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL----SIALELINNPR-V-MFLDEPTTSNPND  178 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv----~ia~~L~~~~~-~-~~~de~~~~~s~g  178 (606)
                      .+++.++||+|++.+++. |+.+.+....-+        +.+--+-..+    .+-.-+-.-|+ + ...+|-...+|||
T Consensus       403 ~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~--------~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG  473 (571)
T TIGR02203       403 SLRRQVALVSQDVVLFND-TIANNIAYGRTE--------QADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG  473 (571)
T ss_pred             HHHhhceEEccCcccccc-cHHHHHhcCCCC--------CCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence            788999999999998875 554443321100        0111111111    10000111111 0 0123334567777


Q ss_pred             hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      ||||++||||++++|++++||||||+||+.++..+++.|++++ +++|+|++||+++  ..+.||+|++|++|+++..|+
T Consensus       474 qrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~~g~i~~~g~  550 (571)
T TIGR02203       474 QRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMDDGRIVERGT  550 (571)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEeCCEEEeeCC
Confidence            7777778888888899999999999999999999999999885 4799999999985  468899999999999999999


Q ss_pred             hhHHHH
Q psy13765        259 TDQLVN  264 (606)
Q Consensus       259 ~~~~~~  264 (606)
                      ++++.+
T Consensus       551 ~~~l~~  556 (571)
T TIGR02203       551 HNELLA  556 (571)
T ss_pred             HHHHHH
Confidence            998753

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=100.00  E-value=1.7e-36  Score=344.26  Aligned_cols=216  Identities=25%  Similarity=0.419  Sum_probs=171.2

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Chh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NIN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~  104 (606)
                      .|+++|++|+|+.       ++.+|+|+|+++++||.++|+||||||||||+|+|+|+.+| .+|+|.+||.+.   +..
T Consensus       334 ~I~~~~vsf~y~~-------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p-~~G~I~i~g~~i~~~~~~  405 (588)
T PRK13657        334 AVEFDDVSFSYDN-------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP-QSGRILIDGTDIRTVTRA  405 (588)
T ss_pred             eEEEEEEEEEeCC-------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCCEEEECCEEhhhCCHH
Confidence            6999999999842       24699999999999999999999999999999999999887 599999999764   346


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHH----HHHHHHHHhcCCccc--ccCCCCCCCCch
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKK----RLSIALELINNPRVM--FLDEPTTSNPND  178 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrq----Rv~ia~~L~~~~~~~--~~de~~~~~s~g  178 (606)
                      .+++.++||+|++.+++. |+.+.+.. +-.+        .+-.+.+    ++.+...+-..|+=+  ...|-...+|||
T Consensus       406 ~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~-~~~~--------~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgG  475 (588)
T PRK13657        406 SLRRNIAVVFQDAGLFNR-SIEDNIRV-GRPD--------ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGG  475 (588)
T ss_pred             HHHhheEEEecCcccccc-cHHHHHhc-CCCC--------CCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHH
Confidence            788999999999999875 66554432 2111        1222222    222222222223211  234446678999


Q ss_pred             hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      ||||++|||||+++|++++||||||+||+.++..+.+.|+++. +++|+|++||+++  ..+.+|++++|++|+++..|+
T Consensus       476 q~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~  552 (588)
T PRK13657        476 ERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDNGRVVESGS  552 (588)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCC
Confidence            9999999999999999999999999999999999999999875 4799999999985  357899999999999999999


Q ss_pred             hhHHHH
Q psy13765        259 TDQLVN  264 (606)
Q Consensus       259 ~~~~~~  264 (606)
                      ++++.+
T Consensus       553 ~~~l~~  558 (588)
T PRK13657        553 FDELVA  558 (588)
T ss_pred             HHHHHH
Confidence            988764

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=100.00  E-value=1.4e-36  Score=351.05  Aligned_cols=218  Identities=26%  Similarity=0.390  Sum_probs=171.7

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~  103 (606)
                      ..|+++||+|+|+.      +++.+|+|+|+++++||.++|+||||||||||+|+|+|+.+| .+|+|.+||.+.   +.
T Consensus       454 ~~i~~~~vsf~y~~------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p-~~G~I~idg~~i~~~~~  526 (694)
T TIGR01846       454 GAITFENIRFRYAP------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP-QHGQVLVDGVDLAIADP  526 (694)
T ss_pred             CeEEEEEEEEEcCC------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEehhhCCH
Confidence            36999999999842      335699999999999999999999999999999999999877 599999999864   45


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHH----HHHHHHhcCCcc--cccCCCCCCCCc
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL----SIALELINNPRV--MFLDEPTTSNPN  177 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv----~ia~~L~~~~~~--~~~de~~~~~s~  177 (606)
                      ..+|+.++||+|++.+++. |+.|.+.. +-.        +.+-.+-.++    .+...+...|+=  ...+|...++||
T Consensus       527 ~~~r~~i~~v~q~~~lf~~-ti~eNi~~-~~~--------~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSg  596 (694)
T TIGR01846       527 AWLRRQMGVVLQENVLFSR-SIRDNIAL-CNP--------GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSG  596 (694)
T ss_pred             HHHHHhCeEEccCCeehhh-hHHHHHhc-CCC--------CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCH
Confidence            6788999999999998875 66544432 110        1122221111    111112222221  134566677888


Q ss_pred             hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      |||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|+++|+++. + +.||++++|++|++++.|
T Consensus       597 Gq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~-~-~~~d~ii~l~~G~i~~~g  673 (694)
T TIGR01846       597 GQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLST-V-RACDRIIVLEKGQIAESG  673 (694)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHH-H-HhCCEEEEEeCCEEEEeC
Confidence            88888889999999999999999999999999999999999885 58999999999863 4 679999999999999999


Q ss_pred             ChhHHHH
Q psy13765        258 ATDQLVN  264 (606)
Q Consensus       258 ~~~~~~~  264 (606)
                      +++++.+
T Consensus       674 ~~~~l~~  680 (694)
T TIGR01846       674 RHEELLA  680 (694)
T ss_pred             CHHHHHH
Confidence            9998864

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.8e-37  Score=341.80  Aligned_cols=218  Identities=16%  Similarity=0.301  Sum_probs=171.4

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---  103 (606)
                      ..|+++|+++.+          +.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++...   
T Consensus       264 ~~l~~~~l~~~~----------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-~~G~I~~~g~~~~~~~~  332 (510)
T PRK09700        264 TVFEVRNVTSRD----------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR-AGGEIRLNGKDISPRSP  332 (510)
T ss_pred             cEEEEeCccccC----------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC-CCCeEEECCEECCCCCH
Confidence            359999999752          2389999999999999999999999999999999999876 58999999976532   


Q ss_pred             -hhhcccEEEEccC---CCCCCCCcHHHHHHHcC-Cccc-cCCccccCChH-HHHHHHHHHHHhcCCcc--cccCCCCCC
Q psy13765        104 -NAFRRVSCYIQQD---DRLQPLLTIENVMSLLG-LDES-QNTRSSQLSGG-QKKRLSIALELINNPRV--MFLDEPTTS  174 (606)
Q Consensus       104 -~~~~~~~~yv~Q~---~~l~~~ltv~~~l~~~g-l~~~-~~~~~~~lSgG-qrqRv~ia~~L~~~~~~--~~~de~~~~  174 (606)
                       ...++.++||+|+   ..+++.+|+.+.+.... .... .....+..+.. ++++   +.+++..-++  -..+.+...
T Consensus       333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~l~~~~~~~~~~~  409 (510)
T PRK09700        333 LDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRT---AENQRELLALKCHSVNQNITE  409 (510)
T ss_pred             HHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHH---HHHHHHhcCCCCCCccCcccc
Confidence             2345679999998   46888899877654211 0000 00000001111 2223   3334433334  246899999


Q ss_pred             CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765        175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL  254 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~  254 (606)
                      |||||||||.||+||+.+|++|||||||+|||+.++..+.++|++++++|.|||++|||+. .+.++||++++|++|+++
T Consensus       410 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~  488 (510)
T PRK09700        410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCEGRLT  488 (510)
T ss_pred             CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEE
Confidence            9999999999999999999999999999999999999999999999888999999999976 577899999999999999


Q ss_pred             EEcCh
Q psy13765        255 YQGAT  259 (606)
Q Consensus       255 ~~G~~  259 (606)
                      ..++.
T Consensus       489 ~~~~~  493 (510)
T PRK09700        489 QILTN  493 (510)
T ss_pred             EEecC
Confidence            88865

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1e-36  Score=329.23  Aligned_cols=218  Identities=23%  Similarity=0.346  Sum_probs=181.9

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---  102 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---  102 (606)
                      ...++++|++++|        +..++|+||||++++||++||+|.||||||||+|+|+|.++| .+|+|.+||++..   
T Consensus         6 ~~ll~~~~i~K~F--------ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p-~~G~I~~~G~~~~~~s   76 (500)
T COG1129           6 PPLLELRGISKSF--------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP-DSGEILIDGKPVAFSS   76 (500)
T ss_pred             cceeeeecceEEc--------CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccC-CCceEEECCEEccCCC
Confidence            3468999999997        457899999999999999999999999999999999999887 5999999998753   


Q ss_pred             h-hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc-cccCCCCCCCCchhh
Q psy13765        103 I-NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-MFLDEPTTSNPNDQK  180 (606)
Q Consensus       103 ~-~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~  180 (606)
                      + ......|+.|+|+..+.|++||.+.+. +|-+....  .+-+-  .|+--..|++++..-.+ .-.|.++++||.|||
T Consensus        77 p~~A~~~GI~~V~QEl~L~p~LsVaeNif-Lgre~~~~--~g~id--~~~m~~~A~~~l~~lg~~~~~~~~v~~Lsiaqr  151 (500)
T COG1129          77 PRDALAAGIATVHQELSLVPNLSVAENIF-LGREPTRR--FGLID--RKAMRRRARELLARLGLDIDPDTLVGDLSIAQR  151 (500)
T ss_pred             HHHHHhCCcEEEeechhccCCccHHHHhh-cccccccC--CCccC--HHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHH
Confidence            2 334567999999999999999976654 34332211  11111  12333445555554322 238899999999999


Q ss_pred             hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      |.|+||+||..+++||+||||||.|+...+..+.+++++|+++|.+||++||.++ +++++|||+.+|+||+.+..++
T Consensus       152 Q~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRDG~~v~~~~  228 (500)
T COG1129         152 QMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDGRVVGTRP  228 (500)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeCCEEeeecc
Confidence            9999999999999999999999999999999999999999999999999999986 6999999999999999998887

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=7.4e-37  Score=340.70  Aligned_cols=223  Identities=20%  Similarity=0.327  Sum_probs=175.4

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---  103 (606)
                      ..|+++|+++.+..     .+++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|+.+|+|.++|++...   
T Consensus       256 ~~l~~~~l~~~~~~-----~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~  330 (500)
T TIGR02633       256 VILEARNLTCWDVI-----NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNP  330 (500)
T ss_pred             ceEEEeCCcccccc-----cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCH
Confidence            36999999987521     1235699999999999999999999999999999999999874358999999976531   


Q ss_pred             -hhhcccEEEEccCC---CCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCccc--ccCCCCCCCC
Q psy13765        104 -NAFRRVSCYIQQDD---RLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM--FLDEPTTSNP  176 (606)
Q Consensus       104 -~~~~~~~~yv~Q~~---~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~--~~de~~~~~s  176 (606)
                       ...++.++||+|+.   .+++.+|+.+.+..........  ...+... +++++.   +++..-++-  ..|.+...||
T Consensus       331 ~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~~LS  405 (500)
T TIGR02633       331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCF--KMRIDAAAELQIIG---SAIQRLKVKTASPFLPIGRLS  405 (500)
T ss_pred             HHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhcc--CCcCCHHHHHHHHH---HHHHhcCccCCCccCccccCC
Confidence             23467799999996   5888899877654321111100  0112222 233333   333333332  4688999999


Q ss_pred             chhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEE
Q psy13765        177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ  256 (606)
Q Consensus       177 ~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~  256 (606)
                      ||||||+.||+||+.+|++|+|||||+|||+.++..+.++|++++++|.|||++|||++ .+.++||++++|++|+++..
T Consensus       406 gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~G~i~~~  484 (500)
T TIGR02633       406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGEGKLKGD  484 (500)
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEE
Confidence            99999999999999999999999999999999999999999999888999999999987 57789999999999999987


Q ss_pred             cChh
Q psy13765        257 GATD  260 (606)
Q Consensus       257 G~~~  260 (606)
                      ++.+
T Consensus       485 ~~~~  488 (500)
T TIGR02633       485 FVNH  488 (500)
T ss_pred             Eccc
Confidence            7654

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1e-36  Score=287.80  Aligned_cols=198  Identities=27%  Similarity=0.468  Sum_probs=158.2

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhc
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR  107 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~  107 (606)
                      .+..++++.+|+.      ..+.+|+|+|++|.+||.++++||||||||||||+++|+.+| ..|+|.+||++++...  
T Consensus         3 ~l~~~~~sl~y~g------~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P-~~G~i~l~~r~i~gPg--   73 (259)
T COG4525           3 MLNVSHLSLSYEG------KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP-SRGSIQLNGRRIEGPG--   73 (259)
T ss_pred             eeehhheEEecCC------cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc-ccceEEECCEeccCCC--
Confidence            4567788888642      335699999999999999999999999999999999999887 5999999999875432  


Q ss_pred             ccEEEEccCCCCCCCCcHH----------------------HHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc
Q psy13765        108 RVSCYIQQDDRLQPLLTIE----------------------NVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV  165 (606)
Q Consensus       108 ~~~~yv~Q~~~l~~~ltv~----------------------~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~  165 (606)
                      ..-|.|+|++.++|.+++.                      +++..+||++..++.+-+||||||||+.           
T Consensus        74 aergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvG-----------  142 (259)
T COG4525          74 AERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVG-----------  142 (259)
T ss_pred             ccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHH-----------
Confidence            2348899999999999972                      2333445555555555555555555555           


Q ss_pred             cccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcce
Q psy13765        166 MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQ  244 (606)
Q Consensus       166 ~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~  244 (606)
                                         |||||+.+|++|+||||++.||.-+++++.++|-++.+ .|+.++++||+.++.+ -+++|
T Consensus       143 -------------------iARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAl-flatr  202 (259)
T COG4525         143 -------------------IARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEAL-FLATR  202 (259)
T ss_pred             -------------------HHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHH-hhhhe
Confidence                               55556666999999999999999999999999999876 5999999999988655 68999


Q ss_pred             eeeec--CCcEEEEcChhHHHHH
Q psy13765        245 VYLLS--GGQCLYQGATDQLVNY  265 (606)
Q Consensus       245 v~~L~--~G~~~~~G~~~~~~~~  265 (606)
                      +++|+  .||++..-+++-...|
T Consensus       203 Lvvlsp~pgRvv~~~~~df~rR~  225 (259)
T COG4525         203 LVVLSPGPGRVVERLPLDFARRY  225 (259)
T ss_pred             eEEecCCCceeeEecCCCHHHHh
Confidence            99998  5899998888754444

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=100.00  E-value=1.7e-36  Score=303.02  Aligned_cols=208  Identities=25%  Similarity=0.349  Sum_probs=160.1

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEEC--Cc--cC---
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTN--GH--SR---  101 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~--G~--~~---  101 (606)
                      |+++||++.|+...+ ...++.+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.++  |.  +.   
T Consensus         2 l~~~~l~~~~~~~~~-~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~~~g~~~~~~~~   79 (224)
T TIGR02324         2 LEVEDLSKTFTLHQQ-GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP-DSGRILVRHEGAWVDLAQA   79 (224)
T ss_pred             EEEEeeEEEeecccC-CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEEEecCCCccchhhc
Confidence            789999999843100 00124699999999999999999999999999999999999876 58999998  42  22   


Q ss_pred             Chh---hh-cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCCh-HHHHHHHHHHHHhcCCcc--cccCCCCCC
Q psy13765        102 NIN---AF-RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSG-GQKKRLSIALELINNPRV--MFLDEPTTS  174 (606)
Q Consensus       102 ~~~---~~-~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSg-GqrqRv~ia~~L~~~~~~--~~~de~~~~  174 (606)
                      +..   .. ++.++|++|++.+++.+|+.+.+... +..  .    +... ..++++.   +++..-++  .+.|.+...
T Consensus        80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~-~~~--~----~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~~  149 (224)
T TIGR02324        80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEP-LLE--R----GVPREAARARAR---ELLARLNIPERLWHLPPAT  149 (224)
T ss_pred             CHHHHHHHHhcceEEEecccccCCCccHHHHHHHH-HHH--c----CCCHHHHHHHHH---HHHHHcCCchhhhhCCccc
Confidence            111   12 35699999999999999998776531 110  0    0111 1233333   23332222  135778999


Q ss_pred             CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec
Q psy13765        175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS  249 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~  249 (606)
                      +|+|||||+.||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||+++.+.
T Consensus       150 LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~  223 (224)
T TIGR02324       150 FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT  223 (224)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence            9999999999999999999999999999999999999999999999878999999999965 4667999998763

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=2.4e-36  Score=341.55  Aligned_cols=217  Identities=24%  Similarity=0.362  Sum_probs=172.3

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Chh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NIN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~  104 (606)
                      .|+++|++++|+.      +++.+|+|+|+++++||.++|+||||||||||+++|+|+.+| .+|+|.+||.+.   +..
T Consensus       313 ~I~~~~v~~~y~~------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p-~~G~i~~~g~~~~~~~~~  385 (569)
T PRK10789        313 ELDVNIRQFTYPQ------TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDV-SEGDIRFHDIPLTKLQLD  385 (569)
T ss_pred             cEEEEEEEEECCC------CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCC-CCCEEEECCEEHhhCCHH
Confidence            5899999999742      235799999999999999999999999999999999999877 599999999864   345


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHH----HHHHHHhcCCcc--cccCCCCCCCCch
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL----SIALELINNPRV--MFLDEPTTSNPND  178 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv----~ia~~L~~~~~~--~~~de~~~~~s~g  178 (606)
                      .+++.++||+|++.+++. |+.+.+.. +..+        .+-.+-+.+    .+...+..-|+=  -..+|....+|||
T Consensus       386 ~~~~~i~~v~q~~~lf~~-ti~~Ni~~-~~~~--------~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgG  455 (569)
T PRK10789        386 SWRSRLAVVSQTPFLFSD-TVANNIAL-GRPD--------ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGG  455 (569)
T ss_pred             HHHhheEEEccCCeeccc-cHHHHHhc-CCCC--------CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHH
Confidence            778899999999999875 77665532 2111        121221111    111111122221  1345667789999


Q ss_pred             hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      ||||++|||||+++|++++|||||+|||+.++..+.+.|+++. +|+|+|+++|+++.  .+.+|++++|++|+++..|+
T Consensus       456 q~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~--~~~~d~i~~l~~G~i~~~g~  532 (569)
T PRK10789        456 QKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSA--LTEASEILVMQHGHIAQRGN  532 (569)
T ss_pred             HHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhH--HHcCCEEEEEeCCEEEEecC
Confidence            9999999999999999999999999999999999999999885 58999999999863  47799999999999999999


Q ss_pred             hhHHHH
Q psy13765        259 TDQLVN  264 (606)
Q Consensus       259 ~~~~~~  264 (606)
                      ++++.+
T Consensus       533 ~~~l~~  538 (569)
T PRK10789        533 HDQLAQ  538 (569)
T ss_pred             HHHHHH
Confidence            988764

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=100.00  E-value=3.2e-36  Score=341.11  Aligned_cols=223  Identities=22%  Similarity=0.377  Sum_probs=169.2

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~  103 (606)
                      ..|+++||+++|+.+     .++.+|+|+|++++|||.++|+||||||||||+|+|+|++++ .+|+|.+||.+.   +.
T Consensus       336 ~~i~~~~v~f~y~~~-----~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p-~~G~I~i~g~~i~~~~~  409 (576)
T TIGR02204       336 GEIEFEQVNFAYPAR-----PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDP-QSGRILLDGVDLRQLDP  409 (576)
T ss_pred             ceEEEEEEEEECCCC-----CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC-CCCEEEECCEEHHhcCH
Confidence            369999999998531     236799999999999999999999999999999999999887 599999999764   34


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCc-c-cccCCCCCCCCchhhh
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPR-V-MFLDEPTTSNPNDQKK  181 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~-~-~~~de~~~~~s~g~~k  181 (606)
                      ..+++.++|+||++.+++. |+.+.+.. +-.+..+..+.+    -.+++.+...+-.-|+ + ....|....+||||||
T Consensus       410 ~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~-~~~~~~~~~~~~----~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Q  483 (576)
T TIGR02204       410 AELRARMALVPQDPVLFAA-SVMENIRY-GRPDATDEEVEA----AARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQ  483 (576)
T ss_pred             HHHHHhceEEccCCccccc-cHHHHHhc-CCCCCCHHHHHH----HHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHH
Confidence            6778899999999998875 55443322 111110100000    0111111111111111 1 1234556678888888


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ  261 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~  261 (606)
                      |++||||++++|++++||||||+||+.+++.+.+.|+++. +++|+|++||+++  ..+.+|+++.|++|+++..|++++
T Consensus       484 rl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g~~~~~g~~~~  560 (576)
T TIGR02204       484 RIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQGRIVAQGTHAE  560 (576)
T ss_pred             HHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEeeecHHH
Confidence            8889999999999999999999999999999999999985 4899999999985  357899999999999999999988


Q ss_pred             HHH
Q psy13765        262 LVN  264 (606)
Q Consensus       262 ~~~  264 (606)
                      +.+
T Consensus       561 l~~  563 (576)
T TIGR02204       561 LIA  563 (576)
T ss_pred             HHH
Confidence            753

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=100.00  E-value=4.1e-36  Score=340.51  Aligned_cols=216  Identities=22%  Similarity=0.375  Sum_probs=173.7

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Chh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NIN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~  104 (606)
                      .++++|++++|+.       ++++|+|+|+++++||.++|+||||||||||+++|+|+.++ .+|+|.+||.+.   +..
T Consensus       334 ~i~~~~v~~~y~~-------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~~~~~~~~  405 (585)
T TIGR01192       334 AVEFRHITFEFAN-------SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP-TVGQILIDGIDINTVTRE  405 (585)
T ss_pred             eEEEEEEEEECCC-------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC-CCCEEEECCEEhhhCCHH
Confidence            6999999999742       24689999999999999999999999999999999999877 599999999864   345


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHH----HHHHHHhcCCccc--ccCCCCCCCCch
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL----SIALELINNPRVM--FLDEPTTSNPND  178 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv----~ia~~L~~~~~~~--~~de~~~~~s~g  178 (606)
                      .+++.++||+|++.+++ .|+.+.+.. +..+        .|.-|....    .+...+...|+-+  ..+|....+|||
T Consensus       406 ~~~~~i~~v~q~~~lf~-~ti~~Ni~~-~~~~--------~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgG  475 (585)
T TIGR01192       406 SLRKSIATVFQDAGLFN-RSIRENIRL-GREG--------ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGG  475 (585)
T ss_pred             HHHhheEEEccCCccCc-ccHHHHHhc-CCCC--------CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHH
Confidence            67889999999999887 477665533 2111        122222211    1111122333321  456778889999


Q ss_pred             hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      ||||+.|||||+++|++|+|||||+|||+.++..+.+.|+++. +++|+|+++|+++. + +.||++++|++|+++..|+
T Consensus       476 q~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~-~-~~~d~i~~l~~G~i~~~g~  552 (585)
T TIGR01192       476 ERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLST-V-RNADLVLFLDQGRLIEKGS  552 (585)
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHH-H-HcCCEEEEEECCEEEEECC
Confidence            9999999999999999999999999999999999999999885 48999999999863 4 6799999999999999999


Q ss_pred             hhHHHH
Q psy13765        259 TDQLVN  264 (606)
Q Consensus       259 ~~~~~~  264 (606)
                      .+++.+
T Consensus       553 ~~~l~~  558 (585)
T TIGR01192       553 FQELIQ  558 (585)
T ss_pred             HHHHHH
Confidence            988764

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.1e-37  Score=303.33  Aligned_cols=181  Identities=27%  Similarity=0.492  Sum_probs=163.0

Q ss_pred             ceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC-------ChhhhcccEEEEccCCCCCCCCc
Q psy13765         52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR-------NINAFRRVSCYIQQDDRLQPLLT  124 (606)
Q Consensus        52 L~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~-------~~~~~~~~~~yv~Q~~~l~~~lt  124 (606)
                      -=++++..+.-.++||-|+||||||||+|+|+|+..| .+|.|.+||+..       .....+|++||||||..+||.+|
T Consensus        14 ~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rP-deG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t   92 (352)
T COG4148          14 ALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRP-DEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT   92 (352)
T ss_pred             EEEEeccCCCCceEEEecCCCCChhhHHHHHhccCCc-cccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence            3467777777579999999999999999999999887 599999999742       12345789999999999999999


Q ss_pred             H----------------HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHh
Q psy13765        125 I----------------ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALE  188 (606)
Q Consensus       125 v----------------~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~a  188 (606)
                      |                +++...+|++|..++++..|||||||||+|+|||++.                          
T Consensus        93 VrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~--------------------------  146 (352)
T COG4148          93 VRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTA--------------------------  146 (352)
T ss_pred             EecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcC--------------------------
Confidence            7                6788899999999999999999999999988877777                          


Q ss_pred             hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        189 LINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       189 L~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                          |++|++|||.+.||-....+++-.|++|+++ +.-|+.+||.+. ++.+++|+|++|++|++...|+.+++.+
T Consensus       147 ----P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~GkV~A~g~~e~v~~  218 (352)
T COG4148         147 ----PELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLENGKVKASGPLEEVWG  218 (352)
T ss_pred             ----CCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecCCeEEecCcHHHHhc
Confidence                9999999999999999999999999999987 889999999976 6889999999999999999999998864

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=100.00  E-value=3e-36  Score=319.00  Aligned_cols=216  Identities=26%  Similarity=0.437  Sum_probs=172.3

Q ss_pred             CCCCCCCCCCCCCCCceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCC
Q psy13765         11 SLSSSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGV   90 (606)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~   90 (606)
                      ..++....-.+|.. .-.+.++++++. |.     ..++++|+|+||++++||.++|+||||||||||.|+|.|..+| .
T Consensus       318 ~~p~~~~~m~LP~P-~g~L~Ve~l~~~-PP-----g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p-~  389 (580)
T COG4618         318 ELPAAAERMPLPAP-QGALSVERLTAA-PP-----GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP-T  389 (580)
T ss_pred             hCccccCCCCCCCC-CceeeEeeeeec-CC-----CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccccc-C
Confidence            33334444445543 457999999984 32     3567999999999999999999999999999999999999887 6


Q ss_pred             ccEEEECCcc---CChhhhcccEEEEccCCCCCCCCcHHHHHHHcC-----------------------CccccCCccc-
Q psy13765         91 TGQILTNGHS---RNINAFRRVSCYIQQDDRLQPLLTIENVMSLLG-----------------------LDESQNTRSS-  143 (606)
Q Consensus        91 ~G~I~~~G~~---~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~g-----------------------l~~~~~~~~~-  143 (606)
                      +|.|.+||.+   .+.+++-+++||+||+-.+|+. |+.|.+..++                       +..-.|+.++ 
T Consensus       390 ~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~  468 (580)
T COG4618         390 SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGE  468 (580)
T ss_pred             CCcEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCC
Confidence            9999999975   4567888999999999999987 4433222222                       2222233332 


Q ss_pred             ---cCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy13765        144 ---QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMI  220 (606)
Q Consensus       144 ---~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l  220 (606)
                         .||||||||+++||||..+                              |.+++||||-|+||......+.+.|.++
T Consensus       469 ~G~~LSgGQRQRIaLARAlYG~------------------------------P~lvVLDEPNsNLD~~GE~AL~~Ai~~~  518 (580)
T COG4618         469 GGATLSGGQRQRIALARALYGD------------------------------PFLVVLDEPNSNLDSEGEAALAAAILAA  518 (580)
T ss_pred             CCCCCCchHHHHHHHHHHHcCC------------------------------CcEEEecCCCCCcchhHHHHHHHHHHHH
Confidence               3666666666655555555                              9999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHHHHH
Q psy13765        221 SQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLS  267 (606)
Q Consensus       221 ~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~~f~  267 (606)
                      +++|.|+|+++|.|+  +...+|+|++|++|++..+|+.+|++....
T Consensus       519 k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~~~FG~r~eVLa~~~  563 (580)
T COG4618         519 KARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLAKVL  563 (580)
T ss_pred             HHcCCEEEEEecCHH--HHhhcceeeeecCChHHhcCCHHHHHHHhc
Confidence            999999999999987  468999999999999999999999988653

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=100.00  E-value=7.4e-36  Score=285.36  Aligned_cols=163  Identities=33%  Similarity=0.493  Sum_probs=137.7

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcc
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR  108 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~  108 (606)
                      |+++|++++++       +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.        +
T Consensus         1 i~~~~~~~~~~-------~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~--------~   64 (166)
T cd03223           1 IELENLSLATP-------DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEG--------E   64 (166)
T ss_pred             CEEEEEEEEcC-------CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCC--------c
Confidence            46899999873       125699999999999999999999999999999999999876 5999999873        5


Q ss_pred             cEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHh
Q psy13765        109 VSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALE  188 (606)
Q Consensus       109 ~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~a  188 (606)
                      .++|++|++.++ ..|+.+.+...        .+.+||||||||+++|++|+.+                          
T Consensus        65 ~i~~~~q~~~~~-~~tv~~nl~~~--------~~~~LS~G~~~rv~laral~~~--------------------------  109 (166)
T cd03223          65 DLLFLPQRPYLP-LGTLREQLIYP--------WDDVLSGGEQQRLAFARLLLHK--------------------------  109 (166)
T ss_pred             eEEEECCCCccc-cccHHHHhhcc--------CCCCCCHHHHHHHHHHHHHHcC--------------------------
Confidence            799999998765 46887665431        3567888888888866666665                          


Q ss_pred             hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCC
Q psy13765        189 LINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGG  251 (606)
Q Consensus       189 L~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G  251 (606)
                          |++++|||||+|||+.++..+.+.++++   ++|+|++||++. . .+.||++++|++|
T Consensus       110 ----p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~-~-~~~~d~i~~l~~~  163 (166)
T cd03223         110 ----PKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS-L-WKFHDRVLDLDGE  163 (166)
T ss_pred             ----CCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh-H-HhhCCEEEEEcCC
Confidence                9999999999999999999999999876   689999999975 3 4799999999864

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=100.00  E-value=3.5e-36  Score=293.44  Aligned_cols=177  Identities=28%  Similarity=0.429  Sum_probs=137.9

Q ss_pred             ccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-----hhhhcccEEEEccCCC--CC
Q psy13765         48 PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-----INAFRRVSCYIQQDDR--LQ  120 (606)
Q Consensus        48 ~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~-----~~~~~~~~~yv~Q~~~--l~  120 (606)
                      ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++..     ...+++.++|++|++.  ++
T Consensus         4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   82 (190)
T TIGR01166         4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP-QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF   82 (190)
T ss_pred             ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence            45799999999999999999999999999999999999876 5999999998653     1244677999999973  44


Q ss_pred             CCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEe
Q psy13765        121 PLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLD  199 (606)
Q Consensus       121 ~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLD  199 (606)
                       ..|+.+.+......       ...+..+ ++++.-+.+.+.-.  -..|.+...+|+|||||+.||+||+.+|++++||
T Consensus        83 -~~tv~~nl~~~~~~-------~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~llllD  152 (190)
T TIGR01166        83 -AADVDQDVAFGPLN-------LGLSEAEVERRVREALTAVGAS--GLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLD  152 (190)
T ss_pred             -cccHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHcCch--hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence             46876655431100       0112111 23332222222211  1468888899999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765        200 EPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS  235 (606)
Q Consensus       200 EPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~  235 (606)
                      |||+|||+.++..+.+.|++++++|+|||+++|++.
T Consensus       153 EPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~  188 (190)
T TIGR01166       153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD  188 (190)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence            999999999999999999999888999999999975

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-35  Score=324.59  Aligned_cols=211  Identities=25%  Similarity=0.375  Sum_probs=164.8

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhc
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR  107 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~  107 (606)
                      .++++||++.+..+     ..+.+|+|+||++++||+++|+|||||||||||++|+|+.++ .+|+|.++|.+.      
T Consensus        21 mL~lknL~~~~~~~-----~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P-~sGeI~I~G~~~------   88 (549)
T PRK13545         21 FDKLKDLFFRSKDG-----EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP-NKGTVDIKGSAA------   88 (549)
T ss_pred             eeEEEEEEEecCCC-----ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC-CceEEEECCEee------
Confidence            57888888776321     225699999999999999999999999999999999999876 599999999641      


Q ss_pred             ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHH
Q psy13765        108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSI  185 (606)
Q Consensus       108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~I  185 (606)
                          ++.+...+.+.+|+.+.+.......       +++..+ ++++.   +++...++- .+|.+...+|||||||+.|
T Consensus        89 ----~i~~~~~l~~~lTV~EnL~l~~~~~-------~~~~~e~~e~i~---elLe~lgL~~~ld~~~~~LSGGQrQRVaL  154 (549)
T PRK13545         89 ----LIAISSGLNGQLTGIENIELKGLMM-------GLTKEKIKEIIP---EIIEFADIGKFIYQPVKTYSSGMKSRLGF  154 (549)
T ss_pred             ----eEEeccccCCCCcHHHHHHhhhhhc-------CCCHHHHHHHHH---HHHHHcCChhHhhCCcccCCHHHHHHHHH
Confidence                1223345566778877654322100       122222 22222   222222232 4678889999999999999


Q ss_pred             HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHHH
Q psy13765        186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNY  265 (606)
Q Consensus       186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~~  265 (606)
                      |+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+.++||++++|++|++++.|+++++..-
T Consensus       155 ArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~~~  233 (549)
T PRK13545        155 AISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVVDH  233 (549)
T ss_pred             HHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence            99999999999999999999999999999999999878999999999976 57789999999999999999999887653

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=3.5e-36  Score=335.33  Aligned_cols=217  Identities=20%  Similarity=0.342  Sum_probs=172.6

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---  103 (606)
                      ..++++|+++             .+|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++...   
T Consensus       256 ~~l~~~~l~~-------------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p-~~G~I~~~g~~i~~~~~  321 (501)
T PRK10762        256 VRLKVDNLSG-------------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPR-TSGYVTLDGHEVVTRSP  321 (501)
T ss_pred             cEEEEeCccc-------------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCCCCH
Confidence            3588888873             269999999999999999999999999999999999876 58999999976531   


Q ss_pred             -hhhcccEEEEccCC---CCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc--cccCCCCCCCC
Q psy13765        104 -NAFRRVSCYIQQDD---RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV--MFLDEPTTSNP  176 (606)
Q Consensus       104 -~~~~~~~~yv~Q~~---~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~--~~~de~~~~~s  176 (606)
                       ...++.+|||+|++   .+++.+|+.+.+..-..... ....+.++..+ +++   +.+++..-.+  -..|.+...||
T Consensus       322 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~---~~~~l~~~~l~~~~~~~~~~~LS  397 (501)
T PRK10762        322 QDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYF-SRAGGSLKHADEQQA---VSDFIRLFNIKTPSMEQAIGLLS  397 (501)
T ss_pred             HHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhh-cccccccCHHHHHHH---HHHHHHhcCCCCCCccCchhhCC
Confidence             23456799999996   57888999776643111100 00001122222 223   3334443333  14789999999


Q ss_pred             chhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEE
Q psy13765        177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ  256 (606)
Q Consensus       177 ~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~  256 (606)
                      |||||||.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++|||+. .+.++||++++|++|+++..
T Consensus       398 gGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~  476 (501)
T PRK10762        398 GGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHEGRISGE  476 (501)
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEE
Confidence            99999999999999999999999999999999999999999999888999999999986 57799999999999999999


Q ss_pred             cChhHH
Q psy13765        257 GATDQL  262 (606)
Q Consensus       257 G~~~~~  262 (606)
                      |+++++
T Consensus       477 ~~~~~~  482 (501)
T PRK10762        477 FTREQA  482 (501)
T ss_pred             eccccC
Confidence            987764

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=100.00  E-value=5.3e-36  Score=299.73  Aligned_cols=198  Identities=24%  Similarity=0.355  Sum_probs=156.0

Q ss_pred             EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCC--CCcHHHHHHHcCC
Q psy13765         57 GRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQP--LLTIENVMSLLGL  134 (606)
Q Consensus        57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~--~ltv~~~l~~~gl  134 (606)
                      +++++||+++|+||||||||||+++|+|+.++ .+|+|.+||++..  ..++.++|++|++.+++  .+|+.+.+.. +.
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~-~~   76 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPP-AKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMS-GR   76 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHh-cc
Confidence            46899999999999999999999999999876 5999999998653  34677999999987643  3678766543 21


Q ss_pred             ccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHH
Q psy13765        135 DESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCI  214 (606)
Q Consensus       135 ~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~  214 (606)
                      ...... ...-...+++++.-+.+.+.-.+  ..|.+...+|+|||||+.||+||+.+|+++++||||+|||+.++..+.
T Consensus        77 ~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~  153 (223)
T TIGR03771        77 TGHIGW-LRRPCVADFAAVRDALRRVGLTE--LADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLT  153 (223)
T ss_pred             cccccc-ccCCcHHHHHHHHHHHHHhCCch--hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence            110000 00111223444443344433221  457788899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765        215 KLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       215 ~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                      +.|++++++|+|+|+++|+++ .+.+.||+++++ +|++++.|+++++.
T Consensus       154 ~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~~  200 (223)
T TIGR03771       154 ELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQLQ  200 (223)
T ss_pred             HHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence            999999878999999999976 577899999999 89999999988764

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.6e-36  Score=334.38  Aligned_cols=217  Identities=16%  Similarity=0.313  Sum_probs=172.2

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---  103 (606)
                      ..++++|+++            +.+++|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++...   
T Consensus       256 ~~l~~~~~~~------------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p-~~G~i~~~g~~~~~~~~  322 (501)
T PRK11288        256 VRLRLDGLKG------------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRR-TAGQVYLDGKPIDIRSP  322 (501)
T ss_pred             cEEEEecccc------------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC-CCceEEECCEECCCCCH
Confidence            3588888873            2489999999999999999999999999999999999876 58999999976431   


Q ss_pred             -hhhcccEEEEccCC---CCCCCCcHHHHHHHcCCccccCCccc-cCChH-HHHHHHHHHHHhcCCcc--cccCCCCCCC
Q psy13765        104 -NAFRRVSCYIQQDD---RLQPLLTIENVMSLLGLDESQNTRSS-QLSGG-QKKRLSIALELINNPRV--MFLDEPTTSN  175 (606)
Q Consensus       104 -~~~~~~~~yv~Q~~---~l~~~ltv~~~l~~~gl~~~~~~~~~-~lSgG-qrqRv~ia~~L~~~~~~--~~~de~~~~~  175 (606)
                       ...++.++|++|++   .+++.+|+.+.+.. +..... ...+ -.+.. ++++   +.+++..-++  -..|.+...|
T Consensus       323 ~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~-~~~~~~-~~~~~~~~~~~~~~~---~~~~l~~~~l~~~~~~~~~~~L  397 (501)
T PRK11288        323 RDAIRAGIMLCPEDRKAEGIIPVHSVADNINI-SARRHH-LRAGCLINNRWEAEN---ADRFIRSLNIKTPSREQLIMNL  397 (501)
T ss_pred             HHHHhCCCEEcCcCHhhCCCcCCCCHHHHhcc-ccchhh-cccccccChHHHHHH---HHHHHHhcCcccCCccCccccC
Confidence             23456799999996   48888998776542 211100 0000 01111 1222   3344444344  2578999999


Q ss_pred             CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765        176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY  255 (606)
Q Consensus       176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~  255 (606)
                      ||||||||.||+||+.+|++|||||||+|||+.++.+++++|++++++|.|||++|||+. .+.++||++++|++|++++
T Consensus       398 SgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~g~i~~  476 (501)
T PRK11288        398 SGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMREGRIAG  476 (501)
T ss_pred             CHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEECCEEEE
Confidence            999999999999999999999999999999999999999999999988999999999976 5779999999999999999


Q ss_pred             EcChhHH
Q psy13765        256 QGATDQL  262 (606)
Q Consensus       256 ~G~~~~~  262 (606)
                      .|+++++
T Consensus       477 ~~~~~~~  483 (501)
T PRK11288        477 ELAREQA  483 (501)
T ss_pred             EEccccC
Confidence            9987653

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=100.00  E-value=3.5e-35  Score=336.05  Aligned_cols=218  Identities=25%  Similarity=0.381  Sum_probs=174.8

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---h
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---N  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~  104 (606)
                      .++++|++++|+.+    .+.+.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.+||++...   +
T Consensus         4 ~l~~~nl~~~y~~~----~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-~~G~i~~~g~~i~~~~~~   78 (648)
T PRK10535          4 LLELKDIRRSYPSG----EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKP-TSGTYRVAGQDVATLDAD   78 (648)
T ss_pred             EEEEeeEEEEeCCC----CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEcCcCCHH
Confidence            58999999998421    1235699999999999999999999999999999999999876 59999999986532   2


Q ss_pred             hh----cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCch
Q psy13765        105 AF----RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPND  178 (606)
Q Consensus       105 ~~----~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g  178 (606)
                      ++    ++.++|++|++.+++.+|+.+.+.... .   ..   ..+..+ ++++   .+++..-++- ..|.+...+|+|
T Consensus        79 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~-~---~~---~~~~~~~~~~~---~~~l~~lgl~~~~~~~~~~LS~G  148 (648)
T PRK10535         79 ALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPA-V---YA---GLERKQRLLRA---QELLQRLGLEDRVEYQPSQLSGG  148 (648)
T ss_pred             HHHHHHhccEEEEeCCcccCCCCCHHHHHHHHH-H---Hc---CCCHHHHHHHH---HHHHHHCCChhhhcCCcccCCHH
Confidence            22    467999999999999999766554311 0   00   112222 2333   2333222221 468888999999


Q ss_pred             hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      |+||+.|||||+.+|++|+|||||+|||+.++..+.++|++++++|+|+|+++|+++ .+ +.|||+++|++|++++.|+
T Consensus       149 q~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~-~~-~~~d~i~~l~~G~i~~~g~  226 (648)
T PRK10535        149 QQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ-VA-AQAERVIEIRDGEIVRNPP  226 (648)
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HH-HhCCEEEEEECCEEEeecC
Confidence            999999999999999999999999999999999999999999878999999999976 34 6799999999999999999


Q ss_pred             hhHH
Q psy13765        259 TDQL  262 (606)
Q Consensus       259 ~~~~  262 (606)
                      +++.
T Consensus       227 ~~~~  230 (648)
T PRK10535        227 AQEK  230 (648)
T ss_pred             cccc
Confidence            8754

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=100.00  E-value=1.1e-35  Score=334.86  Aligned_cols=194  Identities=22%  Similarity=0.301  Sum_probs=152.6

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---h
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---I  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~  103 (606)
                      ..++++|++|+|+.       ++++|+|+|+++++||.++|+||||||||||+++|+|+++| .+|+|.+||.+.+   .
T Consensus       321 ~~i~~~~v~f~y~~-------~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~~~~~~~  392 (547)
T PRK10522        321 QTLELRNVTFAYQD-------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP-QSGEILLDGKPVTAEQP  392 (547)
T ss_pred             ceEEEEEEEEEeCC-------CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEECCCCCH
Confidence            36999999999852       24699999999999999999999999999999999999877 5999999998753   4


Q ss_pred             hhhcccEEEEccCCCCCCCCcH-----------HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCC-
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTI-----------ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEP-  171 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv-----------~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~-  171 (606)
                      ..+++.++||+|++.+++....           ++.++.+++.+..+                           ..+.. 
T Consensus       393 ~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~---------------------------~~~~~~  445 (547)
T PRK10522        393 EDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLE---------------------------LEDGRI  445 (547)
T ss_pred             HHHhhheEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhh---------------------------ccccCC
Confidence            5678899999999988765321           12222333322111                           01110 


Q ss_pred             -CCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeec
Q psy13765        172 -TTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLS  249 (606)
Q Consensus       172 -~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~  249 (606)
                       ...+|||||||++|||||+++|++|+||||||+||+.++..+.+.+.+..+ +|+|+|+++|+++  ..+.||++++|+
T Consensus       446 ~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~  523 (547)
T PRK10522        446 SNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMR  523 (547)
T ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEE
Confidence             235666666666677777777999999999999999999999999986654 5899999999975  357899999999


Q ss_pred             CCcEEEEc
Q psy13765        250 GGQCLYQG  257 (606)
Q Consensus       250 ~G~~~~~G  257 (606)
                      +|++++..
T Consensus       524 ~G~i~e~~  531 (547)
T PRK10522        524 NGQLSELT  531 (547)
T ss_pred             CCEEEEec
Confidence            99998763

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=100.00  E-value=1.3e-35  Score=292.61  Aligned_cols=195  Identities=26%  Similarity=0.417  Sum_probs=150.8

Q ss_pred             EEEEeeEEEEecCCccccc--ccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765         29 IKFKDLTYTVSTGLGFKQE--PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF  106 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~--~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~  106 (606)
                      ++++||++++..+     +  .+.+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|        
T Consensus         1 l~~~~l~~~~~~~-----~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~-~~G~i~~~g--------   66 (204)
T cd03250           1 ISVEDASFTWDSG-----EQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK-LSGSVSVPG--------   66 (204)
T ss_pred             CEEeEEEEecCCC-----CccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCC-CCCeEEEcC--------
Confidence            4689999987321     1  13699999999999999999999999999999999999876 599999998        


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHH----HHHHHHhcCCc--ccccCCCCCCCCchhh
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL----SIALELINNPR--VMFLDEPTTSNPNDQK  180 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv----~ia~~L~~~~~--~~~~de~~~~~s~g~~  180 (606)
                        .++|++|++.+++ .|+.+.+.. +..         .+.-..++.    .+...+-..|.  -...+++...+|+|||
T Consensus        67 --~i~~~~q~~~l~~-~t~~enl~~-~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~  133 (204)
T cd03250          67 --SIAYVSQEPWIQN-GTIRENILF-GKP---------FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQK  133 (204)
T ss_pred             --EEEEEecCchhcc-CcHHHHhcc-CCC---------cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHH
Confidence              5999999999885 577655533 111         011011111    11111211111  1135778889999999


Q ss_pred             hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765        181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIK-LLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ  252 (606)
Q Consensus       181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~-~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~  252 (606)
                      ||+.||+||+.+|++++|||||+|||+.++..+.+ ++++++++|+|||+++|++. .+.. +|++++|++|+
T Consensus       134 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~~G~  204 (204)
T cd03250         134 QRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLDNGR  204 (204)
T ss_pred             HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEeCCC
Confidence            99999999999999999999999999999999998 56777666899999999986 4545 99999999885

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=5.6e-36  Score=334.26  Aligned_cols=214  Identities=19%  Similarity=0.295  Sum_probs=169.4

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---h
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---N  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~  104 (606)
                      .|+++|++.             .+|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++...   .
T Consensus       268 ~l~~~~l~~-------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p-~~G~i~~~g~~i~~~~~~  333 (510)
T PRK15439        268 VLTVEDLTG-------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA-RGGRIMLNGKEINALSTA  333 (510)
T ss_pred             eEEEeCCCC-------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-CCcEEEECCEECCCCCHH
Confidence            588899872             159999999999999999999999999999999999876 58999999986532   1


Q ss_pred             -hhcccEEEEccCC---CCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc--cccCCCCCCCCch
Q psy13765        105 -AFRRVSCYIQQDD---RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV--MFLDEPTTSNPND  178 (606)
Q Consensus       105 -~~~~~~~yv~Q~~---~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~--~~~de~~~~~s~g  178 (606)
                       ..++.++|++|++   .+++.+|+.+.+........ ... .. ...+++++   .+++..-.+  -..|.+...||||
T Consensus       334 ~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~-~~~-~~-~~~~~~~~---~~~l~~~~l~~~~~~~~~~~LSgG  407 (510)
T PRK15439        334 QRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRR-GFW-IK-PARENAVL---ERYRRALNIKFNHAEQAARTLSGG  407 (510)
T ss_pred             HHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhh-ccc-cC-hHHHHHHH---HHHHHHcCCCCCCccCccccCCcH
Confidence             2346799999984   47888888655432111000 000 00 11233333   333333333  2468999999999


Q ss_pred             hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      |||||.||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++|||+. .+.++||++++|++|+++..|+
T Consensus       408 ~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~  486 (510)
T PRK15439        408 NQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQGEISGALT  486 (510)
T ss_pred             HHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEc
Confidence            999999999999999999999999999999999999999999888999999999987 5778999999999999999998


Q ss_pred             hhHH
Q psy13765        259 TDQL  262 (606)
Q Consensus       259 ~~~~  262 (606)
                      ++++
T Consensus       487 ~~~~  490 (510)
T PRK15439        487 GAAI  490 (510)
T ss_pred             cccC
Confidence            7654

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=100.00  E-value=1.3e-35  Score=295.52  Aligned_cols=202  Identities=24%  Similarity=0.344  Sum_probs=154.2

Q ss_pred             EEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh------
Q psy13765         30 KFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI------  103 (606)
Q Consensus        30 ~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~------  103 (606)
                      .+.|+++.++       +.+++++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...      
T Consensus         2 ~~~~~~~~~~-------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~   73 (218)
T cd03290           2 QVTNGYFSWG-------SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT-LEGKVHWSNKNESEPSFEAT   73 (218)
T ss_pred             eeeeeEEecC-------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCeEEECCccccccccccc
Confidence            4678888863       235799999999999999999999999999999999999876 59999999976421      


Q ss_pred             -hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHH---hcC-Ccc--cccCCCCCCCC
Q psy13765        104 -NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALEL---INN-PRV--MFLDEPTTSNP  176 (606)
Q Consensus       104 -~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L---~~~-~~~--~~~de~~~~~s  176 (606)
                       ...++.++|++|++.+++ .|+.+.+....  .        .+.-+.+++.-+..+   +.. |.-  -.++++...+|
T Consensus        74 ~~~~~~~i~~~~q~~~~~~-~t~~~nl~~~~--~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS  142 (218)
T cd03290          74 RSRNRYSVAYAAQKPWLLN-ATVEENITFGS--P--------FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLS  142 (218)
T ss_pred             chhhcceEEEEcCCCcccc-ccHHHHHhhcC--c--------CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCC
Confidence             123567999999998874 67766554321  0        111111222211111   110 100  12456788999


Q ss_pred             chhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765        177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIK--LLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ  252 (606)
Q Consensus       177 ~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~--~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~  252 (606)
                      +|||||+.||+||+.+|++|+|||||+|||+.++..+++  +++.++++|.|+|+++|+++. + ..+|++++|++|+
T Consensus       143 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~~G~  218 (218)
T cd03290         143 GGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-L-PHADWIIAMKDGS  218 (218)
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-H-hhCCEEEEecCCC
Confidence            999999999999999999999999999999999999998  677776678999999999874 5 5799999999884

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=8.9e-36  Score=364.31  Aligned_cols=220  Identities=24%  Similarity=0.371  Sum_probs=168.1

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC------------------
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG------------------   89 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~------------------   89 (606)
                      .|+++||+|+|+.+     .++++|+|+|++|++|+.+||+||||||||||+++|.|++.|.                  
T Consensus      1165 ~I~f~nVsF~Y~~~-----~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~ 1239 (1466)
T PTZ00265       1165 KIEIMDVNFRYISR-----PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNE 1239 (1466)
T ss_pred             eEEEEEEEEECCCC-----CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccc
Confidence            69999999998632     2357999999999999999999999999999999999998762                  


Q ss_pred             -----------------------------------CccEEEECCccC---ChhhhcccEEEEccCCCCCCCCcHHHHHHH
Q psy13765         90 -----------------------------------VTGQILTNGHSR---NINAFRRVSCYIQQDDRLQPLLTIENVMSL  131 (606)
Q Consensus        90 -----------------------------------~~G~I~~~G~~~---~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~  131 (606)
                                                         .+|+|++||.++   +.+.+|+.+|||+|++.+|+. |+.|.+..
T Consensus      1240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~ 1318 (1466)
T PTZ00265       1240 QDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKF 1318 (1466)
T ss_pred             cccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhc
Confidence                                               489999999864   557889999999999999864 65444332


Q ss_pred             cCCccccCCccccCChHHHHHHHH----HHHHhcCCccc--ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCC
Q psy13765        132 LGLDESQNTRSSQLSGGQKKRLSI----ALELINNPRVM--FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL  205 (606)
Q Consensus       132 ~gl~~~~~~~~~~lSgGqrqRv~i----a~~L~~~~~~~--~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgL  205 (606)
                       |..+        .|-.|-.+++-    ..-+..-|+=+  ...|....||||||||++|||||+++|+||+||||||+|
T Consensus      1319 -g~~~--------at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaL 1389 (1466)
T PTZ00265       1319 -GKED--------ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSL 1389 (1466)
T ss_pred             -CCCC--------CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccc
Confidence             2111        12222222111    01111112211  223455567777777777777888889999999999999


Q ss_pred             CHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHhhcceeeeecC----CcEE-EEcChhHHHH
Q psy13765        206 DSQSCSQCIKLLKMIS-QQGRTIICTIHQPSATLFQMFDQVYLLSG----GQCL-YQGATDQLVN  264 (606)
Q Consensus       206 D~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~i~~~~D~v~~L~~----G~~~-~~G~~~~~~~  264 (606)
                      |+.+...|.+.|+++. .+++|+|+++|+++.  .+.||+|++|++    |+++ +.|+++++++
T Consensus      1390 D~~sE~~I~~~L~~~~~~~~~TvIiIaHRlst--i~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265       1390 DSNSEKLIEKTIVDIKDKADKTIITIAHRIAS--IKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred             CHHHHHHHHHHHHHHhccCCCEEEEEechHHH--HHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence            9999999999999986 368999999999863  478999999998    9955 8999999864

>KOG0055|consensus

Probab=100.00  E-value=6.9e-36  Score=345.54  Aligned_cols=199  Identities=31%  Similarity=0.495  Sum_probs=165.5

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~  103 (606)
                      -.|+++||+|+||.+     .+.++|+|+|+++++|+.+||+|||||||||.+.+|-+++.| ..|+|.+||.++   +.
T Consensus       986 G~I~~~~V~F~YPsR-----P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp-~~G~V~IDg~dik~lnl 1059 (1228)
T KOG0055|consen  986 GDIEFRNVSFAYPTR-----PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDP-DAGKVKIDGVDIKDLNL 1059 (1228)
T ss_pred             eEEEEeeeEeeCCCC-----CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCC-CCCeEEECCcccccCCH
Confidence            479999999999854     467899999999999999999999999999999999999887 599999999864   56


Q ss_pred             hhhcccEEEEccCCCCCCCCcHH------------HHHHHc--------------CCccccCCccccCChHHHHHHHHHH
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIE------------NVMSLL--------------GLDESQNTRSSQLSGGQKKRLSIAL  157 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~------------~~l~~~--------------gl~~~~~~~~~~lSgGqrqRv~ia~  157 (606)
                      +.+|+++|.|.|+|.||...--|            |+.+.+              |++...+.+..+||||||||++|||
T Consensus      1060 ~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIAR 1139 (1228)
T KOG0055|consen 1060 KWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIAR 1139 (1228)
T ss_pred             HHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHH
Confidence            78899999999999998753333            333322              2333333344456777776666555


Q ss_pred             HHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q psy13765        158 ELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSAT  237 (606)
Q Consensus       158 ~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~  237 (606)
                      |+++|                              |+||+|||.||+||+++.+.+-+.|.+.. +|+|.|++.|+++. 
T Consensus      1140 AilRn------------------------------PkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLST- 1187 (1228)
T KOG0055|consen 1140 AILRN------------------------------PKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLST- 1187 (1228)
T ss_pred             HHHcC------------------------------CCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhh-
Confidence            55555                              99999999999999999999999999875 48999999999874 


Q ss_pred             HHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        238 LFQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       238 i~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                       .+.||.|.++++|++++.|+++++++
T Consensus      1188 -IqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1188 -IQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred             -hhcCCEEEEEECCEEEecccHHHHHh
Confidence             48999999999999999999999986

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-35  Score=291.47  Aligned_cols=220  Identities=24%  Similarity=0.395  Sum_probs=163.7

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---  102 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---  102 (606)
                      ..-|+++|+++.+        ++|++|+|+|++|++||-.+|+|||||||||||++++|..++. +|.+.+.|+...   
T Consensus        29 ~~li~l~~v~v~r--------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps-sg~~~~~G~~~G~~~   99 (257)
T COG1119          29 EPLIELKNVSVRR--------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS-SGDVTLLGRRFGKGE   99 (257)
T ss_pred             cceEEecceEEEE--------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC-CCceeeeeeeccCCc
Confidence            3569999999986        5689999999999999999999999999999999999998875 999999998642   


Q ss_pred             h-hhhcccEEEEccC--CCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchh
Q psy13765        103 I-NAFRRVSCYIQQD--DRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQ  179 (606)
Q Consensus       103 ~-~~~~~~~~yv~Q~--~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~  179 (606)
                      . .++|+.||+|.-.  ..+.+..++.+++-- |........-..++.-++.++.-..+++.-.+  +.|.|...||.||
T Consensus       100 ~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlS-g~~~siG~y~~~~~~~~~~~a~~lle~~g~~~--la~r~~~~LS~Ge  176 (257)
T COG1119         100 TIFELRKRIGLVSSELHERFRVRETVRDVVLS-GFFASIGIYQEDLTAEDLAAAQWLLELLGAKH--LADRPFGSLSQGE  176 (257)
T ss_pred             chHHHHHHhCccCHHHHhhcccccccceeeee-cccccccccccCCCHHHHHHHHHHHHHcchhh--hccCchhhcCHhH
Confidence            2 6789999999742  233333444333211 11110000001233333333332222222211  5566777777777


Q ss_pred             hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ--GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~--g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      |||+-|||||+++|++|||||||+|||...++.+.+.|.+++..  +.++|++||+++ ++-..+++++++++|+++++|
T Consensus       177 ~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~~g~v~~~g  255 (257)
T COG1119         177 QRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKEGEVVAQG  255 (257)
T ss_pred             HHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEeeCCceeecc
Confidence            77777777888889999999999999999999999999999875  789999999977 578999999999999999987


Q ss_pred             C
Q psy13765        258 A  258 (606)
Q Consensus       258 ~  258 (606)
                      .
T Consensus       256 ~  256 (257)
T COG1119         256 K  256 (257)
T ss_pred             c
Confidence            4

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=100.00  E-value=6.7e-35  Score=301.31  Aligned_cols=208  Identities=22%  Similarity=0.308  Sum_probs=159.0

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhh
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA  105 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~  105 (606)
                      ...|+++|+++.          .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|       
T Consensus        37 ~~~l~i~nls~~----------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p-~~G~I~i~g-------   98 (282)
T cd03291          37 DNNLFFSNLCLV----------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP-SEGKIKHSG-------   98 (282)
T ss_pred             CCeEEEEEEEEe----------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECC-------
Confidence            456899999984          14699999999999999999999999999999999999876 599999988       


Q ss_pred             hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc--ccCCCCCCCCchhhhHH
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM--FLDEPTTSNPNDQKKRL  183 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~--~~de~~~~~s~g~~krl  183 (606)
                         .++|++|++.+++. |+.+.+.. +...  ..  ... ....+++.+...+-..|+..  .++++...+|+|||||+
T Consensus        99 ---~i~yv~q~~~l~~~-tv~enl~~-~~~~--~~--~~~-~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv  168 (282)
T cd03291          99 ---RISFSSQFSWIMPG-TIKENIIF-GVSY--DE--YRY-KSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARI  168 (282)
T ss_pred             ---EEEEEeCccccccc-CHHHHhhc-cccc--CH--HHH-HHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHH
Confidence               38999999988875 77665442 1100  00  000 00001111111111111111  34566789999999999


Q ss_pred             HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765        184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL-KMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL  262 (606)
Q Consensus       184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l-~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~  262 (606)
                      .||+||+.+|++++|||||+|||+.++..+.+.+ ++++ ++.|||+++|++.. + ..||++++|++|++++.|+++++
T Consensus       169 ~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~~  245 (282)
T cd03291         169 SLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHEGSSYFYGTFSEL  245 (282)
T ss_pred             HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999999999999999864 5554 47999999999874 4 68999999999999999999887


Q ss_pred             HH
Q psy13765        263 VN  264 (606)
Q Consensus       263 ~~  264 (606)
                      ..
T Consensus       246 ~~  247 (282)
T cd03291         246 QS  247 (282)
T ss_pred             Hh
Confidence            53

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=1.5e-35  Score=329.38  Aligned_cols=218  Identities=20%  Similarity=0.300  Sum_probs=167.3

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC----
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN----  102 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~----  102 (606)
                      ..|+++|+++.|+        ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++..+|+|.++|++..    
T Consensus       259 ~~l~~~~l~~~~~--------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~  330 (490)
T PRK10938        259 PRIVLNNGVVSYN--------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGET  330 (490)
T ss_pred             ceEEEeceEEEEC--------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCC
Confidence            4699999999872        3569999999999999999999999999999999999865324899999997542    


Q ss_pred             hhhhcccEEEEccCCCCCC--CCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc--ccCCCCCCCCch
Q psy13765        103 INAFRRVSCYIQQDDRLQP--LLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM--FLDEPTTSNPND  178 (606)
Q Consensus       103 ~~~~~~~~~yv~Q~~~l~~--~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~--~~de~~~~~s~g  178 (606)
                      ....++.++|++|++.+++  ..++++++... ...... .......-+++++.   +++..-.+-  .+|.+...||||
T Consensus       331 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~~LSgG  405 (490)
T PRK10938        331 IWDIKKHIGYVSSSLHLDYRVSTSVRNVILSG-FFDSIG-IYQAVSDRQQKLAQ---QWLDILGIDKRTADAPFHSLSWG  405 (490)
T ss_pred             HHHHHhhceEECHHHHhhcccCCcHHHHHHhc-cccccc-cccCCCHHHHHHHH---HHHHHcCCchhhccCchhhCCHH
Confidence            1234577999999976544  35777765431 111000 00111222233333   333333332  468899999999


Q ss_pred             hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCchHHHh-hcceeeeecCCcEEEE
Q psy13765        179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQG-RTIICTIHQPSATLFQ-MFDQVYLLSGGQCLYQ  256 (606)
Q Consensus       179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g-~tii~~~H~~~~~i~~-~~D~v~~L~~G~~~~~  256 (606)
                      |||||.||+||+.+|++|+|||||+|||+.++..+.+.|++++++| .|||++|||++ .+.+ .+|++++|++|++++.
T Consensus       406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~G~i~~~  484 (490)
T PRK10938        406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPDGDIYRY  484 (490)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecCCceEEe
Confidence            9999999999999999999999999999999999999999998875 57999999987 4555 5899999999998765


Q ss_pred             cC
Q psy13765        257 GA  258 (606)
Q Consensus       257 G~  258 (606)
                      -.
T Consensus       485 ~~  486 (490)
T PRK10938        485 VQ  486 (490)
T ss_pred             ec
Confidence            43

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-35  Score=329.19  Aligned_cols=216  Identities=19%  Similarity=0.309  Sum_probs=167.8

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---  103 (606)
                      ..|+++|+++..          +.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...   
T Consensus       249 ~~i~~~~l~~~~----------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~  317 (491)
T PRK10982        249 VILEVRNLTSLR----------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREK-SAGTITLHGKKINNHNA  317 (491)
T ss_pred             cEEEEeCccccc----------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcC-CccEEEECCEECCCCCH
Confidence            368999998751          3599999999999999999999999999999999999876 59999999976532   


Q ss_pred             -hhhcccEEEEccCCC---CCCCCcHHHH--HHHcCCccccCCccccCC-hHHHHHHHHHHHHhcCCcc--cccCCCCCC
Q psy13765        104 -NAFRRVSCYIQQDDR---LQPLLTIENV--MSLLGLDESQNTRSSQLS-GGQKKRLSIALELINNPRV--MFLDEPTTS  174 (606)
Q Consensus       104 -~~~~~~~~yv~Q~~~---l~~~ltv~~~--l~~~gl~~~~~~~~~~lS-gGqrqRv~ia~~L~~~~~~--~~~de~~~~  174 (606)
                       ...++.++|++|++.   +++.+|+.+.  .+.+  ...... .+.++ ..+++++.-..+.+   .+  -..|.+...
T Consensus       318 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~l~~~---~l~~~~~~~~~~~  391 (491)
T PRK10982        318 NEAINHGFALVTEERRSTGIYAYLDIGFNSLISNI--RNYKNK-VGLLDNSRMKSDTQWVIDSM---RVKTPGHRTQIGS  391 (491)
T ss_pred             HHHHHCCCEEcCCchhhCCcccCCcHHHheehhhh--hhhccc-ccccCcHHHHHHHHHHHHhc---CccCCCccccccc
Confidence             223566999999853   6777776432  1111  000000 01111 22233333222222   22  146899999


Q ss_pred             CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765        175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL  254 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~  254 (606)
                      |||||||||.||+|++.+|+||+|||||+|||+.++..++++|++++++|.|||++|||++ .+.++|||+++|++|+++
T Consensus       392 LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~g~i~  470 (491)
T PRK10982        392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSNGLVA  470 (491)
T ss_pred             CCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEECCEEE
Confidence            9999999999999999999999999999999999999999999999888999999999986 577999999999999999


Q ss_pred             EEcChh
Q psy13765        255 YQGATD  260 (606)
Q Consensus       255 ~~G~~~  260 (606)
                      ..++.+
T Consensus       471 ~~~~~~  476 (491)
T PRK10982        471 GIVDTK  476 (491)
T ss_pred             EEEccc
Confidence            877653

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=3.8e-35  Score=287.45  Aligned_cols=192  Identities=21%  Similarity=0.284  Sum_probs=147.8

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcc
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR  108 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~  108 (606)
                      |+++|++++++        ++.+++ +|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..... ++
T Consensus         2 l~~~~l~~~~~--------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~-~~   70 (195)
T PRK13541          2 LSLHQLQFNIE--------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP-SSGNIYYKNCNINNIA-KP   70 (195)
T ss_pred             eEEEEeeEEEC--------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCcccChhh-hh
Confidence            78999999873        244554 9999999999999999999999999999999876 5999999998754322 35


Q ss_pred             cEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHh
Q psy13765        109 VSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALE  188 (606)
Q Consensus       109 ~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~a  188 (606)
                      .++|++|++.+++..|+.+.+.......           +...++.-+.+.+.-.  -..+++...+|+|||||+.||+|
T Consensus        71 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~-----------~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~~rl~la~a  137 (195)
T PRK13541         71 YCTYIGHNLGLKLEMTVFENLKFWSEIY-----------NSAETLYAAIHYFKLH--DLLDEKCYSLSSGMQKIVAIARL  137 (195)
T ss_pred             hEEeccCCcCCCccCCHHHHHHHHHHhc-----------ccHHHHHHHHHHcCCH--hhhccChhhCCHHHHHHHHHHHH
Confidence            6899999988888889877664321100           0112222111221111  13577788899999999999999


Q ss_pred             hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceee
Q psy13765        189 LINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVY  246 (606)
Q Consensus       189 L~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~  246 (606)
                      ++++|++++|||||+|||+.++..+.+.|++.+++|+|+|+++|++.. + +.+|-+.
T Consensus       138 l~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-i-~~~~~~~  193 (195)
T PRK13541        138 IACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS-I-KSAQILQ  193 (195)
T ss_pred             HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccc-c-chhheec
Confidence            999999999999999999999999999998777779999999999873 3 5566553

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=3.6e-35  Score=361.56  Aligned_cols=216  Identities=23%  Similarity=0.284  Sum_probs=168.4

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Chh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NIN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~  104 (606)
                      .|+++||+++|+.      +.+++|+|+|++|++||.+||+||||||||||+++|.|+.++ .+|+|.+||.+.   +..
T Consensus      1234 ~I~f~nVsf~Y~~------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p-~~G~I~IdG~di~~i~~~ 1306 (1495)
T PLN03232       1234 SIKFEDVHLRYRP------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL-EKGRIMIDDCDVAKFGLT 1306 (1495)
T ss_pred             cEEEEEEEEEECC------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC-CCceEEECCEEhhhCCHH
Confidence            6999999999842      235799999999999999999999999999999999999887 599999999864   457


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHH----HHHHHhcCCcc--cccCCCCCCCCch
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLS----IALELINNPRV--MFLDEPTTSNPND  178 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~----ia~~L~~~~~~--~~~de~~~~~s~g  178 (606)
                      .+|++++|||||+.+++. |+.+.+...+          +.|-.|-.++.    +..-+...|+=  -..+|...++|||
T Consensus      1307 ~lR~~i~iVpQdp~LF~g-TIr~NL~~~~----------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgG 1375 (1495)
T PLN03232       1307 DLRRVLSIIPQSPVLFSG-TVRFNIDPFS----------EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVG 1375 (1495)
T ss_pred             HHHhhcEEECCCCeeeCc-cHHHHcCCCC----------CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHH
Confidence            889999999999999976 7654432110          11222211111    00001111211  1234555667777


Q ss_pred             hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      ||||+.|||||+++|+||+||||||+||+.+...+.+.|++.. +++|+|+++|+++. + ..||+|++|++|++++.|+
T Consensus      1376 QrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~t-i-~~~DrIlVL~~G~ivE~Gt 1452 (1495)
T PLN03232       1376 QRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNT-I-IDCDKILVLSSGQVLEYDS 1452 (1495)
T ss_pred             HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEECC
Confidence            7777778888888899999999999999999999999999874 47999999999864 4 5699999999999999999


Q ss_pred             hhHHHH
Q psy13765        259 TDQLVN  264 (606)
Q Consensus       259 ~~~~~~  264 (606)
                      ++++.+
T Consensus      1453 ~~eLl~ 1458 (1495)
T PLN03232       1453 PQELLS 1458 (1495)
T ss_pred             HHHHHh
Confidence            999864

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=7.6e-36  Score=295.06  Aligned_cols=207  Identities=26%  Similarity=0.438  Sum_probs=163.7

Q ss_pred             EEEEEeeEEEEecCCc-----------c--cccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEE
Q psy13765         28 EIKFKDLTYTVSTGLG-----------F--KQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQI   94 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~-----------~--~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I   94 (606)
                      .+..+||++.|+....           +  ++....+++|+||+|++|++++.+|||||||||+||+|+|+..| .+|.|
T Consensus         3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p-~~G~v   81 (325)
T COG4586           3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLP-TSGKV   81 (325)
T ss_pred             eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcccc-CCCeE
Confidence            4667788877653211           1  12234589999999999999999999999999999999999887 59999


Q ss_pred             EECCccC-C-hhhhcccEEEEc-cCCCCCCC------CcH----------------HHHHHHcCCccccCCccccCChHH
Q psy13765         95 LTNGHSR-N-INAFRRVSCYIQ-QDDRLQPL------LTI----------------ENVMSLLGLDESQNTRSSQLSGGQ  149 (606)
Q Consensus        95 ~~~G~~~-~-~~~~~~~~~yv~-Q~~~l~~~------ltv----------------~~~l~~~gl~~~~~~~~~~lSgGq  149 (606)
                      .+||... + .+++-+.+++|+ |...+.-.      +.|                +.+.+.++++...+.+++.||-||
T Consensus        82 ~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGq  161 (325)
T COG4586          82 RVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQ  161 (325)
T ss_pred             EecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchH
Confidence            9999753 2 244556676665 33333222      222                445566777777777788888888


Q ss_pred             HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Q psy13765        150 KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTII  228 (606)
Q Consensus       150 rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii  228 (606)
                      |.|+.+|.+|+++                              |+||||||||-|||..++..+.+.|++..+ ++.||+
T Consensus       162 RmraeLaaaLLh~------------------------------p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVl  211 (325)
T COG4586         162 RMRAELAAALLHP------------------------------PKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVL  211 (325)
T ss_pred             HHHHHHHHHhcCC------------------------------CcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEE
Confidence            8887766555555                              999999999999999999999999999987 489999


Q ss_pred             EEecCCchHHHhhcceeeeecCCcEEEEcChhHHHHHH
Q psy13765        229 CTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYL  266 (606)
Q Consensus       229 ~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~~f  266 (606)
                      .+||+.+ .+..+||||++|+.|+++|.|+.+++.+-|
T Consensus       212 lTTH~~~-di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f  248 (325)
T COG4586         212 LTTHIFD-DIATLCDRVLLIDQGQLVFDGTLAQLQEQF  248 (325)
T ss_pred             EEecchh-hHHHhhhheEEeeCCcEeecccHHHHHHHh
Confidence            9999987 588999999999999999999999988755

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=5.8e-35  Score=360.26  Aligned_cols=217  Identities=22%  Similarity=0.289  Sum_probs=166.9

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~  103 (606)
                      -.|+++||+++|+.      +.+++|+|+|++|++||.+||+|+||||||||+++|.|+.++ .+|+|.+||.+.   +.
T Consensus      1236 g~I~f~nVsf~Y~~------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p-~~G~I~IDG~dI~~i~l 1308 (1622)
T PLN03130       1236 GSIKFEDVVLRYRP------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL-ERGRILIDGCDISKFGL 1308 (1622)
T ss_pred             CcEEEEEEEEEeCC------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC-CCceEEECCEecccCCH
Confidence            36999999999842      235699999999999999999999999999999999999877 599999999864   45


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHH----HHHHHHHHhcCCccc--ccCCCCCCCCc
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKK----RLSIALELINNPRVM--FLDEPTTSNPN  177 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrq----Rv~ia~~L~~~~~~~--~~de~~~~~s~  177 (606)
                      ..+|+++++||||+.+|.. |+.+.+...+          +.+-.|-.    ++.+-.-+...|+=+  ...|....+||
T Consensus      1309 ~~LR~~IsiVpQdp~LF~G-TIreNLd~~~----------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSg 1377 (1622)
T PLN03130       1309 MDLRKVLGIIPQAPVLFSG-TVRFNLDPFN----------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSV 1377 (1622)
T ss_pred             HHHHhccEEECCCCccccc-cHHHHhCcCC----------CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCH
Confidence            7889999999999999876 6644432211          01111111    111111111111110  22344556777


Q ss_pred             hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      |||||+.|||||+++|+||+||||||+||+.+...+.+.|++.. +++|+|+++|+++. + ..||||++|++|++++.|
T Consensus      1378 GQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t-I-~~~DrIlVLd~G~IvE~G 1454 (1622)
T PLN03130       1378 GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT-I-IDCDRILVLDAGRVVEFD 1454 (1622)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH-H-HhCCEEEEEECCEEEEeC
Confidence            77777777777777799999999999999999999999999875 48999999999874 4 569999999999999999


Q ss_pred             ChhHHHH
Q psy13765        258 ATDQLVN  264 (606)
Q Consensus       258 ~~~~~~~  264 (606)
                      +++++++
T Consensus      1455 t~~eLl~ 1461 (1622)
T PLN03130       1455 TPENLLS 1461 (1622)
T ss_pred             CHHHHHh
Confidence            9999874

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.2e-35  Score=328.03  Aligned_cols=211  Identities=20%  Similarity=0.287  Sum_probs=166.2

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcc
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR  108 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~  108 (606)
                      |+++|++++|        +++++|+|+||+|++||+++|+||||||||||||+|+|+.++ .+|+|.++|.        +
T Consensus         2 l~i~~ls~~~--------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p-~~G~i~~~~~--------~   64 (530)
T PRK15064          2 LSTANITMQF--------GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEP-SAGNVSLDPN--------E   64 (530)
T ss_pred             EEEEEEEEEe--------CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEecCC--------C
Confidence            7899999987        235799999999999999999999999999999999999876 5899999873        3


Q ss_pred             cEEEEccCCCCCCCCcHHHHHHHcCCccc----------cCCc----------------cccCChHH-HHHHHHHHHHhc
Q psy13765        109 VSCYIQQDDRLQPLLTIENVMSLLGLDES----------QNTR----------------SSQLSGGQ-KKRLSIALELIN  161 (606)
Q Consensus       109 ~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~----------~~~~----------------~~~lSgGq-rqRv~ia~~L~~  161 (606)
                      .++|++|++.+++.+|+.+.+... ....          ....                ...+.+.+ ++|+.   +++.
T Consensus        65 ~i~~~~q~~~~~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~  140 (530)
T PRK15064         65 RLGKLRQDQFAFEEFTVLDTVIMG-HTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAG---ELLL  140 (530)
T ss_pred             EEEEEeccCCcCCCCcHHHHHHHh-hHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHH---HHHH
Confidence            589999999999999987665421 1000          0000                00011112 23333   2333


Q ss_pred             CCcc--cccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH
Q psy13765        162 NPRV--MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLF  239 (606)
Q Consensus       162 ~~~~--~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~  239 (606)
                      .-.+  ...+.+...||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++   .|.|||+++|++. .+.
T Consensus       141 ~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~-~~~  216 (530)
T PRK15064        141 GVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRH-FLN  216 (530)
T ss_pred             hCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHH-HHH
Confidence            3233  134678899999999999999999999999999999999999999999999863   5899999999977 577


Q ss_pred             hhcceeeeecCCcE-EEEcChhHHHH
Q psy13765        240 QMFDQVYLLSGGQC-LYQGATDQLVN  264 (606)
Q Consensus       240 ~~~D~v~~L~~G~~-~~~G~~~~~~~  264 (606)
                      ++||++++|++|++ ++.|++++..+
T Consensus       217 ~~~d~i~~l~~g~i~~~~g~~~~~~~  242 (530)
T PRK15064        217 SVCTHMADLDYGELRVYPGNYDEYMT  242 (530)
T ss_pred             hhcceEEEEeCCEEEEecCCHHHHHH
Confidence            89999999999999 58899887653

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=100.00  E-value=4.4e-35  Score=330.25  Aligned_cols=200  Identities=22%  Similarity=0.279  Sum_probs=153.1

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---h
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---I  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~  103 (606)
                      ..|+++||+|+|+.+.   ..++++|+|+|+++++||.++|+||||||||||+|+|+|+.+| .+|+|.+||.+.+   .
T Consensus       336 ~~i~~~~v~f~y~~~~---~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p-~~G~i~~~g~~i~~~~~  411 (555)
T TIGR01194       336 DSIELKDVHMNPKAPE---GSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIP-QEGEILLDGAAVSADSR  411 (555)
T ss_pred             ceEEEEEEEEEeCCCC---CCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCCCCH
Confidence            4699999999985310   0124699999999999999999999999999999999999877 5999999998653   3


Q ss_pred             hhhcccEEEEccCCCCCCCCcHH------------HHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCC
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIE------------NVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEP  171 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~------------~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~  171 (606)
                      ..+++.++||+|++.++.....+            +.++.+++.+..+..+.+                        .+.
T Consensus       412 ~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g------------------------~~t  467 (555)
T TIGR01194       412 DDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGG------------------------FST  467 (555)
T ss_pred             HHHHhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccc------------------------cCC
Confidence            56788999999999887654322            223333333322211111                        011


Q ss_pred             CCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765        172 TTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK-MISQQGRTIICTIHQPSATLFQMFDQVYLLSG  250 (606)
Q Consensus       172 ~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~-~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~  250 (606)
                      ...+|||||||++|||||+++|++++|||||++||+.++..+.+.+. .++.+|+|+|+++|+++  ..+.||++++|++
T Consensus       468 ~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~  545 (555)
T TIGR01194       468 TTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAA  545 (555)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEEC
Confidence            23466666666667777777799999999999999999999988654 56567899999999986  3578999999999


Q ss_pred             CcEEEE
Q psy13765        251 GQCLYQ  256 (606)
Q Consensus       251 G~~~~~  256 (606)
                      |+++..
T Consensus       546 G~i~~~  551 (555)
T TIGR01194       546 GCIVKD  551 (555)
T ss_pred             CEEEEe
Confidence            998754

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.3e-35  Score=327.98  Aligned_cols=203  Identities=19%  Similarity=0.280  Sum_probs=164.9

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF  106 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~  106 (606)
                      ..|+++||+++|.        ++.+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|+       
T Consensus       318 ~~l~~~~l~~~~~--------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p-~~G~i~~~~~-------  381 (530)
T PRK15064        318 NALEVENLTKGFD--------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP-DSGTVKWSEN-------  381 (530)
T ss_pred             ceEEEEeeEEeeC--------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCc-------
Confidence            3699999999872        35699999999999999999999999999999999999876 5899999873       


Q ss_pred             cccEEEEccCCC--CCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc--cccCCCCCCCCchhhhH
Q psy13765        107 RRVSCYIQQDDR--LQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV--MFLDEPTTSNPNDQKKR  182 (606)
Q Consensus       107 ~~~~~yv~Q~~~--l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~--~~~de~~~~~s~g~~kr  182 (606)
                       +.+||++|++.  +++.+|+.+.+....     .      ....++++.   +++..-.+  -..|.+...||||||||
T Consensus       382 -~~i~~~~q~~~~~~~~~~t~~~~~~~~~-----~------~~~~~~~~~---~~l~~~~l~~~~~~~~~~~LSgGq~qr  446 (530)
T PRK15064        382 -ANIGYYAQDHAYDFENDLTLFDWMSQWR-----Q------EGDDEQAVR---GTLGRLLFSQDDIKKSVKVLSGGEKGR  446 (530)
T ss_pred             -eEEEEEcccccccCCCCCcHHHHHHHhc-----c------CCccHHHHH---HHHHHcCCChhHhcCcccccCHHHHHH
Confidence             46999999864  556788877654321     0      011123332   22222222  14688999999999999


Q ss_pred             HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE-EEcChhH
Q psy13765        183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL-YQGATDQ  261 (606)
Q Consensus       183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~-~~G~~~~  261 (606)
                      +.||+||+.+|++|+|||||+|||+.++..+.+.|+++   +.|||++|||+. .+.++||++++|++|+++ +.|++++
T Consensus       447 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~  522 (530)
T PRK15064        447 MLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITPDGVVDFSGTYEE  522 (530)
T ss_pred             HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCCCHHH
Confidence            99999999999999999999999999999999999876   359999999976 577899999999999998 8898876


Q ss_pred             HHH
Q psy13765        262 LVN  264 (606)
Q Consensus       262 ~~~  264 (606)
                      +.+
T Consensus       523 ~~~  525 (530)
T PRK15064        523 YLR  525 (530)
T ss_pred             HHH
Confidence            543

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=100.00  E-value=5.4e-35  Score=327.88  Aligned_cols=201  Identities=25%  Similarity=0.420  Sum_probs=156.0

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Chh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NIN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~  104 (606)
                      .|+++||+|+|+.      +++++|+|+|+++++||.++|+||||||||||+|+|+|+.++ .+|+|.+||.+.   +.+
T Consensus       320 ~i~~~~v~f~y~~------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~I~~~g~~i~~~~~~  392 (529)
T TIGR02857       320 SLEFSGLSVAYPG------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP-TEGSIAVNGVPLADADAD  392 (529)
T ss_pred             eEEEEEEEEECCC------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEehhhCCHH
Confidence            6999999999853      235799999999999999999999999999999999999887 599999999864   456


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHH----HHHHHHHhcCCcc--cccCCCCCCCCch
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKR----LSIALELINNPRV--MFLDEPTTSNPND  178 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqR----v~ia~~L~~~~~~--~~~de~~~~~s~g  178 (606)
                      .+|+.++||+|++.+++. |+.|.+..-. .+        .+..+-..    +.+...+-..|+=  ...+|....+|||
T Consensus       393 ~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~-~~--------~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgG  462 (529)
T TIGR02857       393 SWRDQIAWVPQHPFLFAG-TIAENIRLAR-PD--------ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGG  462 (529)
T ss_pred             HHHhheEEEcCCCcccCc-CHHHHHhccC-CC--------CCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHH
Confidence            788999999999999875 7655443211 11        12111111    1111111112211  1345566778888


Q ss_pred             hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeee
Q psy13765        179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL  248 (606)
Q Consensus       179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L  248 (606)
                      ||||++|||||+++|++++||||||+||+.++..+.+.++++. +++|+|+++|+++.  .+.||++++|
T Consensus       463 q~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~i~~l  529 (529)
T TIGR02857       463 QAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLAL--AERADRIVVL  529 (529)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH--HHhCCEEEeC
Confidence            8888899999999999999999999999999999999999885 58999999999853  4789999875

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=3.1e-35  Score=294.05  Aligned_cols=194  Identities=25%  Similarity=0.395  Sum_probs=164.9

Q ss_pred             eEEEEEeeEEEEecCCccccc-ccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhh
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQE-PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA  105 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~  105 (606)
                      ..++++||++.++.+..+.+. ...+++||||+|++||+++|+|+||||||||-|+|.|+..| ++|+|.++|++...- 
T Consensus         3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~p-t~G~i~f~g~~i~~~-   80 (268)
T COG4608           3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEP-TSGEILFEGKDITKL-   80 (268)
T ss_pred             ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCC-CCceEEEcCcchhhc-
Confidence            368999999999765322222 25799999999999999999999999999999999999887 599999999874321 


Q ss_pred             hcccEEEEccCCCCCCCCcHHHHHHHcCCcc-ccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDE-SQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS  184 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~-~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~  184 (606)
                       .        .+  -..-.+.++++.+|+.. ..++.++++|||||||+.|||||+.+                      
T Consensus        81 -~--------~~--~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~----------------------  127 (268)
T COG4608          81 -S--------KE--ERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALN----------------------  127 (268)
T ss_pred             -c--------hh--HHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhC----------------------
Confidence             1        00  00013678899999876 78889999999999999977777766                      


Q ss_pred             HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765        185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                              |+++++|||||.||...+.+++++|+++.++ |.|.++++||.+ .+..++||+.+|..|++++.|+.+++.
T Consensus       128 --------P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy~G~iVE~g~~~~~~  198 (268)
T COG4608         128 --------PKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMYLGKIVEIGPTEEVF  198 (268)
T ss_pred             --------CcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEecCceeEecCHHHHh
Confidence                    9999999999999999999999999999875 999999999977 588999999999999999999999886


Q ss_pred             H
Q psy13765        264 N  264 (606)
Q Consensus       264 ~  264 (606)
                      .
T Consensus       199 ~  199 (268)
T COG4608         199 S  199 (268)
T ss_pred             h
Confidence            4

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3e-34  Score=278.36  Aligned_cols=234  Identities=24%  Similarity=0.304  Sum_probs=182.2

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CccEEEECCccCC---
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG-VTGQILTNGHSRN---  102 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~-~~G~I~~~G~~~~---  102 (606)
                      ..++++||++++.       ++|.||++||++|++||+.+||||||||||||.++|+|..... ++|+|.++|+++.   
T Consensus         2 ~~L~I~dLhv~v~-------~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~   74 (251)
T COG0396           2 MMLEIKDLHVEVE-------GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELS   74 (251)
T ss_pred             ceeEEeeeEEEec-------CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCC
Confidence            4689999999973       2258999999999999999999999999999999999974322 5899999998642   


Q ss_pred             h-hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhh
Q psy13765        103 I-NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKK  181 (606)
Q Consensus       103 ~-~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~k  181 (606)
                      + .+.|+.+..-+|.|.=+|..++.+.+.... +.....+.  +-.-=.+++.-+.+.+.-++-.+--.--.+.||||||
T Consensus        75 ~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~-n~~~~~~~--~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkK  151 (251)
T COG0396          75 PDERARAGIFLAFQYPVEIPGVTNSDFLRAAM-NARRGARG--ILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKK  151 (251)
T ss_pred             HhHHHhcCCEEeecCCccCCCeeHHHHHHHHH-Hhhhcccc--ccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHH
Confidence            3 344667888999999999999888776421 11111111  1111123333333333332222222233457999999


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc--ceeeeecCCcEEEEcCh
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMF--DQVYLLSGGQCLYQGAT  259 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~--D~v~~L~~G~~~~~G~~  259 (606)
                      |.+|+..++.+|++.+||||-||||..+-+.+.+.+++++++|.+++++||...  +..+.  |++.+|.+|+++..|.+
T Consensus       152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~r--ll~~i~pD~vhvl~~GrIv~sG~~  229 (251)
T COG0396         152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQR--LLDYIKPDKVHVLYDGRIVKSGDP  229 (251)
T ss_pred             HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHH--HHhhcCCCEEEEEECCEEEecCCH
Confidence            999999999999999999999999999999999999999999999999999954  56666  99999999999999999


Q ss_pred             hHHHHHHHhCCCCC
Q psy13765        260 DQLVNYLSSVNLPC  273 (606)
Q Consensus       260 ~~~~~~f~~~g~~~  273 (606)
                       ++..+++.-||.|
T Consensus       230 -el~~~le~~gy~~  242 (251)
T COG0396         230 -ELAEELEEKGYDW  242 (251)
T ss_pred             -HHHHHHHHhchHH
Confidence             8999999999865

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=100.00  E-value=5.4e-35  Score=310.00  Aligned_cols=216  Identities=23%  Similarity=0.348  Sum_probs=173.5

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC----
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN----  102 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~----  102 (606)
                      ..++++|+++.|+        ...+++|||+++++||+.||+|.||||||||+|+|.|.+.| .+|+|.++|++..    
T Consensus         3 ~~l~~~~itK~f~--------~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P-~~GeI~v~G~~v~~~sP   73 (501)
T COG3845           3 PALEMRGITKRFP--------GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQP-DSGEIRVDGKEVRIKSP   73 (501)
T ss_pred             ceEEEeccEEEcC--------CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccC-CcceEEECCEEeccCCH
Confidence            3589999999973        56799999999999999999999999999999999999987 5999999998753    


Q ss_pred             hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc-cccCCCCCCCCchhhh
Q psy13765        103 INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-MFLDEPTTSNPNDQKK  181 (606)
Q Consensus       103 ~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~k  181 (606)
                      .+..+..||.|+|+..+.|.+||.|.+- +|.+......+ +.+.- ++|+.   ++..+=.+ +=.|+.++.||-||||
T Consensus        74 ~dA~~~GIGMVhQHF~Lv~~lTV~ENii-Lg~e~~~~~~~-~~~~~-~~~i~---~l~~~yGl~vdp~~~V~dLsVG~qQ  147 (501)
T COG3845          74 RDAIRLGIGMVHQHFMLVPTLTVAENII-LGLEPSKGGLI-DRRQA-RARIK---ELSERYGLPVDPDAKVADLSVGEQQ  147 (501)
T ss_pred             HHHHHcCCcEEeeccccccccchhhhhh-hcCcccccccc-CHHHH-HHHHH---HHHHHhCCCCCccceeecCCcchhH
Confidence            2456778999999999999999955432 34433211111 11121 23332   22221111 1247778888999999


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      ||+|-+||.++|++|||||||+-|-|...+++++.+++++++|+|||++||... ++.++|||+.+|++|+++..-+
T Consensus       148 RVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~Gkvvgt~~  223 (501)
T COG3845         148 RVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRRGKVVGTVD  223 (501)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeCCeEEeeec
Confidence            999999999999999999999999999999999999999999999999999987 6889999999999999876554

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=1.1e-34  Score=327.06  Aligned_cols=213  Identities=22%  Similarity=0.368  Sum_probs=167.6

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF  106 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~  106 (606)
                      ..|+++||+++|.       +++.+|+|+||+|++||+++|+|||||||||||++|+|..++ .+|+|.+++.       
T Consensus         5 ~~l~i~~l~~~y~-------~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p-~~G~i~~~~~-------   69 (556)
T PRK11819          5 YIYTMNRVSKVVP-------PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE-FEGEARPAPG-------   69 (556)
T ss_pred             EEEEEeeEEEEeC-------CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEecCC-------
Confidence            4699999999973       136799999999999999999999999999999999999876 5899999752       


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHcCCccc------c-------CCcccc-----------------CCh-HHHHHHHH
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDES------Q-------NTRSSQ-----------------LSG-GQKKRLSI  155 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~------~-------~~~~~~-----------------lSg-GqrqRv~i  155 (606)
                       ..+|||+|++.+++.+|+.+.+.. ++...      .       ......                 +.+ ...+|+.-
T Consensus        70 -~~i~~v~Q~~~~~~~~tv~e~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (556)
T PRK11819         70 -IKVGYLPQEPQLDPEKTVRENVEE-GVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEI  147 (556)
T ss_pred             -CEEEEEecCCCCCCCCcHHHHHHH-hhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHH
Confidence             459999999999999999776543 11000      0       000000                 000 11334443


Q ss_pred             HHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765        156 ALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS  235 (606)
Q Consensus       156 a~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~  235 (606)
                      +...+.-+   ..|.+...|||||||||.||+||+.+|++|||||||+|||+.+...+.+.|+++.   .|||++||++.
T Consensus       148 ~l~~~gl~---~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~  221 (556)
T PRK11819        148 AMDALRCP---PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRY  221 (556)
T ss_pred             HHHhCCCC---cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHH
Confidence            33333221   2588999999999999999999999999999999999999999999999998873   59999999976


Q ss_pred             hHHHhhcceeeeecCCcEE-EEcChhHHH
Q psy13765        236 ATLFQMFDQVYLLSGGQCL-YQGATDQLV  263 (606)
Q Consensus       236 ~~i~~~~D~v~~L~~G~~~-~~G~~~~~~  263 (606)
                       .+...||++++|++|+++ +.|+.++..
T Consensus       222 -~~~~~~d~i~~l~~g~i~~~~g~~~~~~  249 (556)
T PRK11819        222 -FLDNVAGWILELDRGRGIPWEGNYSSWL  249 (556)
T ss_pred             -HHHhhcCeEEEEeCCEEEEecCCHHHHH
Confidence             577899999999999986 889877643

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=100.00  E-value=1.5e-34  Score=293.43  Aligned_cols=187  Identities=18%  Similarity=0.278  Sum_probs=146.4

Q ss_pred             cceeeeEEEe-----CCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcH
Q psy13765         51 VLKNLCGRFP-----SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTI  125 (606)
Q Consensus        51 iL~~vs~~i~-----~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv  125 (606)
                      .++|++++++     +||+++|+||||||||||+++|+|+.++ .+|+|.++|.         .++|++|+....+..|+
T Consensus         9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p-~~G~i~~~g~---------~i~~~~q~~~~~~~~tv   78 (246)
T cd03237           9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKP-DEGDIEIELD---------TVSYKPQYIKADYEGTV   78 (246)
T ss_pred             ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcC-CCCeEEECCc---------eEEEecccccCCCCCCH
Confidence            6677777775     7999999999999999999999999876 5999999984         58999999887778899


Q ss_pred             HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc-cccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCC
Q psy13765        126 ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTG  204 (606)
Q Consensus       126 ~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsg  204 (606)
                      .+.+.... ...     ..    ..++.   .+++..-.+ -.+|.+...|||||||||+||+||+.+|++++|||||++
T Consensus        79 ~e~l~~~~-~~~-----~~----~~~~~---~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~  145 (246)
T cd03237          79 RDLLSSIT-KDF-----YT----HPYFK---TEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAY  145 (246)
T ss_pred             HHHHHHHh-hhc-----cc----cHHHH---HHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            88765321 100     00    01111   122222222 146788889999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEE--EEcChhH
Q psy13765        205 LDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCL--YQGATDQ  261 (606)
Q Consensus       205 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~--~~G~~~~  261 (606)
                      ||+.++..+.+.|++++++ |+|||+++|++. .+..+||++++|+++..+  ..+++.+
T Consensus       146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~  204 (246)
T cd03237         146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQS  204 (246)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence            9999999999999999764 899999999976 577899999999764433  3455544

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=100.00  E-value=1.3e-34  Score=270.35  Aligned_cols=144  Identities=33%  Similarity=0.447  Sum_probs=127.9

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcc
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR  108 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~  108 (606)
                      ++++|+++.+.        ++++++++|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|+        +
T Consensus         1 l~~~~l~~~~~--------~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~~~--------~   63 (144)
T cd03221           1 IELENLSKTYG--------GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWGST--------V   63 (144)
T ss_pred             CEEEEEEEEEC--------CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCe--------E
Confidence            46889999863        24699999999999999999999999999999999999876 5999999984        4


Q ss_pred             cEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHh
Q psy13765        109 VSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALE  188 (606)
Q Consensus       109 ~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~a  188 (606)
                      .++|++|                             ||+||+||+++|++|+.+                          
T Consensus        64 ~i~~~~~-----------------------------lS~G~~~rv~laral~~~--------------------------   88 (144)
T cd03221          64 KIGYFEQ-----------------------------LSGGEKMRLALAKLLLEN--------------------------   88 (144)
T ss_pred             EEEEEcc-----------------------------CCHHHHHHHHHHHHHhcC--------------------------
Confidence            6899998                             888888888876666666                          


Q ss_pred             hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765        189 LINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ  252 (606)
Q Consensus       189 L~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~  252 (606)
                          |+++++||||+|||+.++..+.+.++++   ++|+++++|+++ .+.++||++++|++|+
T Consensus        89 ----p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~g~  144 (144)
T cd03221          89 ----PNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELEDGK  144 (144)
T ss_pred             ----CCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence                9999999999999999999999999887   479999999976 5678899999999885

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=1.6e-34  Score=356.36  Aligned_cols=217  Identities=19%  Similarity=0.251  Sum_probs=168.6

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~  103 (606)
                      -.|+++||+++|+.      +.+.+|+|||++|++||.+||+|+||||||||+++|.|+..+ .+|+|.+||.++   +.
T Consensus      1283 g~I~f~nVsf~Y~~------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~-~~G~I~IdG~dI~~i~~ 1355 (1522)
T TIGR00957      1283 GRVEFRNYCLRYRE------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES-AEGEIIIDGLNIAKIGL 1355 (1522)
T ss_pred             CcEEEEEEEEEeCC------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC-CCCeEEECCEEccccCH
Confidence            36999999999853      224699999999999999999999999999999999999877 589999999875   45


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHH---HHHh-cCCccc--ccCCCCCCCCc
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIA---LELI-NNPRVM--FLDEPTTSNPN  177 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia---~~L~-~~~~~~--~~de~~~~~s~  177 (606)
                      ..+|+++++||||+.+|+. |+.+.++-.+          +.|-.|-.++.-.   .+.+ ..|+=+  ..+|....+||
T Consensus      1356 ~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~----------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSg 1424 (1522)
T TIGR00957      1356 HDLRFKITIIPQDPVLFSG-SLRMNLDPFS----------QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSV 1424 (1522)
T ss_pred             HHHHhcCeEECCCCcccCc-cHHHHcCccc----------CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCH
Confidence            7889999999999999986 6655443211          1222221111100   0111 111111  23444556777


Q ss_pred             hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      |||||+.|||||+++|+||+||||||+||+.+...+.+.|++.. +++|+|+++|+++. + ..+|||++|++|++++.|
T Consensus      1425 GQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~t-i-~~~DrIlVld~G~IvE~G 1501 (1522)
T TIGR00957      1425 GQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNT-I-MDYTRVIVLDKGEVAEFG 1501 (1522)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEEC
Confidence            77777778888888899999999999999999999999998764 47999999999874 4 679999999999999999


Q ss_pred             ChhHHHH
Q psy13765        258 ATDQLVN  264 (606)
Q Consensus       258 ~~~~~~~  264 (606)
                      +++++++
T Consensus      1502 ~~~eLl~ 1508 (1522)
T TIGR00957      1502 APSNLLQ 1508 (1522)
T ss_pred             CHHHHHh
Confidence            9999875

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=100.00  E-value=9.4e-35  Score=325.95  Aligned_cols=189  Identities=25%  Similarity=0.412  Sum_probs=140.4

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--hh
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--IN  104 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--~~  104 (606)
                      ..|+++||+|+|+.       ++++|+|+|+++++||.+||+||||||||||+|+|+|+.+| .+|+|.+||.+.+  .+
T Consensus       333 ~~I~~~~vsf~Y~~-------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-~~G~I~i~g~~i~~~~~  404 (529)
T TIGR02868       333 PTLELRDLSFGYPG-------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDP-LQGEVTLDGVSVSSLQD  404 (529)
T ss_pred             ceEEEEEEEEecCC-------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEEhhhHHH
Confidence            46999999999842       24599999999999999999999999999999999999887 5999999997543  56


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHH---HHHhc-CCcc--cccCCCCCCCCch
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIA---LELIN-NPRV--MFLDEPTTSNPND  178 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia---~~L~~-~~~~--~~~de~~~~~s~g  178 (606)
                      .+|+.++||+|++.+++. |+.|.+.. |-.+        .|-.+-+++.-.   .+.+. -|+=  -...|....+|||
T Consensus       405 ~lr~~i~~V~Q~~~lF~~-TI~eNI~~-g~~~--------~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG  474 (529)
T TIGR02868       405 ELRRRISVFAQDAHLFDT-TVRDNLRL-GRPD--------ATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGG  474 (529)
T ss_pred             HHHhheEEEccCcccccc-cHHHHHhc-cCCC--------CCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHH
Confidence            788999999999999876 55443322 1111        111111111100   01111 1110  1223445567777


Q ss_pred             hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy13765        179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQP  234 (606)
Q Consensus       179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~  234 (606)
                      ||||++|||||+++|+||+||||||+||+.++..+.+.++++. +++|+|+++|++
T Consensus       475 QrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl  529 (529)
T TIGR02868       475 ERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL  529 (529)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence            7777778888888899999999999999999999999999764 479999999984

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=100.00  E-value=8.8e-35  Score=306.67  Aligned_cols=187  Identities=27%  Similarity=0.447  Sum_probs=150.9

Q ss_pred             EECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccC
Q psy13765         67 IMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQL  145 (606)
Q Consensus        67 IiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~l  145 (606)
                      |+|||||||||||++|+|+.++ .+|+|.++|++... ...++.++|++|++.+++.+|+.+.+... +..      ...
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p-~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~-~~~------~~~   72 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQP-DSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFG-LKM------RKV   72 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCC-CceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHH-Hhh------cCC
Confidence            6899999999999999999876 59999999987532 23457899999999999999997766531 110      012


Q ss_pred             ChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q psy13765        146 SGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-  223 (606)
Q Consensus       146 SgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-  223 (606)
                      +..+ ++++.-+.+.+.-.  -.+|.+...|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ 
T Consensus        73 ~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~  150 (325)
T TIGR01187        73 PRAEIKPRVLEALRLVQLE--EFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL  150 (325)
T ss_pred             CHHHHHHHHHHHHHHcCCc--chhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence            2222 33443333333221  1568888999999999999999999999999999999999999999999999999875 


Q ss_pred             CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        224 GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       224 g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      |+|+|++||++. ++.++||++++|++|+++..|+++++.+
T Consensus       151 g~tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~~  190 (325)
T TIGR01187       151 GITFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIYE  190 (325)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            899999999986 5778999999999999999999988753

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=100.00  E-value=1.6e-34  Score=287.04  Aligned_cols=194  Identities=18%  Similarity=0.204  Sum_probs=151.5

Q ss_pred             ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEE-ECCccCChhhhcccEEEEccCCCCCCCCcHHHH
Q psy13765         50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQIL-TNGHSRNINAFRRVSCYIQQDDRLQPLLTIENV  128 (606)
Q Consensus        50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~-~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~  128 (606)
                      .+|+|||++|++||+++|+||||||||||+|+|+|+.++ .+|+|. ++|....          +.|++.+++.+|+.+.
T Consensus         1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~sG~i~~~~~~~~~----------~~~~~~l~~~ltv~en   69 (213)
T PRK15177          1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAP-DEGDFIGLRGDALP----------LGANSFILPGLTGEEN   69 (213)
T ss_pred             CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC-CCCCEEEecCceec----------cccccccCCcCcHHHH
Confidence            379999999999999999999999999999999999876 599997 7774321          2356678889999877


Q ss_pred             HHHc-CCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCH
Q psy13765        129 MSLL-GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDS  207 (606)
Q Consensus       129 l~~~-gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~  207 (606)
                      +... +...        .+.-+.+.  ....+..-+  -..|.+...+|+|||||++||+||+.+|++++|||||+++|+
T Consensus        70 l~~~~~~~~--------~~~~~~~~--~~~~~~~l~--~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~  137 (213)
T PRK15177         70 ARMMASLYG--------LDGDEFSH--FCYQLTQLE--QCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN  137 (213)
T ss_pred             HHHHHHHcC--------CCHHHHHH--HHHHHhChh--HHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence            7642 1111        11111111  111111111  135778889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHHHHHh
Q psy13765        208 QSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSS  268 (606)
Q Consensus       208 ~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~~f~~  268 (606)
                      .++..+.+.+.+..+ ++|+|+++|++. .+.++||++++|++|++++.|+.++..++++.
T Consensus       138 ~~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~  196 (213)
T PRK15177        138 ATQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQ  196 (213)
T ss_pred             HHHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence            999999998865443 468999999987 46789999999999999999999998877654

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=2.8e-34  Score=323.47  Aligned_cols=214  Identities=21%  Similarity=0.361  Sum_probs=166.9

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF  106 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~  106 (606)
                      ..++++||+++|+       +++.+|+|+|++|++||+++|+|||||||||||++|+|+.++ .+|+|.+++        
T Consensus         3 ~~i~~~nls~~~~-------~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p-~~G~i~~~~--------   66 (552)
T TIGR03719         3 YIYTMNRVSKVVP-------PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE-FNGEARPAP--------   66 (552)
T ss_pred             EEEEEeeEEEecC-------CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEecC--------
Confidence            3689999999973       135799999999999999999999999999999999999876 589999975        


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHcCCccc-------------cCCcccc----------------CCh--HHHHHHHH
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDES-------------QNTRSSQ----------------LSG--GQKKRLSI  155 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~-------------~~~~~~~----------------lSg--GqrqRv~i  155 (606)
                      +..+|||+|++.+++.+|+.+.+.. ++...             ....-..                ..|  +..+|+.-
T Consensus        67 ~~~i~~v~Q~~~~~~~~tv~e~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (552)
T TIGR03719        67 GIKVGYLPQEPQLDPTKTVRENVEE-GVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEI  145 (552)
T ss_pred             CCEEEEEeccCCCCCCCcHHHHHHH-hhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHH
Confidence            2469999999999999999776543 11100             0000000                000  11233332


Q ss_pred             HHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765        156 ALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS  235 (606)
Q Consensus       156 a~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~  235 (606)
                      +...+.   +-..|.++..+||||||||.||+||+.+|++|+|||||+|||+.++..+.+.|+++   +.|||++||++.
T Consensus       146 ~l~~~~---l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~  219 (552)
T TIGR03719       146 AMDALR---CPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRY  219 (552)
T ss_pred             HHhhCC---CCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHH
Confidence            222222   21258899999999999999999999999999999999999999999999999876   359999999976


Q ss_pred             hHHHhhcceeeeecCCcEE-EEcChhHHHH
Q psy13765        236 ATLFQMFDQVYLLSGGQCL-YQGATDQLVN  264 (606)
Q Consensus       236 ~~i~~~~D~v~~L~~G~~~-~~G~~~~~~~  264 (606)
                       .+..+||++++|++|+++ +.|+.++..+
T Consensus       220 -~~~~~~d~v~~l~~g~i~~~~g~~~~~~~  248 (552)
T TIGR03719       220 -FLDNVAGWILELDRGRGIPWEGNYSSWLE  248 (552)
T ss_pred             -HHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence             577899999999999976 7898876544

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=2.6e-34  Score=353.92  Aligned_cols=216  Identities=19%  Similarity=0.237  Sum_probs=168.3

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Chh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NIN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~  104 (606)
                      .|+|+||+++|+.      +.+.+|+||||+|++||.+||+|+||||||||+++|.|+..+ .+|+|.+||.++   +.+
T Consensus      1308 ~I~f~nVsf~Y~~------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p-~~G~I~IDG~di~~i~l~ 1380 (1560)
T PTZ00243       1308 SLVFEGVQMRYRE------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV-CGGEIRVNGREIGAYGLR 1380 (1560)
T ss_pred             eEEEEEEEEEeCC------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEEcccCCHH
Confidence            6999999999853      234699999999999999999999999999999999999887 589999999875   457


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHH---HHHh-cCCcc--cccCCCCCCCCch
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIA---LELI-NNPRV--MFLDEPTTSNPND  178 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia---~~L~-~~~~~--~~~de~~~~~s~g  178 (606)
                      ++|+.++|||||+.+|+. |+.+.++..+          +.|-.|-.++.-.   .+.+ ..|+=  -...|...++|||
T Consensus      1381 ~LR~~I~iVpQdp~LF~g-TIreNIdp~~----------~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgG 1449 (1560)
T PTZ00243       1381 ELRRQFSMIPQDPVLFDG-TVRQNVDPFL----------EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVG 1449 (1560)
T ss_pred             HHHhcceEECCCCccccc-cHHHHhCccc----------CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHH
Confidence            889999999999999976 7654442110          1122221111100   0011 11111  1234555678888


Q ss_pred             hhhHHHHHHhhhcC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        179 QKKRLSIALELINN-PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       179 ~~krl~IA~aL~~~-P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      ||||+.|||||+++ |+||+||||||+||+.+...+.+.|++.. +++|+|+++|+++.  ...||+|++|++|++++.|
T Consensus      1450 QrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~t--i~~~DrIlVLd~G~VvE~G 1526 (1560)
T PTZ00243       1450 QRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHT--VAQYDKIIVMDHGAVAEMG 1526 (1560)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHH--HHhCCEEEEEECCEEEEEC
Confidence            88888888888885 89999999999999999999999998864 47999999999863  4789999999999999999


Q ss_pred             ChhHHHH
Q psy13765        258 ATDQLVN  264 (606)
Q Consensus       258 ~~~~~~~  264 (606)
                      +++++++
T Consensus      1527 t~~eLl~ 1533 (1560)
T PTZ00243       1527 SPRELVM 1533 (1560)
T ss_pred             CHHHHHh
Confidence            9999864

>KOG0056|consensus

Probab=100.00  E-value=4.6e-35  Score=306.67  Aligned_cols=210  Identities=25%  Similarity=0.398  Sum_probs=162.1

Q ss_pred             CceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--
Q psy13765         25 DRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--  102 (606)
Q Consensus        25 ~~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--  102 (606)
                      .+-.|+|+||+|.|+       .+|++|+||||++.||+.+|++||||+||||++++|-++... .+|.|.+||+++.  
T Consensus       534 ~~G~i~fsnvtF~Y~-------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv-~sGsI~iDgqdIrnv  605 (790)
T KOG0056|consen  534 TQGKIEFSNVTFAYD-------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDV-NSGSITIDGQDIRNV  605 (790)
T ss_pred             cCCeEEEEEeEEecC-------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhc-cCceEEEcCchHHHH
Confidence            445899999999985       458899999999999999999999999999999999998765 4999999998754  


Q ss_pred             -hhhhcccEEEEccCCCCCCCCc------------HHHHHHH---cCCccccCCccccCChHHHHHHHHHHHHhcCCccc
Q psy13765        103 -INAFRRVSCYIQQDDRLQPLLT------------IENVMSL---LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM  166 (606)
Q Consensus       103 -~~~~~~~~~yv~Q~~~l~~~lt------------v~~~l~~---~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~  166 (606)
                       ...+|+.||.||||..+|.+..            -||+.+.   .++.+    ++-++.-|-+-||.            
T Consensus       606 t~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHd----rIl~fPegY~t~VG------------  669 (790)
T KOG0056|consen  606 TQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHD----RILQFPEGYNTRVG------------  669 (790)
T ss_pred             HHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHH----HHhcCchhhhhhhh------------
Confidence             4678999999999998876532            1333322   22211    12222222222221            


Q ss_pred             ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceee
Q psy13765        167 FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVY  246 (606)
Q Consensus       167 ~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~  246 (606)
                         |....|||||||||+|||+++++|.+++|||.||+||..+.+.+...|.++++ ++|.|++.|..+. + -.+|.|+
T Consensus       670 ---ERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST-i-vnAD~IL  743 (790)
T KOG0056|consen  670 ---ERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST-I-VNADLIL  743 (790)
T ss_pred             ---hcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh-e-ecccEEE
Confidence               23333444444444455555555999999999999999999999999999986 7888999999885 4 4699999


Q ss_pred             eecCCcEEEEcChhHHHH
Q psy13765        247 LLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       247 ~L~~G~~~~~G~~~~~~~  264 (606)
                      ++++|++++.|.++|+..
T Consensus       744 vi~~G~IvErG~HeeLl~  761 (790)
T KOG0056|consen  744 VISNGRIVERGRHEELLK  761 (790)
T ss_pred             EEeCCeEeecCcHHHHHh
Confidence            999999999999999875

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=100.00  E-value=2.4e-34  Score=277.17  Aligned_cols=153  Identities=25%  Similarity=0.384  Sum_probs=131.1

Q ss_pred             EeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEE
Q psy13765         32 KDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSC  111 (606)
Q Consensus        32 ~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~  111 (606)
                      .||++++        +++.+++++ +++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|.         .++
T Consensus         4 ~~l~~~~--------~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~---------~i~   64 (177)
T cd03222           4 PDCVKRY--------GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGI---------TPV   64 (177)
T ss_pred             CCeEEEE--------CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEECCE---------EEE
Confidence            5777776        346788885 89999999999999999999999999999876 5999999984         278


Q ss_pred             EEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhc
Q psy13765        112 YIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELIN  191 (606)
Q Consensus       112 yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~  191 (606)
                      |++|+..                          ||||||||+++|++|+.+                             
T Consensus        65 ~~~q~~~--------------------------LSgGq~qrv~laral~~~-----------------------------   89 (177)
T cd03222          65 YKPQYID--------------------------LSGGELQRVAIAAALLRN-----------------------------   89 (177)
T ss_pred             EEcccCC--------------------------CCHHHHHHHHHHHHHhcC-----------------------------
Confidence            9998653                          899999988877666666                             


Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCchHHHhhcceeeeecCCcEEEE--cChh
Q psy13765        192 NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQG-RTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ--GATD  260 (606)
Q Consensus       192 ~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g-~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~--G~~~  260 (606)
                       |++++|||||+|||+.++..+.+.++++++++ .|||+++|++. .+.++||++++|+++-.++.  |+|.
T Consensus        90 -p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~~~~~~~  159 (177)
T cd03222          90 -ATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYGIASQPK  159 (177)
T ss_pred             -CCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCccceeccCCc
Confidence             99999999999999999999999999998775 99999999976 56678999999998766655  5554

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=3.2e-34  Score=276.05  Aligned_cols=164  Identities=29%  Similarity=0.374  Sum_probs=137.1

Q ss_pred             cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHH
Q psy13765         47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIE  126 (606)
Q Consensus        47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~  126 (606)
                      ..+++|+|+|+++++||+++|+||||||||||||+|.+     .+|++.++|....  ..++.++|++|          .
T Consensus         6 ~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-----~~G~v~~~~~~~~--~~~~~~~~~~q----------~   68 (176)
T cd03238           6 ANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-----ASGKARLISFLPK--FSRNKLIFIDQ----------L   68 (176)
T ss_pred             eeeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-----cCCcEEECCcccc--cccccEEEEhH----------H
Confidence            34679999999999999999999999999999999953     3799999986321  12345889988          5


Q ss_pred             HHHHHcCCcc-ccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCC
Q psy13765        127 NVMSLLGLDE-SQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL  205 (606)
Q Consensus       127 ~~l~~~gl~~-~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgL  205 (606)
                      +.++.+++.. ..++++.+||||||||+++|++|+.+||                            |++++|||||+||
T Consensus        69 ~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~----------------------------p~llLlDEPt~~L  120 (176)
T cd03238          69 QFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPP----------------------------GTLFILDEPSTGL  120 (176)
T ss_pred             HHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCC----------------------------CCEEEEeCCcccC
Confidence            7888999976 4788889999999999986666665543                            9999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        206 DSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       206 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      |+.++..+.+.|++++++|+|||+++|++.. + +.||++++|.+|+....|
T Consensus       121 D~~~~~~l~~~l~~~~~~g~tvIivSH~~~~-~-~~~d~i~~l~~g~~~~~~  170 (176)
T cd03238         121 HQQDINQLLEVIKGLIDLGNTVILIEHNLDV-L-SSADWIIDFGPGSGKSGG  170 (176)
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEECCCCCCCCc
Confidence            9999999999999998789999999999864 4 689999999776554433

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=3e-34  Score=350.97  Aligned_cols=211  Identities=25%  Similarity=0.395  Sum_probs=163.4

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEEC-CccC---Ch
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTN-GHSR---NI  103 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~-G~~~---~~  103 (606)
                      .|+++||+++|+.+     .++++|+|+|++|++||++||+||||||||||+++|+|+++| .+|+|.+| |.+.   +.
T Consensus       382 ~I~~~nVsf~Y~~~-----~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p-~~G~I~i~~g~~i~~~~~  455 (1466)
T PTZ00265        382 KIQFKNVRFHYDTR-----KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDP-TEGDIIINDSHNLKDINL  455 (1466)
T ss_pred             cEEEEEEEEEcCCC-----CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccC-CCCeEEEeCCcchhhCCH
Confidence            79999999998531     235699999999999999999999999999999999999887 59999995 5543   34


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCcccc---------C--------------C----------------cc--
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQ---------N--------------T----------------RS--  142 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~---------~--------------~----------------~~--  142 (606)
                      ..+|+.+|||+|++.+++. |+.+.+.. |.....         +              .                .+  
T Consensus       456 ~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (1466)
T PTZ00265        456 KWWRSKIGVVSQDPLLFSN-SIKNNIKY-SLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNE  533 (1466)
T ss_pred             HHHHHhccEecccccchhc-cHHHHHHh-cCCCccccchhccccccccccccccccccccccccccchhhhcccccchhh
Confidence            5678899999999999985 88766643 221000         0              0                00  


Q ss_pred             --------ccCChHHHHHHHHHHHHh-------cCCccc--ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCC
Q psy13765        143 --------SQLSGGQKKRLSIALELI-------NNPRVM--FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL  205 (606)
Q Consensus       143 --------~~lSgGqrqRv~ia~~L~-------~~~~~~--~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgL  205 (606)
                              ...+-   .++.-|...+       .-|+-+  ..++....||||||||++|||||+++|+||+||||||+|
T Consensus       534 ~l~~~~~~~~~~~---~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaL  610 (1466)
T PTZ00265        534 LIEMRKNYQTIKD---SEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSL  610 (1466)
T ss_pred             hhhcccccccCCH---HHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccc
Confidence                    00111   1222222221       122211  346778889999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCC
Q psy13765        206 DSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGG  251 (606)
Q Consensus       206 D~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G  251 (606)
                      |+.++..+.+.|+++++ +|+|+|+++|+++. + +.||+|++|++|
T Consensus       611 D~~se~~i~~~L~~~~~~~g~TvIiIsHrls~-i-~~aD~Iivl~~g  655 (1466)
T PTZ00265        611 DNKSEYLVQKTINNLKGNENRITIIIAHRLST-I-RYANTIFVLSNR  655 (1466)
T ss_pred             CHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH-H-HhCCEEEEEeCC
Confidence            99999999999999976 58999999999864 4 789999999886

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=6.9e-35  Score=269.33  Aligned_cols=194  Identities=25%  Similarity=0.390  Sum_probs=160.4

Q ss_pred             ccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---ChhhhcccEEEEccCCCCCCC
Q psy13765         46 QEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NINAFRRVSCYIQQDDRLQPL  122 (606)
Q Consensus        46 ~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~~~~~~~~yv~Q~~~l~~~  122 (606)
                      .+...+|+++|+++++||..+|.||||||||||+|+++.+.++ .+|++++.|++.   ++..+|+.++|+.|.+.+++.
T Consensus        13 a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp-~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~   91 (223)
T COG4619          13 AGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISP-TSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD   91 (223)
T ss_pred             cCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCC-CCceEEEcCccccccChHHHHHHHHHHHcCcccccc
Confidence            3567899999999999999999999999999999999999887 599999999875   457899999999999999987


Q ss_pred             CcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc--cccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeC
Q psy13765        123 LTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV--MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDE  200 (606)
Q Consensus       123 ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~--~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDE  200 (606)
                       ||++.+..--  ...+++.      +|   ..|.+|+.+.++  .+++.+.+.+|||||||.+|+|-|..-|+||+|||
T Consensus        92 -tVeDNlifP~--~~r~rr~------dr---~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE  159 (223)
T COG4619          92 -TVEDNLIFPW--QIRNRRP------DR---AAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDE  159 (223)
T ss_pred             -chhhccccch--HHhccCC------Ch---HHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecC
Confidence             6655433211  1112222      12   234455555555  47888888888888888889999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765        201 PTTGLDSQSCSQCIKLLKMIS-QQGRTIICTIHQPSATLFQMFDQVYLLSGGQC  253 (606)
Q Consensus       201 PTsgLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~  253 (606)
                      |||.||+.+++.|-++|.++. .+++.++.+|||+.. ..+.+|+++-+..|++
T Consensus       160 ~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dq-a~rha~k~itl~~G~~  212 (223)
T COG4619         160 ITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQ-AIRHADKVITLQPGHA  212 (223)
T ss_pred             chhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHH-HhhhhheEEEeccCcc
Confidence            999999999999999999986 568999999999875 4589999999999875

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=1.2e-33  Score=318.65  Aligned_cols=204  Identities=21%  Similarity=0.315  Sum_probs=162.0

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF  106 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~  106 (606)
                      ..|+++||+++|        +++.+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.+++.       
T Consensus       323 ~~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p-~~G~i~~~~~-------  386 (556)
T PRK11819        323 KVIEAENLSKSF--------GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP-DSGTIKIGET-------  386 (556)
T ss_pred             eEEEEEeEEEEE--------CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCc-------
Confidence            469999999987        335799999999999999999999999999999999999876 5999999542       


Q ss_pred             cccEEEEccCC-CCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc--ccCCCCCCCCchhhhHH
Q psy13765        107 RRVSCYIQQDD-RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM--FLDEPTTSNPNDQKKRL  183 (606)
Q Consensus       107 ~~~~~yv~Q~~-~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~--~~de~~~~~s~g~~krl  183 (606)
                       ..+||++|++ .+++.+|+.+.+... ... .     ..+. ..++   +++++..-.+-  ..|.+...+|||||||+
T Consensus       387 -~~i~~v~q~~~~~~~~~tv~e~l~~~-~~~-~-----~~~~-~~~~---~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv  454 (556)
T PRK11819        387 -VKLAYVDQSRDALDPNKTVWEEISGG-LDI-I-----KVGN-REIP---SRAYVGRFNFKGGDQQKKVGVLSGGERNRL  454 (556)
T ss_pred             -eEEEEEeCchhhcCCCCCHHHHHHhh-ccc-c-----cccc-cHHH---HHHHHHhCCCChhHhcCchhhCCHHHHHHH
Confidence             1599999996 788889997776542 110 0     0111 1111   12233333331  35788999999999999


Q ss_pred             HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC-CcEE-EEcChhH
Q psy13765        184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG-GQCL-YQGATDQ  261 (606)
Q Consensus       184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~-G~~~-~~G~~~~  261 (606)
                      .||+||+.+|++|+|||||+|||+.++..+.+.|+++.  | |||++|||+. .+.++||++++|++ |++. +.|+.++
T Consensus       455 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~~~  530 (556)
T PRK11819        455 HLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGNFQE  530 (556)
T ss_pred             HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCCHHH
Confidence            99999999999999999999999999999999999873  4 8999999976 57789999999985 7776 5677655


Q ss_pred             H
Q psy13765        262 L  262 (606)
Q Consensus       262 ~  262 (606)
                      .
T Consensus       531 ~  531 (556)
T PRK11819        531 Y  531 (556)
T ss_pred             H
Confidence            4

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.4e-34  Score=324.38  Aligned_cols=202  Identities=22%  Similarity=0.307  Sum_probs=157.6

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF  106 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~  106 (606)
                      ..|+++||++.|        +++.+|+|+|++|++||+++|+||||||||||||+|+|..++ .+|+|.+++.       
T Consensus       311 ~~l~~~~l~~~y--------~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p-~~G~i~~~~~-------  374 (638)
T PRK10636        311 PLLKMEKVSAGY--------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAP-VSGEIGLAKG-------  374 (638)
T ss_pred             ceEEEEeeEEEe--------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEEECCC-------
Confidence            469999999987        346799999999999999999999999999999999999876 5999999742       


Q ss_pred             cccEEEEccCC--CCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc--cccCCCCCCCCchhhhH
Q psy13765        107 RRVSCYIQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV--MFLDEPTTSNPNDQKKR  182 (606)
Q Consensus       107 ~~~~~yv~Q~~--~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~--~~~de~~~~~s~g~~kr  182 (606)
                       ..+||++|+.  .+.+..|+.+.+...  .          ..-.++++   +.++..-.+  -..+.++..||||||||
T Consensus       375 -~~igy~~Q~~~~~l~~~~~~~~~~~~~--~----------~~~~~~~~---~~~L~~~~l~~~~~~~~~~~LSgGekqR  438 (638)
T PRK10636        375 -IKLGYFAQHQLEFLRADESPLQHLARL--A----------PQELEQKL---RDYLGGFGFQGDKVTEETRRFSGGEKAR  438 (638)
T ss_pred             -EEEEEecCcchhhCCccchHHHHHHHh--C----------chhhHHHH---HHHHHHcCCChhHhcCchhhCCHHHHHH
Confidence             2589999974  344444543322110  0          00112222   223322222  13467888888888888


Q ss_pred             HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE-EEcChhH
Q psy13765        183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL-YQGATDQ  261 (606)
Q Consensus       183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~-~~G~~~~  261 (606)
                      |.||++|+.+|++|||||||+|||+.+...+.+.|+++  .| |||++|||+. .+.++||++++|++|+++ +.|+.++
T Consensus       439 l~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~  514 (638)
T PRK10636        439 LVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVHDGKVEPFDGDLED  514 (638)
T ss_pred             HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEECCEEEEcCCCHHH
Confidence            88999999999999999999999999999999999987  34 9999999976 577899999999999997 8899887


Q ss_pred             HHH
Q psy13765        262 LVN  264 (606)
Q Consensus       262 ~~~  264 (606)
                      ..+
T Consensus       515 ~~~  517 (638)
T PRK10636        515 YQQ  517 (638)
T ss_pred             HHH
Confidence            643

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=100.00  E-value=5.3e-34  Score=290.72  Aligned_cols=197  Identities=21%  Similarity=0.272  Sum_probs=141.2

Q ss_pred             eeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEE-----------ECCccC
Q psy13765         33 DLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQIL-----------TNGHSR  101 (606)
Q Consensus        33 nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~-----------~~G~~~  101 (606)
                      ||+++|+       ..+.+|+|+| .+++||+++|+||||||||||||+|+|+.++ .+|+|.           ++|++.
T Consensus         5 ~~~~~y~-------~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p-~~G~I~~~~~~~~~~~~~~g~~~   75 (255)
T cd03236           5 EPVHRYG-------PNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKP-NLGKFDDPPDWDEILDEFRGSEL   75 (255)
T ss_pred             Ccceeec-------CcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCC-CCceEeeccccchhhhhccCchh
Confidence            6677763       1235999999 5999999999999999999999999999877 599996           778654


Q ss_pred             Ch--hh-hc--ccEEEEccCCCCCCCCcH-HHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCccc-ccCCCCC
Q psy13765        102 NI--NA-FR--RVSCYIQQDDRLQPLLTI-ENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM-FLDEPTT  173 (606)
Q Consensus       102 ~~--~~-~~--~~~~yv~Q~~~l~~~ltv-~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~-~~de~~~  173 (606)
                      ..  .. .+  ..++|++|+...++. ++ +++...  +           +.. .+.++   .+++..-++- ..+.+..
T Consensus        76 ~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~--l-----------~~~~~~~~~---~~~l~~~gl~~~~~~~~~  138 (255)
T cd03236          76 QNYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGEL--L-----------KKKDERGKL---DELVDQLELRHVLDRNID  138 (255)
T ss_pred             hhhhHHhhhcccceeeecchhccCch-HHHHHHHHH--h-----------chhHHHHHH---HHHHHHcCCchhhcCChh
Confidence            31  11 11  247899998877774 33 222221  0           000 11111   2222222221 2455556


Q ss_pred             CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765        174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC  253 (606)
Q Consensus       174 ~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~  253 (606)
                      .+|+|||||+.||++|+.+|+++++||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|+ |++
T Consensus       139 ~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~-~~~  216 (255)
T cd03236         139 QLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY-GEP  216 (255)
T ss_pred             hCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC-CCC
Confidence            66666666666777777779999999999999999999999999999888999999999976 4667899999995 556


Q ss_pred             EEEc
Q psy13765        254 LYQG  257 (606)
Q Consensus       254 ~~~G  257 (606)
                      .+.|
T Consensus       217 ~~~~  220 (255)
T cd03236         217 GAYG  220 (255)
T ss_pred             Ccce
Confidence            5544

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=1.3e-33  Score=318.74  Aligned_cols=198  Identities=21%  Similarity=0.300  Sum_probs=160.5

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhh
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA  105 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~  105 (606)
                      ...++++|++++|.        +. .|+++|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++        
T Consensus       338 ~~~l~~~~ls~~~~--------~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p-~~G~I~~~--------  399 (590)
T PRK13409        338 ETLVEYPDLTKKLG--------DF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP-DEGEVDPE--------  399 (590)
T ss_pred             ceEEEEcceEEEEC--------CE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEEe--------
Confidence            34699999999862        22 49999999999999999999999999999999999876 58999985        


Q ss_pred             hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHH
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLS  184 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~  184 (606)
                        ..++|++|+..+.+.+||.+.+... ...        .+..  +++   .+++..-.+- ..|.+...|||||||||+
T Consensus       400 --~~i~y~~Q~~~~~~~~tv~e~l~~~-~~~--------~~~~--~~~---~~~L~~l~l~~~~~~~~~~LSGGe~QRva  463 (590)
T PRK13409        400 --LKISYKPQYIKPDYDGTVEDLLRSI-TDD--------LGSS--YYK---SEIIKPLQLERLLDKNVKDLSGGELQRVA  463 (590)
T ss_pred             --eeEEEecccccCCCCCcHHHHHHHH-hhh--------cChH--HHH---HHHHHHCCCHHHHhCCcccCCHHHHHHHH
Confidence              1589999999888889998776542 111        1111  111   2222222221 468899999999999999


Q ss_pred             HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765        185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT  259 (606)
Q Consensus       185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~  259 (606)
                      ||+||+.+|++|+|||||+|||+.++..+.++|++++++ |.|||+++||+. .+..+|||+++|++ ++...|..
T Consensus       464 iAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~~-~~~~~g~~  537 (590)
T PRK13409        464 IAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFEG-EPGKHGHA  537 (590)
T ss_pred             HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcC-cceeeeec
Confidence            999999999999999999999999999999999999874 899999999976 57789999999964 77776653

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=2e-33  Score=316.54  Aligned_cols=203  Identities=21%  Similarity=0.316  Sum_probs=161.2

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF  106 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~  106 (606)
                      ..++++|+++++        +++.+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.+++.       
T Consensus       321 ~~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~G~i~~~~~-------  384 (552)
T TIGR03719       321 KVIEAENLSKGF--------GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP-DSGTIKIGET-------  384 (552)
T ss_pred             eEEEEeeEEEEE--------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CCeEEEECCc-------
Confidence            469999999987        235799999999999999999999999999999999999876 5999999542       


Q ss_pred             cccEEEEccCC-CCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc--ccCCCCCCCCchhhhHH
Q psy13765        107 RRVSCYIQQDD-RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM--FLDEPTTSNPNDQKKRL  183 (606)
Q Consensus       107 ~~~~~yv~Q~~-~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~--~~de~~~~~s~g~~krl  183 (606)
                       ..+||++|++ .+++.+|+.+.+... ...      ..++. ..++   +++++..-.+-  ..|.+...+||||||||
T Consensus       385 -~~i~~v~q~~~~~~~~~tv~e~l~~~-~~~------~~~~~-~~~~---~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv  452 (552)
T TIGR03719       385 -VKLAYVDQSRDALDPNKTVWEEISGG-LDI------IQLGK-REVP---SRAYVGRFNFKGSDQQKKVGQLSGGERNRV  452 (552)
T ss_pred             -eEEEEEeCCccccCCCCcHHHHHHhh-ccc------cccCc-chHH---HHHHHHhCCCChhHhcCchhhCCHHHHHHH
Confidence             1599999996 478888987766542 110      01111 1112   12333333332  36888999999999999


Q ss_pred             HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC-CcEE-EEcChhH
Q psy13765        184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG-GQCL-YQGATDQ  261 (606)
Q Consensus       184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~-G~~~-~~G~~~~  261 (606)
                      .||+||+.+|++|+|||||+|||+.++..+.+.|+++.  | |||++|||+. .+.++||++++|++ |++. +.|+.++
T Consensus       453 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~~~~  528 (552)
T TIGR03719       453 HLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGNYSE  528 (552)
T ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCCHHH
Confidence            99999999999999999999999999999999999873  4 8999999976 57789999999986 5776 5566544

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=1.5e-33  Score=346.72  Aligned_cols=216  Identities=23%  Similarity=0.296  Sum_probs=165.9

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---h
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---I  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~  103 (606)
                      -.|+++||+++|+.      +.+.+|+|||++|++||.+||+|+||||||||+++|.|+.+  .+|+|.+||.+.+   .
T Consensus      1216 g~I~f~nVs~~Y~~------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~--~~G~I~IdG~di~~i~~ 1287 (1490)
T TIGR01271      1216 GQMDVQGLTAKYTE------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS--TEGEIQIDGVSWNSVTL 1287 (1490)
T ss_pred             CeEEEEEEEEEeCC------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEcccCCH
Confidence            36999999999853      34679999999999999999999999999999999999975  4899999998753   5


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHH----HHHHHHHHhcCCcc--cccCCCCCCCCc
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKK----RLSIALELINNPRV--MFLDEPTTSNPN  177 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrq----Rv~ia~~L~~~~~~--~~~de~~~~~s~  177 (606)
                      ..+|+.++||||++.+|+. |+.+.++-.+          ..+-.+-.    ++.+...+...|+=  ...+|...++||
T Consensus      1288 ~~lR~~is~IpQdp~LF~G-TIR~NLdp~~----------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSg 1356 (1490)
T TIGR01271      1288 QTWRKAFGVIPQKVFIFSG-TFRKNLDPYE----------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSN 1356 (1490)
T ss_pred             HHHHhceEEEeCCCccCcc-CHHHHhCccc----------CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCH
Confidence            6789999999999999986 6654442211          01111111    11111111111110  022344456777


Q ss_pred             hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      |||||+.|||||+++|+||+||||||+||+.+...+.+.|++.. +++|||+++|+++. + ..||+|++|++|++++.|
T Consensus      1357 GQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~t-i-~~~DrIlvL~~G~ivE~g 1433 (1490)
T TIGR01271      1357 GHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEA-L-LECQQFLVIEGSSVKQYD 1433 (1490)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEeC
Confidence            77777778888888899999999999999999999999999864 47999999999863 4 669999999999999999


Q ss_pred             ChhHHHH
Q psy13765        258 ATDQLVN  264 (606)
Q Consensus       258 ~~~~~~~  264 (606)
                      +|+++.+
T Consensus      1434 ~p~~Ll~ 1440 (1490)
T TIGR01271      1434 SIQKLLN 1440 (1490)
T ss_pred             CHHHHHc
Confidence            9999863

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=4.5e-34  Score=269.98  Aligned_cols=222  Identities=23%  Similarity=0.356  Sum_probs=189.6

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECC-ccCC---
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG-HSRN---  102 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G-~~~~---  102 (606)
                      ..++++||++++        +.-.+|+|+||++.+||+-+|+|||||||||++++|+|..+| .+|+|+++| .++.   
T Consensus         4 ~iL~~~~vsVsF--------~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp-~~G~v~f~g~~dl~~~~   74 (249)
T COG4674           4 IILYLDGVSVSF--------GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP-QEGEVLFDGDTDLTKLP   74 (249)
T ss_pred             ceEEEeceEEEE--------cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCC-CcceEEEcCchhhccCC
Confidence            578999999986        557799999999999999999999999999999999999776 589999999 4432   


Q ss_pred             h-hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCc-----cccCChHHHHHHHHHHHHhcCCcccccCCCCCCCC
Q psy13765        103 I-NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTR-----SSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNP  176 (606)
Q Consensus       103 ~-~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~-----~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s  176 (606)
                      . ...|..||.-||.|..|+.+||.+.++..   ...++.     ...++.-||.|+.-..+++.-.+  -.|.+.+.||
T Consensus        75 e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA---~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~--~~~~~A~~LS  149 (249)
T COG4674          75 EHRIARAGIGRKFQKPTVFENLTVRENLELA---LNRDKSVFASLFARLRAEERRRIDELLATIGLGD--ERDRLAALLS  149 (249)
T ss_pred             HHHHHHhccCccccCCeehhhccHHHHHHHH---hcCCcchHHHhhhhcChhHHHHHHHHHHHcccch--hhhhhhhhhc
Confidence            1 23356799999999999999998877642   223332     34578899999987777665422  3577788899


Q ss_pred             chhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEE
Q psy13765        177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ  256 (606)
Q Consensus       177 ~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~  256 (606)
                      -||||+++|++.++++|++|+||||++|+-.....+.-++|+.++. +++|+++.||+. .+.+++|+|.+|++|.+...
T Consensus       150 HGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh~G~VL~E  227 (249)
T COG4674         150 HGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLHEGSVLAE  227 (249)
T ss_pred             cchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEeccceeec
Confidence            9999999999999999999999999999999999999999999986 589999999987 58899999999999999999


Q ss_pred             cChhHHHH
Q psy13765        257 GATDQLVN  264 (606)
Q Consensus       257 G~~~~~~~  264 (606)
                      |+.+++.+
T Consensus       228 Gsld~v~~  235 (249)
T COG4674         228 GSLDEVQN  235 (249)
T ss_pred             ccHHHhhc
Confidence            99998753

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=5e-33  Score=262.97  Aligned_cols=153  Identities=34%  Similarity=0.656  Sum_probs=133.5

Q ss_pred             EEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhhhc
Q psy13765         31 FKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INAFR  107 (606)
Q Consensus        31 ~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~~~  107 (606)
                      ++|+++.++        .+.+++++|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..   ....+
T Consensus         2 ~~~~~~~~~--------~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~~~~~~~~~~~~~~   72 (157)
T cd00267           2 IENLSFRYG--------GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGKDIAKLPLEELR   72 (157)
T ss_pred             eEEEEEEeC--------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEEcccCCHHHHH
Confidence            678888863        24699999999999999999999999999999999999876 5999999997643   23456


Q ss_pred             ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHH
Q psy13765        108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL  187 (606)
Q Consensus       108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~  187 (606)
                      +.++|++|                             ||+||+||+++|++++.+                         
T Consensus        73 ~~i~~~~q-----------------------------lS~G~~~r~~l~~~l~~~-------------------------   98 (157)
T cd00267          73 RRIGYVPQ-----------------------------LSGGQRQRVALARALLLN-------------------------   98 (157)
T ss_pred             hceEEEee-----------------------------CCHHHHHHHHHHHHHhcC-------------------------
Confidence            77999999                             888888888866666666                         


Q ss_pred             hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765        188 ELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ  252 (606)
Q Consensus       188 aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~  252 (606)
                           |++++|||||+|||..++..+.+.+++++++++|+++++|+++ .+...||+++.+++|+
T Consensus        99 -----~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~  157 (157)
T cd00267          99 -----PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDGK  157 (157)
T ss_pred             -----CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence                 9999999999999999999999999999877899999999976 4667789999999875

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=9.1e-33  Score=317.28  Aligned_cols=204  Identities=21%  Similarity=0.349  Sum_probs=155.1

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF  106 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~  106 (606)
                      ..|+++||++.|+       +.+.+|+|+|++|++||+++|+||||||||||||+|+|+.+| .+|+|.+++        
T Consensus       507 ~~L~~~~ls~~y~-------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p-~~G~I~~~~--------  570 (718)
T PLN03073        507 PIISFSDASFGYP-------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP-SSGTVFRSA--------  570 (718)
T ss_pred             ceEEEEeeEEEeC-------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCceEEECC--------
Confidence            4699999999873       234699999999999999999999999999999999999876 589999875        


Q ss_pred             cccEEEEccCCCCCCCCcH--HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc--ccCCCCCCCCchhhhH
Q psy13765        107 RRVSCYIQQDDRLQPLLTI--ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM--FLDEPTTSNPNDQKKR  182 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv--~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~--~~de~~~~~s~g~~kr  182 (606)
                      +..+||++|+..  +.+++  ...+......       ...+   .+++   +.++..-.+-  ..+.+...||||||||
T Consensus       571 ~~~igyv~Q~~~--~~l~~~~~~~~~~~~~~-------~~~~---~~~i---~~~L~~~gl~~~~~~~~~~~LSgGqkqR  635 (718)
T PLN03073        571 KVRMAVFSQHHV--DGLDLSSNPLLYMMRCF-------PGVP---EQKL---RAHLGSFGVTGNLALQPMYTLSGGQKSR  635 (718)
T ss_pred             ceeEEEEecccc--ccCCcchhHHHHHHHhc-------CCCC---HHHH---HHHHHHCCCChHHhcCCccccCHHHHHH
Confidence            246999999853  22332  2121111100       0011   1222   2233332331  3567888899999999


Q ss_pred             HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE-EEcChhH
Q psy13765        183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL-YQGATDQ  261 (606)
Q Consensus       183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~-~~G~~~~  261 (606)
                      |.||++|+.+|++|+|||||+|||+.+...+.+.|++.  +| |||++|||+. .+..+||++++|++|+++ +.|+.++
T Consensus       636 vaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~~G~i~~~~g~~~~  711 (718)
T PLN03073        636 VAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVSEGKVTPFHGTFHD  711 (718)
T ss_pred             HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHH
Confidence            99999999999999999999999999999998888764  34 9999999976 577899999999999998 7888776


Q ss_pred             HHHH
Q psy13765        262 LVNY  265 (606)
Q Consensus       262 ~~~~  265 (606)
                      ...+
T Consensus       712 ~~~~  715 (718)
T PLN03073        712 YKKT  715 (718)
T ss_pred             HHHH
Confidence            5443

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=3.5e-33  Score=267.81  Aligned_cols=219  Identities=23%  Similarity=0.336  Sum_probs=173.7

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---hh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---NA  105 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~~  105 (606)
                      ++++|+.+.+..+.   ..++++|+++|++|.+|+++.|+|.||||||||+|+|+|...+ .+|+|.++|.+++.   .+
T Consensus         2 i~~~~~~~~f~~g~---~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~-t~G~I~Idg~dVtk~~~~~   77 (263)
T COG1101           2 ISLSNATKTFFKGT---PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKP-TSGQILIDGVDVTKKSVAK   77 (263)
T ss_pred             cccccceeeecCCC---hhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcccc-CCceEEECceecccCCHHH
Confidence            45667777664331   3468899999999999999999999999999999999999887 59999999987653   22


Q ss_pred             hcccEEEEccCCC--CCCCCcHHHHHHHcCCccccCCccccCCh--HHHHHHHHHHHHhcCCcc---cccCCCCCCCCch
Q psy13765        106 FRRVSCYIQQDDR--LQPLLTIENVMSLLGLDESQNTRSSQLSG--GQKKRLSIALELINNPRV---MFLDEPTTSNPND  178 (606)
Q Consensus       106 ~~~~~~yv~Q~~~--l~~~ltv~~~l~~~gl~~~~~~~~~~lSg--GqrqRv~ia~~L~~~~~~---~~~de~~~~~s~g  178 (606)
                      ....++-|+|||.  ..+.+|++|.+.......   . -+++|.  .+++|-. =++.+...++   -.++.|..-+|||
T Consensus        78 RA~~larVfQdp~~gt~~~lTieENl~la~~Rg---~-~rgl~~~ln~~~~~~-f~~~l~~l~lgLenrL~~~iglLSGG  152 (263)
T COG1101          78 RANLLARVFQDPLAGTAPELTIEENLALAESRG---K-KRGLSSALNERRRSS-FRERLARLGLGLENRLSDRIGLLSGG  152 (263)
T ss_pred             HhhHHHHHhcchhhCCcccccHHHHHHHHHhcC---c-ccccchhhhHHHHHH-HHHHHhhcccchhhhhcChhhhccch
Confidence            3345788999985  588999988776543222   1 123443  3333333 3333333333   1678899999999


Q ss_pred             hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      |||-+++++|-++.|+||+|||-|++|||.++..+++.-.++.++ +.|.+|+||+++. ..++-+|.++|++|+|+.+-
T Consensus       153 QRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~-Al~yG~RlImLh~G~IvlDv  231 (263)
T COG1101         153 QRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMED-ALDYGNRLIMLHSGKIVLDV  231 (263)
T ss_pred             HHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHH-HHhhCCeEEEEeCCeEEEEc
Confidence            999999999999999999999999999999999999999998764 7899999999885 56999999999999999763

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1e-32  Score=314.97  Aligned_cols=209  Identities=23%  Similarity=0.320  Sum_probs=155.7

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcc
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR  108 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~  108 (606)
                      |+++||+++|        +.+.+|+||||+|++|++++|+||||||||||||+|+|..++ .+|+|.++|..        
T Consensus         2 i~i~nls~~~--------g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~p-d~G~I~~~~~~--------   64 (638)
T PRK10636          2 IVFSSLQIRR--------GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISA-DGGSYTFPGNW--------   64 (638)
T ss_pred             EEEEEEEEEe--------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEecCCC--------
Confidence            7899999997        446799999999999999999999999999999999998776 59999998742        


Q ss_pred             cEEEEccCCCCCCCCcHHH-HHHHcC----Ccc------ccC--CccccCCh------H--HHHHHHHHHHHhcCCcc--
Q psy13765        109 VSCYIQQDDRLQPLLTIEN-VMSLLG----LDE------SQN--TRSSQLSG------G--QKKRLSIALELINNPRV--  165 (606)
Q Consensus       109 ~~~yv~Q~~~l~~~ltv~~-~l~~~g----l~~------~~~--~~~~~lSg------G--qrqRv~ia~~L~~~~~~--  165 (606)
                      .++|++|++.... .++-+ +.....    +..      ..+  .....+.+      +  .++|+   .+++..-.+  
T Consensus        65 ~i~~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~L~~lgl~~  140 (638)
T PRK10636         65 QLAWVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRA---ASLLHGLGFSN  140 (638)
T ss_pred             EEEEEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHH---HHHHHhCCCCc
Confidence            3788888653332 33322 211100    000      000  00000110      1  12333   334444333  


Q ss_pred             cccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhccee
Q psy13765        166 MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQV  245 (606)
Q Consensus       166 ~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v  245 (606)
                      -.+|.+...+||||||||.||++|+.+|++|||||||+|||+.+...+.+.|+++   +.|||++|||.. .+.++||++
T Consensus       141 ~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~l~~~~d~i  216 (638)
T PRK10636        141 EQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-FLDPIVDKI  216 (638)
T ss_pred             hhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHHhcCEE
Confidence            1468899999999999999999999999999999999999999999999998765   569999999976 577899999


Q ss_pred             eeecCCcEE-EEcChhHH
Q psy13765        246 YLLSGGQCL-YQGATDQL  262 (606)
Q Consensus       246 ~~L~~G~~~-~~G~~~~~  262 (606)
                      ++|++|++. |.|+.++.
T Consensus       217 ~~L~~G~i~~~~g~~~~~  234 (638)
T PRK10636        217 IHIEQQSLFEYTGNYSSF  234 (638)
T ss_pred             EEEeCCEEEEecCCHHHH
Confidence            999999996 67876543

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=1.5e-32  Score=313.97  Aligned_cols=204  Identities=21%  Similarity=0.384  Sum_probs=161.0

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF  106 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~  106 (606)
                      ..|+++||++.|        +++++|+|+|++|++|++++|+|||||||||||++|+|..+| .+|+|.+ |..      
T Consensus       318 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p-~~G~i~~-~~~------  381 (635)
T PRK11147        318 IVFEMENVNYQI--------DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA-DSGRIHC-GTK------  381 (635)
T ss_pred             ceEEEeeeEEEE--------CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCcEEEE-CCC------
Confidence            469999999987        335799999999999999999999999999999999999876 5999998 432      


Q ss_pred             cccEEEEccCC-CCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc--ccCCCCCCCCchhhhHH
Q psy13765        107 RRVSCYIQQDD-RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM--FLDEPTTSNPNDQKKRL  183 (606)
Q Consensus       107 ~~~~~yv~Q~~-~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~--~~de~~~~~s~g~~krl  183 (606)
                       -.+||++|+. .+++.+|+.+.+.... ...      ... +..++   +++++..-.+.  ..+.++..|||||||||
T Consensus       382 -~~i~y~~q~~~~l~~~~tv~e~l~~~~-~~~------~~~-~~~~~---~~~~l~~~~l~~~~~~~~~~~LSgGekqRl  449 (635)
T PRK11147        382 -LEVAYFDQHRAELDPEKTVMDNLAEGK-QEV------MVN-GRPRH---VLGYLQDFLFHPKRAMTPVKALSGGERNRL  449 (635)
T ss_pred             -cEEEEEeCcccccCCCCCHHHHHHhhc-ccc------ccc-chHHH---HHHHHHhcCCCHHHHhChhhhCCHHHHHHH
Confidence             1599999985 5888899877665321 110      011 11122   23333332221  35778899999999999


Q ss_pred             HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec-CCcEE-EEcChhH
Q psy13765        184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS-GGQCL-YQGATDQ  261 (606)
Q Consensus       184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~-~G~~~-~~G~~~~  261 (606)
                      .||++|+.+|++|||||||+|||+.+...+.+.|+++   +.|||++|||.. .+..+||++++++ +|++. |.|+.++
T Consensus       450 ~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~y~~  525 (635)
T PRK11147        450 LLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGGYHD  525 (635)
T ss_pred             HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence            9999999999999999999999999999999999876   459999999976 5778999999997 79986 4566554


Q ss_pred             H
Q psy13765        262 L  262 (606)
Q Consensus       262 ~  262 (606)
                      -
T Consensus       526 y  526 (635)
T PRK11147        526 A  526 (635)
T ss_pred             H
Confidence            3

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=5.2e-32  Score=309.56  Aligned_cols=210  Identities=23%  Similarity=0.299  Sum_probs=154.8

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhc
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR  107 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~  107 (606)
                      .|+++||+++|        +.+.+|+||||+|++|++++|+||||||||||||+|+|..++ .+|+|.++|..       
T Consensus         3 ~l~i~~ls~~~--------~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p-~~G~I~~~~~~-------   66 (635)
T PRK11147          3 LISIHGAWLSF--------SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLL-DDGRIIYEQDL-------   66 (635)
T ss_pred             EEEEeeEEEEe--------CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-CCeEEEeCCCC-------
Confidence            58999999997        346799999999999999999999999999999999999776 58999998731       


Q ss_pred             ccEEEEccCCCCCCCCcHHHHHH-H-----------------cCCccccC---Cc------cccCCh-HHHHHHHHHHHH
Q psy13765        108 RVSCYIQQDDRLQPLLTIENVMS-L-----------------LGLDESQN---TR------SSQLSG-GQKKRLSIALEL  159 (606)
Q Consensus       108 ~~~~yv~Q~~~l~~~ltv~~~l~-~-----------------~gl~~~~~---~~------~~~lSg-GqrqRv~ia~~L  159 (606)
                       .++|++|++......++.+.+. .                 +..+...+   ..      .....+ ..++|+.   ++
T Consensus        67 -~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~  142 (635)
T PRK11147         67 -IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRIN---EV  142 (635)
T ss_pred             -EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHH---HH
Confidence             2577777654333334322110 0                 00000000   00      000011 1133443   23


Q ss_pred             hcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH
Q psy13765        160 INNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLF  239 (606)
Q Consensus       160 ~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~  239 (606)
                      +..-.+- .|.++..|||||||||.||++|+.+|+||||||||+|||+.+...+.+.|+++   +.|||++|||+. .+.
T Consensus       143 l~~lgl~-~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd~~-~l~  217 (635)
T PRK11147        143 LAQLGLD-PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDRS-FIR  217 (635)
T ss_pred             HHhCCCC-CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCCHH-HHH
Confidence            3332222 48899999999999999999999999999999999999999999999999887   359999999976 577


Q ss_pred             hhcceeeeecCCcEE-EEcChhHH
Q psy13765        240 QMFDQVYLLSGGQCL-YQGATDQL  262 (606)
Q Consensus       240 ~~~D~v~~L~~G~~~-~~G~~~~~  262 (606)
                      +.||+++.|++|+++ +.|+.++.
T Consensus       218 ~~~d~i~~L~~G~i~~~~g~~~~~  241 (635)
T PRK11147        218 NMATRIVDLDRGKLVSYPGNYDQY  241 (635)
T ss_pred             HhcCeEEEEECCEEEEecCCHHHH
Confidence            899999999999997 56877653

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.98  E-value=6.8e-32  Score=309.33  Aligned_cols=196  Identities=20%  Similarity=0.311  Sum_probs=147.5

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhc
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR  107 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~  107 (606)
                      .|+++||++.++       +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.+++        +
T Consensus       451 ~i~~~nv~~~~~-------~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~-~~G~i~~~~--------~  514 (659)
T TIGR00954       451 GIKFENIPLVTP-------NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPV-YGGRLTKPA--------K  514 (659)
T ss_pred             eEEEEeeEEECC-------CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEeecC--------C
Confidence            599999999863       234699999999999999999999999999999999999876 589998764        4


Q ss_pred             ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHH------hcCCc-ccccCCCCCCCCchhh
Q psy13765        108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALEL------INNPR-VMFLDEPTTSNPNDQK  180 (606)
Q Consensus       108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L------~~~~~-~~~~de~~~~~s~g~~  180 (606)
                      +.++||+|++.+++. |+.+.+.. +... .+..-.+.+   .+++.-+.+.      +.+|. .-..++....+|||||
T Consensus       515 ~~i~~v~Q~~~l~~~-tv~eni~~-~~~~-~~~~~~~~~---~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqk  588 (659)
T TIGR00954       515 GKLFYVPQRPYMTLG-TLRDQIIY-PDSS-EDMKRRGLS---DKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEK  588 (659)
T ss_pred             CcEEEECCCCCCCCc-CHHHHHhc-CCCh-hhhhccCCC---HHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHH
Confidence            679999999998887 88665542 2110 000000111   1222111111      11111 0011223478999999


Q ss_pred             hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765        181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG  250 (606)
Q Consensus       181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~  250 (606)
                      ||++|||||+++|++++|||||+|||+.++..+.+.+++   .|+|+|+++|+++.  .+.+|++++|++
T Consensus       589 QRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~--~~~~d~il~l~~  653 (659)
T TIGR00954       589 QRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSL--WKYHEYLLYMDG  653 (659)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHH--HHhCCEEEEEeC
Confidence            999999999999999999999999999999999998875   38999999999873  488999999963

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=2.6e-32  Score=283.47  Aligned_cols=197  Identities=28%  Similarity=0.459  Sum_probs=158.6

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~  103 (606)
                      -.+.|+|++|.|.       +.+++|+|+|+++++|+.+|++||||+||||++++|-+++.+ .+|.|.+||+++   ..
T Consensus       261 g~v~F~~V~F~y~-------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~-~sG~I~id~qdir~vtq  332 (497)
T COG5265         261 GAVAFINVSFAYD-------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDV-NSGSITIDGQDIRDVTQ  332 (497)
T ss_pred             ceEEEEEEEeecc-------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCC-cCceEEEcchhHHHhHH
Confidence            3588999999984       457899999999999999999999999999999999999876 499999999864   34


Q ss_pred             hhhcccEEEEccCCCCCCCC------------cHHHHHHHc---CC-------ccccCCccc----cCChHHHHHHHHHH
Q psy13765        104 NAFRRVSCYIQQDDRLQPLL------------TIENVMSLL---GL-------DESQNTRSS----QLSGGQKKRLSIAL  157 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~l------------tv~~~l~~~---gl-------~~~~~~~~~----~lSgGqrqRv~ia~  157 (606)
                      +.+|+.||.||||..|+.+.            |-+|+....   .+       .+-.++.++    .|||||||||+|| 
T Consensus       333 ~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaia-  411 (497)
T COG5265         333 QSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIA-  411 (497)
T ss_pred             HHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHH-
Confidence            67899999999999887642            223333222   11       112223332    3566666666555 


Q ss_pred             HHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q psy13765        158 ELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSAT  237 (606)
Q Consensus       158 ~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~  237 (606)
                                                   |+++++|+||++||.||.||..+.+++...|++++ .|+|.+++.|..+. 
T Consensus       412 -----------------------------r~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst-  460 (497)
T COG5265         412 -----------------------------RTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST-  460 (497)
T ss_pred             -----------------------------HHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-
Confidence                                         55555599999999999999999999999999987 58999999999885 


Q ss_pred             HHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        238 LFQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       238 i~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      + --+|+|++|++|++++.|++++++.
T Consensus       461 i-~~adeiivl~~g~i~erg~h~~ll~  486 (497)
T COG5265         461 I-IDADEIIVLDNGRIVERGTHEELLA  486 (497)
T ss_pred             c-cCCceEEEeeCCEEEecCcHHHHHH
Confidence            4 4699999999999999999999876

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.98  E-value=5.4e-32  Score=251.37  Aligned_cols=215  Identities=21%  Similarity=0.384  Sum_probs=150.0

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCc---cCC--
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH---SRN--  102 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~---~~~--  102 (606)
                      -++++++++.|        +....-+||||++.|||+++|+|.|||||||||+||+++..| ..|+|.+.-+   +.+  
T Consensus         6 LL~V~~lsk~Y--------g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p-~~G~v~Y~~r~~~~~dl~   76 (258)
T COG4107           6 LLSVSGLSKLY--------GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTP-DAGTVTYRMRDGQPRDLY   76 (258)
T ss_pred             ceeehhhhhhh--------CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCC-CCCeEEEEcCCCCchhHh
Confidence            58889999886        445578999999999999999999999999999999999887 5999998753   211  


Q ss_pred             ---hhh----hcccEEEEccCCCCCCCCcH------HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc--cc
Q psy13765        103 ---INA----FRRVSCYIQQDDRLQPLLTI------ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV--MF  167 (606)
Q Consensus       103 ---~~~----~~~~~~yv~Q~~~l~~~ltv------~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~--~~  167 (606)
                         ..+    .|..-|+|.|+|.-=-.++|      .|-+...|-.|+-+     +    |   +-|...+.+-.+  .-
T Consensus        77 ~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~-----i----R---~~a~~WL~~VEI~~~R  144 (258)
T COG4107          77 TMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGN-----I----R---AEAQDWLEEVEIDLDR  144 (258)
T ss_pred             hhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhh-----H----H---HHHHHHHHhcccCccc
Confidence               111    23457999999753222222      22222222222111     0    0   001111111111  12


Q ss_pred             cCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceee
Q psy13765        168 LDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVY  246 (606)
Q Consensus       168 ~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~  246 (606)
                      .|+.++..|||++||+.|||-|.+.|+++|+||||.|||..-+..++++++.|..+ |.+++++|||.. .+.-++||.+
T Consensus       145 iDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~-VarLla~rlm  223 (258)
T COG4107         145 IDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLADRLM  223 (258)
T ss_pred             ccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhH-HHHHhhhcce
Confidence            23333444455555555555555559999999999999999999999999999876 999999999976 4556899999


Q ss_pred             eecCCcEEEEcChhHHHH
Q psy13765        247 LLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       247 ~L~~G~~~~~G~~~~~~~  264 (606)
                      +|++|++++.|-++.+++
T Consensus       224 vmk~g~vve~GLTDrvLD  241 (258)
T COG4107         224 VMKQGQVVESGLTDRVLD  241 (258)
T ss_pred             eecCCCEecccccccccc
Confidence            999999999999887753

>PLN03232 ABC transporter C family member; Provisional

Probab=99.98  E-value=1.4e-31  Score=329.92  Aligned_cols=208  Identities=22%  Similarity=0.338  Sum_probs=160.0

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhc
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR  107 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~  107 (606)
                      .|+++|++|+|+.+     .++++|+|+|+++++||.++|+||||||||||+++|.|..++ .+|.+.         .++
T Consensus       614 ~I~~~~vsF~y~~~-----~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~-~~G~i~---------~~~  678 (1495)
T PLN03232        614 AISIKNGYFSWDSK-----TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH-AETSSV---------VIR  678 (1495)
T ss_pred             cEEEEeeEEEcCCC-----CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcc-cCCCEE---------Eec
Confidence            69999999998531     235799999999999999999999999999999999999876 467553         346


Q ss_pred             ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcC----Cc--ccccCCCCCCCCchhhh
Q psy13765        108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINN----PR--VMFLDEPTTSNPNDQKK  181 (606)
Q Consensus       108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~----~~--~~~~de~~~~~s~g~~k  181 (606)
                      +.++||+|++.++.. |+.|.+.. |-         ..+-.+-+++.-+.+|..+    |+  --..+|....|||||||
T Consensus       679 ~~Iayv~Q~p~Lf~g-TIreNI~f-g~---------~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQ  747 (1495)
T PLN03232        679 GSVAYVPQVSWIFNA-TVRENILF-GS---------DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQ  747 (1495)
T ss_pred             CcEEEEcCccccccc-cHHHHhhc-CC---------ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHH
Confidence            789999999999875 66544432 21         1122233333333333221    11  12334556678888888


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKL-LKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD  260 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~-l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~  260 (606)
                      |++||||+.++|+|++||||||+||+.++..+++. ++.. .+|+|+|++||+++.  .+.+|+|++|++|++++.|+.+
T Consensus       748 RIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~~--l~~aD~Ii~L~~G~i~~~Gt~~  824 (1495)
T PLN03232        748 RVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLHF--LPLMDRIILVSEGMIKEEGTFA  824 (1495)
T ss_pred             HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChhh--HHhCCEEEEEeCCEEEEecCHH
Confidence            88899999999999999999999999999988765 5443 358999999999863  5789999999999999999999


Q ss_pred             HHHH
Q psy13765        261 QLVN  264 (606)
Q Consensus       261 ~~~~  264 (606)
                      ++.+
T Consensus       825 eL~~  828 (1495)
T PLN03232        825 ELSK  828 (1495)
T ss_pred             HHHh
Confidence            8864

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.98  E-value=2.8e-31  Score=260.94  Aligned_cols=209  Identities=20%  Similarity=0.285  Sum_probs=168.3

Q ss_pred             eEEEEEeeEEEEecCC----c-----------c-cccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCC
Q psy13765         27 IEIKFKDLTYTVSTGL----G-----------F-KQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGV   90 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~----~-----------~-~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~   90 (606)
                      +.|+++||++.++...    .           . ......+|+||||++++||.++|+|+||||||||||+|+|.++| .
T Consensus         2 ~~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~P-t   80 (249)
T COG1134           2 VVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKP-T   80 (249)
T ss_pred             cEEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCC-C
Confidence            4688999999886431    0           1 12345799999999999999999999999999999999999887 5


Q ss_pred             ccEEEECCccCChhhhcccEEEEccCCC--------CCCCCc-------HHHHHHHcCCccccCCccccCChHHHHHHHH
Q psy13765         91 TGQILTNGHSRNINAFRRVSCYIQQDDR--------LQPLLT-------IENVMSLLGLDESQNTRSSQLSGGQKKRLSI  155 (606)
Q Consensus        91 ~G~I~~~G~~~~~~~~~~~~~yv~Q~~~--------l~~~lt-------v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~i  155 (606)
                      +|+|.++|+....-+  -..|+-||-..        ++..+|       ++++++..+|.+..|.+++++|.||+-|++.
T Consensus        81 ~G~v~v~G~v~~li~--lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaF  158 (249)
T COG1134          81 SGKVKVTGKVAPLIE--LGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAF  158 (249)
T ss_pred             CceEEEcceEehhhh--cccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHH
Confidence            999999997532211  12333222110        111222       2667777888888888888888888888887


Q ss_pred             HHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765        156 ALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS  235 (606)
Q Consensus       156 a~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~  235 (606)
                      |.+...+                              |+||++||-.+-.|+.-++...+.++++.++++|||+++||+.
T Consensus       159 sia~~~~------------------------------pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~  208 (249)
T COG1134         159 SVATHVE------------------------------PDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG  208 (249)
T ss_pred             hhhhhcC------------------------------CCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            7766666                              9999999999999999999999999999888899999999976


Q ss_pred             hHHHhhcceeeeecCCcEEEEcChhHHHHHHHhC
Q psy13765        236 ATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSV  269 (606)
Q Consensus       236 ~~i~~~~D~v~~L~~G~~~~~G~~~~~~~~f~~~  269 (606)
                       .+.++|||+++|++|++.+.|+++++.++++..
T Consensus       209 -~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~~  241 (249)
T COG1134         209 -AIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEED  241 (249)
T ss_pred             -HHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHHh
Confidence             688999999999999999999999999887653

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.97  E-value=1.2e-31  Score=250.98  Aligned_cols=205  Identities=27%  Similarity=0.438  Sum_probs=166.3

Q ss_pred             EEEEEeeEEEEecCCc-ccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhh-
Q psy13765         28 EIKFKDLTYTVSTGLG-FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA-  105 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~-~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~-  105 (606)
                      -++++|+++++....+ +++....+++.|||++++|+.+||+|.||||||||.|+|+|..+| .+|+|.+||++....+ 
T Consensus         4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~P-TsG~il~n~~~L~~~Dy   82 (267)
T COG4167           4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP-TSGEILINDHPLHFGDY   82 (267)
T ss_pred             hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCC-CCceEEECCccccccch
Confidence            3678899988754322 334556799999999999999999999999999999999999887 6999999999764322 


Q ss_pred             --hcccEEEEccCCC--CCCCCcH-----------------------HHHHHHcCCc-cccCCccccCChHHHHHHHHHH
Q psy13765        106 --FRRVSCYIQQDDR--LQPLLTI-----------------------ENVMSLLGLD-ESQNTRSSQLSGGQKKRLSIAL  157 (606)
Q Consensus       106 --~~~~~~yv~Q~~~--l~~~ltv-----------------------~~~l~~~gl~-~~~~~~~~~lSgGqrqRv~ia~  157 (606)
                        ..+.|-.++||+.  +.|.+.+                       -+.++.+||- +.++-.+..||-||||||++||
T Consensus        83 ~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLAR  162 (267)
T COG4167          83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALAR  162 (267)
T ss_pred             HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHH
Confidence              2367999999985  5555544                       3445555653 3455666677777777777666


Q ss_pred             HHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCch
Q psy13765        158 ELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSA  236 (606)
Q Consensus       158 ~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~  236 (606)
                      ||+.+                              |+|++.||..++||...+.++.++.-+|.++ |.+-|.++.+.. 
T Consensus       163 ALIL~------------------------------P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-  211 (267)
T COG4167         163 ALILR------------------------------PKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-  211 (267)
T ss_pred             HHhcC------------------------------CcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-
Confidence            65555                              9999999999999999999999999999875 999999999976 


Q ss_pred             HHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        237 TLFQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       237 ~i~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      -+..++|+|++|++|++++.|.+.++..
T Consensus       212 ~iKHi~D~viVM~EG~vvE~G~t~~v~a  239 (267)
T COG4167         212 MIKHISDQVLVMHEGEVVERGSTADVLA  239 (267)
T ss_pred             HhhhhcccEEEEecCceeecCChhhhhc
Confidence            5788999999999999999999998864

>PLN03130 ABC transporter C family member; Provisional

Probab=99.97  E-value=3e-31  Score=327.47  Aligned_cols=207  Identities=22%  Similarity=0.350  Sum_probs=160.3

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCc-cEEEECCccCChhhh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT-GQILTNGHSRNINAF  106 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~-G~I~~~G~~~~~~~~  106 (606)
                      .|+++|++|+|+.+     .++++|+|+|+++++||.++|+||||||||||+++|.|..++ .+ |+|.+          
T Consensus       614 ~I~~~nvsf~y~~~-----~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~-~~GG~I~l----------  677 (1622)
T PLN03130        614 AISIKNGYFSWDSK-----AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP-RSDASVVI----------  677 (1622)
T ss_pred             ceEEEeeEEEccCC-----CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhcc-CCCceEEE----------
Confidence            69999999998531     235799999999999999999999999999999999999876 58 89974          


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcC----Cc--ccccCCCCCCCCchhh
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINN----PR--VMFLDEPTTSNPNDQK  180 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~----~~--~~~~de~~~~~s~g~~  180 (606)
                      ++.++||+|++.++.. |+.|.+.. |-         ..+..+-+++.-+.+|..+    |+  --..+|...+||||||
T Consensus       678 ~~~Iayv~Q~p~Lfng-TIreNI~f-g~---------~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQK  746 (1622)
T PLN03130        678 RGTVAYVPQVSWIFNA-TVRDNILF-GS---------PFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQK  746 (1622)
T ss_pred             cCeEEEEcCccccCCC-CHHHHHhC-CC---------cccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHH
Confidence            4579999999999875 66444332 21         1122233333333333221    11  1234556667888888


Q ss_pred             hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765        181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIK-LLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT  259 (606)
Q Consensus       181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~-~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~  259 (606)
                      ||++||||+.++|+|++||||||+||+.++..+.+ .++.+. +|+|+|++||+++  ..+.+|+|++|++|++++.|+.
T Consensus       747 QRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e~Gt~  823 (1622)
T PLN03130        747 QRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKEEGTY  823 (1622)
T ss_pred             HHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEEeCCH
Confidence            88888888888899999999999999999998864 565543 5899999999985  3578999999999999999999


Q ss_pred             hHHHH
Q psy13765        260 DQLVN  264 (606)
Q Consensus       260 ~~~~~  264 (606)
                      +++.+
T Consensus       824 ~eL~~  828 (1622)
T PLN03130        824 EELSN  828 (1622)
T ss_pred             HHHHh
Confidence            98864

>KOG0059|consensus

Probab=99.97  E-value=1.3e-31  Score=315.15  Aligned_cols=223  Identities=22%  Similarity=0.352  Sum_probs=173.6

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---  103 (606)
                      -.+..+|+++.++.      ..+ +++++|+.|++||+.+++|||||||||++|+|+|..++ .+|++.++|.+...   
T Consensus       563 ~~~~~~~L~k~y~~------~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~-t~G~a~i~g~~i~~~~~  634 (885)
T KOG0059|consen  563 SALVLNNLSKVYGG------KDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKP-TSGEALIKGHDITVSTD  634 (885)
T ss_pred             ceEEEcceeeeecc------hhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccC-CcceEEEecCccccccc
Confidence            35677888887642      112 99999999999999999999999999999999999877 59999999987532   


Q ss_pred             -hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhh
Q psy13765        104 -NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKK  181 (606)
Q Consensus       104 -~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~k  181 (606)
                       .+.++.+||+||+|.+++.+|.+|.++..+.       ++++...+-++.  +..++..-++. .+|.+++.+|||+||
T Consensus       635 ~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~ar-------lrG~~~~di~~~--v~~ll~~~~L~~~~~~~~~~ySgG~kR  705 (885)
T KOG0059|consen  635 FQQVRKQLGYCPQFDALWEELTGREHLEFYAR-------LRGLPRSDIGSA--IEKLLRLVGLGPYANKQVRTYSGGNKR  705 (885)
T ss_pred             hhhhhhhcccCCchhhhhhhccHHHHHHHHHH-------HcCCChhHHHHH--HHHHHHHcCChhhhccchhhCCCcchh
Confidence             3468899999999999999998776655431       122222221111  11122222221 445555556666666


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ  261 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~  261 (606)
                      |+++|.||+.+|++++|||||+|+||.+++.+.+++++++++|+.||+|||..+ +...+|||+.+|.+|++...|++++
T Consensus       706 kLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~aImv~G~l~ciGs~q~  784 (885)
T KOG0059|consen  706 RLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTAIMVIGQLRCIGSPQE  784 (885)
T ss_pred             hHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhheeecCeeEEecChHH
Confidence            666666666669999999999999999999999999999998889999999976 6889999999999999999999999


Q ss_pred             HHHHHH
Q psy13765        262 LVNYLS  267 (606)
Q Consensus       262 ~~~~f~  267 (606)
                      +...|.
T Consensus       785 LKsrfG  790 (885)
T KOG0059|consen  785 LKSRYG  790 (885)
T ss_pred             HHhhcC
Confidence            998764

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.97  E-value=6.5e-31  Score=324.42  Aligned_cols=207  Identities=23%  Similarity=0.347  Sum_probs=165.8

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhc
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR  107 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~  107 (606)
                      .++++|+++.++.      ..+++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|         
T Consensus       636 ~i~~~~~~~~~~~------~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~-~~G~i~~~g---------  699 (1522)
T TIGR00957       636 SITVHNATFTWAR------DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK-VEGHVHMKG---------  699 (1522)
T ss_pred             cEEEEEeEEEcCC------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcc-CCcEEEECC---------
Confidence            6999999999742      235799999999999999999999999999999999999876 599999987         


Q ss_pred             ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhc----CCc--ccccCCCCCCCCchhhh
Q psy13765        108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELIN----NPR--VMFLDEPTTSNPNDQKK  181 (606)
Q Consensus       108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~----~~~--~~~~de~~~~~s~g~~k  181 (606)
                       .++||+|++.+++ .|+.+.+.. |..         ....+.+++.-+.++..    .|+  --..+|....|||||||
T Consensus       700 -~i~yv~Q~~~l~~-~Ti~eNI~~-g~~---------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkq  767 (1522)
T TIGR00957       700 -SVAYVPQQAWIQN-DSLRENILF-GKA---------LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQ  767 (1522)
T ss_pred             -EEEEEcCCccccC-CcHHHHhhc-CCc---------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHH
Confidence             4899999998875 577665542 321         11122233333333322    121  12456778889999999


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMIS--QQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT  259 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~--~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~  259 (606)
                      |++||||++++|++++||||||+||+.++..+.+.+.+..  .+|+|+|++||+++. + ..+|++++|++|+++..|++
T Consensus       768 RiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~-l-~~~D~ii~l~~G~i~~~g~~  845 (1522)
T TIGR00957       768 RVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY-L-PQVDVIIVMSGGKISEMGSY  845 (1522)
T ss_pred             HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh-h-hhCCEEEEecCCeEEeeCCH
Confidence            9999999999999999999999999999999999987542  358999999999864 4 56999999999999999999


Q ss_pred             hHHHH
Q psy13765        260 DQLVN  264 (606)
Q Consensus       260 ~~~~~  264 (606)
                      +++.+
T Consensus       846 ~~l~~  850 (1522)
T TIGR00957       846 QELLQ  850 (1522)
T ss_pred             HHHHh
Confidence            88764

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK13409 putative ATPase RIL; Provisional

Probab=99.97  E-value=1.1e-31  Score=302.98  Aligned_cols=181  Identities=21%  Similarity=0.304  Sum_probs=130.3

Q ss_pred             cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEE-----------ECCccCCh--hh---hcccEEE
Q psy13765         49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQIL-----------TNGHSRNI--NA---FRRVSCY  112 (606)
Q Consensus        49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~-----------~~G~~~~~--~~---~~~~~~y  112 (606)
                      +.+|++++ .+++||+++|+||||||||||||+|+|..+| .+|+|.           ++|++...  ..   .+..+++
T Consensus        87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p-~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~  164 (590)
T PRK13409         87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIP-NLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVH  164 (590)
T ss_pred             ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccC-CCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceee
Confidence            46999999 9999999999999999999999999999877 489997           88876532  11   1233566


Q ss_pred             EccCCCCCCCC---cHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc-cccCCCCCCCCchhhhHHHHHHh
Q psy13765        113 IQQDDRLQPLL---TIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-MFLDEPTTSNPNDQKKRLSIALE  188 (606)
Q Consensus       113 v~Q~~~l~~~l---tv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~krl~IA~a  188 (606)
                      .+|.....|.+   ||.+.+...               -++.++.   +++..-++ ..+|.+...|||||||||+||+|
T Consensus       165 ~~q~~~~~p~~~~~tv~e~l~~~---------------~~~~~~~---~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~a  226 (590)
T PRK13409        165 KPQYVDLIPKVFKGKVRELLKKV---------------DERGKLD---EVVERLGLENILDRDISELSGGELQRVAIAAA  226 (590)
T ss_pred             cccchhhhhhhhcchHHHHHHhh---------------hHHHHHH---HHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence            66654443322   665443210               0122221   11111111 12455555555555555556666


Q ss_pred             hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCC
Q psy13765        189 LINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGG  251 (606)
Q Consensus       189 L~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G  251 (606)
                      |+.+|++|+|||||++||+.++..+.+.|+++++ |+|||+++|+++ .+..++|++++|.+|
T Consensus       227 l~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~~  287 (590)
T PRK13409        227 LLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYGE  287 (590)
T ss_pred             HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence            6666999999999999999999999999999988 999999999987 577899999999763

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.97  E-value=2.2e-30  Score=286.25  Aligned_cols=211  Identities=25%  Similarity=0.362  Sum_probs=158.7

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF  106 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~  106 (606)
                      ..|+++|+++.+        +.+.+++|+|+++.+|+.+||+|+||||||||||+|+|...+ .+|+|...+.       
T Consensus         2 ~~i~~~~ls~~~--------g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~-~~G~i~~~~~-------   65 (530)
T COG0488           2 SMITLENLSLAY--------GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP-DSGEVTRPKG-------   65 (530)
T ss_pred             ceEEEeeeEEee--------CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcC-CCCeEeecCC-------
Confidence            368899999987        568899999999999999999999999999999999999876 5899987541       


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHH-c-------------C--CccccCCccccCChHH--------HHHHHHHHHHhcC
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSL-L-------------G--LDESQNTRSSQLSGGQ--------KKRLSIALELINN  162 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~-~-------------g--l~~~~~~~~~~lSgGq--------rqRv~ia~~L~~~  162 (606)
                       -.++|++|++...+..||.+.+.. .             .  +.+........+..-+        ..|+..+..=+.-
T Consensus        66 -~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~  144 (530)
T COG0488          66 -LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGF  144 (530)
T ss_pred             -ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCC
Confidence             358999999999998887332211 0             0  0000000111111000        1222222222222


Q ss_pred             CcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q psy13765        163 PRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMF  242 (606)
Q Consensus       163 ~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~  242 (606)
                      ++.   |.|.+.||||||+||.+|+||..+|++|+|||||++||..+...+-+.|++.  +| |+|+|||| +..+-+.|
T Consensus       145 ~~~---~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~V~  217 (530)
T COG0488         145 PDE---DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDNVA  217 (530)
T ss_pred             Ccc---cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHHHh
Confidence            222   7899999999999999999999999999999999999999999999998743  46 99999999 55788999


Q ss_pred             ceeeeecCCcE-EEEcChhH
Q psy13765        243 DQVYLLSGGQC-LYQGATDQ  261 (606)
Q Consensus       243 D~v~~L~~G~~-~~~G~~~~  261 (606)
                      ++|+-++.|++ .|.|..+.
T Consensus       218 t~I~~ld~g~l~~y~Gny~~  237 (530)
T COG0488         218 THILELDRGKLTPYKGNYSS  237 (530)
T ss_pred             hheEEecCCceeEecCCHHH
Confidence            99999999987 46676544

>PLN03073 ABC transporter F family; Provisional

Probab=99.97  E-value=1e-30  Score=300.39  Aligned_cols=214  Identities=19%  Similarity=0.266  Sum_probs=145.3

Q ss_pred             CceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCccEEEECCccC-
Q psy13765         25 DRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS--NGVTGQILTNGHSR-  101 (606)
Q Consensus        25 ~~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~--~~~~G~I~~~G~~~-  101 (606)
                      ..-.|+++|++++|        +++.+|+|+|++|++|+.+||+|||||||||||++|+|...  .+.+|+|.+.++.. 
T Consensus       174 ~~~~I~i~nls~~y--------~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~  245 (718)
T PLN03073        174 AIKDIHMENFSISV--------GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVV  245 (718)
T ss_pred             CceeEEEceEEEEe--------CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCC
Confidence            34569999999997        23569999999999999999999999999999999999641  12468887644321 


Q ss_pred             ----Ch------------hhhcccEEEEccCCCCCCC-Cc-------------------HHHHHHHcCCccccCCccccC
Q psy13765        102 ----NI------------NAFRRVSCYIQQDDRLQPL-LT-------------------IENVMSLLGLDESQNTRSSQL  145 (606)
Q Consensus       102 ----~~------------~~~~~~~~yv~Q~~~l~~~-lt-------------------v~~~l~~~gl~~~~~~~~~~l  145 (606)
                          +.            ...++.+++++|++.+... .+                   ++++++.+++.+..+      
T Consensus       246 g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~------  319 (718)
T PLN03073        246 GDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYT------  319 (718)
T ss_pred             CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcch------
Confidence                11            0012335666665433211 00                   011111111110000      


Q ss_pred             ChHHHHHHHHHHHHhcCCcc--cccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy13765        146 SGGQKKRLSIALELINNPRV--MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ  223 (606)
Q Consensus       146 SgGqrqRv~ia~~L~~~~~~--~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~  223 (606)
                         -..|+.   +++..-.+  -.++.++..|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++   
T Consensus       320 ---~~~r~~---~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---  390 (718)
T PLN03073        320 ---AEARAA---SILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---  390 (718)
T ss_pred             ---HHHHHH---HHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---
Confidence               001111   12222111  1245566777777777777888888889999999999999999999999999876   


Q ss_pred             CCEEEEEecCCchHHHhhcceeeeecCCcEE-EEcChhHH
Q psy13765        224 GRTIICTIHQPSATLFQMFDQVYLLSGGQCL-YQGATDQL  262 (606)
Q Consensus       224 g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~-~~G~~~~~  262 (606)
                      +.|||+++|+.. .+...||++++|++|++. |.|+.++.
T Consensus       391 ~~tviivsHd~~-~l~~~~d~i~~l~~g~i~~~~g~~~~~  429 (718)
T PLN03073        391 PKTFIVVSHARE-FLNTVVTDILHLHGQKLVTYKGDYDTF  429 (718)
T ss_pred             CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence            689999999965 577889999999999996 77876543

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.97  E-value=1.4e-30  Score=236.75  Aligned_cols=190  Identities=21%  Similarity=0.344  Sum_probs=145.3

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCccEEEECCccCCh-h
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN--GVTGQILTNGHSRNI-N  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~--~~~G~I~~~G~~~~~-~  104 (606)
                      .+.++||+...        ++..+|.++|++|.+||++.||||||||||||+..+.|.+.+  ..+|++.+|++..+. .
T Consensus         2 ~l~l~nvsl~l--------~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lP   73 (213)
T COG4136           2 MLCLKNVSLRL--------PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP   73 (213)
T ss_pred             ceeeeeeeecC--------CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccc
Confidence            46788998654        456799999999999999999999999999999999998765  368999999987653 4


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHH
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRL  183 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl  183 (606)
                      ..+|++|.++||+.+||.++|.+.+-.        ..+..+-|-+|||.+=|  -+.+..+- ..|.-+..+|||||-|+
T Consensus        74 a~qRq~GiLFQD~lLFphlsVg~Nl~f--------Alp~~~KG~aRr~~a~a--AL~~~gL~g~f~~dP~tlSGGQrARv  143 (213)
T COG4136          74 AAQRQIGILFQDALLFPHLSVGQNLLF--------ALPATLKGNARRNAANA--ALERSGLDGAFHQDPATLSGGQRARV  143 (213)
T ss_pred             hhhhheeeeecccccccccccccceEE--------ecCcccccHHHHhhHHH--HHHHhccchhhhcChhhcCcchHHHH
Confidence            567899999999999999998543211        12334555556555422  11111111 34445566777777777


Q ss_pred             HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCCEEEEEecCCc
Q psy13765        184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK-MISQQGRTIICTIHQPS  235 (606)
Q Consensus       184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~-~l~~~g~tii~~~H~~~  235 (606)
                      ++-|+|+.+|+.++||||+|.||..-+.+..+.+- ++...|..+|.+|||..
T Consensus       144 aL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~  196 (213)
T COG4136         144 ALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ  196 (213)
T ss_pred             HHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence            78888888899999999999999999999988765 44556999999999965

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=9.8e-31  Score=246.66  Aligned_cols=170  Identities=24%  Similarity=0.424  Sum_probs=137.2

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh--hh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--NA  105 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--~~  105 (606)
                      .++.+||++.        +++..++.++||++.+||.+-|.|||||||||||++|+|+..| .+|+|.++|.+.+.  +.
T Consensus         2 ~L~a~~L~~~--------R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p-~~G~v~~~~~~i~~~~~~   72 (209)
T COG4133           2 MLEAENLSCE--------RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRP-DAGEVYWQGEPIQNVRES   72 (209)
T ss_pred             cchhhhhhhc--------cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCC-CCCeEEecCCCCccchhh
Confidence            3566777765        4677899999999999999999999999999999999999887 59999999987643  33


Q ss_pred             hcccEEEEccCCCCCCCCcHHHHHH-------------------HcCCccccCCccccCChHHHHHHHHHHHHhcCCccc
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIENVMS-------------------LLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM  166 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~~~l~-------------------~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~  166 (606)
                      +++.+-|+-.++.+-+.+|+.|.+.                   .+||....|.++++||-||||||+            
T Consensus        73 ~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvA------------  140 (209)
T COG4133          73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVA------------  140 (209)
T ss_pred             HHHHHHHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHH------------
Confidence            5677888888888888888755444                   445555555555555555555555            


Q ss_pred             ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q psy13765        167 FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSA  236 (606)
Q Consensus       167 ~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~  236 (606)
                                        |||-.++.+++.||||||++||......+-.++..-+++|-.||.+||||..
T Consensus       141 ------------------lArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~  192 (209)
T COG4133         141 ------------------LARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP  192 (209)
T ss_pred             ------------------HHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence                              5555555599999999999999999999999999888889999999999875

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.97  E-value=5.3e-30  Score=315.53  Aligned_cols=191  Identities=27%  Similarity=0.377  Sum_probs=153.6

Q ss_pred             cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHH
Q psy13765         49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENV  128 (606)
Q Consensus        49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~  128 (606)
                      +++|+|+|++|++||+++|+|||||||||||++|+|..++ .+|+|.++|          .++||+|++.+++. |+.+.
T Consensus       439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~-~~G~i~~~g----------~iayv~Q~~~l~~~-Ti~eN  506 (1490)
T TIGR01271       439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP-SEGKIKHSG----------RISFSPQTSWIMPG-TIKDN  506 (1490)
T ss_pred             CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECC----------EEEEEeCCCccCCc-cHHHH
Confidence            5699999999999999999999999999999999999876 599999988          38999999999885 88665


Q ss_pred             HHHcCCccccCCccccCChHHHHHHHHHHHHhc----CCc--ccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCC
Q psy13765        129 MSLLGLDESQNTRSSQLSGGQKKRLSIALELIN----NPR--VMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPT  202 (606)
Q Consensus       129 l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~----~~~--~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPT  202 (606)
                      +. +|...  +       .-..+++.-+.+|..    -|+  -...+|....||||||||++||||++.+|++++|||||
T Consensus       507 I~-~g~~~--~-------~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~  576 (1490)
T TIGR01271       507 II-FGLSY--D-------EYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF  576 (1490)
T ss_pred             HH-hcccc--c-------hHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            54 33211  1       111122222223221    121  12346677899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        203 TGLDSQSCSQCIKL-LKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       203 sgLD~~~~~~i~~~-l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      +|||+.++..+.+. ++++. +|+|+|++||++.. + ..||++++|++|+++..|+++++..
T Consensus       577 saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~-~-~~ad~ii~l~~g~i~~~g~~~~l~~  636 (1490)
T TIGR01271       577 THLDVVTEKEIFESCLCKLM-SNKTRILVTSKLEH-L-KKADKILLLHEGVCYFYGTFSELQA  636 (1490)
T ss_pred             ccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHH-H-HhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999999974 66664 48999999999874 4 5699999999999999999988763

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.97  E-value=5.6e-30  Score=256.80  Aligned_cols=194  Identities=24%  Similarity=0.373  Sum_probs=128.4

Q ss_pred             cccccceeeeEEEeCCeEEEEECCCCCCHHHHH-HHHhCCCCCCCccEEEEC-----------C--ccCChhhhc-ccEE
Q psy13765         47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-DVLSGYRSNGVTGQILTN-----------G--HSRNINAFR-RVSC  111 (606)
Q Consensus        47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL-~~L~g~~~~~~~G~I~~~-----------G--~~~~~~~~~-~~~~  111 (606)
                      ...++|+|||+++++||+++|+||||||||||+ ..+..      .|++.+.           |  ...+....+ ...+
T Consensus         6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (226)
T cd03270           6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPA   79 (226)
T ss_pred             chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH------HHHHHHhhcccchhhhhhcccCccccccccCCCce
Confidence            346799999999999999999999999999995 44431      2222110           0  000001111 1233


Q ss_pred             EEccCCC--CCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc--cccCCCCCCCCchhhhHHHHHH
Q psy13765        112 YIQQDDR--LQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV--MFLDEPTTSNPNDQKKRLSIAL  187 (606)
Q Consensus       112 yv~Q~~~--l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~--~~~de~~~~~s~g~~krl~IA~  187 (606)
                      +..|++.  +.+..++..+.+...+.....    . ....+++..    ++..-++  ..+|.++..+|+|||||+.||+
T Consensus        80 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~-~~~~~~~~~----~l~~~~l~~~~~~~~~~~LSgG~~qrv~lar  150 (226)
T cd03270          80 IAIDQKTTSRNPRSTVGTVTEIYDYLRLLF----A-RVGIRERLG----FLVDVGLGYLTLSRSAPTLSGGEAQRIRLAT  150 (226)
T ss_pred             EEecCCCCCCCCCccHHHHHHHHHHHHHHh----h-hhhHHHHHH----HHHHCCCCcccccCccCcCCHHHHHHHHHHH
Confidence            3344332  234445432211111100000    0 001122222    2222222  1367788889999999999999


Q ss_pred             hhhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeee------cCCcEEEEc
Q psy13765        188 ELINNP--RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL------SGGQCLYQG  257 (606)
Q Consensus       188 aL~~~P--~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~~~~~G  257 (606)
                      ||+.+|  ++++|||||+|||+.++..+.+.|++++++|.|+|++||+++ .+ +.||++++|      ++|+++++|
T Consensus       151 al~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g  226 (226)
T cd03270         151 QIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG  226 (226)
T ss_pred             HHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence            999998  599999999999999999999999999888999999999986 34 689999999      899999876

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PTZ00243 ABC transporter; Provisional

Probab=99.96  E-value=2.2e-29  Score=310.52  Aligned_cols=194  Identities=22%  Similarity=0.350  Sum_probs=149.0

Q ss_pred             cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHH
Q psy13765         47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIE  126 (606)
Q Consensus        47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~  126 (606)
                      +++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++          +.++||+|++.+++ .|+.
T Consensus       671 ~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~-~~G~i~~~----------~~i~yv~Q~~~l~~-~Tv~  738 (1560)
T PTZ00243        671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEI-SEGRVWAE----------RSIAYVPQQAWIMN-ATVR  738 (1560)
T ss_pred             CCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEEC----------CeEEEEeCCCccCC-CcHH
Confidence            346799999999999999999999999999999999999876 58999863          46999999998875 5886


Q ss_pred             HHHHHcCCccccCCccccCChHHHHHHHHHHHH---h-cCC--cccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeC
Q psy13765        127 NVMSLLGLDESQNTRSSQLSGGQKKRLSIALEL---I-NNP--RVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDE  200 (606)
Q Consensus       127 ~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L---~-~~~--~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDE  200 (606)
                      +.+.... .  .+.       ...+++.-+..|   + .-|  .--..++....||||||||++|||||+.+|++++|||
T Consensus       739 enI~~~~-~--~~~-------~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDE  808 (1560)
T PTZ00243        739 GNILFFD-E--EDA-------ARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDD  808 (1560)
T ss_pred             HHHHcCC-h--hhH-------HHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            6654321 0  000       000111111111   1 111  0113578888999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        201 PTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       201 PTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      ||++||+.++..+++.+.....+|+|+|++||+++. + ..+|++++|++|++++.|+.+++.+
T Consensus       809 P~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~-~-~~ad~ii~l~~G~i~~~G~~~~l~~  870 (1560)
T PTZ00243        809 PLSALDAHVGERVVEECFLGALAGKTRVLATHQVHV-V-PRADYVVALGDGRVEFSGSSADFMR  870 (1560)
T ss_pred             ccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEecCHHHHHh
Confidence            999999999999887543222358999999999863 4 7899999999999999999988753

>KOG0054|consensus

Probab=99.96  E-value=1.9e-28  Score=289.93  Aligned_cols=209  Identities=23%  Similarity=0.302  Sum_probs=165.3

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~  103 (606)
                      -.|+++|++.+|.+      +...+|||||++|+|||.+||+|..|||||||+++|-++..+ .+|+|.+||.++   ..
T Consensus      1137 G~I~f~~~~~RYrp------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~-~~G~I~IDgvdI~~igL 1209 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRP------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEP-AEGEILIDGVDISKIGL 1209 (1381)
T ss_pred             CeEEEEEeEEEeCC------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCc-cCCeEEEcCeecccccH
Confidence            47999999999853      346799999999999999999999999999999999999876 589999999865   45


Q ss_pred             hhhcccEEEEccCCCCCCCCc--------------HHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccC
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLT--------------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLD  169 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~lt--------------v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~d  169 (606)
                      .++|++++.+||||.+|...-              +.+.++..+|.+...+.+++|    -.               -..
T Consensus      1210 ~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~L----d~---------------~v~ 1270 (1381)
T KOG0054|consen 1210 HDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGL----DS---------------EVS 1270 (1381)
T ss_pred             HHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCC----Cc---------------eec
Confidence            789999999999999987521              245556555544333222211    00               122


Q ss_pred             CCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec
Q psy13765        170 EPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS  249 (606)
Q Consensus       170 e~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~  249 (606)
                      |-..+.|-||||.+.+||||+++.+||+|||+|++.|++|-..|.+.||+-= +++||+.+.|+.+. +. -+|||+||+
T Consensus      1271 egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T-Vm-d~DrVlVld 1347 (1381)
T KOG0054|consen 1271 EGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT-VM-DSDRVLVLD 1347 (1381)
T ss_pred             CCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch-hh-hcCeEEEee
Confidence            3344455555555556666666699999999999999999999999998643 37999999999985 54 499999999


Q ss_pred             CCcEEEEcChhHHHH
Q psy13765        250 GGQCLYQGATDQLVN  264 (606)
Q Consensus       250 ~G~~~~~G~~~~~~~  264 (606)
                      +|+++++|+|+++.+
T Consensus      1348 ~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1348 AGRVVEFDSPAELLS 1362 (1381)
T ss_pred             CCeEeecCChHHHHh
Confidence            999999999999875

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.96  E-value=5.6e-29  Score=244.39  Aligned_cols=165  Identities=22%  Similarity=0.294  Sum_probs=127.6

Q ss_pred             eeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC--------CccEEEECCccCChhhhcccEEEEccCCCCCC---
Q psy13765         53 KNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG--------VTGQILTNGHSRNINAFRRVSCYIQQDDRLQP---  121 (606)
Q Consensus        53 ~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~--------~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~---  121 (606)
                      +++++++++| +++|+||||||||||+++|+|+..+.        ..|++.++|+.......++.+++|+|++..+.   
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~   92 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSII   92 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEE
Confidence            7789999999 99999999999999999999875321        23568777775433334578999999987762   


Q ss_pred             -CCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeC
Q psy13765        122 -LLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDE  200 (606)
Q Consensus       122 -~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDE  200 (606)
                       ...++++++.   .+..++.+.+||||||||+++|++++..                          +..+|++++|||
T Consensus        93 ~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~--------------------------~~~~~~illlDE  143 (197)
T cd03278          93 SQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIF--------------------------RVRPSPFCVLDE  143 (197)
T ss_pred             ehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHh--------------------------ccCCCCEEEEeC
Confidence             1123455544   4556677778888888888877766520                          012379999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765        201 PTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG  250 (606)
Q Consensus       201 PTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~  250 (606)
                      ||+|||+.....+.+.|+++++ +.|||++||++. .+ +.+|+++.+..
T Consensus       144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~-~~-~~~d~v~~~~~  190 (197)
T cd03278         144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG-TM-EAADRLYGVTM  190 (197)
T ss_pred             CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH-HH-hhcceEEEEEe
Confidence            9999999999999999999865 689999999976 34 78999999963

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.96  E-value=1.6e-29  Score=235.20  Aligned_cols=198  Identities=27%  Similarity=0.491  Sum_probs=163.0

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~  104 (606)
                      .+.++|+...            +-|-.+|+++..||++-++|||||||||||-.++|+.+.  +|+|.++|.+..   ..
T Consensus         3 l~qln~v~~~------------tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~--sGsi~~~G~~l~~~~~~   68 (248)
T COG4138           3 LMQLNDVAES------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--SGSIQFAGQPLEAWSAT   68 (248)
T ss_pred             eeeecccccc------------ccccccccccccceEEEEECCCCccHHHHHHHHhCCCCC--CceEEECCcchhHHhHh
Confidence            4566777654            247889999999999999999999999999999999763  899999998764   35


Q ss_pred             hhcccEEEEccCCCCCCCCc-------------H----HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhc-CCccc
Q psy13765        105 AFRRVSCYIQQDDRLQPLLT-------------I----ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELIN-NPRVM  166 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~lt-------------v----~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~-~~~~~  166 (606)
                      ++.+.-+|+.|+..-...+.             +    +++...+++++...+.+.+|||||-|||-+|...+. .|++ 
T Consensus        69 eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~-  147 (248)
T COG4138          69 ELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDA-  147 (248)
T ss_pred             HHHHHHHHHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCC-
Confidence            66677788888754322222             2    667778899999999999999999999987654433 2221 


Q ss_pred             ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceee
Q psy13765        167 FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVY  246 (606)
Q Consensus       167 ~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~  246 (606)
                         +|.                    .++|++|||.++||......+-++|.+++++|.+||++.||.+.. .+.+|+++
T Consensus       148 ---NP~--------------------~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhT-LrhA~~~w  203 (248)
T COG4138         148 ---NPA--------------------GQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHT-LRHAHRAW  203 (248)
T ss_pred             ---Ccc--------------------ceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhH-HHHHHHHH
Confidence               111                    679999999999999999999999999999999999999999864 58999999


Q ss_pred             eecCCcEEEEcChhHHHH
Q psy13765        247 LLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       247 ~L~~G~~~~~G~~~~~~~  264 (606)
                      +|+.|++...|..+|++.
T Consensus       204 LL~rG~l~~~G~~~eVlt  221 (248)
T COG4138         204 LLKRGKLLASGRREEVLT  221 (248)
T ss_pred             HHhcCeEEeecchhhhcC
Confidence            999999999999998763

>KOG0054|consensus

Probab=99.95  E-value=1.6e-27  Score=282.15  Aligned_cols=210  Identities=24%  Similarity=0.382  Sum_probs=153.8

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhh
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA  105 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~  105 (606)
                      ...++++|.+++++..     +..+.|+|||++|++|+.+||+||-|||||+||.+|.|-.+. .+|+|.++|.      
T Consensus       516 ~~~i~i~~~sfsW~~~-----~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~-~sG~v~v~gs------  583 (1381)
T KOG0054|consen  516 ENAIEIKNGSFSWDSE-----SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK-LSGSVAVNGS------  583 (1381)
T ss_pred             CceEEEeeeeEecCCC-----CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc-ccceEEEcCe------
Confidence            4569999999997532     344589999999999999999999999999999999998765 6999999984      


Q ss_pred             hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCC------cccccCCCCCCCCchh
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNP------RVMFLDEPTTSNPNDQ  179 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~------~~~~~de~~~~~s~g~  179 (606)
                          ++||+|++-++...--||++-.-..++.+           =++|--|++|-.|-      |.-...|...+|||||
T Consensus       584 ----iaYv~Q~pWI~ngTvreNILFG~~~d~~r-----------Y~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQ  648 (1381)
T KOG0054|consen  584 ----VAYVPQQPWIQNGTVRENILFGSPYDEER-----------YDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQ  648 (1381)
T ss_pred             ----EEEeccccHhhCCcHHHhhhcCccccHHH-----------HHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhH
Confidence                89999999887753333433211111000           01122222222211      1112234444555555


Q ss_pred             hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765        180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT  259 (606)
Q Consensus       180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~  259 (606)
                      |||+++|||+-+|++|.+||.|.|++|++....+.+-.-+-.-+++|+|++|||.+  ..+.+|.|++|++|++...|+.
T Consensus       649 KqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~--~L~~ad~Iivl~~G~I~~~Gty  726 (1381)
T KOG0054|consen  649 KQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQ--FLPHADQIIVLKDGKIVESGTY  726 (1381)
T ss_pred             HHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchh--hhhhCCEEEEecCCeEecccCH
Confidence            55555666666669999999999999999999988665544446899999999865  4688999999999999999999


Q ss_pred             hHHHH
Q psy13765        260 DQLVN  264 (606)
Q Consensus       260 ~~~~~  264 (606)
                      +|+.+
T Consensus       727 ~el~~  731 (1381)
T KOG0054|consen  727 EELLK  731 (1381)
T ss_pred             HHHHh
Confidence            99883

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.95  E-value=2.3e-28  Score=225.09  Aligned_cols=121  Identities=42%  Similarity=0.712  Sum_probs=103.3

Q ss_pred             ceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---hhhcccEEEEccCCCCCCCCcH---
Q psy13765         52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---NAFRRVSCYIQQDDRLQPLLTI---  125 (606)
Q Consensus        52 L~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~~~yv~Q~~~l~~~ltv---  125 (606)
                      |+|||+++++||+++|+||||||||||+++|+|..++ .+|+|.+||.+...   ...++.++|++|++.+++.+|+   
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~-~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~   79 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP-DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN   79 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE-SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeecccccc-cccccccccccccccccccccccccccccccccccccccccc
Confidence            7899999999999999999999999999999999876 59999999987653   5567889999999999999976   


Q ss_pred             ------HHHHHHcCCccccCCcc----ccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcE
Q psy13765        126 ------ENVMSLLGLDESQNTRS----SQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRV  195 (606)
Q Consensus       126 ------~~~l~~~gl~~~~~~~~----~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~l  195 (606)
                            +++++.+++.+..++.+    ..||+|||||++||++|+.+                              |++
T Consensus        80 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~------------------------------~~l  129 (137)
T PF00005_consen   80 ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKN------------------------------PKL  129 (137)
T ss_dssp             HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTT------------------------------SSE
T ss_pred             cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcC------------------------------CCE
Confidence                  44666777766655555    78888888888876666666                              999


Q ss_pred             EEEeCCCC
Q psy13765        196 MFLDEPTT  203 (606)
Q Consensus       196 llLDEPTs  203 (606)
                      ++|||||+
T Consensus       130 lllDEPt~  137 (137)
T PF00005_consen  130 LLLDEPTN  137 (137)
T ss_dssp             EEEESTTT
T ss_pred             EEEeCCCC
Confidence            99999996

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.95  E-value=1.2e-27  Score=243.82  Aligned_cols=194  Identities=23%  Similarity=0.345  Sum_probs=133.6

Q ss_pred             cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHh-----C---CC--CCC----------CccEEEECCccCCh-----
Q psy13765         49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLS-----G---YR--SNG----------VTGQILTNGHSRNI-----  103 (606)
Q Consensus        49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~-----g---~~--~~~----------~~G~I~~~G~~~~~-----  103 (606)
                      ..-|+|||.+|+.|++++|.|+||||||||++.+.     .   ..  .+.          ..--|.++..++..     
T Consensus         8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~   87 (261)
T cd03271           8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN   87 (261)
T ss_pred             hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence            45699999999999999999999999999998552     1   10  010          11124454433210     


Q ss_pred             --------hhhcc----------------cEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHH
Q psy13765        104 --------NAFRR----------------VSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALEL  159 (606)
Q Consensus       104 --------~~~~~----------------~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L  159 (606)
                              +..|+                .+.|..++......+|+++.++.+.-.          . +.++    +.++
T Consensus        88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~----------~-~~~~----~~~~  152 (261)
T cd03271          88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENI----------P-KIAR----KLQT  152 (261)
T ss_pred             HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhh----------h-hHHH----HHHH
Confidence                    00010                123333444444455655554433110          0 1111    2223


Q ss_pred             hcCCccc--ccCCCCCCCCchhhhHHHHHHhhhcC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy13765        160 INNPRVM--FLDEPTTSNPNDQKKRLSIALELINN---PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQP  234 (606)
Q Consensus       160 ~~~~~~~--~~de~~~~~s~g~~krl~IA~aL~~~---P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~  234 (606)
                      +.+-.+-  .++++...+|||||||+.||++|+.+   |++++|||||+|||+.+...+.+.|++++++|.|||+++|++
T Consensus       153 L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~  232 (261)
T cd03271         153 LCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNL  232 (261)
T ss_pred             HHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3333332  36788888888888888888888886   799999999999999999999999999988899999999998


Q ss_pred             chHHHhhcceeeee------cCCcEEEEcCh
Q psy13765        235 SATLFQMFDQVYLL------SGGQCLYQGAT  259 (606)
Q Consensus       235 ~~~i~~~~D~v~~L------~~G~~~~~G~~  259 (606)
                      .. + +.+|+++.|      ++|++++.|++
T Consensus       233 ~~-i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~  261 (261)
T cd03271         233 DV-I-KCADWIIDLGPEGGDGGGQVVASGTP  261 (261)
T ss_pred             HH-H-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence            63 4 679999999      89999999974

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=2.4e-28  Score=226.41  Aligned_cols=208  Identities=21%  Similarity=0.284  Sum_probs=157.5

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCc--cC---
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH--SR---  101 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~--~~---  101 (606)
                      ..+.++|+++++.-.. ...-.-++++|+||+++.||++++=|||||||||||++|-|.+.+ .+|+|.+.-.  -.   
T Consensus         3 ~~l~v~~~~KtFtlH~-q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~-d~G~I~v~H~g~~vdl~   80 (235)
T COG4778           3 TPLNVSNVSKTFTLHQ-QGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLP-DEGQILVRHEGEWVDLV   80 (235)
T ss_pred             ceeeeecchhheEeee-cCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCC-CCceEEEEeCcchhhhh
Confidence            3578899988764321 011234799999999999999999999999999999999998776 5999998643  11   


Q ss_pred             --Ch----hhhcccEEEEccCCCCCCCCcHHHHHHH----cCCccccCCccccCChHHHHHHHHHHHHhcCCcc--cccC
Q psy13765        102 --NI----NAFRRVSCYIQQDDRLQPLLTIENVMSL----LGLDESQNTRSSQLSGGQKKRLSIALELINNPRV--MFLD  169 (606)
Q Consensus       102 --~~----~~~~~~~~yv~Q~~~l~~~ltv~~~l~~----~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~--~~~d  169 (606)
                        .+    .-.++.+|||.|--...|....-++...    .|...           -  .--.-|++|+++-++  -+++
T Consensus        81 ~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~-----------~--~a~~~a~~Ll~rLnlperLW~  147 (235)
T COG4778          81 TAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPR-----------E--VARAKAADLLTRLNLPERLWS  147 (235)
T ss_pred             ccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCH-----------H--HHHHHHHHHHHHcCCCHHHhc
Confidence              11    1224669999998777776553333222    22211           0  011235566666555  3677


Q ss_pred             CCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec
Q psy13765        170 EPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS  249 (606)
Q Consensus       170 e~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~  249 (606)
                      =+++..||||||||+|||.++.|-+||+|||||+.||..++..++++|++-+.+|..+|=+-|| ++.-...+||++-+.
T Consensus       148 LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD-eevre~vadR~~~~~  226 (235)
T COG4778         148 LAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD-EEVREAVADRLLDVS  226 (235)
T ss_pred             CCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeecc-HHHHHHHhhheeecc
Confidence            7888899999999999999999999999999999999999999999999998899999999999 434557899998886


Q ss_pred             C
Q psy13765        250 G  250 (606)
Q Consensus       250 ~  250 (606)
                      .
T Consensus       227 ~  227 (235)
T COG4778         227 A  227 (235)
T ss_pred             c
Confidence            3

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.95  E-value=6.1e-27  Score=258.97  Aligned_cols=206  Identities=24%  Similarity=0.324  Sum_probs=153.9

Q ss_pred             CceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChh
Q psy13765         25 DRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNIN  104 (606)
Q Consensus        25 ~~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~  104 (606)
                      ....++++|+++.|.       +.+.+++++|+.|.+|+.+||+||||+|||||||+|+|...+ .+|+|.+.-      
T Consensus       318 g~~vl~~~~~~~~y~-------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~-~~G~v~~g~------  383 (530)
T COG0488         318 GKLVLEFENVSKGYD-------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP-LSGTVKVGE------  383 (530)
T ss_pred             CCeeEEEeccccccC-------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhccc-CCceEEeCC------
Confidence            356799999999973       236899999999999999999999999999999999998776 489998743      


Q ss_pred             hhcccEEEEccCC-CCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH
Q psy13765        105 AFRRVSCYIQQDD-RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL  183 (606)
Q Consensus       105 ~~~~~~~yv~Q~~-~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl  183 (606)
                        .-.+||..|+. .+.+..|+.+.+....-+..          -+.=|-.+++-+....+   ...|+..||||||.||
T Consensus       384 --~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~----------e~~~r~~L~~f~F~~~~---~~~~v~~LSGGEk~Rl  448 (530)
T COG0488         384 --TVKIGYFDQHRDELDPDKTVLEELSEGFPDGD----------EQEVRAYLGRFGFTGED---QEKPVGVLSGGEKARL  448 (530)
T ss_pred             --ceEEEEEEehhhhcCccCcHHHHHHhhCcccc----------HHHHHHHHHHcCCChHH---HhCchhhcCHhHHHHH
Confidence              13589999987 44466677665544221100          11112222333322222   1456667777777777


Q ss_pred             HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEE-cChhHH
Q psy13765        184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ-GATDQL  262 (606)
Q Consensus       184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~-G~~~~~  262 (606)
                      .+|..++.+|.+|+|||||+.||..+...+.+.|.+.   .-|||+||||.. .+-+.+++++.+.+ ++..+ |..++.
T Consensus       449 ~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~-Fl~~va~~i~~~~~-~~~~~~g~y~~y  523 (530)
T COG0488         449 LLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRY-FLDRVATRIWLVED-KVEEFEGGYEDY  523 (530)
T ss_pred             HHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcceEEEEcC-ceeEcCCCHHHH
Confidence            7888888889999999999999999999999998765   459999999965 68899999999998 55444 776654


Q ss_pred             HH
Q psy13765        263 VN  264 (606)
Q Consensus       263 ~~  264 (606)
                      .+
T Consensus       524 ~~  525 (530)
T COG0488         524 LE  525 (530)
T ss_pred             HH
Confidence            43

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.95  E-value=4.7e-27  Score=233.52  Aligned_cols=192  Identities=17%  Similarity=0.139  Sum_probs=132.9

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEe-CCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECC--ccCChh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFP-SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG--HSRNIN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~-~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G--~~~~~~  104 (606)
                      .|+++|+. +|        .+.   ++++|... +|++++|+||||||||||+++|++.+.....+....+.  ......
T Consensus         5 ~i~l~nf~-~y--------~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~   72 (213)
T cd03279           5 KLELKNFG-PF--------REE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPG   72 (213)
T ss_pred             EEEEECCc-Cc--------CCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCC
Confidence            57777775 32        111   66666544 58999999999999999999999643211223333221  111222


Q ss_pred             hhcccEEEEccCCCC------CCCCcHHHHHH-----HcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCC
Q psy13765        105 AFRRVSCYIQQDDRL------QPLLTIENVMS-----LLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT  173 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l------~~~ltv~~~l~-----~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~  173 (606)
                      ..+..+++++|++..      .+.++.++..+     ..++.+..++.+..+|+|||||+++|++|+.+|.+...++   
T Consensus        73 ~~~~~v~~~f~~~~~~~~~~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~---  149 (213)
T cd03279          73 EDTAEVSFTFQLGGKKYRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGG---  149 (213)
T ss_pred             CccEEEEEEEEECCeEEEEEEecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccC---
Confidence            335668899988744      22344444332     2345566677777788888888887777765432111111   


Q ss_pred             CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765        174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ  252 (606)
Q Consensus       174 ~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~  252 (606)
                                       .+|++++|||||+|||+.+...+.+.|++++++|.|+|++||+++ .+...+|+++++++|.
T Consensus       150 -----------------~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~  210 (213)
T cd03279         150 -----------------ARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG  210 (213)
T ss_pred             -----------------CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence                             138999999999999999999999999999877999999999986 5678899999999874

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.94  E-value=1.5e-26  Score=234.04  Aligned_cols=184  Identities=21%  Similarity=0.314  Sum_probs=124.7

Q ss_pred             cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCC----------------CCCCCcc--------EEEECCcc--
Q psy13765         47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY----------------RSNGVTG--------QILTNGHS--  100 (606)
Q Consensus        47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~----------------~~~~~~G--------~I~~~G~~--  100 (606)
                      +++.++++++     |++++|+||||||||||+++|++.                ..++ +|        +|.+++.+  
T Consensus        13 ~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~-~~~~~~~~~v~i~~~~~~~~   86 (243)
T cd03272          13 KDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEG-SGPSVMSAYVEIIFDNSDNR   86 (243)
T ss_pred             ccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCC-CCCCCceEEEEEEEEcCCCc
Confidence            4566888886     789999999999999999999832                2221 34        55555531  


Q ss_pred             --C--ChhhhcccEEEEccCCCCCC-CCcHHHHHHH---cCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCC
Q psy13765        101 --R--NINAFRRVSCYIQQDDRLQP-LLTIENVMSL---LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPT  172 (606)
Q Consensus       101 --~--~~~~~~~~~~yv~Q~~~l~~-~ltv~~~l~~---~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~  172 (606)
                        .  .....++.+++++|+..+++ ..|.+++...   +|+.....  ...+..|+.  ..+ ..+   .  -..+++.
T Consensus        87 ~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~--~~~~~qg~i--~~l-~~l---~--~~~~~~~  156 (243)
T cd03272          87 FPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNP--YYIVPQGKI--NSL-TNM---K--QDEQQEM  156 (243)
T ss_pred             cCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCC--cEEEEcCch--HHh-hhc---c--ccccccc
Confidence              1  11235677899999887776 3576665444   44432110  000111111  010 011   0  0235566


Q ss_pred             CCCCchhhhHHHHHHhhh----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeee
Q psy13765        173 TSNPNDQKKRLSIALELI----NNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL  248 (606)
Q Consensus       173 ~~~s~g~~krl~IA~aL~----~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L  248 (606)
                      ..+|+|||||+.||+||+    .+|+++++||||+|||+.++..+.+.|+++++ +.|||+++|++  ++.+.||++++|
T Consensus       157 ~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l  233 (243)
T cd03272         157 QQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGV  233 (243)
T ss_pred             cccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEE
Confidence            677777777777888875    35899999999999999999999999999865 78888888884  367999999999


Q ss_pred             c
Q psy13765        249 S  249 (606)
Q Consensus       249 ~  249 (606)
                      .
T Consensus       234 ~  234 (243)
T cd03272         234 K  234 (243)
T ss_pred             E
Confidence            5

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.94  E-value=1.2e-25  Score=243.51  Aligned_cols=217  Identities=20%  Similarity=0.383  Sum_probs=171.2

Q ss_pred             CceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-
Q psy13765         25 DRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-  103 (606)
Q Consensus        25 ~~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-  103 (606)
                      ....++++|++..            ..++|+||++++||+++|-|-=|||+|-|+++|.|..+. .+|+|.+||++... 
T Consensus       260 ~~~~l~v~~l~~~------------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~-~~G~i~l~G~~v~~~  326 (500)
T COG1129         260 GEPVLEVRNLSGG------------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPA-SSGEILLDGKPVRIR  326 (500)
T ss_pred             CCcEEEEecCCCC------------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcC-CCceEEECCEEccCC
Confidence            3456888888742            258999999999999999999999999999999997655 59999999987542 


Q ss_pred             ---hhhcccEEEEccC---CCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc--ccCCCCCCC
Q psy13765        104 ---NAFRRVSCYIQQD---DRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM--FLDEPTTSN  175 (606)
Q Consensus       104 ---~~~~~~~~yv~Q~---~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~--~~de~~~~~  175 (606)
                         +..+..++|||.|   +-++..+++.+.+....+.......  -++....+  ..+.....+-++-  =.+.|...|
T Consensus       327 sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~--~i~~~~e~--~~~~~~~~~l~Ik~~s~~~~v~~L  402 (500)
T COG1129         327 SPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRG--LIDRRKER--ALAERYIRRLRIKTPSPEQPIGTL  402 (500)
T ss_pred             CHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhcccc--ccChHHHH--HHHHHHHHhcCcccCCccchhhcC
Confidence               3566789999976   4577777876655443333322211  23333222  2334444443332  347899999


Q ss_pred             CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765        176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY  255 (606)
Q Consensus       176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~  255 (606)
                      |||.||+|.||+.|.++|++|||||||.|.|.-+..+|.+++++++++|++||++|.+.. ++..+||||++|++|+++.
T Consensus       403 SGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~Gri~~  481 (500)
T COG1129         403 SGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMREGRIVG  481 (500)
T ss_pred             CchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEECCEEEE
Confidence            999999999999999999999999999999999999999999999999999999999976 6889999999999999987


Q ss_pred             EcCh
Q psy13765        256 QGAT  259 (606)
Q Consensus       256 ~G~~  259 (606)
                      .=+.
T Consensus       482 e~~~  485 (500)
T COG1129         482 ELDR  485 (500)
T ss_pred             Eecc
Confidence            5443

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.94  E-value=9.9e-27  Score=239.73  Aligned_cols=192  Identities=24%  Similarity=0.377  Sum_probs=151.5

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---h
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---I  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~  103 (606)
                      -+|+++|+.|.|+.+       .-=+..||++|++||++-|+|.||||||||++.|+|+..| .+|+|.+||++++   .
T Consensus       321 ~~lelrnvrfay~~~-------~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~P-qsG~I~ldg~pV~~e~l  392 (546)
T COG4615         321 KTLELRNVRFAYQDN-------AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQP-QSGEILLDGKPVSAEQL  392 (546)
T ss_pred             cceeeeeeeeccCcc-------cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCC-CCCceeECCccCCCCCH
Confidence            369999999998542       2458899999999999999999999999999999999887 5999999999875   3


Q ss_pred             hhhcccEEEEccCCCCCCCCc----------HHHHHHHcCCcccc---CCcc--ccCChHHHHHHHHHHHHhcCCccccc
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLT----------IENVMSLLGLDESQ---NTRS--SQLSGGQKKRLSIALELINNPRVMFL  168 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~lt----------v~~~l~~~gl~~~~---~~~~--~~lSgGqrqRv~ia~~L~~~~~~~~~  168 (606)
                      +++|+..+-|+-|-++|+.+-          ++..++.+.+.+..   |...  -.||.|||||++.-.||+        
T Consensus       393 edYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~All--------  464 (546)
T COG4615         393 EDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALL--------  464 (546)
T ss_pred             HHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHH--------
Confidence            678888888888888877542          34455555554432   2221  135666666666555544        


Q ss_pred             CCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCCEEEEEecCCchHHHhhcceeee
Q psy13765        169 DEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK-MISQQGRTIICTIHQPSATLFQMFDQVYL  247 (606)
Q Consensus       169 de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~-~l~~~g~tii~~~H~~~~~i~~~~D~v~~  247 (606)
                                            .+-+|+++||=.+.-||.-++.+.+.+- .++++|+||+.+|||..  -+..+||++.
T Consensus       465 ----------------------EeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~--YF~~ADrll~  520 (546)
T COG4615         465 ----------------------EERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH--YFIHADRLLE  520 (546)
T ss_pred             ----------------------hhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch--hhhhHHHHHH
Confidence                                  4599999999999999999999887655 56678999999999944  5889999999


Q ss_pred             ecCCcEEEEcC
Q psy13765        248 LSGGQCLYQGA  258 (606)
Q Consensus       248 L~~G~~~~~G~  258 (606)
                      +++|++++.-+
T Consensus       521 ~~~G~~~e~tg  531 (546)
T COG4615         521 MRNGQLSELTG  531 (546)
T ss_pred             HhcCceeeccc
Confidence            99999987653

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.93  E-value=1.2e-25  Score=222.09  Aligned_cols=170  Identities=22%  Similarity=0.263  Sum_probs=115.8

Q ss_pred             eeeEEEeCCeEEEEECCCCCCHHHHHHHHh----CCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCC------
Q psy13765         54 NLCGRFPSNQLIAIMGPSGAGKSSLLDVLS----GYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLL------  123 (606)
Q Consensus        54 ~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~----g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~l------  123 (606)
                      ..++++.+| +++|+|||||||||||++|.    |..++. .|.+..+.........+..+++++|++. ....      
T Consensus        15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~-~~~~~~~~~~i~~~~~~~~v~~~f~~~~-~~~~~v~r~~   91 (204)
T cd03240          15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN-SKGGAHDPKLIREGEVRAQVKLAFENAN-GKKYTITRSL   91 (204)
T ss_pred             ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc-cccccchHHHHhCCCCcEEEEEEEEeCC-CCEEEEEEEh
Confidence            345667788 99999999999999999995    876553 5555422222222334567999999873 2222      


Q ss_pred             cHHHHHHHc---CCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeC
Q psy13765        124 TIENVMSLL---GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDE  200 (606)
Q Consensus       124 tv~~~l~~~---gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDE  200 (606)
                      |+.+-+...   ......++.++.||+||+||+.+|.                        |++||++++.+|+++++||
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~------------------------rlala~al~~~p~illlDE  147 (204)
T cd03240          92 AILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLII------------------------RLALAETFGSNCGILALDE  147 (204)
T ss_pred             hHhhceeeechHHHHHHHhcCccccCccHHHHHHHHH------------------------HHHHHHHhccCCCEEEEcC
Confidence            221111000   0011113334444444444443332                        3578899999999999999


Q ss_pred             CCCCCCHHHHH-HHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeec-CCc
Q psy13765        201 PTTGLDSQSCS-QCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLS-GGQ  252 (606)
Q Consensus       201 PTsgLD~~~~~-~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~-~G~  252 (606)
                      ||++||+.++. .+.+.|++++++ |.|||+++|++.  ....||+++.|. +|+
T Consensus       148 P~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~~~~  200 (204)
T cd03240         148 PTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEKDGR  200 (204)
T ss_pred             CccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEeeCCC
Confidence            99999999999 999999999876 899999999965  346899999995 453

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.93  E-value=5.4e-26  Score=225.74  Aligned_cols=153  Identities=18%  Similarity=0.236  Sum_probs=107.0

Q ss_pred             cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh-cccEEEEccCCCCCCCCcH
Q psy13765         47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF-RRVSCYIQQDDRLQPLLTI  125 (606)
Q Consensus        47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~~~l~~~ltv  125 (606)
                      +++.+++++++     ++++|+||||||||||+++|.-.           +|.+.  ... ++.+++++|+..+++.+|+
T Consensus        15 ~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~-----------~G~~~--~~~~~~~i~~~~~~~~~~~~~~~   76 (212)
T cd03274          15 AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV-----------FGFRA--SKMRQKKLSDLIHNSAGHPNLDS   76 (212)
T ss_pred             CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH-----------hccCH--HHhhhhhHHHHhcCCCCCCCCce
Confidence            45678999987     89999999999999999999721           22211  111 2346666666666665554


Q ss_pred             HHH--------------------------------HHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCC
Q psy13765        126 ENV--------------------------------MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT  173 (606)
Q Consensus       126 ~~~--------------------------------l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~  173 (606)
                      .++                                ++.+++.+..++++                              .
T Consensus        77 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~------------------------------~  126 (212)
T cd03274          77 CSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI------------------------------S  126 (212)
T ss_pred             EEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch------------------------------h
Confidence            222                                12223333333333                              4


Q ss_pred             CCCchhhhHHHHHHhhhc----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec
Q psy13765        174 SNPNDQKKRLSIALELIN----NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS  249 (606)
Q Consensus       174 ~~s~g~~krl~IA~aL~~----~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~  249 (606)
                      .+|+|||||+.||+|++.    +|+++++||||+|||+.+...+.+.++++++ +.|+|+++|++  ++.+.||++++|.
T Consensus       127 ~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~  203 (212)
T cd03274         127 NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIY  203 (212)
T ss_pred             hcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEE
Confidence            455555555556666542    3899999999999999999999999999864 67888888995  4679999999996


Q ss_pred             C
Q psy13765        250 G  250 (606)
Q Consensus       250 ~  250 (606)
                      .
T Consensus       204 ~  204 (212)
T cd03274         204 K  204 (212)
T ss_pred             e
Confidence            4

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.92  E-value=5.7e-25  Score=223.95  Aligned_cols=181  Identities=18%  Similarity=0.209  Sum_probs=120.5

Q ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCc-cC-Ch----hhhcccEEEEccCCC---------CCCCCcHH
Q psy13765         62 NQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH-SR-NI----NAFRRVSCYIQQDDR---------LQPLLTIE  126 (606)
Q Consensus        62 Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~-~~-~~----~~~~~~~~yv~Q~~~---------l~~~ltv~  126 (606)
                      ..+++|+||||||||||+++|++.+.+...|++...|. +. ..    ...+..+++++|++.         +.|.+||.
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~  104 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT  104 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence            44999999999999999999999876533567877765 21 10    122457899999852         33455553


Q ss_pred             HHHHHcCCccccCCccccCChHHHHHHHHHHHHhc-C---Cc--------------ccccCCCCCCCCchhhhHHHHHHh
Q psy13765        127 NVMSLLGLDESQNTRSSQLSGGQKKRLSIALELIN-N---PR--------------VMFLDEPTTSNPNDQKKRLSIALE  188 (606)
Q Consensus       127 ~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~-~---~~--------------~~~~de~~~~~s~g~~krl~IA~a  188 (606)
                      +.+.. +....  ....+ ..-.++++.-+.+.+. .   +.              .-..+++...+|+|||||++||++
T Consensus       105 r~I~~-~~~~~--~~in~-~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~a  180 (251)
T cd03273         105 RQIVL-GGTNK--YLING-HRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLI  180 (251)
T ss_pred             EEEEc-CCceE--EEECC-EEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHH
Confidence            32211 11100  00000 0001122221111111 0   00              013456778899999999999998


Q ss_pred             hh----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec
Q psy13765        189 LI----NNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS  249 (606)
Q Consensus       189 L~----~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~  249 (606)
                      |+    .+|+++++||||+|||+.+...+.+.|++++ +|.|+|++||++  ++.+.||+++-+.
T Consensus       181 l~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~  242 (251)
T cd03273         181 LALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR  242 (251)
T ss_pred             HHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence            87    5789999999999999999999999999985 489999999994  4678899998875

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0062|consensus

Probab=99.91  E-value=2.9e-24  Score=228.38  Aligned_cols=141  Identities=23%  Similarity=0.372  Sum_probs=98.8

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCccEEEECCccCCh
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN--GVTGQILTNGHSRNI  103 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~--~~~G~I~~~G~~~~~  103 (606)
                      ...|...|.+..|        +.|.+|++-++++..|..++|+|+||+||||||++|+.-.-.  +++-++.=+..+...
T Consensus        78 ~~Di~~~~fdLa~--------G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~  149 (582)
T KOG0062|consen   78 SKDIHIDNFDLAY--------GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQ  149 (582)
T ss_pred             ccceeeeeeeeee--------cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHh
Confidence            4567777887776        578899999999999999999999999999999999872100  122222211111000


Q ss_pred             hhh---cccEEEEccCCCCCCCCcHHH----HHHHcCCccc-cCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCC
Q psy13765        104 NAF---RRVSCYIQQDDRLQPLLTIEN----VMSLLGLDES-QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS  174 (606)
Q Consensus       104 ~~~---~~~~~yv~Q~~~l~~~ltv~~----~l~~~gl~~~-~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~  174 (606)
                      +..   -...-++.++..+...++.++    +|..+|..+. ....++++|||=|-|+++||||..+||+++|||||..
T Consensus       150 ~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNh  228 (582)
T KOG0062|consen  150 SVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNH  228 (582)
T ss_pred             hhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCccc
Confidence            000   011234555555555445544    4556777653 4556788999999999999999999999999999988

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.91  E-value=1.1e-23  Score=246.15  Aligned_cols=96  Identities=25%  Similarity=0.463  Sum_probs=88.8

Q ss_pred             ccCCCCCCCCchhhhHHHHHHhhhcCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcc
Q psy13765        167 FLDEPTTSNPNDQKKRLSIALELINNP---RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFD  243 (606)
Q Consensus       167 ~~de~~~~~s~g~~krl~IA~aL~~~P---~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D  243 (606)
                      .++++...||||||||+.||++|+.+|   ++++|||||+|||+.+...+++.|++++++|.|||+++|++.. + +.+|
T Consensus       823 ~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~-i-~~aD  900 (943)
T PRK00349        823 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDV-I-KTAD  900 (943)
T ss_pred             cccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-HhCC
Confidence            468899999999999999999999999   9999999999999999999999999998889999999999863 4 6899


Q ss_pred             eeeee------cCCcEEEEcChhHHHH
Q psy13765        244 QVYLL------SGGQCLYQGATDQLVN  264 (606)
Q Consensus       244 ~v~~L------~~G~~~~~G~~~~~~~  264 (606)
                      +++.|      ++|++++.|+++++..
T Consensus       901 ~ii~Lgp~~G~~~G~Iv~~Gt~~el~~  927 (943)
T PRK00349        901 WIIDLGPEGGDGGGEIVATGTPEEVAK  927 (943)
T ss_pred             EEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence            99999      6899999999998754

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.91  E-value=1.5e-23  Score=231.15  Aligned_cols=175  Identities=28%  Similarity=0.424  Sum_probs=135.8

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhh
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA  105 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~  105 (606)
                      ...|+++||+...|       +++..|++.++.+++||-+.|.||||||||||+|+|+|+.+.+ +|+|..-.       
T Consensus       390 ~~~i~~~nl~l~~p-------~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g-~G~I~~P~-------  454 (604)
T COG4178         390 DHGITLENLSLRTP-------DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG-SGRISMPA-------  454 (604)
T ss_pred             cceeEEeeeeEECC-------CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC-CCceecCC-------
Confidence            46799999999864       3358999999999999999999999999999999999998764 78876531       


Q ss_pred             hcccEEEEccCCCCCCC-----------------CcHHHHHHHcCCccccCCcc------ccCChHHHHHHHHHHHHhcC
Q psy13765        106 FRRVSCYIQQDDRLQPL-----------------LTIENVMSLLGLDESQNTRS------SQLSGGQKKRLSIALELINN  162 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~-----------------ltv~~~l~~~gl~~~~~~~~------~~lSgGqrqRv~ia~~L~~~  162 (606)
                       ...+-|+||.|.+...                 ..+.++|.++||.+..++.-      ..||+|||||++.||.|+++
T Consensus       455 -~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~k  533 (604)
T COG4178         455 -DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHK  533 (604)
T ss_pred             -CCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcC
Confidence             1236677777765433                 22466777888877554421      23777777777766665555


Q ss_pred             CcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q psy13765        163 PRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMF  242 (606)
Q Consensus       163 ~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~  242 (606)
                                                    |++++|||.|++||+.+...+.+.+++-. .+.|||-+.|++.  +..+.
T Consensus       534 ------------------------------P~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h  580 (604)
T COG4178         534 ------------------------------PKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFH  580 (604)
T ss_pred             ------------------------------CCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHH
Confidence                                          99999999999999999999999997532 3799999999976  45777


Q ss_pred             ceeeeec
Q psy13765        243 DQVYLLS  249 (606)
Q Consensus       243 D~v~~L~  249 (606)
                      ++.+-+.
T Consensus       581 ~~~l~l~  587 (604)
T COG4178         581 SRQLELL  587 (604)
T ss_pred             hhheeec
Confidence            7776664

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.90  E-value=3.8e-23  Score=251.09  Aligned_cols=95  Identities=32%  Similarity=0.531  Sum_probs=88.5

Q ss_pred             cCCCCCCCCchhhhHHHHHHhhh---cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcce
Q psy13765        168 LDEPTTSNPNDQKKRLSIALELI---NNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQ  244 (606)
Q Consensus       168 ~de~~~~~s~g~~krl~IA~aL~---~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~  244 (606)
                      +|++...||||||||+.||++|+   .+|++++|||||+|||+.+...++++|++++++|.|||+++|++. .+ +.+|+
T Consensus       803 l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDr  880 (1809)
T PRK00635        803 LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADY  880 (1809)
T ss_pred             hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCE
Confidence            68999999999999999999998   699999999999999999999999999999988999999999986 45 89999


Q ss_pred             eeeec------CCcEEEEcChhHHHH
Q psy13765        245 VYLLS------GGQCLYQGATDQLVN  264 (606)
Q Consensus       245 v~~L~------~G~~~~~G~~~~~~~  264 (606)
                      +++|.      +|+++..|+++++..
T Consensus       881 Vi~L~p~gg~~~G~iv~~Gtpeel~~  906 (1809)
T PRK00635        881 VLELGPEGGNLGGYLLASCSPEELIH  906 (1809)
T ss_pred             EEEEccCCCCCCCEEEEeCCHHHHHh
Confidence            99996      789999999988753

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.90  E-value=1.7e-23  Score=216.82  Aligned_cols=172  Identities=26%  Similarity=0.400  Sum_probs=145.1

Q ss_pred             CCCCceEEEEEeeEEEEecCCccc---ccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECC
Q psy13765         22 ETADRIEIKFKDLTYTVSTGLGFK---QEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG   98 (606)
Q Consensus        22 ~~~~~~~l~~~nl~~~~~~~~~~~---~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G   98 (606)
                      +...++-++.+||.+.++.+.++-   .....++++||+++++||.++|+|.||||||||-.+|.++.++  +|+|.++|
T Consensus       270 ~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s--~G~I~F~G  347 (534)
T COG4172         270 PEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS--QGEIRFDG  347 (534)
T ss_pred             CCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc--CceEEECC
Confidence            334567899999999998764432   2345789999999999999999999999999999999999875  69999999


Q ss_pred             ccCCh------hhhcccEEEEccCC--CCCCCCcHH------------------------HHHHHcCCcc-ccCCccccC
Q psy13765         99 HSRNI------NAFRRVSCYIQQDD--RLQPLLTIE------------------------NVMSLLGLDE-SQNTRSSQL  145 (606)
Q Consensus        99 ~~~~~------~~~~~~~~yv~Q~~--~l~~~ltv~------------------------~~l~~~gl~~-~~~~~~~~l  145 (606)
                      ++++.      .-+|+.+-.|||||  .+.|.+||.                        +.++..||+. ..++.++++
T Consensus       348 ~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEF  427 (534)
T COG4172         348 QDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEF  427 (534)
T ss_pred             ccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCccc
Confidence            87642      33578899999998  477888873                        4456678875 678889999


Q ss_pred             ChHHHHHHHHHHHHhcCCcccccCCCCCCCCch-hhhHHHHHHhhhcCCcE
Q psy13765        146 SGGQKKRLSIALELINNPRVMFLDEPTTSNPND-QKKRLSIALELINNPRV  195 (606)
Q Consensus       146 SgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g-~~krl~IA~aL~~~P~l  195 (606)
                      |||||||++||||++.+|.++++||||+.|+.. |+|-+.+-+.|-.+-.+
T Consensus       428 SGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~L  478 (534)
T COG4172         428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGL  478 (534)
T ss_pred             CcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999986 88899999999877654

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.90  E-value=1.2e-22  Score=216.24  Aligned_cols=225  Identities=21%  Similarity=0.334  Sum_probs=177.5

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC----
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR----  101 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~----  101 (606)
                      ...++++||+..-.       .+...+++|||++++||+++|.|-.|-|-+.|+.+|+|+.++. +|+|.++|++.    
T Consensus       255 ~~vL~V~~L~v~~~-------~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~-~G~I~l~G~~v~~~~  326 (501)
T COG3845         255 EVVLEVEDLSVKDR-------RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA-SGRILLNGKDVLGRL  326 (501)
T ss_pred             CeEEEEeeeEeecC-------CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC-CceEEECCEeccccC
Confidence            56899999998632       2246899999999999999999999999999999999998664 69999999885    


Q ss_pred             Chhhh-cccEEEEccCCC---CCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc--ccCCCCCCC
Q psy13765        102 NINAF-RRVSCYIQQDDR---LQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM--FLDEPTTSN  175 (606)
Q Consensus       102 ~~~~~-~~~~~yv~Q~~~---l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~--~~de~~~~~  175 (606)
                      +..+. +..++|||.|.+   +-+.+++.+.+-.-......-.+-+-+.-.+-+  ..|..++.+-|+.  =-+.|..+|
T Consensus       327 ~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~--~~a~~li~~fdVr~~~~~~~a~~L  404 (501)
T COG3845         327 SPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIR--KFARELIEEFDVRAPSPDAPARSL  404 (501)
T ss_pred             CHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHH--HHHHHHHHHcCccCCCCCcchhhc
Confidence            34443 456999999863   456667644322111110000011123323322  3567777776665  336678899


Q ss_pred             CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765        176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY  255 (606)
Q Consensus       176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~  255 (606)
                      |||++||+-+||+|.++|++|+..+||.|||..+++.+.+.|.+.+++|+.|++++-+.+ +++.+||||.+|.+|+++.
T Consensus       405 SGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~Gri~~  483 (501)
T COG3845         405 SGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYEGRIVG  483 (501)
T ss_pred             CCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeCCceec
Confidence            999999999999999999999999999999999999999999999999999999999987 6899999999999999998


Q ss_pred             EcChhH
Q psy13765        256 QGATDQ  261 (606)
Q Consensus       256 ~G~~~~  261 (606)
                      ..++++
T Consensus       484 ~~~~~~  489 (501)
T COG3845         484 IVPPEE  489 (501)
T ss_pred             cccccc
Confidence            888765

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.90  E-value=5.4e-23  Score=240.04  Aligned_cols=94  Identities=27%  Similarity=0.472  Sum_probs=86.8

Q ss_pred             ccCCCCCCCCchhhhHHHHHHhhhc---CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcc
Q psy13765        167 FLDEPTTSNPNDQKKRLSIALELIN---NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFD  243 (606)
Q Consensus       167 ~~de~~~~~s~g~~krl~IA~aL~~---~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D  243 (606)
                      .++++...||+||+||+.||++|+.   +|++++|||||+|||+.+...+.+.|+++.++|.|||+++|++. .+ +.+|
T Consensus       821 ~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD  898 (924)
T TIGR00630       821 KLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD-VI-KTAD  898 (924)
T ss_pred             hhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCC
Confidence            4688999999999999999999997   59999999999999999999999999999888999999999986 34 6799


Q ss_pred             eeeee------cCCcEEEEcChhHH
Q psy13765        244 QVYLL------SGGQCLYQGATDQL  262 (606)
Q Consensus       244 ~v~~L------~~G~~~~~G~~~~~  262 (606)
                      +++.|      ++|++++.|+++++
T Consensus       899 ~ii~Lgp~~G~~gG~iv~~G~~~~l  923 (924)
T TIGR00630       899 YIIDLGPEGGDGGGTIVASGTPEEV  923 (924)
T ss_pred             EEEEecCCccCCCCEEEEeCCHHHh
Confidence            99999      79999999998875

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.89  E-value=3.6e-23  Score=197.83  Aligned_cols=227  Identities=20%  Similarity=0.308  Sum_probs=161.1

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CccEEEECCcc---CC
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG---VTGQILTNGHS---RN  102 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~---~~G~I~~~G~~---~~  102 (606)
                      +.++||+..+...    .+...++++||+++++||+-+++|.||||||-..|+|+|..+..   ......+++.+   .+
T Consensus         4 LDIrnL~IE~~Ts----qG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~   79 (330)
T COG4170           4 LDIRNLTIEFKTS----QGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLS   79 (330)
T ss_pred             ccccceEEEEecC----CCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCC
Confidence            5678888877653    35567999999999999999999999999999999999986532   12333444433   23


Q ss_pred             hhhhc----ccEEEEccCCC--CCCCCcH-HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc----cccCCC
Q psy13765        103 INAFR----RVSCYIQQDDR--LQPLLTI-ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV----MFLDEP  171 (606)
Q Consensus       103 ~~~~~----~~~~yv~Q~~~--l~~~ltv-~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~----~~~de~  171 (606)
                      +++.|    +.++.++|++.  +.|.-++ .++++..---...++-=.  --|=|||-+  .+|+++-.+    -++...
T Consensus        80 Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq--~F~WrKrrA--IeLLHrVGIKdHkDIM~SY  155 (330)
T COG4170          80 PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQ--RFGWRKRRA--IELLHRVGIKDHKDIMRSY  155 (330)
T ss_pred             hHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhh--hhchhHHHH--HHHHHHhccccHHHHHHhC
Confidence            34444    34678999875  2333222 222222111111111000  113344443  355555333    134444


Q ss_pred             CCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765        172 TTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSG  250 (606)
Q Consensus       172 ~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~  250 (606)
                      .-.+-.||-|+|.||.|++.+|++|+.||||+.+|+.++.++.++|.++.+ +|.||++++||.. .+.+.||++-+|.-
T Consensus       156 P~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~VlYC  234 (330)
T COG4170         156 PYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKINVLYC  234 (330)
T ss_pred             cchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheEEEEe
Confidence            455667888888888888888999999999999999999999999999987 5899999999987 48899999999999


Q ss_pred             CcEEEEcChhHHHH
Q psy13765        251 GQCLYQGATDQLVN  264 (606)
Q Consensus       251 G~~~~~G~~~~~~~  264 (606)
                      |+-++.++.+++++
T Consensus       235 GQ~~ESa~~e~l~~  248 (330)
T COG4170         235 GQTVESAPSEELVT  248 (330)
T ss_pred             cccccccchhHHhc
Confidence            99999999998875

>KOG0927|consensus

Probab=99.88  E-value=6.1e-23  Score=219.42  Aligned_cols=222  Identities=17%  Similarity=0.220  Sum_probs=133.8

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CccEEEECCccCChhh
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG-VTGQILTNGHSRNINA  105 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~-~~G~I~~~G~~~~~~~  105 (606)
                      -.+.++|+++++        .++.+++|+++++.+|+-++|+|||||||||+|++|+|...|- .+=.++.-.++..++.
T Consensus        74 ~dvk~~sls~s~--------~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~  145 (614)
T KOG0927|consen   74 RDVKIESLSLSF--------HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSE  145 (614)
T ss_pred             ccceeeeeeecc--------CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCch
Confidence            468889999886        4578999999999999999999999999999999999987651 1112222222221111


Q ss_pred             hcccEEEEccCCCCCCCCcHHHHHHHcCCc--c-ccCC------cc--ccCChHHHHHHHHHHHHhcCCcccccCCCCCC
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLD--E-SQNT------RS--SQLSGGQKKRLSIALELINNPRVMFLDEPTTS  174 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~--~-~~~~------~~--~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~  174 (606)
                      .. .+-+|.+.... .....+..++.+.-.  + ..++      +.  .+.+.=+.|-..|..+|--.+.  ..|..+.+
T Consensus       146 ~~-av~~v~~~~~~-e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~--m~~k~~~~  221 (614)
T KOG0927|consen  146 KQ-AVQAVVMETDH-ERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSE--MQDKKVKD  221 (614)
T ss_pred             HH-HHHHHhhhhHH-HHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHh--HHHHHhhc
Confidence            10 00011100000 000001111111000  0 0000      00  0011112222222222221111  23445556


Q ss_pred             CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc-E
Q psy13765        175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ-C  253 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~-~  253 (606)
                      +|||+|+|+++||+|..+|++|+|||||+|||..+...+-+.|.+..+  .++|+++|.-+ .+-..|.+|+-|.+++ +
T Consensus       222 ~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~QD-fln~vCT~Ii~l~~kkl~  298 (614)
T KOG0927|consen  222 LSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHSQD-FLNGVCTNIIHLDNKKLI  298 (614)
T ss_pred             cCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecchh-hhhhHhhhhheeccccee
Confidence            777777777777777777999999999999999999999888866532  28999999854 6889999999999999 5


Q ss_pred             EEEcChhHHH
Q psy13765        254 LYQGATDQLV  263 (606)
Q Consensus       254 ~~~G~~~~~~  263 (606)
                      .|.|+.++..
T Consensus       299 ~y~Gnydqy~  308 (614)
T KOG0927|consen  299 YYEGNYDQYV  308 (614)
T ss_pred             eecCCHHHHh
Confidence            6778876543

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.88  E-value=1.6e-22  Score=198.86  Aligned_cols=168  Identities=18%  Similarity=0.131  Sum_probs=107.2

Q ss_pred             ceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEEC--Ccc----CChhhhcccEEEEccCCCCCCCCcH
Q psy13765         52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTN--GHS----RNINAFRRVSCYIQQDDRLQPLLTI  125 (606)
Q Consensus        52 L~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~--G~~----~~~~~~~~~~~yv~Q~~~l~~~ltv  125 (606)
                      ++++++++.+| +++|+||||||||||+.+|.....    |+....  |..    .....-...+..++|+..+.+.   
T Consensus        12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~----~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~---   83 (198)
T cd03276          12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG----GKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN---   83 (198)
T ss_pred             eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc----CCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCC---
Confidence            47788888888 889999999999999999974321    111111  110    0011113456777777554441   


Q ss_pred             HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhh----hcCCcEEEEeCC
Q psy13765        126 ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL----INNPRVMFLDEP  201 (606)
Q Consensus       126 ~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL----~~~P~lllLDEP  201 (606)
                                        .+++=++++   +.+++...  -..+++...+|+|||||++||+|+    +.+|++++||||
T Consensus        84 ------------------~~~~~~~~~---~~~~l~~~--~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP  140 (198)
T cd03276          84 ------------------PLCVLSQDM---ARSFLTSN--KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEF  140 (198)
T ss_pred             ------------------cCCHHHHHH---HHHHhccc--cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCc
Confidence                              011111111   12222221  123444455555555555555555    467999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhC---CCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765        202 TTGLDSQSCSQCIKLLKMISQQ---GRTIICTIHQPSATLFQMFDQVYLLSGGQ  252 (606)
Q Consensus       202 TsgLD~~~~~~i~~~l~~l~~~---g~tii~~~H~~~~~i~~~~D~v~~L~~G~  252 (606)
                      |+|||..+...+.+.|+++.++   +.||++++|++.. +.+ +|+|.+|..++
T Consensus       141 ~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~-i~~-~d~v~~~~~~~  192 (198)
T cd03276         141 DVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG-LAS-SDDVKVFRMKD  192 (198)
T ss_pred             ccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc-ccc-ccceeEEEecC
Confidence            9999999999999999998653   3689999999874 544 59999998654

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0927|consensus

Probab=99.88  E-value=4.9e-23  Score=220.17  Aligned_cols=186  Identities=23%  Similarity=0.359  Sum_probs=139.3

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhh
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA  105 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~  105 (606)
                      +..+.++|++|.|+.+       ..++++++|-+..++.+|++||||+|||||||++.|...| ..|.|.-.-+.     
T Consensus       387 ~pvi~~~nv~F~y~~~-------~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p-~~G~vs~~~H~-----  453 (614)
T KOG0927|consen  387 PPVIMVQNVSFGYSDN-------PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP-TIGMVSRHSHN-----  453 (614)
T ss_pred             CCeEEEeccccCCCCc-------chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc-ccccccccccc-----
Confidence            4568899999987532       2699999999999999999999999999999999999887 58888654321     


Q ss_pred             hcccEEEEccCCCCCC--CCc-----------------HHHHHHHcCCc-cccCCccccCChHHHHHHHHHHHHhcCCcc
Q psy13765        106 FRRVSCYIQQDDRLQP--LLT-----------------IENVMSLLGLD-ESQNTRSSQLSGGQKKRLSIALELINNPRV  165 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~--~lt-----------------v~~~l~~~gl~-~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~  165 (606)
                         ++++-.|+....-  ..+                 +..++..+||. +..+.++++||+|||+||..|+.++..   
T Consensus       454 ---~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kq---  527 (614)
T KOG0927|consen  454 ---KLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQ---  527 (614)
T ss_pred             ---cchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcC---
Confidence               1222222211100  001                 23456667777 445556677888888888776666666   


Q ss_pred             cccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhccee
Q psy13765        166 MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQV  245 (606)
Q Consensus       166 ~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v  245 (606)
                                                 |.+|+|||||+|||..+...+.+.|.+.   .-++|+++||.. .+-++++++
T Consensus       528 ---------------------------P~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi  576 (614)
T KOG0927|consen  528 ---------------------------PHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEI  576 (614)
T ss_pred             ---------------------------CcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHh
Confidence                                       9999999999999999999998888654   358999999977 588999999


Q ss_pred             eeecCCcE-EEEcChhH
Q psy13765        246 YLLSGGQC-LYQGATDQ  261 (606)
Q Consensus       246 ~~L~~G~~-~~~G~~~~  261 (606)
                      ++..+|.+ .+.|+...
T Consensus       577 ~~c~~~~~~~~~G~i~~  593 (614)
T KOG0927|consen  577 WVCENGTVTKWDGDIEI  593 (614)
T ss_pred             HhhccCceeecCccHHH
Confidence            99987765 56676543

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.88  E-value=2.6e-22  Score=203.96  Aligned_cols=178  Identities=15%  Similarity=0.196  Sum_probs=111.5

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCcc-------C---ChhhhcccEEEEccCCCCC---------
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-------R---NINAFRRVSCYIQQDDRLQ---------  120 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~-------~---~~~~~~~~~~yv~Q~~~l~---------  120 (606)
                      .++ +++|+|||||||||||++|++...+ ..|++..++..       .   +.....-.+.|..|++...         
T Consensus        21 ~~~-~~~i~G~NGsGKStll~ai~~~l~~-~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~   98 (247)
T cd03275          21 FDR-FTCIIGPNGSGKSNLMDAISFVLGE-KSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGG   98 (247)
T ss_pred             CCC-eEEEECCCCCCHHHHHHHHHHHhCC-CcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECC
Confidence            344 9999999999999999999987653 24555443311       0   0001111233333332110         


Q ss_pred             ------C--CC---cHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhh
Q psy13765        121 ------P--LL---TIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL  189 (606)
Q Consensus       121 ------~--~l---tv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL  189 (606)
                            .  ..   .++++++.+|++......+  +..|+-.++.-     ..|+ --.+++...+|+|||||+.||+++
T Consensus        99 ~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~--i~Qg~v~~i~~-----~~p~-~~~~~~~~~LS~G~k~rl~la~al  170 (247)
T cd03275          99 SSSYRINGKVVSLKEYNEELEKINILVKARNFL--VFQGDVESIAS-----KNPP-GKRFRDMDNLSGGEKTMAALALLF  170 (247)
T ss_pred             ceEEEECCEEecHHHHHHHHHHhCCCCCCCeEE--EECCchhhhhh-----ccCc-chhhhhHHHcCHHHHHHHHHHHHH
Confidence                  0  00   1245666666643221111  11222211110     0010 011233456788888888888888


Q ss_pred             hcC----CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec
Q psy13765        190 INN----PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS  249 (606)
Q Consensus       190 ~~~----P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~  249 (606)
                      +.+    |+++++||||+|||+.++..+.+.|++++++|.|||+++|+++  +.+.+|++++|.
T Consensus       171 ~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~--~~~~~d~i~~~~  232 (247)
T cd03275         171 AIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEE--FFSKADALVGVY  232 (247)
T ss_pred             HHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHH--HHhhCCeEEEEE
Confidence            764    8999999999999999999999999999877999999999953  568999999995

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.87  E-value=1e-21  Score=206.22  Aligned_cols=189  Identities=19%  Similarity=0.247  Sum_probs=128.2

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhh
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA  105 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~  105 (606)
                      ...++|.++++++.         ---|.==.++|..||+++++||||-||||+.++|+|...| .+|.    .       
T Consensus       340 ~~lv~y~~~~k~~g---------~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP-deg~----~-------  398 (591)
T COG1245         340 DTLVEYPDLKKTYG---------DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP-DEGS----E-------  398 (591)
T ss_pred             ceeeecchheeecC---------ceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccC-CCCC----C-------
Confidence            34567777777652         1234555678888999999999999999999999999887 4665    1       


Q ss_pred             hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc-cccCCCCCCCCchhhhHHH
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-MFLDEPTTSNPNDQKKRLS  184 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~krl~  184 (606)
                      ..-.++|=||--.--...||++++....-....+         ..=+.    +++..-++ -++|.+..+|||||.|||+
T Consensus       399 ~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~---------s~~~~----ei~~pl~l~~i~e~~v~~LSGGELQRva  465 (591)
T COG1245         399 EDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGS---------SYFKT----EIVKPLNLEDLLERPVDELSGGELQRVA  465 (591)
T ss_pred             ccceEeecceeecCCCCCcHHHHHHHhhhhhccc---------chhHH----hhcCccchHHHHhcccccCCchhHHHHH
Confidence            1234677777654445667766654321110000         00000    11111111 1344455555555555555


Q ss_pred             HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeec
Q psy13765        185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLS  249 (606)
Q Consensus       185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~  249 (606)
                      ||.||.+++++.+||||++-||++.+..+.+.|++...+ ++|.+++.||.- .+--++||+++.+
T Consensus       466 Iaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~-~~dyvsDr~ivF~  530 (591)
T COG1245         466 IAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIY-MIDYVSDRLIVFE  530 (591)
T ss_pred             HHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEeccee-hhhhhhceEEEEe
Confidence            666666679999999999999999999999999999874 899999999976 3566899999886

>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.87  E-value=2.3e-23  Score=203.51  Aligned_cols=208  Identities=24%  Similarity=0.417  Sum_probs=187.8

Q ss_pred             HHHHHHHHHHHHHhhcChhHH-HHHHHHHHHHHHHHHHhhcCCCCChHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy13765        333 NQLGVLLSRGLLKVKRDSTLT-HLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEM  411 (606)
Q Consensus       333 ~q~~~l~~R~~~~~~Rd~~~~-~~r~~~~i~~all~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er  411 (606)
                      +|++.+++|+++..+|||... ...++..++.++++|.+|.++++..++. ++.+++++.+....+.........+..|+
T Consensus         1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (210)
T PF01061_consen    1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER   79 (210)
T ss_pred             CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence            599999999999999999888 8999999999999999999988444444 67788887777777666666657788999


Q ss_pred             hhheecccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHhccccc
Q psy13765        412 SILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNV  491 (606)
Q Consensus       412 ~v~~rE~~~~~Y~~~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~~~~  491 (606)
                      ..+.||+.++.|++.+|.+||.+.+++..++.++++.++.|++.|++.+  +++.+++.++++.+++.++|.+++++++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~  157 (210)
T PF01061_consen   80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS  157 (210)
T ss_pred             cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence            9999999999999999999999999999999999999999999999887  77888888899999999999999999865


Q ss_pred             -hhHHHHHHHHHHHHHHhcccccCCCCcccccccccccCHHHHHHHHHHHHHh
Q psy13765        492 -VNGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIY  543 (606)
Q Consensus       492 -~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~iS~~~y~~eal~~n~~  543 (606)
                       ..+..+.+++..+++++||.+.|.+.+|+|++|+.|+||++|++|++..++|
T Consensus       158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f  210 (210)
T PF01061_consen  158 FRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF  210 (210)
T ss_pred             hhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence             5588899999999999999999999999999999999999999999998875

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.86  E-value=2.1e-21  Score=192.99  Aligned_cols=172  Identities=17%  Similarity=0.208  Sum_probs=116.7

Q ss_pred             ceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC------------------CccEEE--ECCccCChhhhcccEE
Q psy13765         52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG------------------VTGQIL--TNGHSRNINAFRRVSC  111 (606)
Q Consensus        52 L~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~------------------~~G~I~--~~G~~~~~~~~~~~~~  111 (606)
                      ++++++++.+| +.+|+|||||||||||.+|.-.....                  .++.|.  +++.... -.++...-
T Consensus        14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~-~~~~n~~~   91 (213)
T cd03277          14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGN-IQVDNLCQ   91 (213)
T ss_pred             cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCc-cccCCceE
Confidence            35667777676 88999999999999999986532110                  011111  1111100 12233344


Q ss_pred             EEccCCC-CCCCCcHHHHHHHcCC-ccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhh
Q psy13765        112 YIQQDDR-LQPLLTIENVMSLLGL-DESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL  189 (606)
Q Consensus       112 yv~Q~~~-l~~~ltv~~~l~~~gl-~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL  189 (606)
                      +++|+.. -+..++..+++..++- ....+..+++||+|||||+.++.+                          +|+++
T Consensus        92 ~~~q~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~--------------------------la~~~  145 (213)
T cd03277          92 FLPQDRVGEFAKLSPIELLVKFREGEQLQELDPHHQSGGERSVSTMLYL--------------------------LSLQE  145 (213)
T ss_pred             EEchHHHHHHHhCChHhHheeeecCCCccccchhhccccHHHHHHHHHH--------------------------HHHHh
Confidence            6666543 2455667777654432 234456677899999988765543                          34455


Q ss_pred             hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-CEEEEEecCCchHHHhhcc--eeeeecCCc
Q psy13765        190 INNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-G-RTIICTIHQPSATLFQMFD--QVYLLSGGQ  252 (606)
Q Consensus       190 ~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g-~tii~~~H~~~~~i~~~~D--~v~~L~~G~  252 (606)
                      +.+|+++++||||+|||+.++..+.+.+++++++ | .|+|++||+... ..+.+|  ++++|.+|+
T Consensus       146 ~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~~~v~~l~~g~  211 (213)
T cd03277         146 LTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEKMTVLCVYNGP  211 (213)
T ss_pred             ccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCceEEEEEecCc
Confidence            6679999999999999999999999999999876 5 589999999764 446676  678888886

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG2355|consensus

Probab=99.86  E-value=6.6e-21  Score=181.96  Aligned_cols=200  Identities=22%  Similarity=0.358  Sum_probs=149.6

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh--
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--  103 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--  103 (606)
                      .-.|+++++.|+|+.       ..+++-|+|++++.|....++|.||||||||||+|+|-.-.. .|.|.++|+..-.  
T Consensus        11 ~~aievsgl~f~y~~-------~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~-~~~v~VlgrsaFhDt   82 (291)
T KOG2355|consen   11 DFAIEVSGLQFKYKV-------SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG-GGVVQVLGRSAFHDT   82 (291)
T ss_pred             cceEEEeccEEeccc-------CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc-CCeEEEcCcCccccc
Confidence            346899999999853       348999999999999999999999999999999999975433 5899999974211  


Q ss_pred             ------------hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccC--C-----------ccccCChHHHHHHHHHHH
Q psy13765        104 ------------NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQN--T-----------RSSQLSGGQKKRLSIALE  158 (606)
Q Consensus       104 ------------~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~--~-----------~~~~lSgGqrqRv~ia~~  158 (606)
                                  .++.+.+++-- +--++...++++++...|-.+...  +           +.+.+|-|||+||.|+..
T Consensus        83 ~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMG  161 (291)
T KOG2355|consen   83 SLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMG  161 (291)
T ss_pred             cccccCceeEecccccccccccc-cccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHh
Confidence                        12233333222 333445667777776665433211  0           123355566655555554


Q ss_pred             HhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchH
Q psy13765        159 LINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSAT  237 (606)
Q Consensus       159 L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~  237 (606)
                                                    |++--++|+|||-|--||.-++.++++.+++-.+ +|.||+..||-.+. 
T Consensus       162 ------------------------------LL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDG-  210 (291)
T KOG2355|consen  162 ------------------------------LLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDG-  210 (291)
T ss_pred             ------------------------------cccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccc-
Confidence                                          4444899999999999999999999999998876 59999999998774 


Q ss_pred             HHhhcceeeeecCCcEEEEcChhHHHHH
Q psy13765        238 LFQMFDQVYLLSGGQCLYQGATDQLVNY  265 (606)
Q Consensus       238 i~~~~D~v~~L~~G~~~~~G~~~~~~~~  265 (606)
                      +.....+++.+++|+++..-+.+++.++
T Consensus       211 Le~Wpthl~yi~~Gkl~~~l~~~~i~e~  238 (291)
T KOG2355|consen  211 LETWPTHLVYIKSGKLVDNLKYQKIKEF  238 (291)
T ss_pred             hhhcchhEEEecCCeeeeccccchhhhh
Confidence            7789999999999999987777766654

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.86  E-value=1.4e-21  Score=192.38  Aligned_cols=147  Identities=18%  Similarity=0.188  Sum_probs=111.1

Q ss_pred             cceeeeEEEeCC-eEEEEECCCCCCHHHHHHHHh--------CCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCC
Q psy13765         51 VLKNLCGRFPSN-QLIAIMGPSGAGKSSLLDVLS--------GYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQP  121 (606)
Q Consensus        51 iL~~vs~~i~~G-e~~aIiGpsGaGKSTLL~~L~--------g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~  121 (606)
                      -..++|+++.+| ++++|.|||||||||||++|+        |..-+. ..              ...++|..|.-.   
T Consensus        16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~-~~--------------~~~~~~~~~~~~---   77 (200)
T cd03280          16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPA-AE--------------GSSLPVFENIFA---   77 (200)
T ss_pred             ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccc-cc--------------cccCcCccEEEE---
Confidence            356789999999 589999999999999999998        432221 00              012334333321   


Q ss_pred             CCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCC
Q psy13765        122 LLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP  201 (606)
Q Consensus       122 ~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEP  201 (606)
                               .++.++..+...+.+|+||||++.+++++ .+                              |+++++|||
T Consensus        78 ---------~lg~~~~l~~~~s~fs~g~~~~~~i~~~~-~~------------------------------p~llllDEp  117 (200)
T cd03280          78 ---------DIGDEQSIEQSLSTFSSHMKNIARILQHA-DP------------------------------DSLVLLDEL  117 (200)
T ss_pred             ---------ecCchhhhhcCcchHHHHHHHHHHHHHhC-CC------------------------------CcEEEEcCC
Confidence                     22333344555677899999988866542 33                              999999999


Q ss_pred             CCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        202 TTGLDSQSCSQCI-KLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       202 TsgLD~~~~~~i~-~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      |+|||+.+...+. ..++++++.|.|+|++||+.  ++.+++|++..+++|++.+.+
T Consensus       118 ~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~  172 (200)
T cd03280         118 GSGTDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENASMEFDP  172 (200)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence            9999999999996 57888887799999999983  467999999999999998874

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>KOG0060|consensus

Probab=99.84  E-value=5e-20  Score=198.51  Aligned_cols=176  Identities=26%  Similarity=0.387  Sum_probs=133.4

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF  106 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~  106 (606)
                      ..|++++|+..-|.+      +..+++|+|++|++|+-+.|.||||||||+|+++|+|+.+. .+|++..-....+    
T Consensus       432 n~i~~e~v~l~tPt~------g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~-~~G~l~k~~~~~~----  500 (659)
T KOG0060|consen  432 NAIEFEEVSLSTPTN------GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPS-TGGKLTKPTDGGP----  500 (659)
T ss_pred             ceEEeeeeeecCCCC------CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccccc-CCCeEEecccCCC----
Confidence            679999999986542      35688899999999999999999999999999999999875 5898876443211    


Q ss_pred             cccEEEEccCCCCCCCCc-----------------------HHHHHHHcCCccccCCcc-----------ccCChHHHHH
Q psy13765        107 RRVSCYIQQDDRLQPLLT-----------------------IENVMSLLGLDESQNTRS-----------SQLSGGQKKR  152 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~lt-----------------------v~~~l~~~gl~~~~~~~~-----------~~lSgGqrqR  152 (606)
                       +.+-||||.|.+.-. |                       +..+|+.++|.|...+-.           ..||+||+||
T Consensus       501 -~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQR  578 (659)
T KOG0060|consen  501 -KDLFFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQR  578 (659)
T ss_pred             -CceEEecCCCCcccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHH
Confidence             457899998865322 1                       134455555555433211           1367777777


Q ss_pred             HHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy13765        153 LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIH  232 (606)
Q Consensus       153 v~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H  232 (606)
                      ++.||-+.++                              |++-+|||-||++|......+.+.+++   .|.|.|-+.|
T Consensus       579 La~ARLfy~k------------------------------Pk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgH  625 (659)
T KOG0060|consen  579 LAFARLFYHK------------------------------PKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGH  625 (659)
T ss_pred             HHHHHHHhcC------------------------------CceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEecc
Confidence            7655555555                              999999999999999999888887764   4999999999


Q ss_pred             CCchHHHhhcceeeeecC
Q psy13765        233 QPSATLFQMFDQVYLLSG  250 (606)
Q Consensus       233 ~~~~~i~~~~D~v~~L~~  250 (606)
                      ..+  +.+.-|.++-|++
T Consensus       626 RkS--L~kfHd~~L~~~g  641 (659)
T KOG0060|consen  626 RKS--LWKFHDYVLRMDG  641 (659)
T ss_pred             HHH--HHhhhhEEEEecC
Confidence            975  5677788888875

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.81  E-value=2e-19  Score=173.82  Aligned_cols=153  Identities=20%  Similarity=0.224  Sum_probs=99.1

Q ss_pred             eeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC---C--CccEE-EECCccCChhhhcccEEEEccCCC-CCCCCcH
Q psy13765         53 KNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN---G--VTGQI-LTNGHSRNINAFRRVSCYIQQDDR-LQPLLTI  125 (606)
Q Consensus        53 ~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~---~--~~G~I-~~~G~~~~~~~~~~~~~yv~Q~~~-l~~~ltv  125 (606)
                      ++......++.+.+|+||||||||++|.+|.-....   .  ..... ..++. .....-...+...++++. ++|    
T Consensus        13 ~~~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~f~~~~~~~~----   87 (178)
T cd03239          13 RDETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGG-VKAGINSASVEITFDKSYFLVL----   87 (178)
T ss_pred             CCCEEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccc-cCCCCceEEEEEEEECceEEec----
Confidence            333444444449999999999999999998542211   0  01111 11110 010111122333333331 111    


Q ss_pred             HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCC
Q psy13765        126 ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL  205 (606)
Q Consensus       126 ~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgL  205 (606)
                                +...+.+  +|+|||||+++|++++..                          .+.+|+++++||||+||
T Consensus        88 ----------~~~~~~~--LS~Ge~~r~~Laral~~~--------------------------~~~~p~llilDEp~~~L  129 (178)
T cd03239          88 ----------QGKVEQI--LSGGEKSLSALALIFALQ--------------------------EIKPSPFYVLDEIDAAL  129 (178)
T ss_pred             ----------CCcCccc--CCHHHHHHHHHHHHHHHh--------------------------cCCCCCEEEEECCCCCC
Confidence                      1112223  899999999988877531                          01349999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765        206 DSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG  250 (606)
Q Consensus       206 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~  250 (606)
                      |+..+..+.+.|++++++|.|+|+++|+++  ..+.+|+++.+.+
T Consensus       130 D~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~  172 (178)
T cd03239         130 DPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF  172 (178)
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence            999999999999999877899999999975  3578999999964

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>KOG0066|consensus

Probab=99.81  E-value=9.5e-20  Score=189.75  Aligned_cols=175  Identities=27%  Similarity=0.391  Sum_probs=129.7

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhh
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA  105 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~  105 (606)
                      +..+-++||+|.|+       +.++++++++|-|.=-..+||+||||.||||||++|.|-+.|. .|+..-|        
T Consensus       584 PPvLGlH~VtFgy~-------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~-~GE~RKn--------  647 (807)
T KOG0066|consen  584 PPVLGLHDVTFGYP-------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN-DGELRKN--------  647 (807)
T ss_pred             CCeeecccccccCC-------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC-cchhhcc--------
Confidence            45688899999874       5688999999999999999999999999999999999988773 6655432        


Q ss_pred             hcccEEEEccCC--CCCCCCcHHHH---------------HHHcCCccccCC-ccccCChHHHHHHHHHHHHhcCCcccc
Q psy13765        106 FRRVSCYIQQDD--RLQPLLTIENV---------------MSLLGLDESQNT-RSSQLSGGQKKRLSIALELINNPRVMF  167 (606)
Q Consensus       106 ~~~~~~yv~Q~~--~l~~~ltv~~~---------------l~~~gl~~~~~~-~~~~lSgGqrqRv~ia~~L~~~~~~~~  167 (606)
                      .|-+||+..|..  .+...-|.-+.               +-.+||...+++ .+..|||||+-||++|.--+..     
T Consensus       648 hrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~-----  722 (807)
T KOG0066|consen  648 HRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGG-----  722 (807)
T ss_pred             ceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCC-----
Confidence            244577777653  23333333222               333566555554 4677899999888877554444     


Q ss_pred             cCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeee
Q psy13765        168 LDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYL  247 (606)
Q Consensus       168 ~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~  247 (606)
                                               |+||||||||++||..+...+.+.|++.   .-.||+++||-. .+.+.--.+++
T Consensus       723 -------------------------PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeR-Li~eT~C~LwV  773 (807)
T KOG0066|consen  723 -------------------------PDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDER-LIVETDCNLWV  773 (807)
T ss_pred             -------------------------CCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccc-eeeecCceEEE
Confidence                                     9999999999999999999999888765   347999999965 34444445666


Q ss_pred             ecC
Q psy13765        248 LSG  250 (606)
Q Consensus       248 L~~  250 (606)
                      +.+
T Consensus       774 vE~  776 (807)
T KOG0066|consen  774 VEN  776 (807)
T ss_pred             Ecc
Confidence            654

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.79  E-value=1.9e-19  Score=180.11  Aligned_cols=155  Identities=15%  Similarity=0.153  Sum_probs=115.5

Q ss_pred             ccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEE-EEccCCCCCCCCcHH
Q psy13765         48 PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSC-YIQQDDRLQPLLTIE  126 (606)
Q Consensus        48 ~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~-yv~Q~~~l~~~ltv~  126 (606)
                      .+.+.+|++++.++|++++|.||||+|||||++.++-.                   .+..++| |||.+....+  -++
T Consensus        16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~-------------------~~la~~g~~vpa~~~~~~--~~~   74 (222)
T cd03285          16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI-------------------VLMAQIGCFVPCDSADIP--IVD   74 (222)
T ss_pred             CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH-------------------HHHHHhCCCcCcccEEEe--ccc
Confidence            35689999999999999999999999999999998721                   1122233 6666543322  235


Q ss_pred             HHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCC---CC
Q psy13765        127 NVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP---TT  203 (606)
Q Consensus       127 ~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEP---Ts  203 (606)
                      +++..+|+.+.   ...++|.|+++++.+++.+-.                            +++|++++||||   |+
T Consensus        75 ~il~~~~l~d~---~~~~lS~~~~e~~~~a~il~~----------------------------~~~~sLvLLDEp~~gT~  123 (222)
T cd03285          75 CILARVGASDS---QLKGVSTFMAEMLETAAILKS----------------------------ATENSLIIIDELGRGTS  123 (222)
T ss_pred             eeEeeeccccc---hhcCcChHHHHHHHHHHHHHh----------------------------CCCCeEEEEecCcCCCC
Confidence            56666676643   356789999999887766510                            234999999999   99


Q ss_pred             CCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        204 GLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       204 gLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      +||+.+....  .++.+.+ .|.++|++||+  .++.+++|++..+++|++...++
T Consensus       124 ~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~  175 (222)
T cd03285         124 TYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD  175 (222)
T ss_pred             hHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence            9999888543  3355554 48999999996  35789999999999999987765

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.79  E-value=9.6e-19  Score=180.74  Aligned_cols=76  Identities=25%  Similarity=0.397  Sum_probs=66.7

Q ss_pred             CCCCchhhhHHHHHHhhhc----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeee
Q psy13765        173 TSNPNDQKKRLSIALELIN----NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL  248 (606)
Q Consensus       173 ~~~s~g~~krl~IA~aL~~----~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L  248 (606)
                      ..+|+||+||+.+|++++.    +|+++++||||+|||+.+...+.+.++++.+ +.|+|+++|++.  +.+.+|+++.|
T Consensus       169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l  245 (276)
T cd03241         169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLV  245 (276)
T ss_pred             hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEE
Confidence            3488999999999986543    9999999999999999999999999999865 789999999976  45899999999


Q ss_pred             cCC
Q psy13765        249 SGG  251 (606)
Q Consensus       249 ~~G  251 (606)
                      .+|
T Consensus       246 ~~~  248 (276)
T cd03241         246 EKE  248 (276)
T ss_pred             EEe
Confidence            865

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.78  E-value=5.9e-19  Score=185.54  Aligned_cols=159  Identities=28%  Similarity=0.469  Sum_probs=117.7

Q ss_pred             EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC-C--hhhh---------cc------cEEEEccCCCC
Q psy13765         58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR-N--INAF---------RR------VSCYIQQDDRL  119 (606)
Q Consensus        58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~-~--~~~~---------~~------~~~yv~Q~~~l  119 (606)
                      ..++|++++|+||||-||||-+|+|+|.+.|. -|+-  ++.+- +  .+.|         ++      ++..=+|--.+
T Consensus        96 ~pr~G~V~GilG~NGiGKsTalkILaGel~PN-LG~~--~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~  172 (591)
T COG1245          96 TPRPGKVVGILGPNGIGKSTALKILAGELKPN-LGRY--EDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDL  172 (591)
T ss_pred             CCCCCcEEEEEcCCCccHHHHHHHHhCccccC-CCCC--CCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHH
Confidence            35799999999999999999999999987664 2221  12110 0  0011         10      11111222112


Q ss_pred             CCC---Cc-------------HHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH
Q psy13765        120 QPL---LT-------------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL  183 (606)
Q Consensus       120 ~~~---lt-------------v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl  183 (606)
                      .|.   -+             .+++++.++|+...|+.+.+|||||-||++||.+++.+                     
T Consensus       173 iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rd---------------------  231 (591)
T COG1245         173 IPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRD---------------------  231 (591)
T ss_pred             HHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhcc---------------------
Confidence            221   02             26778888999999999999999999999866666666                     


Q ss_pred             HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765        184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG  250 (606)
Q Consensus       184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~  250 (606)
                               .++.++|||||-||...+....+.++++++.+++||++.||+. .+--++|-|.++.+
T Consensus       232 ---------ADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa-vLD~lsD~vhI~YG  288 (591)
T COG1245         232 ---------ADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA-VLDYLSDFVHILYG  288 (591)
T ss_pred             ---------CCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHH-HHHHhhheeEEEec
Confidence                     9999999999999999999999999999988999999999976 46667888888863

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.77  E-value=1.7e-18  Score=164.81  Aligned_cols=144  Identities=23%  Similarity=0.310  Sum_probs=97.5

Q ss_pred             eeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHc
Q psy13765         53 KNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLL  132 (606)
Q Consensus        53 ~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~  132 (606)
                      ...+..+.++.++.|+|||||||||+++++....-. .+|.+..... .      +.-.++++....+       +    
T Consensus        12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~-~~~~~~~~~~-~------~~g~~~~~~~~~~-------i----   72 (162)
T cd03227          12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGG-AQSATRRRSG-V------KAGCIVAAVSAEL-------I----   72 (162)
T ss_pred             eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHh-cchhhhccCc-c------cCCCcceeeEEEE-------e----
Confidence            344555566679999999999999999998664321 1222222100 0      0011122211111       0    


Q ss_pred             CCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHH
Q psy13765        133 GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQ  212 (606)
Q Consensus       133 gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~  212 (606)
                             ....++|+||+||+++|++|...+                          ..+|+++++|||++|+|+.....
T Consensus        73 -------~~~~~lS~G~~~~~~la~~L~~~~--------------------------~~~~~llllDEp~~gld~~~~~~  119 (162)
T cd03227          73 -------FTRLQLSGGEKELSALALILALAS--------------------------LKPRPLYILDEIDRGLDPRDGQA  119 (162)
T ss_pred             -------hheeeccccHHHHHHHHHHHHhcC--------------------------CCCCCEEEEeCCCCCCCHHHHHH
Confidence                   001238888888888877776531                          01399999999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765        213 CIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG  250 (606)
Q Consensus       213 i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~  250 (606)
                      +.+.+.++.++|.++|++||+++  +.+.+|+++.|..
T Consensus       120 l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~~  155 (162)
T cd03227         120 LAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIKK  155 (162)
T ss_pred             HHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEEE
Confidence            99999988766899999999975  4578999999864

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.77  E-value=1.3e-18  Score=180.83  Aligned_cols=168  Identities=26%  Similarity=0.392  Sum_probs=118.8

Q ss_pred             cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-------CCCccEEEECCccCChhhhcccEEEEccCCCC
Q psy13765         47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS-------NGVTGQILTNGHSRNINAFRRVSCYIQQDDRL  119 (606)
Q Consensus        47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~-------~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l  119 (606)
                      ....+|+|+|++++||++++|+|+|||||||+|++|.|...       .+.+|.|.+--...        .+.+|-+...
T Consensus       394 ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~--------~a~iPge~Ep  465 (593)
T COG2401         394 IERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV--------SALIPGEYEP  465 (593)
T ss_pred             eeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch--------hhccCccccc
Confidence            45679999999999999999999999999999999999531       12478877643211        1222222110


Q ss_pred             -CCCCc--------------HHHHHHHcCCccc--cCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhH
Q psy13765        120 -QPLLT--------------IENVMSLLGLDES--QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKR  182 (606)
Q Consensus       120 -~~~lt--------------v~~~l~~~gl~~~--~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~kr  182 (606)
                       +..-|              ..++++..|+.+.  ..++.+.||-|||.|+.|                           
T Consensus       466 ~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KL---------------------------  518 (593)
T COG2401         466 EFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKL---------------------------  518 (593)
T ss_pred             ccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHH---------------------------
Confidence             00111              1456666666542  233345566666666655                           


Q ss_pred             HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhh-cceeeeecCCcE
Q psy13765        183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQM-FDQVYLLSGGQC  253 (606)
Q Consensus       183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~-~D~v~~L~~G~~  253 (606)
                         |.++...|.+++.||-.+.||..|+..+.+-+.+++++ |.|++++||+|+ .+-++ -|+++++.-|.+
T Consensus       519 ---Akllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpE-v~~AL~PD~li~vgYg~v  587 (593)
T COG2401         519 ---AKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPE-VGNALRPDTLILVGYGKV  587 (593)
T ss_pred             ---HHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHhccCCceeEEeecccc
Confidence               55555559999999999999999999999999999975 999999999986 35555 688888865554

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.77  E-value=8.2e-18  Score=187.42  Aligned_cols=96  Identities=26%  Similarity=0.465  Sum_probs=83.3

Q ss_pred             ccCCCCCCCCchhhhHHHHHHhhhcCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcc
Q psy13765        167 FLDEPTTSNPNDQKKRLSIALELINNP---RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFD  243 (606)
Q Consensus       167 ~~de~~~~~s~g~~krl~IA~aL~~~P---~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D  243 (606)
                      -+.+|.+.|||||.||+.+|.+|....   .+.+|||||+||-......+++.|.+|.++|-|||++.|+++  +.+.+|
T Consensus       815 ~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLd--VIk~AD  892 (935)
T COG0178         815 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLD--VIKTAD  892 (935)
T ss_pred             ecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccc--eEeecC
Confidence            456677777777777777777776666   899999999999999999999999999999999999999976  679999


Q ss_pred             eeeeec------CCcEEEEcChhHHHH
Q psy13765        244 QVYLLS------GGQCLYQGATDQLVN  264 (606)
Q Consensus       244 ~v~~L~------~G~~~~~G~~~~~~~  264 (606)
                      .|+=|-      +|+++..|+|+++.+
T Consensus       893 ~IIDLGPeGG~~GG~iva~GTPeeva~  919 (935)
T COG0178         893 WIIDLGPEGGDGGGEIVASGTPEEVAK  919 (935)
T ss_pred             EEEEcCCCCCCCCceEEEecCHHHHHh
Confidence            999983      589999999999875

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.76  E-value=7e-19  Score=173.43  Aligned_cols=156  Identities=18%  Similarity=0.113  Sum_probs=103.3

Q ss_pred             eeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcC
Q psy13765         54 NLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLG  133 (606)
Q Consensus        54 ~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~g  133 (606)
                      ..++++.+|++++|+|||||||||||++|++..-....|...      .  ..+..+++..|....+            +
T Consensus        21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~------~--~~~~~i~~~dqi~~~~------------~   80 (202)
T cd03243          21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV------P--AESASIPLVDRIFTRI------------G   80 (202)
T ss_pred             eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCc------c--ccccccCCcCEEEEEe------------c
Confidence            345566789999999999999999999999542111122111      0  0112233332221111            1


Q ss_pred             CccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHH
Q psy13765        134 LDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQC  213 (606)
Q Consensus       134 l~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i  213 (606)
                      .........+.++.+++| +..+.+++.                              +|+++++||||+|+|+.....+
T Consensus        81 ~~d~i~~~~s~~~~e~~~-l~~i~~~~~------------------------------~~~llllDEp~~gld~~~~~~l  129 (202)
T cd03243          81 AEDSISDGRSTFMAELLE-LKEILSLAT------------------------------PRSLVLIDELGRGTSTAEGLAI  129 (202)
T ss_pred             CcccccCCceeHHHHHHH-HHHHHHhcc------------------------------CCeEEEEecCCCCCCHHHHHHH
Confidence            222223334556666554 554444444                              4999999999999999988887


Q ss_pred             HH-HHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765        214 IK-LLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL  262 (606)
Q Consensus       214 ~~-~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~  262 (606)
                      .. +++.+.+.+.++|++||+++  +.+.+|++..++.|++...++..++
T Consensus       130 ~~~ll~~l~~~~~~vi~~tH~~~--~~~~~~~~~~l~~~~~~~~~~~~~~  177 (202)
T cd03243         130 AYAVLEHLLEKGCRTLFATHFHE--LADLPEQVPGVKNLHMEELITTGGL  177 (202)
T ss_pred             HHHHHHHHHhcCCeEEEECChHH--HHHHhhcCCCeEEEEEEEEecCCee
Confidence            65 56777777899999999853  5678999999999999988875443

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.76  E-value=1.3e-18  Score=171.09  Aligned_cols=136  Identities=18%  Similarity=0.225  Sum_probs=95.3

Q ss_pred             cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHH
Q psy13765         49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENV  128 (606)
Q Consensus        49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~  128 (606)
                      +.+++|+++.  +|++++|+||||||||||+|+|+|...      +...|.+....      .+++|.+.+++.+|+.+-
T Consensus        14 ~~v~n~i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~~------l~~~G~~v~a~------~~~~q~~~l~~~~~~~d~   79 (199)
T cd03283          14 KRVANDIDME--KKNGILITGSNMSGKSTFLRTIGVNVI------LAQAGAPVCAS------SFELPPVKIFTSIRVSDD   79 (199)
T ss_pred             CeecceEEEc--CCcEEEEECCCCCChHHHHHHHHHHHH------HHHcCCEEecC------ccCcccceEEEeccchhc
Confidence            4577888665  479999999999999999999988532      11233332211      366777788888887664


Q ss_pred             HHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHH
Q psy13765        129 MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQ  208 (606)
Q Consensus       129 l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~  208 (606)
                      +.. ++.         ....+.+|+.-+.+.+.                            ..+|+++++||||+|+|+.
T Consensus        80 l~~-~~s---------~~~~e~~~~~~iL~~~~----------------------------~~~p~llllDEp~~glD~~  121 (199)
T cd03283          80 LRD-GIS---------YFYAELRRLKEIVEKAK----------------------------KGEPVLFLLDEIFKGTNSR  121 (199)
T ss_pred             ccc-ccC---------hHHHHHHHHHHHHHhcc----------------------------CCCCeEEEEecccCCCCHH
Confidence            422 221         11344555543333333                            0259999999999999999


Q ss_pred             HHHHHH-HHHHHHHhCCCEEEEEecCCch
Q psy13765        209 SCSQCI-KLLKMISQQGRTIICTIHQPSA  236 (606)
Q Consensus       209 ~~~~i~-~~l~~l~~~g~tii~~~H~~~~  236 (606)
                      ....+. .+++++.+.|.|+|++||+++.
T Consensus       122 ~~~~l~~~ll~~l~~~~~tiiivTH~~~~  150 (199)
T cd03283         122 ERQAASAAVLKFLKNKNTIGIISTHDLEL  150 (199)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEcCcHHH
Confidence            998775 4788888779999999999763

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.74  E-value=2.4e-17  Score=200.96  Aligned_cols=97  Identities=27%  Similarity=0.401  Sum_probs=88.0

Q ss_pred             cccCCCCCCCCchhhhHHHHHHhhhcC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q psy13765        166 MFLDEPTTSNPNDQKKRLSIALELINN---PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMF  242 (606)
Q Consensus       166 ~~~de~~~~~s~g~~krl~IA~aL~~~---P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~  242 (606)
                      +-|.+|+..|||||.||+.+|..|..+   +.+++|||||+||++.....+++.|++|.+.|.|||++.|++.  +.+.+
T Consensus      1691 l~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~--~i~~a 1768 (1809)
T PRK00635       1691 LPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPA--LLKQA 1768 (1809)
T ss_pred             eeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH--HHHhC
Confidence            467889999999999999999999865   7899999999999999999999999999999999999999965  56789


Q ss_pred             ceeeeec------CCcEEEEcChhHHHH
Q psy13765        243 DQVYLLS------GGQCLYQGATDQLVN  264 (606)
Q Consensus       243 D~v~~L~------~G~~~~~G~~~~~~~  264 (606)
                      |.++-|-      +|++++.|+|+++.+
T Consensus      1769 D~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635       1769 DYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred             CEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence            9999993      489999999999865

>KOG0064|consensus

Probab=99.73  E-value=1.6e-17  Score=177.13  Aligned_cols=171  Identities=22%  Similarity=0.384  Sum_probs=120.8

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF  106 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~  106 (606)
                      ..|.++|+-.-.|       ....++..++|.|++|-.+.|.||||||||+|+++|.|+.|. ..|....   |   .  
T Consensus       480 ~gI~lenIpvItP-------~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv-y~g~L~~---P---~--  543 (728)
T KOG0064|consen  480 NGIILENIPVITP-------AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV-YNGLLSI---P---R--  543 (728)
T ss_pred             cceEEecCceecc-------CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc-cCCeeec---C---C--
Confidence            4578888877654       235689999999999999999999999999999999999864 3444432   1   1  


Q ss_pred             cccEEEEccCCCCC----------CCCc------------HHHHHHHcCCccccCCccc---------cCChHHHHHHHH
Q psy13765        107 RRVSCYIQQDDRLQ----------PLLT------------IENVMSLLGLDESQNTRSS---------QLSGGQKKRLSI  155 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~----------~~lt------------v~~~l~~~gl~~~~~~~~~---------~lSgGqrqRv~i  155 (606)
                      ...+-|+||.|.+-          |..+            .+.++..+.|++...+-.+         -||||||||+..
T Consensus       544 ~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~m  623 (728)
T KOG0064|consen  544 PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGM  623 (728)
T ss_pred             CcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHH
Confidence            23489999988653          3211            1345555556554443322         256666666655


Q ss_pred             HHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765        156 ALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS  235 (606)
Q Consensus       156 a~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~  235 (606)
                      ||.+.                              ++|+.-+|||-||+........+.+..++   .|.+.+-++|+|+
T Consensus       624 ARm~y------------------------------HrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrps  670 (728)
T KOG0064|consen  624 ARMFY------------------------------HRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPS  670 (728)
T ss_pred             HHHHh------------------------------cCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCcc
Confidence            55554                              45999999999999988888777776653   4999999999998


Q ss_pred             hHHHhhcceeeee
Q psy13765        236 ATLFQMFDQVYLL  248 (606)
Q Consensus       236 ~~i~~~~D~v~~L  248 (606)
                        +.++-..++-.
T Consensus       671 --lwk~h~~ll~~  681 (728)
T KOG0064|consen  671 --LWKYHTHLLEF  681 (728)
T ss_pred             --HHHHHHHHHhc
Confidence              45554554444

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.70  E-value=2.6e-17  Score=162.47  Aligned_cols=136  Identities=18%  Similarity=0.277  Sum_probs=99.8

Q ss_pred             ccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcH-H
Q psy13765         48 PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTI-E  126 (606)
Q Consensus        48 ~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv-~  126 (606)
                      ++.+.+|+++++++|++++|+||||+||||+++++++..--                  .+...+|   +...+.+++ +
T Consensus        15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l------------------a~~G~~v---pa~~~~l~~~d   73 (204)
T cd03282          15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM------------------AQIGCFV---PAEYATLPIFN   73 (204)
T ss_pred             CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH------------------HHcCCCc---chhhcCccChh
Confidence            45789999999999999999999999999999999876310                  0111122   122233332 4


Q ss_pred             HHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCC
Q psy13765        127 NVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLD  206 (606)
Q Consensus       127 ~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD  206 (606)
                      ++...++..+..++..+.+|+|++|+ ..+.+++.                              +|+++++|||++|+|
T Consensus        74 ~I~~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~------------------------------~~~lvllDE~~~gt~  122 (204)
T cd03282          74 RLLSRLSNDDSMERNLSTFASEMSET-AYILDYAD------------------------------GDSLVLIDELGRGTS  122 (204)
T ss_pred             heeEecCCccccchhhhHHHHHHHHH-HHHHHhcC------------------------------CCcEEEeccccCCCC
Confidence            56666676666666777899998865 33333444                              499999999999999


Q ss_pred             HHHHHHH-HHHHHHHHhCCCEEEEEecCCc
Q psy13765        207 SQSCSQC-IKLLKMISQQGRTIICTIHQPS  235 (606)
Q Consensus       207 ~~~~~~i-~~~l~~l~~~g~tii~~~H~~~  235 (606)
                      +.....+ ..+++.+.+.|.++|++||+.+
T Consensus       123 ~~~~~~l~~~il~~l~~~~~~~i~~TH~~~  152 (204)
T cd03282         123 SADGFAISLAILECLIKKESTVFFATHFRD  152 (204)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence            9876665 4567788878999999999965

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.68  E-value=1.2e-16  Score=187.47  Aligned_cols=94  Identities=21%  Similarity=0.420  Sum_probs=87.8

Q ss_pred             cCCCCCCCCchhhhHHHHHHhhhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhccee
Q psy13765        168 LDEPTTSNPNDQKKRLSIALELINNP--RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQV  245 (606)
Q Consensus       168 ~de~~~~~s~g~~krl~IA~aL~~~P--~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v  245 (606)
                      +|.++..|||||||||.||++|+.+|  ++++|||||+|||+..+..+.++|++++++|.|||+++|++.. + ..||++
T Consensus       483 l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~-i-~~aD~v  560 (943)
T PRK00349        483 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDT-I-RAADYI  560 (943)
T ss_pred             CCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEE
Confidence            78999999999999999999999997  9999999999999999999999999998889999999999774 5 579999


Q ss_pred             eee------cCCcEEEEcChhHHH
Q psy13765        246 YLL------SGGQCLYQGATDQLV  263 (606)
Q Consensus       246 ~~L------~~G~~~~~G~~~~~~  263 (606)
                      ++|      ++|++++.|+++++.
T Consensus       561 i~LgpgaG~~~G~iv~~g~~~e~~  584 (943)
T PRK00349        561 VDIGPGAGVHGGEVVASGTPEEIM  584 (943)
T ss_pred             EEeccccCCCCCEEeeccCHHHHh
Confidence            999      899999999998874

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.68  E-value=1.6e-16  Score=186.15  Aligned_cols=94  Identities=23%  Similarity=0.425  Sum_probs=87.7

Q ss_pred             cCCCCCCCCchhhhHHHHHHhhhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhccee
Q psy13765        168 LDEPTTSNPNDQKKRLSIALELINNP--RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQV  245 (606)
Q Consensus       168 ~de~~~~~s~g~~krl~IA~aL~~~P--~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v  245 (606)
                      +|.++..|||||+|||.||++|+.+|  ++++|||||+|||+.+...+.++|++++++|.|||+++|+++ .+ ..||++
T Consensus       481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~-~i-~~aD~v  558 (924)
T TIGR00630       481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE-TI-RAADYV  558 (924)
T ss_pred             cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HH-hhCCEE
Confidence            68899999999999999999999986  899999999999999999999999999988999999999976 34 589999


Q ss_pred             eee------cCCcEEEEcChhHHH
Q psy13765        246 YLL------SGGQCLYQGATDQLV  263 (606)
Q Consensus       246 ~~L------~~G~~~~~G~~~~~~  263 (606)
                      ++|      ++|++++.|+++++.
T Consensus       559 i~LgpgaG~~~G~Iv~~g~~~el~  582 (924)
T TIGR00630       559 IDIGPGAGIHGGEVVASGTPEEIL  582 (924)
T ss_pred             EEecccccCCCCEEeeccCHHHHh
Confidence            999      899999999998874

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.67  E-value=1.5e-16  Score=158.62  Aligned_cols=160  Identities=16%  Similarity=0.164  Sum_probs=106.2

Q ss_pred             ccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHH
Q psy13765         48 PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIEN  127 (606)
Q Consensus        48 ~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~  127 (606)
                      ++.+.+|++++.++ ++++|.||||+||||+||++++..-....      |......  +..++++.|   +++.+++.+
T Consensus        17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~------g~~vp~~--~~~i~~~~~---i~~~~~~~~   84 (216)
T cd03284          17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQI------GSFVPAS--KAEIGVVDR---IFTRIGASD   84 (216)
T ss_pred             CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhcc------CCeeccc--cceecceee---EeccCCchh
Confidence            34588999999887 99999999999999999999875321111      2222111  345666654   344444322


Q ss_pred             HHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCC---CCC
Q psy13765        128 VMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP---TTG  204 (606)
Q Consensus       128 ~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEP---Tsg  204 (606)
                                      ++|.|+.+...                        |.+++.-+.+.+.+|++++||||   |++
T Consensus        85 ----------------~ls~g~s~f~~------------------------e~~~l~~~l~~~~~~~llllDEp~~gt~~  124 (216)
T cd03284          85 ----------------DLAGGRSTFMV------------------------EMVETANILNNATERSLVLLDEIGRGTST  124 (216)
T ss_pred             ----------------hhccCcchHHH------------------------HHHHHHHHHHhCCCCeEEEEecCCCCCCh
Confidence                            34555544332                        11122222233456999999999   888


Q ss_pred             CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765        205 LDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       205 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                      +|....  ...+++.+.+. +.|+|++||+.  ++.+++|++..+.+|++...++.+++.
T Consensus       125 lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~  180 (216)
T cd03284         125 YDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVV  180 (216)
T ss_pred             HHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence            887552  23455556665 89999999995  467899998888889988877776654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>KOG0066|consensus

Probab=99.66  E-value=9.8e-17  Score=167.46  Aligned_cols=215  Identities=20%  Similarity=0.298  Sum_probs=137.7

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC---CCC-----CccEEEEC
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR---SNG-----VTGQILTN   97 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~---~~~-----~~G~I~~~   97 (606)
                      .+.|.++|.+.+.        .++.++.|.|+.|-.|..++++||||-||||||+-|+.+.   +|.     .+-+|..+
T Consensus       262 a~DIKiEnF~ISA--------~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad  333 (807)
T KOG0066|consen  262 AMDIKIENFDISA--------QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVAD  333 (807)
T ss_pred             cccceeeeeeeec--------ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeec
Confidence            5778899888774        4577999999999999999999999999999999999863   221     12222222


Q ss_pred             CccC-Ch--hhhcccEEEEccCCCC-----CCCCcHHHHHHHcCCccccCCccccCChHHHHHHHH-HHHHhcCCccccc
Q psy13765         98 GHSR-NI--NAFRRVSCYIQQDDRL-----QPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSI-ALELINNPRVMFL  168 (606)
Q Consensus        98 G~~~-~~--~~~~~~~~yv~Q~~~l-----~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~i-a~~L~~~~~~~~~  168 (606)
                      ..+. +.  ..-.++...+..++.+     ....|+.+-++..- ++  -+-++.-|..-|-|--+ +..+...    .-
T Consensus       334 ~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~-~E--LraiGA~sAEarARRILAGLGFskE----MQ  406 (807)
T KOG0066|consen  334 STSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVA-DE--LRAIGADSAEARARRILAGLGFSKE----MQ  406 (807)
T ss_pred             CcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH-HH--HHHhccccchhHHHHHHhhcCCChh----Hh
Confidence            2110 00  0000111111111100     11122222111100 00  01122334333322221 1111111    22


Q ss_pred             CCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeee
Q psy13765        169 DEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL  248 (606)
Q Consensus       169 de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L  248 (606)
                      +.|+...|||=|.||++||||..+|.+|+|||||+.||-.+...+-+.|+.++   +|.++++||-. .+-..|..|+.|
T Consensus       407 ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQg-FLD~VCtdIIHL  482 (807)
T KOG0066|consen  407 ERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQG-FLDSVCTDIIHL  482 (807)
T ss_pred             cCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccc-hHHHHHHHHhhh
Confidence            67899999999999999999999999999999999999999988888888774   59999999966 588999999999


Q ss_pred             cCCcEE-EEcCh
Q psy13765        249 SGGQCL-YQGAT  259 (606)
Q Consensus       249 ~~G~~~-~~G~~  259 (606)
                      ++-++. |.|..
T Consensus       483 D~qkLhyYrGNY  494 (807)
T KOG0066|consen  483 DNQKLHYYRGNY  494 (807)
T ss_pred             hhhhhhhhcchH
Confidence            987775 44654

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.63  E-value=2.5e-15  Score=154.86  Aligned_cols=76  Identities=17%  Similarity=0.270  Sum_probs=59.1

Q ss_pred             CCCCchhhhHHHHHHhhh---------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc-
Q psy13765        173 TSNPNDQKKRLSIALELI---------NNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMF-  242 (606)
Q Consensus       173 ~~~s~g~~krl~IA~aL~---------~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~-  242 (606)
                      ..+|+||||++.||++|+         .+|+++++||||++||+..+..+.+.++++.    .+++++|+.. .+...| 
T Consensus       182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~~-~~~~~~~  256 (270)
T cd03242         182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDLA-DFDALWL  256 (270)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCch-hccchhc
Confidence            346778888888887764         7999999999999999999999999997653    3555555544 355666 


Q ss_pred             --ceeeeecCCcE
Q psy13765        243 --DQVYLLSGGQC  253 (606)
Q Consensus       243 --D~v~~L~~G~~  253 (606)
                        ++++.+++|++
T Consensus       257 ~~~~i~~l~~g~i  269 (270)
T cd03242         257 RRAQIFRVDAGTL  269 (270)
T ss_pred             cCccEEEEeCcEE
Confidence              67899999885

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.61  E-value=1.5e-15  Score=155.68  Aligned_cols=140  Identities=21%  Similarity=0.232  Sum_probs=95.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCcccc
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQ  138 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~  138 (606)
                      +-++|+||||||||||+++|+|...+ .+|+|.++|+++.    ..++.+.+++++|++.. +.++|.+        .+.
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~-~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~-~r~~v~~--------~~~  181 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILST-GISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVG-IRTDVLD--------GCP  181 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCC-CCceEEECCEEeecchhHHHHHHHhccccccccc-ccccccc--------cch
Confidence            67899999999999999999999877 4999999998753    24556667888987633 3333211        110


Q ss_pred             CCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q psy13765        139 NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK  218 (606)
Q Consensus       139 ~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~  218 (606)
                      .      ..|++                                   ..+...+|+++++|||++      ...+..+++
T Consensus       182 k------~~~~~-----------------------------------~~i~~~~P~villDE~~~------~e~~~~l~~  214 (270)
T TIGR02858       182 K------AEGMM-----------------------------------MLIRSMSPDVIVVDEIGR------EEDVEALLE  214 (270)
T ss_pred             H------HHHHH-----------------------------------HHHHhCCCCEEEEeCCCc------HHHHHHHHH
Confidence            0      11211                                   111123599999999974      233444555


Q ss_pred             HHHhCCCEEEEEecCCchH-H-----------HhhcceeeeecCCcEEEEcChhHH
Q psy13765        219 MISQQGRTIICTIHQPSAT-L-----------FQMFDQVYLLSGGQCLYQGATDQL  262 (606)
Q Consensus       219 ~l~~~g~tii~~~H~~~~~-i-----------~~~~D~v~~L~~G~~~~~G~~~~~  262 (606)
                      .+ ++|.|+|+++|+++.. +           ...|||+++|++|+  ..|+++++
T Consensus       215 ~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i  267 (270)
T TIGR02858       215 AL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV  267 (270)
T ss_pred             HH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence            54 4699999999986532 2           26699999999877  56666554

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.56  E-value=2.7e-15  Score=145.97  Aligned_cols=140  Identities=17%  Similarity=0.192  Sum_probs=88.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccc
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSS  143 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~  143 (606)
                      +++|.||||+||||+||.++-.......|...      ..+  +-.++++.            +++..++.++..+...+
T Consensus         1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v------~a~--~~~~~~~d------------~il~~~~~~d~~~~~~s   60 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFV------PAE--SAELPVFD------------RIFTRIGASDSLAQGLS   60 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCe------eeh--heEecccc------------eEEEEeCCCCchhcccc
Confidence            46899999999999999997321100122211      101  11122221            22333455555566677


Q ss_pred             cCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHh
Q psy13765        144 QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCI-KLLKMISQ  222 (606)
Q Consensus       144 ~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~-~~l~~l~~  222 (606)
                      .+|+|++|...+   +..                            +.+|+++++|||++|+|+.....+. .+++.+.+
T Consensus        61 ~fs~~~~~l~~~---l~~----------------------------~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~  109 (185)
T smart00534       61 TFMVEMKETANI---LKN----------------------------ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE  109 (185)
T ss_pred             HHHHHHHHHHHH---HHh----------------------------CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh
Confidence            888887764332   221                            1249999999999999999887765 56677777


Q ss_pred             C-CCEEEEEecCCchHHHhhcceeeeecCCcEEEE
Q psy13765        223 Q-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ  256 (606)
Q Consensus       223 ~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~  256 (606)
                      + +.++|++||++  ++.+.+|+.--++++++...
T Consensus       110 ~~~~~iii~TH~~--~l~~~~~~~~~v~~~~~~~~  142 (185)
T smart00534      110 KIGALTLFATHYH--ELTKLADEHPGVRNLHMSAD  142 (185)
T ss_pred             cCCCeEEEEecHH--HHHHHhhcCccceEEEEEEE
Confidence            4 89999999996  36788886444455554443

>PRK00064 recF recombination protein F; Reviewed

Probab=99.54  E-value=2.4e-13  Score=145.67  Aligned_cols=81  Identities=20%  Similarity=0.333  Sum_probs=67.2

Q ss_pred             CCCCCCCCchhhhHHHHHHhhh---------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH
Q psy13765        169 DEPTTSNPNDQKKRLSIALELI---------NNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLF  239 (606)
Q Consensus       169 de~~~~~s~g~~krl~IA~aL~---------~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~  239 (606)
                      ..+...+|+||+|++.+|+.|+         .+|+|++||||+++||+..+..+.+.+.++   +..+++|+|++.. +.
T Consensus       268 ~~~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~-~~  343 (361)
T PRK00064        268 LPAADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLED-LA  343 (361)
T ss_pred             CCHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhh-hh
Confidence            3455678999999999999986         799999999999999999999999988754   4588999998653 44


Q ss_pred             hhc--ceeeeecCCcE
Q psy13765        240 QMF--DQVYLLSGGQC  253 (606)
Q Consensus       240 ~~~--D~v~~L~~G~~  253 (606)
                      ..+  ++++.+++|++
T Consensus       344 ~~~~~~~i~~v~~G~i  359 (361)
T PRK00064        344 DLLENAKIFHVEQGKI  359 (361)
T ss_pred             hhhccCcEEEEeCCEE
Confidence            443  47888999986

>KOG0063|consensus

Probab=99.53  E-value=4e-14  Score=148.23  Aligned_cols=159  Identities=24%  Similarity=0.359  Sum_probs=114.4

Q ss_pred             cccceeeeEEEeCC-----eEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCC
Q psy13765         49 KDVLKNLCGRFPSN-----QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLL  123 (606)
Q Consensus        49 ~~iL~~vs~~i~~G-----e~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~l  123 (606)
                      +..+.+..+.|+.|     |++..+|.||.|||||+++++|++.++..|+|-.-.           ++|=||.-.--..-
T Consensus       349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~ln-----------VSykpqkispK~~~  417 (592)
T KOG0063|consen  349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLN-----------VSYKPQKISPKREG  417 (592)
T ss_pred             eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccc-----------eeccccccCccccc
Confidence            45677777777776     578999999999999999999988775455554322           33333332222222


Q ss_pred             c------------------HHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH
Q psy13765        124 T------------------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI  185 (606)
Q Consensus       124 t------------------v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I  185 (606)
                      |                  +.++++-+.+++..|..+.+|||||.||+++|                             
T Consensus       418 tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~-----------------------------  468 (592)
T KOG0063|consen  418 TVRQLLHTKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALA-----------------------------  468 (592)
T ss_pred             hHHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHH-----------------------------
Confidence            2                  34555566666666666777777777777654                             


Q ss_pred             HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHhhcceeeeec
Q psy13765        186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMIS-QQGRTIICTIHQPSATLFQMFDQVYLLS  249 (606)
Q Consensus       186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~i~~~~D~v~~L~  249 (606)
                       .+|-..+++.+.|||.+-||++.+...-+.+++.- +.++|-.++.||.--+ --++||+++..
T Consensus       469 -KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfIma-TYladrvivf~  531 (592)
T KOG0063|consen  469 -LCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMA-TYLADRVIVFE  531 (592)
T ss_pred             -HhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHH-HhhcceeEEEe
Confidence             44555599999999999999999999989888875 4578999999996543 25789998875

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.49  E-value=2.5e-13  Score=135.37  Aligned_cols=77  Identities=32%  Similarity=0.465  Sum_probs=57.4

Q ss_pred             cCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy13765        144 QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ  223 (606)
Q Consensus       144 ~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~  223 (606)
                      .+|||||.++++|.-|+                          ..-....++++||||.++||...+..+.++|+++.+ 
T Consensus       136 ~lSgGEk~~~~Lal~lA--------------------------~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~-  188 (220)
T PF02463_consen  136 FLSGGEKSLVALALLLA--------------------------LQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK-  188 (220)
T ss_dssp             GS-HHHHHHHHHHHHHH--------------------------HHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred             ccccccccccccccccc--------------------------cccccccccccccccccccccccccccccccccccc-
Confidence            79999999998876553                          222345889999999999999999999999998865 


Q ss_pred             CCEEEEEecCCchHHHhhcceeeeec
Q psy13765        224 GRTIICTIHQPSATLFQMFDQVYLLS  249 (606)
Q Consensus       224 g~tii~~~H~~~~~i~~~~D~v~~L~  249 (606)
                      +.-+|++||++.  ++..+|+.+-+.
T Consensus       189 ~~Q~ii~Th~~~--~~~~a~~~~~v~  212 (220)
T PF02463_consen  189 QSQFIITTHNPE--MFEDADKLIGVT  212 (220)
T ss_dssp             TSEEEEE-S-HH--HHTT-SEEEEEE
T ss_pred             cccccccccccc--cccccccccccc
Confidence            478999999954  678999987763

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>TIGR01069 mutS2 MutS2 family protein

Probab=99.48  E-value=6.1e-14  Score=162.78  Aligned_cols=131  Identities=22%  Similarity=0.267  Sum_probs=90.2

Q ss_pred             eeeEEEeCC-eEEEEECCCCCCHHHHHHHHhCCC-CCCCcc-EEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHH
Q psy13765         54 NLCGRFPSN-QLIAIMGPSGAGKSSLLDVLSGYR-SNGVTG-QILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMS  130 (606)
Q Consensus        54 ~vs~~i~~G-e~~aIiGpsGaGKSTLL~~L~g~~-~~~~~G-~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~  130 (606)
                      .+|+.+.+| ++++|.||||+|||||||+|+|.. .+ ..| .|..+        ....++|..|..            .
T Consensus       313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~a-q~G~~Vpa~--------~~~~~~~~d~i~------------~  371 (771)
T TIGR01069       313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMF-QSGIPIPAN--------EHSEIPYFEEIF------------A  371 (771)
T ss_pred             eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHH-HhCCCccCC--------ccccccchhhee------------e
Confidence            368888877 999999999999999999999862 11 122 11110        001123322221            1


Q ss_pred             HcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHH
Q psy13765        131 LLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSC  210 (606)
Q Consensus       131 ~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~  210 (606)
                      .++.+.........+|+|+++++.++..+                               .+|+++++|||++|+|+...
T Consensus       372 ~i~~~~si~~~LStfS~~m~~~~~il~~~-------------------------------~~~sLvLlDE~g~GtD~~eg  420 (771)
T TIGR01069       372 DIGDEQSIEQNLSTFSGHMKNISAILSKT-------------------------------TENSLVLFDELGAGTDPDEG  420 (771)
T ss_pred             ecChHhHHhhhhhHHHHHHHHHHHHHHhc-------------------------------CCCcEEEecCCCCCCCHHHH
Confidence            11222222334566899999887765443                               33999999999999999999


Q ss_pred             HHH-HHHHHHHHhCCCEEEEEecCCch
Q psy13765        211 SQC-IKLLKMISQQGRTIICTIHQPSA  236 (606)
Q Consensus       211 ~~i-~~~l~~l~~~g~tii~~~H~~~~  236 (606)
                      ..+ ..+++.+++.|.++|++||+...
T Consensus       421 ~ala~aiLe~l~~~g~~viitTH~~eL  447 (771)
T TIGR01069       421 SALAISILEYLLKQNAQVLITTHYKEL  447 (771)
T ss_pred             HHHHHHHHHHHHhcCCEEEEECChHHH
Confidence            998 57888888889999999999653

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein

Probab=99.45  E-value=4.5e-12  Score=127.65  Aligned_cols=226  Identities=14%  Similarity=0.128  Sum_probs=157.0

Q ss_pred             HHHHHhhcChhHHHHHHHHHHHHHHHHHHhhcCC-CCC--hHH----HHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy13765        341 RGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNS-GEY--ASS----VLINYNLLFSILIHHVMTSMMLNILTFPMEMSI  413 (606)
Q Consensus       341 R~~~~~~Rd~~~~~~r~~~~i~~all~G~~f~~~-~~~--~~~----~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v  413 (606)
                      |+++...|||.....-+++.++..+++|.++-+. +++  ..+    .+--.|.+.+.....+.....  ......|+.+
T Consensus         1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~~~~--~~~~~~~~g~   78 (236)
T TIGR01247         1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFFSGI--SVIWDRQFGF   78 (236)
T ss_pred             CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHhCH
Confidence            6778889999999999999999999999887542 111  111    111123333222222221111  1111122233


Q ss_pred             heecccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHhccccch-
Q psy13765        414 LIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVV-  492 (606)
Q Consensus       414 ~~rE~~~~~Y~~~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~~~~~-  492 (606)
                      +.|=. ..=.+...|+++|.+.+++..++..+++..+.+++.+.+.  ..++.+++..++..++..++|.++++..++. 
T Consensus        79 ~~~~~-~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~  155 (236)
T TIGR01247        79 LKEIL-VAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSME  155 (236)
T ss_pred             HHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            33222 2225678999999999999999999999999888877553  3455555566677778899999999987654 


Q ss_pred             hHHHHHHHHHHHHHHhcccccCCCCcccccccccccCHHHHHHHHHHHHHhcCCCcccccCCCccccCChhHHHhhcCCC
Q psy13765        493 NGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDELYCHYKEPKKFLQTVSQP  572 (606)
Q Consensus       493 ~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~iS~~~y~~eal~~n~~~~~~~~~~c~~~~c~~~~g~~~L~~~~~~  572 (606)
                      .++.+.+++..+++.+||.+.|.+.+|+|++|+.+++|++|+.|++-....+  +.                       .
T Consensus       156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~--~~-----------------------~  210 (236)
T TIGR01247       156 GFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAG--VS-----------------------P  210 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhC--CC-----------------------c
Confidence            4777888889999999999999999999999999999999999986544332  10                       0


Q ss_pred             CCChhhhHHHHHHHHHHHHHHHHH
Q psy13765        573 SDNFWSSSVTLVFILIVMKLIAYF  596 (606)
Q Consensus       573 ~~~~w~~~~il~~~~~~~~~~~~~  596 (606)
                      ..+.|.++++|+.+.+++.+++..
T Consensus       211 ~~~~~~~~~~l~~~~~~~~~l~~~  234 (236)
T TIGR01247       211 TFPLEQDLLVLTLLAVIFVGIAAV  234 (236)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHH
Confidence            134567788999999888877654

This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.44  E-value=4.3e-13  Score=133.45  Aligned_cols=131  Identities=18%  Similarity=0.152  Sum_probs=81.6

Q ss_pred             ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCC--CCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHH
Q psy13765         50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY--RSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIEN  127 (606)
Q Consensus        50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~--~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~  127 (606)
                      .+=+|+++.=..+..++|.||||+|||||||.++..  ..  ..|......        .-.++|..|.......     
T Consensus        17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la--~~G~~v~a~--------~~~~~~~d~i~~~l~~-----   81 (213)
T cd03281          17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLA--HIGSFVPAD--------SATIGLVDKIFTRMSS-----   81 (213)
T ss_pred             eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHH--hCCCeeEcC--------CcEEeeeeeeeeeeCC-----
Confidence            344555543222389999999999999999999842  22  244443221        1235666664322110     


Q ss_pred             HHHHcCCccccCCccccCC--hHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCC
Q psy13765        128 VMSLLGLDESQNTRSSQLS--GGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL  205 (606)
Q Consensus       128 ~l~~~gl~~~~~~~~~~lS--gGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgL  205 (606)
                                .+.....+|  .-|.||++++++                              ++.+|+++++|||++|+
T Consensus        82 ----------~~si~~~~S~f~~el~~l~~~l~------------------------------~~~~~slvllDE~~~gt  121 (213)
T cd03281          82 ----------RESVSSGQSAFMIDLYQVSKALR------------------------------LATRRSLVLIDEFGKGT  121 (213)
T ss_pred             ----------ccChhhccchHHHHHHHHHHHHH------------------------------hCCCCcEEEeccccCCC
Confidence                      011111233  344566665544                              44459999999999999


Q ss_pred             CHHHHHHH-HHHHHHHHhC---CCEEEEEecCCc
Q psy13765        206 DSQSCSQC-IKLLKMISQQ---GRTIICTIHQPS  235 (606)
Q Consensus       206 D~~~~~~i-~~~l~~l~~~---g~tii~~~H~~~  235 (606)
                      |+.....+ ...++++.++   +.++|++||+++
T Consensus       122 d~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~  155 (213)
T cd03281         122 DTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE  155 (213)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence            99865555 5688888764   358999999965

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain

Probab=99.43  E-value=3.7e-12  Score=125.80  Aligned_cols=151  Identities=16%  Similarity=0.169  Sum_probs=123.1

Q ss_pred             cchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHhccccchhHHHHHHHHH
Q psy13765        423 YSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVNGTFVGPVLV  502 (606)
Q Consensus       423 Y~~~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~~~~~~a~~~~~~~~  502 (606)
                      -+...++++|.+..++..+++++++..+.|++.|++..  .++.+++..++..++..++|.++++..+.. +.......+
T Consensus        57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~-~~~~~~~~~  133 (208)
T TIGR03062        57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNV-GRFLALVLL  133 (208)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence            45567899999999999999999999999999999864  577788888889999999999999987643 333444455


Q ss_pred             HHHHHhcccccCCCCcccccccccccCHHHHHHHHHHHHHhcCCCcccccCCCccccCChhHHHhhcCCCCCChhhhHHH
Q psy13765        503 VPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDELYCHYKEPKKFLQTVSQPSDNFWSSSVT  582 (606)
Q Consensus       503 ~~~~lf~G~~i~~~~ip~~~~W~~~iS~~~y~~eal~~n~~~~~~~~~~c~~~~c~~~~g~~~L~~~~~~~~~~w~~~~i  582 (606)
                      .+.+.++|.+.|.+.+|.|++|+.|++|.+|+.+++-...++.                          .....|.++++
T Consensus       134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~--------------------------~~~~~~~~~~~  187 (208)
T TIGR03062       134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGG--------------------------NDGTLWQAVAV  187 (208)
T ss_pred             HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCC--------------------------cHHHHHHHHHH
Confidence            6777789999999999999999999999999999997665541                          01245888999


Q ss_pred             HHHHHHHHHHHHHHHHHhhh
Q psy13765        583 LVFILIVMKLIAYFFLSWRI  602 (606)
Q Consensus       583 l~~~~~~~~~~~~~~L~~~~  602 (606)
                      |+++.+++.++++..+|++.
T Consensus       188 L~~~~~v~~~la~~~~~~~~  207 (208)
T TIGR03062       188 LLLILVVFLALSLLSARRKR  207 (208)
T ss_pred             HHHHHHHHHHHHHHHHhhhc
Confidence            99999999888888766443

This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=99.43  E-value=6.2e-13  Score=132.90  Aligned_cols=134  Identities=18%  Similarity=0.185  Sum_probs=88.0

Q ss_pred             cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHH
Q psy13765         49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENV  128 (606)
Q Consensus        49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~  128 (606)
                      +.+.+|+++.+++|++++|.||||+||||+++++++..-....|...... .....-+.+....+..+|.+         
T Consensus        18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~~~~~~~~~i~~~~~~~d~~---------   87 (222)
T cd03287          18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-SATLSIFDSVLTRMGASDSI---------   87 (222)
T ss_pred             CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-ceEEeccceEEEEecCcccc---------
Confidence            56899999999999999999999999999999999942212356543321 11111111222222222211         


Q ss_pred             HHHcCCccccCCccccCC--hHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCC
Q psy13765        129 MSLLGLDESQNTRSSQLS--GGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLD  206 (606)
Q Consensus       129 l~~~gl~~~~~~~~~~lS--gGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD  206 (606)
                                   ..++|  ..|-+|++-...-+                              ++|+++++|||.+|.|
T Consensus        88 -------------~~~~StF~~e~~~~~~il~~~------------------------------~~~sLvllDE~~~gT~  124 (222)
T cd03287          88 -------------QHGMSTFMVELSETSHILSNC------------------------------TSRSLVILDELGRGTS  124 (222)
T ss_pred             -------------ccccchHHHHHHHHHHHHHhC------------------------------CCCeEEEEccCCCCCC
Confidence                         12233  24555555333333                              3499999999999999


Q ss_pred             HHHHHHH-HHHHHHHHhC-CCEEEEEecCCc
Q psy13765        207 SQSCSQC-IKLLKMISQQ-GRTIICTIHQPS  235 (606)
Q Consensus       207 ~~~~~~i-~~~l~~l~~~-g~tii~~~H~~~  235 (606)
                      +.....+ ..+++.+.+. +.++|++||++.
T Consensus       125 ~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~  155 (222)
T cd03287         125 THDGIAIAYATLHYLLEEKKCLVLFVTHYPS  155 (222)
T ss_pred             hhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence            8777764 5677787776 899999999975

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK14079 recF recombination protein F; Provisional

Probab=99.41  E-value=4.9e-13  Score=142.66  Aligned_cols=77  Identities=16%  Similarity=0.261  Sum_probs=62.3

Q ss_pred             CCCchhhhHHHHHHhhh---------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcce
Q psy13765        174 SNPNDQKKRLSIALELI---------NNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQ  244 (606)
Q Consensus       174 ~~s~g~~krl~IA~aL~---------~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~  244 (606)
                      .+|+||+|++.+|..|+         .+|++++||||+++||...+..+.+.|....   .++|-+++.+     ..+|+
T Consensus       263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~~it~t~~~-----~~~~~  334 (349)
T PRK14079        263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QAIVAGTEAP-----PGAAL  334 (349)
T ss_pred             hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cEEEEcCCCC-----CCCce
Confidence            47999999999999999         8999999999999999999999998886432   3444444432     57899


Q ss_pred             eeeecCCcEEEEcC
Q psy13765        245 VYLLSGGQCLYQGA  258 (606)
Q Consensus       245 v~~L~~G~~~~~G~  258 (606)
                      ++.+.+|++.-..|
T Consensus       335 ~~~~~~~~~~~~~~  348 (349)
T PRK14079        335 TLRIEAGVFTPEAP  348 (349)
T ss_pred             EEEEeccEecCCCC
Confidence            99999988754443

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=99.39  E-value=6.9e-12  Score=136.75  Aligned_cols=166  Identities=19%  Similarity=0.260  Sum_probs=113.5

Q ss_pred             cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC-----------ChhhhcccEEEEccCC
Q psy13765         49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR-----------NINAFRRVSCYIQQDD  117 (606)
Q Consensus        49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~-----------~~~~~~~~~~yv~Q~~  117 (606)
                      ..+++++ +.+.+|+.++|+|+||+|||||+++|+|...+ ..|.|.+.|+.-           +...+++.+.+|.+.+
T Consensus       146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~  223 (438)
T PRK07721        146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSA-DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD  223 (438)
T ss_pred             hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCC-CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence            5689999 99999999999999999999999999999776 479999966432           1223566788887654


Q ss_pred             CCCC--------CCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhh
Q psy13765        118 RLQP--------LLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL  189 (606)
Q Consensus       118 ~l~~--------~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL  189 (606)
                      .-..        .+|+.|....-|.+-    .                        +++|.-+.           .|+|+
T Consensus       224 ~~~~~r~~~~~~a~~iAEyfr~~g~~V----l------------------------l~~Dsltr-----------~A~A~  264 (438)
T PRK07721        224 QPALMRIKGAYTATAIAEYFRDQGLNV----M------------------------LMMDSVTR-----------VAMAQ  264 (438)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCcE----E------------------------EEEeChHH-----------HHHHH
Confidence            3210        011222222212110    0                        11222111           11110


Q ss_pred             hcCCcE-EEEeCC--CCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765        190 INNPRV-MFLDEP--TTGLDSQSCSQCIKLLKMISQ--QGR-----TIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT  259 (606)
Q Consensus       190 ~~~P~l-llLDEP--TsgLD~~~~~~i~~~l~~l~~--~g~-----tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~  259 (606)
                         -+| +.+.||  |+|+|+.....+.++++++.+  +|.     ||++.+||.+.   .+||++..+.+|+++..++.
T Consensus       265 ---rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~l  338 (438)
T PRK07721        265 ---REIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQL  338 (438)
T ss_pred             ---HHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccH
Confidence               000 113353  679999999999999999974  575     99999999874   68999999999999999987


Q ss_pred             hH
Q psy13765        260 DQ  261 (606)
Q Consensus       260 ~~  261 (606)
                      .+
T Consensus       339 a~  340 (438)
T PRK07721        339 AN  340 (438)
T ss_pred             HH
Confidence            65

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=99.35  E-value=5.8e-12  Score=127.94  Aligned_cols=171  Identities=15%  Similarity=0.187  Sum_probs=104.8

Q ss_pred             EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCcc
Q psy13765         57 GRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDE  136 (606)
Q Consensus        57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~  136 (606)
                      ..+.+||.++|+||+|+|||||++.|++..... .+++.             .+.++-++..    .++.++.+.+.-.-
T Consensus        11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~-------------~~v~vI~er~----~ev~el~~~I~~~~   72 (249)
T cd01128          11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVY-------------LIVLLIDERP----EEVTDMQRSVKGEV   72 (249)
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeE-------------EEEEEccCCC----ccHHHHHHHhccEE
Confidence            368899999999999999999999999875432 11111             0111111110    12333322220000


Q ss_pred             ccCCccccCChHHHHH-----HHHHHHHh--cCCcccccCCCC--------------CCCCchh--------hhHHHHHH
Q psy13765        137 SQNTRSSQLSGGQKKR-----LSIALELI--NNPRVMFLDEPT--------------TSNPNDQ--------KKRLSIAL  187 (606)
Q Consensus       137 ~~~~~~~~lSgGqrqR-----v~ia~~L~--~~~~~~~~de~~--------------~~~s~g~--------~krl~IA~  187 (606)
                      ...+  .+.|-++|-+     .+.|..+.  ...-++++||.+              ..+|||+        +||+++|+
T Consensus        73 v~~~--~~~~~~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar  150 (249)
T cd01128          73 IAST--FDEPPERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAAR  150 (249)
T ss_pred             EEec--CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhc
Confidence            0000  0012233222     11222221  112223444443              3468999        99999999


Q ss_pred             hhhcCCcEEEEeCCCCCCCHHHHHH-HHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765        188 ELINNPRVMFLDEPTTGLDSQSCSQ-CIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC  253 (606)
Q Consensus       188 aL~~~P~lllLDEPTsgLD~~~~~~-i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~  253 (606)
                      ++..+++|.+|  ||+.+|+.+... ++  +..+...+.|.|+.+|+...  ...+|.|.+|++|+.
T Consensus       151 ~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~--~~~~paI~vl~s~sr  211 (249)
T cd01128         151 NIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAE--RRIFPAIDILKSGTR  211 (249)
T ss_pred             CCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhh--CCCCCeEEEcCCCCc
Confidence            99999999999  999999755544 54  55555567899999999764  489999999999987

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>KOG0062|consensus

Probab=99.34  E-value=1.1e-12  Score=140.51  Aligned_cols=187  Identities=25%  Similarity=0.336  Sum_probs=137.2

Q ss_pred             CCceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh
Q psy13765         24 ADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI  103 (606)
Q Consensus        24 ~~~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~  103 (606)
                      -.+..+++.+|++.|..+      +-+++.+++..++.-+-.+++|+||+||||++|++.|-..| ..|.+.+++     
T Consensus       358 ~~~p~l~i~~V~f~y~p~------~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~-~rgi~~~~~-----  425 (582)
T KOG0062|consen  358 LSPPNLRISYVAFEYTPS------EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP-TRGIVGRHP-----  425 (582)
T ss_pred             CCCCeeEEEeeeccCCCc------chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc-ccceeeecc-----
Confidence            345679999999887432      22799999999999999999999999999999999997665 478777654     


Q ss_pred             hhhcccEEEEccCCCC---------------CCCCcHHHH---HHHcCCcc-ccCCccccCChHHHHHHHHHHHHhcCCc
Q psy13765        104 NAFRRVSCYIQQDDRL---------------QPLLTIENV---MSLLGLDE-SQNTRSSQLSGGQKKRLSIALELINNPR  164 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l---------------~~~ltv~~~---l~~~gl~~-~~~~~~~~lSgGqrqRv~ia~~L~~~~~  164 (606)
                         |.+++|-.|...-               +|..|-+++   +..+|++. .+...+.+||||||-||+          
T Consensus       426 ---r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrva----------  492 (582)
T KOG0062|consen  426 ---RLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVA----------  492 (582)
T ss_pred             ---cceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHH----------
Confidence               4567777775432               333333333   22344433 222234455555555555          


Q ss_pred             ccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcce
Q psy13765        165 VMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQ  244 (606)
Q Consensus       165 ~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~  244 (606)
                                          +|.+...+|-+|+|||||+.||..+-..+.+.|+..   +-.||+++||.+ .+-..|+.
T Consensus       493 --------------------fA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E  548 (582)
T KOG0062|consen  493 --------------------FAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKE  548 (582)
T ss_pred             --------------------HHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCce
Confidence                                555555569999999999999999999998888766   347999999954 68899999


Q ss_pred             eeeecCCcEEE-EcCh
Q psy13765        245 VYLLSGGQCLY-QGAT  259 (606)
Q Consensus       245 v~~L~~G~~~~-~G~~  259 (606)
                      +++.++|++.- .|..
T Consensus       549 ~Wvve~g~vt~ieg~~  564 (582)
T KOG0062|consen  549 LWVVEDGKVTPIEGGI  564 (582)
T ss_pred             eEEEcCCcEEeeeccH
Confidence            99999999864 3444

>TIGR01291 nodJ ABC-2 type transporter, NodJ family

Probab=99.32  E-value=2.2e-10  Score=117.06  Aligned_cols=234  Identities=13%  Similarity=0.091  Sum_probs=154.9

Q ss_pred             HHHHHHHHHHHhhcC-hhHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhH-----HHHHHHHHHHHHHHHHHHHh-hhh
Q psy13765        335 LGVLLSRGLLKVKRD-STLTHLRIIVNIFVALMLGVLFQNSGEYASSVLIN-----YNLLFSILIHHVMTSMMLNI-LTF  407 (606)
Q Consensus       335 ~~~l~~R~~~~~~Rd-~~~~~~r~~~~i~~all~G~~f~~~~~~~~~~~~~-----~g~lf~~~~~~~~~~~~~~~-~~f  407 (606)
                      ...+.+|+++..+|+ |......+++.++.-+++|..+-....+..+ .+.     -|++-+.++..   +++... ..+
T Consensus         7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g-~~y~~f~~pg~l~~~~~~~---~~~~~~~~~~   82 (253)
T TIGR01291         7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDG-VSYAAFLAAGMVATSAMTA---STFETIYATF   82 (253)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCC-CCHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            445669999999999 9988888888888888888887543111111 111     12222221111   111111 111


Q ss_pred             hh--hhhhheecccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHhHH
Q psy13765        408 PM--EMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMV  485 (606)
Q Consensus       408 ~~--er~v~~rE~~~~~Y~~~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i  485 (606)
                      ..  |+..++|-+..- -++..+.++|.+.+.-..++..++...+.+++ |..+. ......+...++..++..++|.++
T Consensus        83 ~~~r~~g~~~~l~~~P-v~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~-g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~  159 (253)
T TIGR01291        83 ARMRVTRTWEAMLYTP-ITVGDIVLGEVAWAATKASLAGTIIGVVTATL-GYIEW-WSLIYILPVIALTGLAFASLSMLV  159 (253)
T ss_pred             HHHHHcccHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            11  222333322222 37789999999999877777776655555433 44333 344444455566777778899999


Q ss_pred             hccccch-hHHHHHHHHHHHHHHhcccccCCCCcccccccccccCHHHHHHHHHHHHHhcCCCcccccCCCccccCChhH
Q psy13765        486 GAVFNVV-NGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDELYCHYKEPKK  564 (606)
Q Consensus       486 ~~~~~~~-~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~iS~~~y~~eal~~n~~~~~~~~~~c~~~~c~~~~g~~  564 (606)
                      |+..++. .+..+..++..|++.+||.+.|.+.+|+|++|+.+++|+.|+.|++-...++  +                 
T Consensus       160 a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g--~-----------------  220 (253)
T TIGR01291       160 AALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLG--G-----------------  220 (253)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhC--C-----------------
Confidence            9987654 4677788899999999999999999999999999999999999986544332  1                 


Q ss_pred             HHhhcCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhh
Q psy13765        565 FLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWR  601 (606)
Q Consensus       565 ~L~~~~~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~  601 (606)
                             +..+.|.++++++++.+++..++...+|++
T Consensus       221 -------~~~~~~~~~~~l~~~~vv~~~la~~~fr~~  250 (253)
T TIGR01291       221 -------PGTQVGLHLGALCLYAVVPFFISAALLRRR  250 (253)
T ss_pred             -------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                   011245678889999888888887776654

Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.

>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family

Probab=99.32  E-value=1.8e-10  Score=115.85  Aligned_cols=221  Identities=13%  Similarity=0.043  Sum_probs=141.8

Q ss_pred             hcChhHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHh-HHHHHHHHHHHHHHHHHHHHhhhhhhhh--hhheecccCCCc
Q psy13765        347 KRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLI-NYNLLFSILIHHVMTSMMLNILTFPMEM--SILIKEHFNRWY  423 (606)
Q Consensus       347 ~Rd~~~~~~r~~~~i~~all~G~~f~~~~~~~~~~~~-~~g~lf~~~~~~~~~~~~~~~~~f~~er--~v~~rE~~~~~Y  423 (606)
                      +|||.....-+.+.+++-++++.+|-+... ...... -.+.+-+...   +.+.+........||  ..+.|=+..- .
T Consensus         2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~er~~G~l~rl~~~P-~   76 (232)
T TIGR00025         2 LRVGAQIILTMFIPITFMVGLNLLPGGSVT-HNRGATFIPVLMALAAI---STAFTGQAIAVARDRRYGALKRLGATP-L   76 (232)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhcCCccC-CcchhHhhHHHHHHHHH---HHHHHHHHHHHHHHHHhCHHHHHhcCC-C
Confidence            699999999899888887888877765211 111111 1121111111   111111122222333  3444444443 5


Q ss_pred             chHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHhcccc----chhHHHHHH
Q psy13765        424 SLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFN----VVNGTFVGP  499 (606)
Q Consensus       424 ~~~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~~~----~~~a~~~~~  499 (606)
                      +...|+++|.+...+..++..+++. +++++.|.+..... +.+++...+....+.+++.+++++..    .+.+..+.+
T Consensus        77 ~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~  154 (232)
T TIGR00025        77 PRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGA-LTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVAN  154 (232)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            7899999999988888777655554 55667788765333 33344444555666667777766642    223466778


Q ss_pred             HHHHHHHHhcccccCCCCcccccccccccCHHHHHHHHHHHHHhcCCCcccccCCCccccCChhHHHhhcCCCCCChhhh
Q psy13765        500 VLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDELYCHYKEPKKFLQTVSQPSDNFWSS  579 (606)
Q Consensus       500 ~~~~~~~lf~G~~i~~~~ip~~~~W~~~iS~~~y~~eal~~n~~~~~~~~~~c~~~~c~~~~g~~~L~~~~~~~~~~w~~  579 (606)
                      +...+++++||.+.|.+.+|.|++|+.+++|++|+.+++-....+  +                       -+....|.+
T Consensus       155 ~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~--~-----------------------~~~~~~~~~  209 (232)
T TIGR00025       155 LVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATV--S-----------------------VDTFGAVRD  209 (232)
T ss_pred             HHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcC--C-----------------------CChhhHHHH
Confidence            888999999999999999999999999999999999987543222  1                       012345778


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy13765        580 SVTLVFILIVMKLIAYFFLS  599 (606)
Q Consensus       580 ~~il~~~~~~~~~~~~~~L~  599 (606)
                      +++++++.+++..++...++
T Consensus       210 ~~~l~~~~~v~~~la~~~~~  229 (232)
T TIGR00025       210 LVVVLAFWVALAALAAIRLR  229 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            88888888887777766554

This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.

>KOG0063|consensus

Probab=99.31  E-value=3e-12  Score=134.35  Aligned_cols=83  Identities=24%  Similarity=0.334  Sum_probs=66.4

Q ss_pred             ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceee
Q psy13765        167 FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVY  246 (606)
Q Consensus       167 ~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~  246 (606)
                      ++|.....+||||-||.+||++.+.+.++.++|||.+-||...+..-...++.+....+=||++.||.+ .+--+.|-+.
T Consensus       206 ~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLs-VLDylSDFiC  284 (592)
T KOG0063|consen  206 LLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLS-VLDYLSDFIC  284 (592)
T ss_pred             HHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeech-HHHhhhccee
Confidence            344445555555555555666666679999999999999999999999999999888899999999987 4556788888


Q ss_pred             eecC
Q psy13765        247 LLSG  250 (606)
Q Consensus       247 ~L~~  250 (606)
                      .|.+
T Consensus       285 cLYG  288 (592)
T KOG0063|consen  285 CLYG  288 (592)
T ss_pred             EEec
Confidence            8863

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=99.31  E-value=2.3e-12  Score=150.16  Aligned_cols=148  Identities=18%  Similarity=0.269  Sum_probs=94.7

Q ss_pred             eEEEe-CCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCC-CCCCCCcHHHHHHHcC
Q psy13765         56 CGRFP-SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDD-RLQPLLTIENVMSLLG  133 (606)
Q Consensus        56 s~~i~-~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~-~l~~~ltv~~~l~~~g  133 (606)
                      ++.+. .++++.|.|||++||||+|+.++...--...|                  .+||-+. .-.+  -++++...+|
T Consensus       320 di~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~G------------------~~vpa~~~~~i~--~~~~i~~~ig  379 (782)
T PRK00409        320 DISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSG------------------LPIPANEPSEIP--VFKEIFADIG  379 (782)
T ss_pred             eeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHhC------------------CCcccCCCcccc--ccceEEEecC
Confidence            33443 46789999999999999999986431000011                  1222211 0000  0112222334


Q ss_pred             CccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHH
Q psy13765        134 LDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQC  213 (606)
Q Consensus       134 l~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i  213 (606)
                      -........+.+|+|++|++.|++++ .+                              |+++++|||++|+|+.....+
T Consensus       380 ~~~si~~~lStfS~~m~~~~~Il~~~-~~------------------------------~sLvLlDE~~~GtDp~eg~al  428 (782)
T PRK00409        380 DEQSIEQSLSTFSGHMTNIVRILEKA-DK------------------------------NSLVLFDELGAGTDPDEGAAL  428 (782)
T ss_pred             CccchhhchhHHHHHHHHHHHHHHhC-Cc------------------------------CcEEEecCCCCCCCHHHHHHH
Confidence            44444456677999999999876665 33                              999999999999999999888


Q ss_pred             HH-HHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEE
Q psy13765        214 IK-LLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ  256 (606)
Q Consensus       214 ~~-~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~  256 (606)
                      .. +++.+.+.|.++|++||++.. ....+|+..+. ++.+.+.
T Consensus       429 a~aile~l~~~~~~vIitTH~~el-~~~~~~~~~v~-~~~~~~d  470 (782)
T PRK00409        429 AISILEYLRKRGAKIIATTHYKEL-KALMYNREGVE-NASVEFD  470 (782)
T ss_pred             HHHHHHHHHHCCCEEEEECChHHH-HHHHhcCCCeE-EEEEEEe
Confidence            64 677787789999999999653 33344544433 4555553

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=99.30  E-value=4.7e-12  Score=126.21  Aligned_cols=135  Identities=16%  Similarity=0.142  Sum_probs=86.6

Q ss_pred             ccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHH
Q psy13765         48 PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIEN  127 (606)
Q Consensus        48 ~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~  127 (606)
                      ++.+-+|+++..++|++++|.||||+||||+++.+++..--...|      .....+.  ..++++   +.++..+    
T Consensus        16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G------~~vpa~~--~~i~~~---~~i~~~~----   80 (218)
T cd03286          16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMG------MDVPAKS--MRLSLV---DRIFTRI----   80 (218)
T ss_pred             CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcC------CccCccc--cEeccc---cEEEEec----
Confidence            356889999999999999999999999999999998852110011      1111111  111111   1111111    


Q ss_pred             HHHHcCCccccCCccccCC--hHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCC
Q psy13765        128 VMSLLGLDESQNTRSSQLS--GGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL  205 (606)
Q Consensus       128 ~l~~~gl~~~~~~~~~~lS--gGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgL  205 (606)
                           +-   .+....++|  ..|-++++-.....                              ++|+++++|||.+|+
T Consensus        81 -----~~---~d~~~~~~StF~~e~~~~~~il~~~------------------------------~~~sLvLlDE~~~Gt  122 (218)
T cd03286          81 -----GA---RDDIMKGESTFMVELSETANILRHA------------------------------TPDSLVILDELGRGT  122 (218)
T ss_pred             -----Cc---ccccccCcchHHHHHHHHHHHHHhC------------------------------CCCeEEEEecccCCC
Confidence                 10   111112233  23455554332222                              349999999999999


Q ss_pred             CHHHHHHHHHH-HHHHHhC-CCEEEEEecCCc
Q psy13765        206 DSQSCSQCIKL-LKMISQQ-GRTIICTIHQPS  235 (606)
Q Consensus       206 D~~~~~~i~~~-l~~l~~~-g~tii~~~H~~~  235 (606)
                      |+.....+... ++.+.+. +.++|++||+++
T Consensus       123 ~~~dg~~la~ail~~L~~~~~~~~i~~TH~~e  154 (218)
T cd03286         123 STHDGYAIAHAVLEYLVKKVKCLTLFSTHYHS  154 (218)
T ss_pred             CchHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence            99999988888 7888776 899999999965

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein

Probab=99.29  E-value=6e-10  Score=113.58  Aligned_cols=236  Identities=15%  Similarity=0.131  Sum_probs=155.7

Q ss_pred             HHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhcCC-CC------Ch---HHHHhHHHHHHHHHHHHHHHHHH
Q psy13765        332 SNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNS-GE------YA---SSVLINYNLLFSILIHHVMTSMM  401 (606)
Q Consensus       332 ~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~all~G~~f~~~-~~------~~---~~~~~~~g~lf~~~~~~~~~~~~  401 (606)
                      +++++.+++|+++...|||.....-+++.++.-+++|.+|-.. +.      +.   -..+--.|++-+...+..+.+..
T Consensus         1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~~~   80 (253)
T TIGR03861         1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQSSL   80 (253)
T ss_pred             ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4688999999999999999999999999999999999988432 11      00   11112223322222222221111


Q ss_pred             HHhhhhhhhhhhheecccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHH
Q psy13765        402 LNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSV  481 (606)
Q Consensus       402 ~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~~~f~~f~~~~~l~~~~~~~~  481 (606)
                        ......|+..+.+=+... .+...+.++|.+...-..++..+++..+.+. .|.+.+...+.......++..++..++
T Consensus        81 --~~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~l  156 (253)
T TIGR03861        81 --SMVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGAL  156 (253)
T ss_pred             --HhHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence              111122222333323333 5778899999999988888776665555443 366555444444444556667778899


Q ss_pred             HhHHhccccc-hhHHHHHHHHHHHHHHhcccccCCCCc---ccccccccccCHHHHHHHHHHHHHhcCCCcccccCCCcc
Q psy13765        482 GYMVGAVFNV-VNGTFVGPVLVVPMMMFSGFGVSINDI---PKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDELYC  557 (606)
Q Consensus       482 g~~i~~~~~~-~~a~~~~~~~~~~~~lf~G~~i~~~~i---p~~~~W~~~iS~~~y~~eal~~n~~~~~~~~~~c~~~~c  557 (606)
                      |.++|++.+. ..+..+.++++.+++.+||.+.|.+.+   |+|++|+.++||+.|..|++-...++  +          
T Consensus       157 gl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~~~g--~----------  224 (253)
T TIGR03861       157 GLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFALYG--Q----------  224 (253)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHHHhC--C----------
Confidence            9999998754 446667778888999999999998766   88999999999999999977432221  0          


Q ss_pred             ccCChhHHHhhcCCCCCChhhhHHHHHHHHHHHHHHHHHHHHh
Q psy13765        558 HYKEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSW  600 (606)
Q Consensus       558 ~~~~g~~~L~~~~~~~~~~w~~~~il~~~~~~~~~~~~~~L~~  600 (606)
                                       .-|..+++++++.+++..++....|+
T Consensus       225 -----------------~~~~~~~~~~~~~~v~~~~~~~~fr~  250 (253)
T TIGR03861       225 -----------------LNLPALGWTLGATTLFTLLAFWGFDP  250 (253)
T ss_pred             -----------------cchhHHHHHHHHHHHHHHHHHHHhhc
Confidence                             01556677778888777777666543

Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.

>TIGR00611 recf recF protein

Probab=99.26  E-value=1.1e-11  Score=132.98  Aligned_cols=61  Identities=23%  Similarity=0.328  Sum_probs=55.6

Q ss_pred             CCCCCchhhhHHHHHHhhhc---------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765        172 TTSNPNDQKKRLSIALELIN---------NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS  235 (606)
Q Consensus       172 ~~~~s~g~~krl~IA~aL~~---------~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~  235 (606)
                      ...+|.||+|++.||.+|+.         +|+||+||||+++||+..+..+++.|++.   |.++++|+|++.
T Consensus       273 ~~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~  342 (365)
T TIGR00611       273 EDFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD  342 (365)
T ss_pred             HHhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence            34589999999999999999         99999999999999999999999999753   779999999865

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=99.23  E-value=4.3e-11  Score=125.73  Aligned_cols=142  Identities=17%  Similarity=0.149  Sum_probs=94.1

Q ss_pred             eeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCcc-CChhhhcccEEEEccCCC-CCCCCcHHHHHHHc
Q psy13765         55 LCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINAFRRVSCYIQQDDR-LQPLLTIENVMSLL  132 (606)
Q Consensus        55 vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~-~~~~~~~~~~~yv~Q~~~-l~~~ltv~~~l~~~  132 (606)
                      +++.+++|+.++|.||+|||||||+++|++..++ ..|.+.++... ..... +..+..+.+... -....+.++     
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~-~~~iv~ied~~El~~~~-~~~~~l~~~~~~~~~~~~~~~~-----  209 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPK-DERIITIEDTREIFLPH-PNYVHLFYSKGGQGLAKVTPKD-----  209 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCc-cccEEEEcCccccCCCC-CCEEEEEecCCCCCcCccCHHH-----
Confidence            4567889999999999999999999999999865 46777775421 11111 122333222110 000111111     


Q ss_pred             CCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHH
Q psy13765        133 GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQ  212 (606)
Q Consensus       133 gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~  212 (606)
                                           .                              ++.+|-.+|+++++|||.+       .+
T Consensus       210 ---------------------~------------------------------l~~~Lr~~pd~ii~gE~r~-------~e  231 (308)
T TIGR02788       210 ---------------------L------------------------------LQSCLRMRPDRIILGELRG-------DE  231 (308)
T ss_pred             ---------------------H------------------------------HHHHhcCCCCeEEEeccCC-------HH
Confidence                                 1                              2334445599999999996       34


Q ss_pred             HHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765        213 CIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       213 i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                      +.+.++.+...+.+++.|+|..+.  .+..||+..|..|++...|.+.+..
T Consensus       232 ~~~~l~a~~~g~~~~i~T~Ha~~~--~~~~~Rl~~l~~~~~~~~g~~~~~~  280 (308)
T TIGR02788       232 AFDFIRAVNTGHPGSITTLHAGSP--EEAFEQLALMVKSSQAGLGLDFAYI  280 (308)
T ss_pred             HHHHHHHHhcCCCeEEEEEeCCCH--HHHHHHHHHHhhccccccCCCHHHH
Confidence            566677665323467999999873  4679999999999988888877665

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.22  E-value=1.9e-11  Score=107.74  Aligned_cols=72  Identities=15%  Similarity=0.069  Sum_probs=56.4

Q ss_pred             cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhhhcccEEEEccCCCCCCCCcH
Q psy13765         49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INAFRRVSCYIQQDDRLQPLLTI  125 (606)
Q Consensus        49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~~~~~~~yv~Q~~~l~~~ltv  125 (606)
                      +.+|+++++++++||+++|+||||||||||++++.       +|++.++|.+..   ..+.++..++++|+ .++  .|+
T Consensus         2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-------~G~i~~~g~di~~~~~~~~~~~~~~~~q~-lf~--~ti   71 (107)
T cd00820           2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-------KRKHRLVGDDNVEIREDSKDELIGRNPEL-GLE--IRL   71 (107)
T ss_pred             ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-------CCeEEEeeEeHHHhhhhhcCCEEEEechh-cch--hhH
Confidence            46899999999999999999999999999999985       688999997642   34456667888887 322  355


Q ss_pred             HHHHH
Q psy13765        126 ENVMS  130 (606)
Q Consensus       126 ~~~l~  130 (606)
                      .+.+.
T Consensus        72 ~~Ni~   76 (107)
T cd00820          72 RLNIF   76 (107)
T ss_pred             Hhhce
Confidence            54443

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=99.21  E-value=3.5e-11  Score=116.28  Aligned_cols=149  Identities=15%  Similarity=0.094  Sum_probs=90.3

Q ss_pred             EEEECCCCCCHHHHHHHHhCC-CCCCCccEEEECCccCChhhhcccE-EEEccCCCCCCCCcHHHHHHHcCCccccCCcc
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY-RSNGVTGQILTNGHSRNINAFRRVS-CYIQQDDRLQPLLTIENVMSLLGLDESQNTRS  142 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~-~~~~~~G~I~~~G~~~~~~~~~~~~-~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~  142 (606)
                      +.|.||+|+|||||.--++-. ...+ ..-+++.-. .+...+.+.. ++         ....++. ...|.....+..+
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~~~g-~~v~~~s~e-~~~~~~~~~~~~~---------g~~~~~l-~~~g~l~~~d~~~   69 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLARG-EPGLYVTLE-ESPEELIENAESL---------GWDLERL-EDEGLLAIVDADP   69 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHCC-CcEEEEECC-CCHHHHHHHHHHc---------CCChHHH-HhcCCeEEEecCc
Confidence            679999999999988654321 1211 122333221 1222221110 00         1112222 2334445556666


Q ss_pred             ccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCC---HHHHHHHHHHHHH
Q psy13765        143 SQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLD---SQSCSQCIKLLKM  219 (606)
Q Consensus       143 ~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD---~~~~~~i~~~l~~  219 (606)
                      ..+|+|++|-..   +++                     ....+.+...+|+++++||||+.+|   ......+.+.++.
T Consensus        70 ~~~s~~~~~~~~---~~~---------------------~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~  125 (187)
T cd01124          70 DEIGPAESSLRL---ELI---------------------QRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFA  125 (187)
T ss_pred             cccchhhhhhhH---HHH---------------------HHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHH
Confidence            678888876100   000                     0011222334699999999999999   8888888899999


Q ss_pred             HHhCCCEEEEEecCCch--------HHHhhcceeeeec
Q psy13765        220 ISQQGRTIICTIHQPSA--------TLFQMFDQVYLLS  249 (606)
Q Consensus       220 l~~~g~tii~~~H~~~~--------~i~~~~D~v~~L~  249 (606)
                      +++.|.|+|+++|+...        .+..++|.++.|+
T Consensus       126 l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~  163 (187)
T cd01124         126 LKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR  163 (187)
T ss_pred             HHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence            98889999999998653        2567899999886

A related protein is found in archaea.

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=99.21  E-value=1.5e-10  Score=136.31  Aligned_cols=94  Identities=16%  Similarity=0.144  Sum_probs=75.8

Q ss_pred             cccCCCCCCCCchhhhHHHHHHh----------------------hhcCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHh
Q psy13765        166 MFLDEPTTSNPNDQKKRLSIALE----------------------LINNPRVMFLDEPTTGL-DSQSCSQCIKLLKMISQ  222 (606)
Q Consensus       166 ~~~de~~~~~s~g~~krl~IA~a----------------------L~~~P~lllLDEPTsgL-D~~~~~~i~~~l~~l~~  222 (606)
                      .++|.+...+|.|+.+.+++...                      +..+|+++++|||+.+| |+..+..+.+.++++++
T Consensus       604 ~lfd~~~d~l~~~~~~~fdl~~Ll~~~~~~~~~vl~yl~~ri~~~l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK  683 (818)
T PRK13830        604 QLLDAEEDGLALGAFQTFEIEELMNMGERNLVPVLTYLFRRIEKRLTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK  683 (818)
T ss_pred             eecCCCccccCccceEEEEhhhhhcCchhHHHHHHHHHHHHHHHhcCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH
Confidence            36788888888765554444322                      35799999999999999 79999999999999998


Q ss_pred             CCCEEEEEecCCchHH--------HhhcceeeeecCCcEEEEcCh
Q psy13765        223 QGRTIICTIHQPSATL--------FQMFDQVYLLSGGQCLYQGAT  259 (606)
Q Consensus       223 ~g~tii~~~H~~~~~i--------~~~~D~v~~L~~G~~~~~G~~  259 (606)
                      .|.+++++||+++...        .+.||+.++|.+|++...|+.
T Consensus       684 ~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~  728 (818)
T PRK13830        684 ANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR  728 (818)
T ss_pred             cCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence            8999999999987532        368999999999988766643

>TIGR00634 recN DNA repair protein RecN

Probab=99.21  E-value=2e-11  Score=138.30  Aligned_cols=76  Identities=17%  Similarity=0.345  Sum_probs=68.9

Q ss_pred             CCCchhhhHHHHHHhhhcC----CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec
Q psy13765        174 SNPNDQKKRLSIALELINN----PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS  249 (606)
Q Consensus       174 ~~s~g~~krl~IA~aL~~~----P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~  249 (606)
                      .+||||++|+.||++++..    |+++++||||+|||+.++..+.+.|+++++ ++|||++||+|.  +...||++++++
T Consensus       440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l~  516 (563)
T TIGR00634       440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKVE  516 (563)
T ss_pred             hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEEE
Confidence            4799999999999999985    699999999999999999999999999975 899999999975  346899999998


Q ss_pred             CCc
Q psy13765        250 GGQ  252 (606)
Q Consensus       250 ~G~  252 (606)
                      +|.
T Consensus       517 k~~  519 (563)
T TIGR00634       517 KEG  519 (563)
T ss_pred             Ecc
Confidence            764

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.20  E-value=7.5e-11  Score=117.09  Aligned_cols=52  Identities=25%  Similarity=0.387  Sum_probs=46.6

Q ss_pred             CCCCCCch--hhhHHHHHHhhhcCCcEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q psy13765        171 PTTSNPND--QKKRLSIALELINNPRVMFLDEPT-----TGLDSQSCSQCIKLLKMISQ  222 (606)
Q Consensus       171 ~~~~~s~g--~~krl~IA~aL~~~P~lllLDEPT-----sgLD~~~~~~i~~~l~~l~~  222 (606)
                      +++..+|+  |+++++||++++.+|+++++||||     +|||+.+...+.+.++++++
T Consensus       147 e~Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~  205 (215)
T PTZ00132        147 DISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN  205 (215)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence            44555555  888999999999999999999999     99999999999999999875

>TIGR00618 sbcc exonuclease SbcC

Probab=99.19  E-value=4.8e-11  Score=144.39  Aligned_cols=90  Identities=23%  Similarity=0.244  Sum_probs=71.0

Q ss_pred             ccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhh----cCCcEEEEeCCCCCCCHHHHHH
Q psy13765        137 SQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELI----NNPRVMFLDEPTTGLDSQSCSQ  212 (606)
Q Consensus       137 ~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~----~~P~lllLDEPTsgLD~~~~~~  212 (606)
                      ..++.++.|||||++|+++|++|+..                        ..+.    .+|++||+||||+|||+.+...
T Consensus       943 ~~~r~~~~lSgGe~~~~~la~al~ls------------------------~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~  998 (1042)
T TIGR00618       943 GSVRPSATLSGGETFLASLSLALALA------------------------DLLSTSGGTVLDSLFIDEGFGSLDEDSLDR  998 (1042)
T ss_pred             CCcCCcccCCHHHHHHHHHHHHHHHH------------------------HHHhhccCCCCCeEEecCCCCCCCHHHHHH
Confidence            34455667777777777776666531                        0000    1599999999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCC
Q psy13765        213 CIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGG  251 (606)
Q Consensus       213 i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G  251 (606)
                      +++.|+++++.|++|++|||++. ....++|+|.+++.|
T Consensus       999 ~~~~l~~l~~~g~~i~iisH~~~-~~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618       999 AIGILDAIREGSKMIGIISHVPE-FRERIPHRILVKKTN 1036 (1042)
T ss_pred             HHHHHHHHHhCCCEEEEEeCcHH-HHHhhCCEEEEEECC
Confidence            99999999888999999999976 477899999999743

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=99.19  E-value=5.9e-11  Score=119.53  Aligned_cols=151  Identities=21%  Similarity=0.235  Sum_probs=87.7

Q ss_pred             EEeCCeEEEEECCCCCCHHHH-HHHHhCCCCCCCccEEEECCccCChhhhcc---cEEEEccCCCCCCCCcHHHHHHHcC
Q psy13765         58 RFPSNQLIAIMGPSGAGKSSL-LDVLSGYRSNGVTGQILTNGHSRNINAFRR---VSCYIQQDDRLQPLLTIENVMSLLG  133 (606)
Q Consensus        58 ~i~~Ge~~aIiGpsGaGKSTL-L~~L~g~~~~~~~G~I~~~G~~~~~~~~~~---~~~yv~Q~~~l~~~ltv~~~l~~~g  133 (606)
                      -+++|++++|.|||||||||| ++.+++...++ ...+++..... ..++.+   ..|+-           +++.... +
T Consensus        20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-~~~~yi~~e~~-~~~~~~~~~~~g~~-----------~~~~~~~-~   85 (230)
T PRK08533         20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNG-YSVSYVSTQLT-TTEFIKQMMSLGYD-----------INKKLIS-G   85 (230)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEeCCCC-HHHHHHHHHHhCCc-----------hHHHhhc-C
Confidence            389999999999999999999 78988865433 34445543321 112111   11210           1111110 0


Q ss_pred             CccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCC----CHHH
Q psy13765        134 LDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL----DSQS  209 (606)
Q Consensus       134 l~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgL----D~~~  209 (606)
                      .-...+.. ..+|+++.++..+.+. +..                         +=..+|+++++||||+++    |+..
T Consensus        86 ~l~~~~~~-~~~~~~~~~~~~l~~i-l~~-------------------------~~~~~~~~lVIDe~t~~l~~~~d~~~  138 (230)
T PRK08533         86 KLLYIPVY-PLLSGNSEKRKFLKKL-MNT-------------------------RRFYEKDVIIIDSLSSLISNDASEVA  138 (230)
T ss_pred             cEEEEEec-ccccChHHHHHHHHHH-HHH-------------------------HHhcCCCEEEEECccHHhcCCcchHH
Confidence            00000111 1245555444333221 111                         001359999999999999    7788


Q ss_pred             HHHHHHHHHHHHhCCCEEEEEecCCch------HHHhhcceeeeec
Q psy13765        210 CSQCIKLLKMISQQGRTIICTIHQPSA------TLFQMFDQVYLLS  249 (606)
Q Consensus       210 ~~~i~~~l~~l~~~g~tii~~~H~~~~------~i~~~~D~v~~L~  249 (606)
                      ..++.+.+++++++|.|+++++|+...      .+..++|-++.|+
T Consensus       139 ~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~  184 (230)
T PRK08533        139 VNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE  184 (230)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence            888999999998888888776654321      1234567787776

>PRK13695 putative NTPase; Provisional

Probab=99.17  E-value=4.5e-11  Score=114.96  Aligned_cols=65  Identities=14%  Similarity=0.295  Sum_probs=48.4

Q ss_pred             hhhcCCcEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        188 ELINNPRVMFLDEP--TTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       188 aL~~~P~lllLDEP--TsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      ..+.+|+++++|||  +.++|    ..+.+.+.++.+.|.++|+++|+.  .+...+|++..+.+|++.+.-+
T Consensus        92 ~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~~~i~~~~~  158 (174)
T PRK13695         92 RALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPGGRVYELTP  158 (174)
T ss_pred             hccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCCcEEEEEcc
Confidence            33344999999995  44444    345666666666799999999983  3557899999999999877643

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.15  E-value=5e-11  Score=135.16  Aligned_cols=80  Identities=20%  Similarity=0.305  Sum_probs=70.4

Q ss_pred             CCCCCCCchhhhHHHHHHhhh----------cCCcEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHH
Q psy13765        170 EPTTSNPNDQKKRLSIALELI----------NNPRVMFLDEPT-TGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATL  238 (606)
Q Consensus       170 e~~~~~s~g~~krl~IA~aL~----------~~P~lllLDEPT-sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i  238 (606)
                      .+...+|+|||||+.||++|+          .+|++++||||| ++||+.+...+.+.|+++  +|.|||++||++.  +
T Consensus       464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~  539 (562)
T PHA02562        464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--D  539 (562)
T ss_pred             cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--c
Confidence            355789999999999999987          599999999998 789999999999999998  5899999999965  4


Q ss_pred             HhhcceeeeecC-CcE
Q psy13765        239 FQMFDQVYLLSG-GQC  253 (606)
Q Consensus       239 ~~~~D~v~~L~~-G~~  253 (606)
                      ...+|++++|.+ |+.
T Consensus       540 ~~~~d~~~~l~~~~~~  555 (562)
T PHA02562        540 PQKFDRHLKMEKVGRF  555 (562)
T ss_pred             hhhhhcEEEEEEECCe
Confidence            578999999975 654

>PRK10869 recombination and repair protein; Provisional

Probab=99.15  E-value=6.9e-11  Score=133.18  Aligned_cols=74  Identities=19%  Similarity=0.424  Sum_probs=67.8

Q ss_pred             CCchhhhHHHHHHhhhc----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765        175 NPNDQKKRLSIALELIN----NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG  250 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~----~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~  250 (606)
                      +||||++|++||++++.    +|+++++|||++|||..++..+.+.|+++++ +.+|||+||+|.  +...+|+.+.+.+
T Consensus       431 lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v~k  507 (553)
T PRK10869        431 ASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFVSK  507 (553)
T ss_pred             CCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEEec
Confidence            69999999999999997    6899999999999999999999999999975 699999999986  4589999999986


Q ss_pred             C
Q psy13765        251 G  251 (606)
Q Consensus       251 G  251 (606)
                      +
T Consensus       508 ~  508 (553)
T PRK10869        508 E  508 (553)
T ss_pred             c
Confidence            4

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=99.15  E-value=1.2e-10  Score=108.80  Aligned_cols=53  Identities=26%  Similarity=0.322  Sum_probs=39.0

Q ss_pred             HHHhhhcCCcEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q psy13765        185 IALELINNPRVMFLDEPTT----------GLDSQSCSQCIKLLKMISQQGRTIICTIHQPSAT  237 (606)
Q Consensus       185 IA~aL~~~P~lllLDEPTs----------gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~  237 (606)
                      .+.+...+|+++++|||++          +.|......+.+++....+.+.|+|+++|.+...
T Consensus        78 ~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~  140 (165)
T cd01120          78 ERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD  140 (165)
T ss_pred             HHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence            3444445599999999994          5555656677777666666699999999987643

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK15066 inner membrane transport permease; Provisional

Probab=99.13  E-value=1.4e-08  Score=103.94  Aligned_cols=242  Identities=15%  Similarity=0.166  Sum_probs=146.8

Q ss_pred             hHHHHHHHHHHHHHHhhcChhHH-HHHHHHHHHHHHHHHHhhcCC-CC--Ch-HHHHhHHHHHHHHHHHHHHHHHHHHhh
Q psy13765        331 YSNQLGVLLSRGLLKVKRDSTLT-HLRIIVNIFVALMLGVLFQNS-GE--YA-SSVLINYNLLFSILIHHVMTSMMLNIL  405 (606)
Q Consensus       331 ~~~q~~~l~~R~~~~~~Rd~~~~-~~r~~~~i~~all~G~~f~~~-~~--~~-~~~~~~~g~lf~~~~~~~~~~~~~~~~  405 (606)
                      .++-++.+.+|+.+...||+... ..-+++.++..+++|.++-.. +.  +. --..--.|.+-+.....+...   ...
T Consensus         6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~~~---~~~   82 (257)
T PRK15066          6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSYSN---VAS   82 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence            36778899999999999998653 333444555666666655321 11  11 111111233322222222221   112


Q ss_pred             hhhhhh--hhheecccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHh
Q psy13765        406 TFPMEM--SILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGY  483 (606)
Q Consensus       406 ~f~~er--~v~~rE~~~~~Y~~~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~~~f~~f~~~~~l~~~~~~~~g~  483 (606)
                      .+..++  ....|=... -.+...+.+++.+...-..++..++...+.+...|.+..  ....+....++........|.
T Consensus        83 ~i~~~~~~~~~~~l~vt-p~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl  159 (257)
T PRK15066         83 SFFSAKFQRNIEELLVS-PVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGL  159 (257)
T ss_pred             HHHHHHHhhhHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHH
Confidence            222222  111111112 257778999999988777676666665555544466543  222233333333333334477


Q ss_pred             HHhccccc-hhHHHHHHHHHHHHHHhcccccCCCCcccccccccccCHHHHHHHHHHHHHhcCCCcccccCCCccccCCh
Q psy13765        484 MVGAVFNV-VNGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDELYCHYKEP  562 (606)
Q Consensus       484 ~i~~~~~~-~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~iS~~~y~~eal~~n~~~~~~~~~~c~~~~c~~~~g  562 (606)
                      ++|...+. .....+.++++.|++..||.+.|.+++|+|++|+.++||+.|..|++=...++  .               
T Consensus       160 ~~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~g--~---------------  222 (257)
T PRK15066        160 INAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFLG--I---------------  222 (257)
T ss_pred             HHHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHcC--C---------------
Confidence            77776554 44666778888999999999999999999999999999999999987533322  0               


Q ss_pred             hHHHhhcCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy13765        563 KKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIKV  604 (606)
Q Consensus       563 ~~~L~~~~~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~~~~  604 (606)
                               .....|.++++++++.+++.+++...+|++.+-
T Consensus       223 ---------~~~~~~~~l~~l~~~~~v~~~la~~~~~r~~~~  255 (257)
T PRK15066        223 ---------SDVPLWLAFAVLLVFIVVLYLLAWYLLERGRGL  255 (257)
T ss_pred             ---------CCccHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence                     112357788999999999988888887765543

>PRK03918 chromosome segregation protein; Provisional

Probab=99.12  E-value=1.3e-10  Score=138.59  Aligned_cols=85  Identities=28%  Similarity=0.391  Sum_probs=74.0

Q ss_pred             CCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q psy13765        139 NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK  218 (606)
Q Consensus       139 ~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~  218 (606)
                      +..+..|||||++++++|+                        |+++|++++.+|+++++||||+|||+..+..+.++|+
T Consensus       783 ~~~~~~lS~G~~~~~~la~------------------------rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~  838 (880)
T PRK03918        783 ERPLTFLSGGERIALGLAF------------------------RLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIME  838 (880)
T ss_pred             cCChhhCCHhHHHHHHHHH------------------------HHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHH
Confidence            4556778999999888775                        3457888888999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCchHHHhhcceeeeec
Q psy13765        219 MISQQGRTIICTIHQPSATLFQMFDQVYLLS  249 (606)
Q Consensus       219 ~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~  249 (606)
                      .+++.+.|||++||++.  +...||++++|.
T Consensus       839 ~~~~~~~~iiiith~~~--~~~~~d~~~~l~  867 (880)
T PRK03918        839 RYLRKIPQVIIVSHDEE--LKDAADYVIRVS  867 (880)
T ss_pred             HHHhcCCEEEEEECCHH--HHHhCCeEEEEE
Confidence            98777889999999964  568999999997

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.11  E-value=4.7e-10  Score=126.20  Aligned_cols=97  Identities=22%  Similarity=0.411  Sum_probs=82.0

Q ss_pred             cccCCCCCCCCchhhhHHHHHHhhhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcc
Q psy13765        166 MFLDEPTTSNPNDQKKRLSIALELINNP--RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFD  243 (606)
Q Consensus       166 ~~~de~~~~~s~g~~krl~IA~aL~~~P--~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D  243 (606)
                      +-+|.....|||||.||+.+|+.+-++=  -+.+||||+.||-+..-.++++.|++|++.|-|+|++.||++  ..+.+|
T Consensus       473 LtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed--ti~~AD  550 (935)
T COG0178         473 LTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED--TIRAAD  550 (935)
T ss_pred             ccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH--HHhhcC
Confidence            3556777777777777777777776553  367999999999999999999999999999999999999954  568999


Q ss_pred             eeeee------cCCcEEEEcChhHHHH
Q psy13765        244 QVYLL------SGGQCLYQGATDQLVN  264 (606)
Q Consensus       244 ~v~~L------~~G~~~~~G~~~~~~~  264 (606)
                      +|+=|      .+|++++.|+++++++
T Consensus       551 ~iIDiGPgAG~~GGeIv~~Gtp~~i~~  577 (935)
T COG0178         551 HIIDIGPGAGEHGGEIVAEGTPEELLA  577 (935)
T ss_pred             EEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence            99998      3689999999999885

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=99.08  E-value=4.9e-10  Score=121.52  Aligned_cols=158  Identities=18%  Similarity=0.182  Sum_probs=105.5

Q ss_pred             cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHH
Q psy13765         49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENV  128 (606)
Q Consensus        49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~  128 (606)
                      .++++++ +.+.+||.++|+|+||+|||||+++|+|...+ ..|.|.+.|+...                     ++.+.
T Consensus       144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~-~~gvI~~iGerg~---------------------ev~e~  200 (432)
T PRK06793        144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKA-DINVISLVGERGR---------------------EVKDF  200 (432)
T ss_pred             CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCC-CeEEEEeCCCCcc---------------------cHHHH
Confidence            4578885 99999999999999999999999999998765 4788877775421                     22222


Q ss_pred             HH-Hc---CCccc-cCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCC
Q psy13765        129 MS-LL---GLDES-QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTT  203 (606)
Q Consensus       129 l~-~~---gl~~~-~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTs  203 (606)
                      ++ .+   |+... .=....+-|.|+|+|+..+...++.   .+.|                    -.++-++++||||+
T Consensus       201 ~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAE---yfr~--------------------~G~~VLlilDslTr  257 (432)
T PRK06793        201 IRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAE---YFRD--------------------QGNNVLLMMDSVTR  257 (432)
T ss_pred             HHHHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHH---HHHH--------------------cCCcEEEEecchHH
Confidence            21 11   22110 0012345788999988765544421   0000                    13489999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765        204 GLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT  259 (606)
Q Consensus       204 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~  259 (606)
                      +.|+.  .++-..+.+.-..|.+..+.+|. +    ++++|.-...+|.+...+..
T Consensus       258 ~a~A~--reisl~~~e~p~~G~~~~~~s~l-~----~L~ERag~~~~GSiT~~~tv  306 (432)
T PRK06793        258 FADAR--RSVDIAVKELPIGGKTLLMESYM-K----KLLERSGKTQKGSITGIYTV  306 (432)
T ss_pred             HHHHH--HHHHHHhcCCCCCCeeeeeeccc-h----hHHHHhccCCCcceEEEEEE
Confidence            99996  55555566655458888888884 2    34556555678988777654

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=99.06  E-value=3.3e-10  Score=112.26  Aligned_cols=61  Identities=28%  Similarity=0.423  Sum_probs=48.3

Q ss_pred             CCchhhhHHHHHHhhhcCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765        175 NPNDQKKRLSIALELINNP---RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS  235 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~~P---~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~  235 (606)
                      +|-|+||.+.++..+...+   .++++|||-++|+|..+..+++.|+++++.+.-+|+|||.|.
T Consensus       237 ~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~  300 (303)
T PF13304_consen  237 LSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF  300 (303)
T ss_dssp             --HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred             CCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence            3556666655555555555   899999999999999999999999888776889999999975

>COG3910 Predicted ATPase [General function prediction only]

Probab=99.05  E-value=7.6e-10  Score=105.39  Aligned_cols=43  Identities=26%  Similarity=0.489  Sum_probs=41.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765        193 PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS  235 (606)
Q Consensus       193 P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~  235 (606)
                      .-+.+||||-++|.+.-+.+++..|+++++.|.-+|+.||.|-
T Consensus       147 ~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi  189 (233)
T COG3910         147 QGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI  189 (233)
T ss_pred             CceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence            6899999999999999999999999999999999999999975

>PRK01156 chromosome segregation protein; Provisional

Probab=99.04  E-value=6.4e-10  Score=132.94  Aligned_cols=83  Identities=27%  Similarity=0.418  Sum_probs=70.7

Q ss_pred             ccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy13765        141 RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMI  220 (606)
Q Consensus       141 ~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l  220 (606)
                      .+..|||||++|+++|.                        |++||++++.+|++++|||||+|||+.....+.++++..
T Consensus       798 ~~~~lS~G~~~~~~la~------------------------rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~  853 (895)
T PRK01156        798 GIDSLSGGEKTAVAFAL------------------------RVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYS  853 (895)
T ss_pred             ccccCCHhHHHHHHHHH------------------------HHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence            45679999999998775                        556899999999999999999999999999999999865


Q ss_pred             H-hC-C-CEEEEEecCCchHHHhhcceeeeec
Q psy13765        221 S-QQ-G-RTIICTIHQPSATLFQMFDQVYLLS  249 (606)
Q Consensus       221 ~-~~-g-~tii~~~H~~~~~i~~~~D~v~~L~  249 (606)
                      . .. | .|+|++||++.  ....||+++.+.
T Consensus       854 ~~~~~~~~~ii~ish~~~--~~~~~d~ii~~~  883 (895)
T PRK01156        854 LKDSSDIPQVIMISHHRE--LLSVADVAYEVK  883 (895)
T ss_pred             HHhcCCCCeEEEEECchH--HHHhcCeEEEEE
Confidence            4 33 3 48999999975  347999999996

>cd01131 PilT Pilus retraction ATPase PilT

Probab=99.04  E-value=1.1e-09  Score=107.79  Aligned_cols=120  Identities=24%  Similarity=0.405  Sum_probs=73.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccc
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSS  143 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~  143 (606)
                      ++.|.||+||||||+++.|.+...+...|.|...+.+... ......+++.|.+.              |.+      ..
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~-~~~~~~~~i~q~~v--------------g~~------~~   61 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEF-VHESKRSLINQREV--------------GLD------TL   61 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccc-cccCccceeeeccc--------------CCC------cc
Confidence            7899999999999999999887654335676655443321 11111223333211              000      00


Q ss_pred             cCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy13765        144 QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ  223 (606)
Q Consensus       144 ~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~  223 (606)
                      .++.      +                              |+++|..+|+++++|||.   |..+...+    .+.+..
T Consensus        62 ~~~~------~------------------------------i~~aLr~~pd~ii~gEir---d~e~~~~~----l~~a~~   98 (198)
T cd01131          62 SFEN------A------------------------------LKAALRQDPDVILVGEMR---DLETIRLA----LTAAET   98 (198)
T ss_pred             CHHH------H------------------------------HHHHhcCCcCEEEEcCCC---CHHHHHHH----HHHHHc
Confidence            1110      1                              444555569999999996   55543333    344567


Q ss_pred             CCEEEEEecCCchHHHhhcceeeeec
Q psy13765        224 GRTIICTIHQPSATLFQMFDQVYLLS  249 (606)
Q Consensus       224 g~tii~~~H~~~~~i~~~~D~v~~L~  249 (606)
                      |..++.|+|.++.  .+..||++.+.
T Consensus        99 G~~v~~t~Ha~~~--~~~~~Rl~~l~  122 (198)
T cd01131          99 GHLVMSTLHTNSA--AKTIDRIIDVF  122 (198)
T ss_pred             CCEEEEEecCCcH--HHHHhHHHhhc
Confidence            9999999999864  46789987774

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=98.94  E-value=1.7e-09  Score=130.67  Aligned_cols=80  Identities=23%  Similarity=0.212  Sum_probs=59.8

Q ss_pred             CCCCCCCchhhhHHHHHHhhhc--------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh
Q psy13765        170 EPTTSNPNDQKKRLSIALELIN--------NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQM  241 (606)
Q Consensus       170 e~~~~~s~g~~krl~IA~aL~~--------~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~  241 (606)
                      .++..|||||+++++||+||+.        +|++||+||||+|||+.+...+++.|..+++.|+||++|||... ..-++
T Consensus       945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~-l~~~i 1023 (1047)
T PRK10246        945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEA-MKERI 1023 (1047)
T ss_pred             CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHH-HHHhc
Confidence            3444455555555555555553        69999999999999999999999999999988999999999743 34455


Q ss_pred             cceeeeecC
Q psy13765        242 FDQVYLLSG  250 (606)
Q Consensus       242 ~D~v~~L~~  250 (606)
                      -.+|.|-..
T Consensus      1024 ~~qi~V~k~ 1032 (1047)
T PRK10246       1024 PVQIKVKKI 1032 (1047)
T ss_pred             cceEEEEEC
Confidence            555555543

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=98.93  E-value=5.2e-09  Score=105.47  Aligned_cols=157  Identities=20%  Similarity=0.211  Sum_probs=87.6

Q ss_pred             cceee-eEEEeCCeEEEEECCCCCCHHHHHHHHh-CCCCCCCccEEEECCccCChhhhcc---cEEEEccCCCCCCCCcH
Q psy13765         51 VLKNL-CGRFPSNQLIAIMGPSGAGKSSLLDVLS-GYRSNGVTGQILTNGHSRNINAFRR---VSCYIQQDDRLQPLLTI  125 (606)
Q Consensus        51 iL~~v-s~~i~~Ge~~aIiGpsGaGKSTLL~~L~-g~~~~~~~G~I~~~G~~~~~~~~~~---~~~yv~Q~~~l~~~ltv  125 (606)
                      -|+.+ .+-+++|+++.|.|++|+|||||...++ +....  .+.+.+-..+.+..++.+   ..++           .+
T Consensus        13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~~~~~~~~~~~~g~-----------~~   79 (234)
T PRK06067         13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENTSKSYLKQMESVKI-----------DI   79 (234)
T ss_pred             HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCCHHHHHHHHHHCCC-----------Ch
Confidence            45554 5569999999999999999999998874 22121  233333332222222211   1111           01


Q ss_pred             HHHHHHcCCccccC---CccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCC
Q psy13765        126 ENVMSLLGLDESQN---TRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPT  202 (606)
Q Consensus       126 ~~~l~~~gl~~~~~---~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPT  202 (606)
                      ++.+.. |.....+   ......+.++++.+....+++..                            .+|+++++||||
T Consensus        80 ~~~~~~-g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~----------------------------~~~~~iviDs~t  130 (234)
T PRK06067         80 SDFFLW-GYLRIFPLNTEGFEWNSTLANKLLELIIEFIKS----------------------------KREDVIIIDSLT  130 (234)
T ss_pred             hHHHhC-CCceEEeccccccccCcchHHHHHHHHHHHHHh----------------------------cCCCEEEEecHH
Confidence            111000 0000000   01112344555555554444432                            159999999999


Q ss_pred             CC---CCHHHHHHHHHHHHHHHhCCCEEEEEecCCch------HHHhhcceeeeec
Q psy13765        203 TG---LDSQSCSQCIKLLKMISQQGRTIICTIHQPSA------TLFQMFDQVYLLS  249 (606)
Q Consensus       203 sg---LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~------~i~~~~D~v~~L~  249 (606)
                      +.   .|.....++++.++.++++|.|+++++|+...      .+..++|-++.|+
T Consensus       131 ~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~  186 (234)
T PRK06067        131 IFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLR  186 (234)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence            65   44555555666677777789999999998653      1345667776665

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.84  E-value=1.7e-08  Score=107.68  Aligned_cols=125  Identities=26%  Similarity=0.392  Sum_probs=77.9

Q ss_pred             EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCcccc
Q psy13765         59 FPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQ  138 (606)
Q Consensus        59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~  138 (606)
                      .+++.++.|.||+||||||++++|.+.......|.|...+.+.... .......+.|.+.              |..   
T Consensus       119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~-~~~~~~~i~q~ev--------------g~~---  180 (343)
T TIGR01420       119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV-HRNKRSLINQREV--------------GLD---  180 (343)
T ss_pred             hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh-ccCccceEEcccc--------------CCC---
Confidence            3578899999999999999999998865533357776655443211 1111112222110              000   


Q ss_pred             CCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q psy13765        139 NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK  218 (606)
Q Consensus       139 ~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~  218 (606)
                           ..+-   . -+                              ++++|-.+|+++++||+.   |+.++...++   
T Consensus       181 -----~~~~---~-~~------------------------------l~~~lr~~pd~i~vgEir---d~~~~~~~l~---  215 (343)
T TIGR01420       181 -----TLSF---A-NA------------------------------LRAALREDPDVILIGEMR---DLETVELALT---  215 (343)
T ss_pred             -----CcCH---H-HH------------------------------HHHhhccCCCEEEEeCCC---CHHHHHHHHH---
Confidence                 0010   0 01                              344555569999999997   8887765444   


Q ss_pred             HHHhCCCEEEEEecCCchHHHhhcceeeeec
Q psy13765        219 MISQQGRTIICTIHQPSATLFQMFDQVYLLS  249 (606)
Q Consensus       219 ~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~  249 (606)
                       .+..|.+++.|+|..+.  ....||++-|-
T Consensus       216 -aa~tGh~v~~T~Ha~~~--~~~~~Rl~~~~  243 (343)
T TIGR01420       216 -AAETGHLVFGTLHTNSA--AQTIERIIDVF  243 (343)
T ss_pred             -HHHcCCcEEEEEcCCCH--HHHHHHHHHhc
Confidence             35679999999999764  36788887663

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]

Probab=98.82  E-value=2.2e-07  Score=94.39  Aligned_cols=153  Identities=20%  Similarity=0.294  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHhc-ccc-chhHHHHHHHHHH
Q psy13765        426 KAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGA-VFN-VVNGTFVGPVLVV  503 (606)
Q Consensus       426 ~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~-~~~-~~~a~~~~~~~~~  503 (606)
                      ..+++++.+...-...+...+...+..+..|. .....+..+..+..+......++|.++++ ..+ ...+..+..++..
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~  209 (286)
T COG0842         131 LFILLGKIVPYLVVASLIAGLVLLVIAFLLGV-PFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLIL  209 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            56677777777766666666666666666662 23345666666777777788888886662 333 4447778888899


Q ss_pred             HHHHhcccccCCCCcccccccccccCHHHHHHHHHHHHHhcCCCcccccCCCccccCChhHHHhhcCCCCCChhhhHHHH
Q psy13765        504 PMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDELYCHYKEPKKFLQTVSQPSDNFWSSSVTL  583 (606)
Q Consensus       504 ~~~lf~G~~i~~~~ip~~~~W~~~iS~~~y~~eal~~n~~~~~~~~~~c~~~~c~~~~g~~~L~~~~~~~~~~w~~~~il  583 (606)
                      ++..++|.+.|.+.+|.|++|+.+++|.+|+.+++-....+...                         ..+.|.+++++
T Consensus       210 ~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~l  264 (286)
T COG0842         210 PLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWR-------------------------NDGIWISLLIL  264 (286)
T ss_pred             HHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCc-------------------------hhhHHHHHHHH
Confidence            99999999999999999999999999999999988655443110                         12278889999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhc
Q psy13765        584 VFILIVMKLIAYFFLSWRIKV  604 (606)
Q Consensus       584 ~~~~~~~~~~~~~~L~~~~~~  604 (606)
                      +++.+++.+++...++++.++
T Consensus       265 ~~~~~v~~~~~~~~~~~~~~~  285 (286)
T COG0842         265 LLFAVVFLLLGLLLLRRRRKL  285 (286)
T ss_pred             HHHHHHHHHHHHHHHHHhhhc
Confidence            999999999999998877664

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.82  E-value=1.3e-07  Score=84.77  Aligned_cols=117  Identities=27%  Similarity=0.320  Sum_probs=72.0

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhh-hcccEEEEccCCCCCCCCcHHHHHHHcCCccccC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA-FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQN  139 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~  139 (606)
                      +|+.+.|.||+|+||||+++.|+........+-+.++........ ....                         .....
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~   55 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL-------------------------LIIVG   55 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH-------------------------hhhhh
Confidence            467899999999999999999999865421245666554321110 0000                         01111


Q ss_pred             CccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHH----
Q psy13765        140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIK----  215 (606)
Q Consensus       140 ~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~----  215 (606)
                      .......+++..+..++.+-..+                              |+++++||+..-.+.........    
T Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~viiiDei~~~~~~~~~~~~~~~~~~  105 (148)
T smart00382       56 GKKASGSGELRLRLALALARKLK------------------------------PDVLILDEITSLLDAEQEALLLLLEEL  105 (148)
T ss_pred             ccCCCCCHHHHHHHHHHHHHhcC------------------------------CCEEEEECCcccCCHHHHHHHHhhhhh
Confidence            11223455555554444333333                              89999999999999888877664    


Q ss_pred             --HHHHHHhCCCEEEEEec
Q psy13765        216 --LLKMISQQGRTIICTIH  232 (606)
Q Consensus       216 --~l~~l~~~g~tii~~~H  232 (606)
                        ........+..+|+++|
T Consensus       106 ~~~~~~~~~~~~~~i~~~~  124 (148)
T smart00382      106 RLLLLLKSEKNLTVILTTN  124 (148)
T ss_pred             HHHHHHHhcCCCEEEEEeC
Confidence              22223335788999998

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR00606 rad50 rad50

Probab=98.80  E-value=6.9e-09  Score=128.33  Aligned_cols=69  Identities=25%  Similarity=0.257  Sum_probs=56.6

Q ss_pred             CCCCchhhh------HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEecCCchHHHhh
Q psy13765        173 TSNPNDQKK------RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-----QGRTIICTIHQPSATLFQM  241 (606)
Q Consensus       173 ~~~s~g~~k------rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-----~g~tii~~~H~~~~~i~~~  241 (606)
                      +.+|+|||+      |++||++++.+|++|+|||||+|||+.+...+.+.|..+..     .|.|||++||++. .+..+
T Consensus      1198 ~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~-~~~~~ 1276 (1311)
T TIGR00606      1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED-FVELL 1276 (1311)
T ss_pred             CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH-HHHHH
Confidence            456666666      77778888888999999999999999999999999988742     3789999999976 45555


Q ss_pred             c
Q psy13765        242 F  242 (606)
Q Consensus       242 ~  242 (606)
                      |
T Consensus      1277 ~ 1277 (1311)
T TIGR00606      1277 G 1277 (1311)
T ss_pred             h
Confidence            4

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.80  E-value=4e-09  Score=114.49  Aligned_cols=52  Identities=23%  Similarity=0.360  Sum_probs=44.6

Q ss_pred             cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC
Q psy13765         49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN  102 (606)
Q Consensus        49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~  102 (606)
                      +.+|++||+++++||+++|+|||||||||||+  +|+..+...|+|.++|.+..
T Consensus        19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~   70 (504)
T TIGR03238        19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSF   70 (504)
T ss_pred             HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECC
Confidence            46899999999999999999999999999999  67666543348999998653

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=98.80  E-value=1.2e-07  Score=112.45  Aligned_cols=69  Identities=17%  Similarity=0.210  Sum_probs=55.3

Q ss_pred             HHHhhhcCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh--hcceeeeecCCcEE
Q psy13765        185 IALELINNPRVMFLDEPTTGL-DSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQ--MFDQVYLLSGGQCL  254 (606)
Q Consensus       185 IA~aL~~~P~lllLDEPTsgL-D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~--~~D~v~~L~~G~~~  254 (606)
                      |++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+++. +.+  .++.++-..+.++.
T Consensus       680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d-~~~s~i~~~ilen~~t~I~  751 (852)
T PRK13891        680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSD-AANSGILDVIVESTATKIF  751 (852)
T ss_pred             HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HhhCchHHHHHHcCCccee
Confidence            678889999999999999999 7999999999999999889999999999875 433  33444333444444

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.78  E-value=7.7e-09  Score=126.54  Aligned_cols=75  Identities=23%  Similarity=0.325  Sum_probs=57.7

Q ss_pred             CCCCCchhhhHHHHHHhh----hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeee
Q psy13765        172 TTSNPNDQKKRLSIALEL----INNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYL  247 (606)
Q Consensus       172 ~~~~s~g~~krl~IA~aL----~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~  247 (606)
                      ...+|||||+|++||+++    ...|++++|||||+|||+.+...+.++|+.+++ +.++|++||++..  ...||+++.
T Consensus      1087 ~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~--~~~~d~~~~ 1163 (1179)
T TIGR02168      1087 LSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGT--MEVADQLYG 1163 (1179)
T ss_pred             ccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhH--HHHhhhHee
Confidence            334444444444455554    245899999999999999999999999999865 4789999999773  478999986


Q ss_pred             ec
Q psy13765        248 LS  249 (606)
Q Consensus       248 L~  249 (606)
                      +.
T Consensus      1164 ~~ 1165 (1179)
T TIGR02168      1164 VT 1165 (1179)
T ss_pred             ee
Confidence            64

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=98.76  E-value=2.7e-08  Score=100.66  Aligned_cols=45  Identities=27%  Similarity=0.389  Sum_probs=38.9

Q ss_pred             hcCCcEEEEeCCCC------CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCc
Q psy13765        190 INNPRVMFLDEPTT------GLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPS  235 (606)
Q Consensus       190 ~~~P~lllLDEPTs------gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~  235 (606)
                      ..+|+++++| |++      .+|+.....+++.|++++++ |.||+++.|...
T Consensus       109 ~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K  160 (239)
T cd01125         109 IRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK  160 (239)
T ss_pred             hcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence            5789999999 765      47999999999999999875 999999999864

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.72  E-value=1e-07  Score=92.75  Aligned_cols=131  Identities=19%  Similarity=0.218  Sum_probs=83.1

Q ss_pred             cceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCC--CCCCCcHHHH
Q psy13765         51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDR--LQPLLTIENV  128 (606)
Q Consensus        51 iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~--l~~~ltv~~~  128 (606)
                      ..+=+.+.+++|+.++|+||||||||||+++|+|+.++ ..|.|.+++...-....+..++++.|.+.  ..+..+..+.
T Consensus        14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~-~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (186)
T cd01130          14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPP-DERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADL   92 (186)
T ss_pred             HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCC-CCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHH
Confidence            34445567899999999999999999999999999875 58999997743211112344566555432  2333343332


Q ss_pred             HHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHH
Q psy13765        129 MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQ  208 (606)
Q Consensus       129 l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~  208 (606)
                      ++                                                        .++-.+|+.++++|--.   +.
T Consensus        93 l~--------------------------------------------------------~~lR~~pd~i~igEir~---~e  113 (186)
T cd01130          93 LR--------------------------------------------------------SALRMRPDRIIVGEVRG---GE  113 (186)
T ss_pred             HH--------------------------------------------------------HHhccCCCEEEEEccCc---HH
Confidence            21                                                        12223399999999753   33


Q ss_pred             HHHHHHHHHHHHHhCCCE-EEEEecCCchHHHhhcceeeee
Q psy13765        209 SCSQCIKLLKMISQQGRT-IICTIHQPSATLFQMFDQVYLL  248 (606)
Q Consensus       209 ~~~~i~~~l~~l~~~g~t-ii~~~H~~~~~i~~~~D~v~~L  248 (606)
                       +   .+.++ .+..|.. ++.|.|-.+.  .+..+|+.-+
T Consensus       114 -a---~~~~~-a~~tGh~g~~~T~Ha~s~--~~~~~Rl~~~  147 (186)
T cd01130         114 -A---LDLLQ-AMNTGHPGGMTTIHANSA--EEALTRLELL  147 (186)
T ss_pred             -H---HHHHH-HHhcCCCCceeeecCCCH--HHHHHHHHHH
Confidence             2   23343 3456877 8999998653  3555666543

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=98.72  E-value=1.3e-07  Score=103.46  Aligned_cols=169  Identities=22%  Similarity=0.265  Sum_probs=107.9

Q ss_pred             cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-hh----------hhcccEEEEccCC
Q psy13765         49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-IN----------AFRRVSCYIQQDD  117 (606)
Q Consensus        49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~-~~----------~~~~~~~yv~Q~~  117 (606)
                      ..+++++ +.+.+||.++|+|+||+|||||+++|+|...+ ..|.+...|..-+ ..          .+++.+.++.+.+
T Consensus       151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~-~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d  228 (440)
T TIGR01026       151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEA-DVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSD  228 (440)
T ss_pred             eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCC-CEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCC
Confidence            5689999 99999999999999999999999999998765 3566666554211 11          1222233333322


Q ss_pred             CCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHH-----HHHHHhc-CCccc-ccCCCCCCCCchhhhHHHHHHhhh
Q psy13765        118 RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLS-----IALELIN-NPRVM-FLDEPTTSNPNDQKKRLSIALELI  190 (606)
Q Consensus       118 ~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~-----ia~~L~~-~~~~~-~~de~~~~~s~g~~krl~IA~aL~  190 (606)
                      .                           |-++|.+..     +|.-+.. .-+|+ ++|.-+..   =|.+| +|+    
T Consensus       229 ~---------------------------~p~~r~~~~~~a~t~AE~frd~G~~Vll~~DslTr~---A~A~R-Eis----  273 (440)
T TIGR01026       229 Q---------------------------SPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRF---AMAQR-EIG----  273 (440)
T ss_pred             C---------------------------CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHH---HHHHH-HHH----
Confidence            2                           223333221     2222211 11222 33433321   00011 111    


Q ss_pred             cCCcEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCC-------EEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765        191 NNPRVMFLDEP--TTGLDSQSCSQCIKLLKMISQQGR-------TIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ  261 (606)
Q Consensus       191 ~~P~lllLDEP--TsgLD~~~~~~i~~~l~~l~~~g~-------tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~  261 (606)
                           +.+.||  +.|+|+.....+-+++.+....+.       ||++..||..+   .++|++.-+.+|+++...+..+
T Consensus       274 -----l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~d---pi~d~~~~i~dG~ivLsr~la~  345 (440)
T TIGR01026       274 -----LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNE---PIADSVRGILDGHIVLSRALAQ  345 (440)
T ss_pred             -----HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCc---chhhhhccccceEEEEecchhh
Confidence                 235665  459999999999999999887667       88889999753   5789999999999999998765


Q ss_pred             H
Q psy13765        262 L  262 (606)
Q Consensus       262 ~  262 (606)
                      .
T Consensus       346 ~  346 (440)
T TIGR01026       346 R  346 (440)
T ss_pred             C
Confidence            4

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>TIGR01248 drrC daunorubicin resistance protein C

Probab=98.68  E-value=1.3e-07  Score=89.08  Aligned_cols=131  Identities=8%  Similarity=-0.041  Sum_probs=93.6

Q ss_pred             hhhhhhhheecccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCch--HHHHHHHHHHHHHHHHHHHHHhH
Q psy13765        407 FPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMEL--TRFTMFNCTSLLVVFIAQSVGYM  484 (606)
Q Consensus       407 f~~er~v~~rE~~~~~Y~~~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~--~~f~~f~~~~~l~~~~~~~~g~~  484 (606)
                      ...|+-.+.|-+..- .+.+.|+++|.+...-..+++.++..++.+. .|.+...  ...+.++++..+.......++..
T Consensus        14 ~dr~~G~~~~l~~tP-~~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~   91 (152)
T TIGR01248        14 IDREIGLLSRLWVLP-IHRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMA   91 (152)
T ss_pred             HHHHhHHHHHHHhCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334566777776665 5788999999999999999988887777754 4877653  12222333333334444445555


Q ss_pred             HhccccchhHHHHHHHHHHHHHHhcccccCCCCcccccccccccCHHHHHHHHHH
Q psy13765        485 VGAVFNVVNGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYV  539 (606)
Q Consensus       485 i~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~iS~~~y~~eal~  539 (606)
                      ++...+...+.....++..|++..||.+.|.+++|+|++|+.+++|++|+.|++=
T Consensus        92 ~a~~~~~~~~~~~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R  146 (152)
T TIGR01248        92 MALRKEGRFAMEALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA  146 (152)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence            5444455444444566788889999999999999999999999999999999874

The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.

>PRK02224 chromosome segregation protein; Provisional

Probab=98.67  E-value=3.9e-08  Score=117.51  Aligned_cols=67  Identities=28%  Similarity=0.361  Sum_probs=54.7

Q ss_pred             HHHHHHhhhcC-----C-cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEecCCchHHHhhcceeeeecC
Q psy13765        182 RLSIALELINN-----P-RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGR-TIICTIHQPSATLFQMFDQVYLLSG  250 (606)
Q Consensus       182 rl~IA~aL~~~-----P-~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~-tii~~~H~~~~~i~~~~D~v~~L~~  250 (606)
                      |+++|++++.+     | +++++||||++||+.....+.++|+++...|. +||++||++..  ...+|+++.+.+
T Consensus       795 r~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~--~~~ad~~~~~~~  868 (880)
T PRK02224        795 RCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDEL--VGAADDLVRVEK  868 (880)
T ss_pred             HHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHH--HHhcCeeEEeec
Confidence            44566666542     2 67999999999999999999999999987664 89999999763  468999999964

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=98.67  E-value=1.5e-09  Score=120.92  Aligned_cols=159  Identities=17%  Similarity=0.154  Sum_probs=92.1

Q ss_pred             cceee-eEEEeCCeEEEEECCCCCCHHHHHHHH--hCCCCCCCccEEEECCccCChhhh---cccEEEEccCCC----C-
Q psy13765         51 VLKNL-CGRFPSNQLIAIMGPSGAGKSSLLDVL--SGYRSNGVTGQILTNGHSRNINAF---RRVSCYIQQDDR----L-  119 (606)
Q Consensus        51 iL~~v-s~~i~~Ge~~aIiGpsGaGKSTLL~~L--~g~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~~~----l-  119 (606)
                      -|+.+ .+=+.+|..+.|.||+|||||||..-.  .|....+ +.-+++...+. .+++   .+..|+-.++..    + 
T Consensus         9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~g-e~~lyvs~eE~-~~~l~~~~~~~G~~~~~~~~~g~l~   86 (484)
T TIGR02655         9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFD-EPGVFVTFEES-PQDIIKNARSFGWDLQKLVDEGKLF   86 (484)
T ss_pred             hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC-CCEEEEEEecC-HHHHHHHHHHcCCCHHHHhhcCceE
Confidence            46664 567999999999999999999999865  3543322 34455554321 2222   223344333211    0 


Q ss_pred             ----CCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcE
Q psy13765        120 ----QPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRV  195 (606)
Q Consensus       120 ----~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~l  195 (606)
                          .+.....++++.+++++..+.....+|+|++||+.|+..                            .+|..+|+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl----------------------------~aL~~~~~~  138 (484)
T TIGR02655        87 ILDASPDPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSV----------------------------TAVFQQYDA  138 (484)
T ss_pred             EEecCchhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeeh----------------------------hHhhhhcCc
Confidence                000001112233344444444445556666665554410                            233232332


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH-------H-Hhhcceeeeec
Q psy13765        196 MFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSAT-------L-FQMFDQVYLLS  249 (606)
Q Consensus       196 llLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~-------i-~~~~D~v~~L~  249 (606)
                      .          ...+..+.++++.+++.|.|+|+++|++...       + ..++|.|+.|+
T Consensus       139 ~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~  190 (484)
T TIGR02655       139 V----------SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR  190 (484)
T ss_pred             h----------HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence            2          4677888999999988899999999986521       1 45889999986

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.62  E-value=5.3e-08  Score=119.39  Aligned_cols=75  Identities=12%  Similarity=0.139  Sum_probs=60.1

Q ss_pred             CCCCchhhhHHHHHHhhh----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeee
Q psy13765        173 TSNPNDQKKRLSIALELI----NNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL  248 (606)
Q Consensus       173 ~~~s~g~~krl~IA~aL~----~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L  248 (606)
                      ..+|||||+++.||++|+    ..|++++||||++|||+.....+.++|+++++ +.++|++||++.  +...||+++.+
T Consensus      1073 ~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~~~ 1149 (1164)
T TIGR02169      1073 EAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAIGV 1149 (1164)
T ss_pred             hhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeEeE
Confidence            345555555556666665    35899999999999999999999999999865 478999999974  56899999887


Q ss_pred             cC
Q psy13765        249 SG  250 (606)
Q Consensus       249 ~~  250 (606)
                      ..
T Consensus      1150 ~~ 1151 (1164)
T TIGR02169      1150 TM 1151 (1164)
T ss_pred             EE
Confidence            53

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.59  E-value=1.7e-07  Score=112.33  Aligned_cols=85  Identities=28%  Similarity=0.350  Sum_probs=75.4

Q ss_pred             CccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcC--CcEEEEeCCCCCCCHHHHHHHHHHH
Q psy13765        140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINN--PRVMFLDEPTTGLDSQSCSQCIKLL  217 (606)
Q Consensus       140 ~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~--P~lllLDEPTsgLD~~~~~~i~~~l  217 (606)
                      +.+..|||||+-.++||.+|+                        +|..+..+  -++|||||||..||+.+...++++|
T Consensus       811 r~~~~LSGGE~~~~sLalrLA------------------------Ls~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l  866 (908)
T COG0419         811 RPIKTLSGGERFLASLALRLA------------------------LSDLLQGRARLELLFLDEPFGTLDEERLEKLAEIL  866 (908)
T ss_pred             cccccCCchHHHHHHHHHHHH------------------------HHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHH
Confidence            456789999999999887654                        78888888  7999999999999999999999999


Q ss_pred             HHHHhCCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765        218 KMISQQGRTIICTIHQPSATLFQMFDQVYLLSG  250 (606)
Q Consensus       218 ~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~  250 (606)
                      ..+...+.+|++|||++  ++...+|.++.++.
T Consensus       867 ~~i~~~~~qiiIISH~e--el~e~~~~~i~V~k  897 (908)
T COG0419         867 EELLSDGRQIIIISHVE--ELKERADVRIRVKK  897 (908)
T ss_pred             HHHHhcCCeEEEEeChH--HHHHhCCeEEEEEe
Confidence            99998899999999995  46689999999864

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.57  E-value=5.8e-08  Score=96.52  Aligned_cols=182  Identities=18%  Similarity=0.232  Sum_probs=112.0

Q ss_pred             EEEEEeeEEEEecCCc------ccccccccceeeeEEEeCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCcc
Q psy13765         28 EIKFKDLTYTVSTGLG------FKQEPKDVLKNLCGRFPSN-QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS  100 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~------~~~~~~~iL~~vs~~i~~G-e~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~  100 (606)
                      -.-++|+|+++..+.-      ..-++.++++=+|+..+|- -.+-+-|..=.|+..--.+=.|....-..=++ +.+..
T Consensus        17 l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rl-F~~lT   95 (250)
T COG0411          17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRL-FPGLT   95 (250)
T ss_pred             EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccc-cCCCc
Confidence            3457888888865421      1134567888899988863 35557788777777766555554321000011 11110


Q ss_pred             C-Chh--hhcccEE--EEccCCCCCCCC-----cHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCC
Q psy13765        101 R-NIN--AFRRVSC--YIQQDDRLQPLL-----TIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDE  170 (606)
Q Consensus       101 ~-~~~--~~~~~~~--yv~Q~~~l~~~l-----tv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de  170 (606)
                      . +.-  ......+  .....+......     ...++++.+||.+.++++.++||+|||||+.||+||+.+|++++|||
T Consensus        96 VlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDE  175 (250)
T COG0411          96 VLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDE  175 (250)
T ss_pred             HHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecC
Confidence            0 000  0000001  000000000001     13678899999999999999999999999999999999999999999


Q ss_pred             CCCCCCchhhhHHH-HHHhhhcC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy13765        171 PTTSNPNDQKKRLS-IALELINN--PRVMFLDEPTTGLDSQSCSQCIKLLKMISQ  222 (606)
Q Consensus       171 ~~~~~s~g~~krl~-IA~aL~~~--P~lllLDEPTsgLD~~~~~~i~~~l~~l~~  222 (606)
                      |.++++..|+.++. +.+.+-.+  -.+++. |           .-|+++.++++
T Consensus       176 PaAGln~~e~~~l~~~i~~i~~~~g~tillI-E-----------HdM~~Vm~l~d  218 (250)
T COG0411         176 PAAGLNPEETEELAELIRELRDRGGVTILLI-E-----------HDMKLVMGLAD  218 (250)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHhcCCcEEEEE-E-----------eccHHHhhhcc
Confidence            99999999998875 44555543  344444 2           34566666665

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=98.56  E-value=1.9e-06  Score=101.93  Aligned_cols=49  Identities=18%  Similarity=0.246  Sum_probs=44.7

Q ss_pred             hhhcCCcEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q psy13765        188 ELINNPRVMFLDEPTTGLD-SQSCSQCIKLLKMISQQGRTIICTIHQPSA  236 (606)
Q Consensus       188 aL~~~P~lllLDEPTsgLD-~~~~~~i~~~l~~l~~~g~tii~~~H~~~~  236 (606)
                      .+..+|+++++|||...|| +..+..+.+.++++++.|..++++||+++.
T Consensus       638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d  687 (800)
T PRK13898        638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED  687 (800)
T ss_pred             HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            4567999999999999999 888999999999999889999999999864

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=98.56  E-value=8.5e-08  Score=96.17  Aligned_cols=47  Identities=28%  Similarity=0.472  Sum_probs=34.3

Q ss_pred             cceee-eEEEeCCeEEEEECCCCCCHHHHHHHHh--CCCCCCCccEEEECCc
Q psy13765         51 VLKNL-CGRFPSNQLIAIMGPSGAGKSSLLDVLS--GYRSNGVTGQILTNGH   99 (606)
Q Consensus        51 iL~~v-s~~i~~Ge~~aIiGpsGaGKSTLL~~L~--g~~~~~~~G~I~~~G~   99 (606)
                      -|+.+ .+-+++|++++|.||+|+|||||...++  +.. .+ .+.+++...
T Consensus         8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~-~g-~~~~~is~e   57 (229)
T TIGR03881         8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLR-DG-DPVIYVTTE   57 (229)
T ss_pred             hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHh-cC-CeEEEEEcc
Confidence            45553 4579999999999999999999988654  333 22 455666653

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.52  E-value=3.9e-07  Score=99.34  Aligned_cols=87  Identities=20%  Similarity=0.210  Sum_probs=66.7

Q ss_pred             CCCceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECC---c
Q psy13765         23 TADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG---H   99 (606)
Q Consensus        23 ~~~~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G---~   99 (606)
                      ...+..++.++++..+..       +..+++.++ .+.+||.++|+||||+|||||+++|+++..+ ..|.|.+.|   +
T Consensus       134 ~~~p~~~~r~~v~~~l~T-------Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~p-d~gvv~liGergr  204 (450)
T PRK06002        134 ATAPPAMTRARVETGLRT-------GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAF-DTVVIALVGERGR  204 (450)
T ss_pred             CCCCCCeEeecceEEcCC-------CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCC-CeeeeeecccCCc
Confidence            334456788899888743       356888886 8999999999999999999999999998766 478888865   3


Q ss_pred             cCC---h----hhhcccEEEEccCCC
Q psy13765        100 SRN---I----NAFRRVSCYIQQDDR  118 (606)
Q Consensus       100 ~~~---~----~~~~~~~~yv~Q~~~  118 (606)
                      +..   .    ...++.+++|+|.+.
T Consensus       205 ev~e~~~~~l~~~r~rtI~vV~qsd~  230 (450)
T PRK06002        205 EVREFLEDTLADNLKKAVAVVATSDE  230 (450)
T ss_pred             cHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence            321   1    112467999999875

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.48  E-value=2.1e-07  Score=90.81  Aligned_cols=74  Identities=28%  Similarity=0.395  Sum_probs=54.4

Q ss_pred             HHHHHHHcCCc----cccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhh-hHHHHHHhhhcCCcEEEE
Q psy13765        125 IENVMSLLGLD----ESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQK-KRLSIALELINNPRVMFL  198 (606)
Q Consensus       125 v~~~l~~~gl~----~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~-krl~IA~aL~~~P~lllL  198 (606)
                      |+.-|+..+|-    +..++...+|||||+||++|||+|+.+|+|+++|||++.|+.=-- |-=++...|-.+-.|++.
T Consensus       126 Ve~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviV  204 (253)
T COG1117         126 VESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIV  204 (253)
T ss_pred             HHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEE
Confidence            55566666663    344555668999999999999999999999999999999987332 223455555566666665

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.47  E-value=1.1e-07  Score=93.32  Aligned_cols=23  Identities=30%  Similarity=0.523  Sum_probs=21.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      +++|.||||||||||.++|++..
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            57999999999999999999976

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=98.47  E-value=4.6e-07  Score=107.29  Aligned_cols=140  Identities=17%  Similarity=0.210  Sum_probs=83.8

Q ss_pred             cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHH
Q psy13765         49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENV  128 (606)
Q Consensus        49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~  128 (606)
                      ..+-+|+++. +.+.++.|.|||.+||||+|+.++-..-                  +.+...|||=+..-.+  -++.+
T Consensus       595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~i------------------lAq~G~~VPa~~a~i~--~~d~I  653 (854)
T PRK05399        595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVL------------------LAQIGSFVPAESARIG--IVDRI  653 (854)
T ss_pred             ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHH------------------HHhcCCceeccceEec--ccCee
Confidence            3567788877 6788999999999999999999864310                  0001112221111110  01222


Q ss_pred             HHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCC---CCCC
Q psy13765        129 MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP---TTGL  205 (606)
Q Consensus       129 l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEP---TsgL  205 (606)
                      ...+|-   .|....+.|.=+.....++..|-.                            +++++++++|||   |+.+
T Consensus       654 ~triga---~d~i~~g~STF~~E~~~~~~il~~----------------------------at~~sLvllDE~GrGTs~~  702 (854)
T PRK05399        654 FTRIGA---SDDLASGRSTFMVEMTETANILNN----------------------------ATERSLVLLDEIGRGTSTY  702 (854)
T ss_pred             eeccCc---ccccccCcccHHHHHHHHHHHHHh----------------------------CCCCcEEEEecCCCCCCcc
Confidence            222232   223334466555555554444332                            234999999999   8888


Q ss_pred             CHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcce
Q psy13765        206 DSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQ  244 (606)
Q Consensus       206 D~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~  244 (606)
                      |..+  ....+++.+.+. |.+++++||..  ++.+++|+
T Consensus       703 dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~  738 (854)
T PRK05399        703 DGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK  738 (854)
T ss_pred             hhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence            8444  345566666665 58999999993  46677776

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=98.46  E-value=3.3e-07  Score=93.30  Aligned_cols=74  Identities=23%  Similarity=0.348  Sum_probs=59.2

Q ss_pred             HHHHHHHcCCc-cccCCccc-cCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH-HHHHhhhcC-CcEEEE
Q psy13765        125 IENVMSLLGLD-ESQNTRSS-QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL-SIALELINN-PRVMFL  198 (606)
Q Consensus       125 v~~~l~~~gl~-~~~~~~~~-~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl-~IA~aL~~~-P~lllL  198 (606)
                      ++++++.+|+. +..++.+. +||||||||++||++|+.+|+++++|||+++++...++.+ .+.+.+..+ ..+++.
T Consensus       130 ~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~  207 (252)
T CHL00131        130 INEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILI  207 (252)
T ss_pred             HHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            46778889997 46778887 5999999999999999999999999999999998766655 566666543 344443

>PRK13873 conjugal transfer ATPase TrbE; Provisional

Probab=98.45  E-value=2.9e-06  Score=100.46  Aligned_cols=49  Identities=20%  Similarity=0.266  Sum_probs=43.8

Q ss_pred             hhhcCCcEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q psy13765        188 ELINNPRVMFLDEPTTGLD-SQSCSQCIKLLKMISQQGRTIICTIHQPSA  236 (606)
Q Consensus       188 aL~~~P~lllLDEPTsgLD-~~~~~~i~~~l~~l~~~g~tii~~~H~~~~  236 (606)
                      .+-.+|+++++|||+.+|| +..+..+.+.++.++++|.+++++||++..
T Consensus       631 ~~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d  680 (811)
T PRK13873        631 RFDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLAD  680 (811)
T ss_pred             HhcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence            3456899999999999999 788999999999998889999999999863

>TIGR00416 sms DNA repair protein RadA

Probab=98.39  E-value=6.6e-07  Score=98.80  Aligned_cols=144  Identities=19%  Similarity=0.265  Sum_probs=82.9

Q ss_pred             cceee-eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccE-EEECCccCChhhhc---ccEEEEccCCCCCCCCcH
Q psy13765         51 VLKNL-CGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQ-ILTNGHSRNINAFR---RVSCYIQQDDRLQPLLTI  125 (606)
Q Consensus        51 iL~~v-s~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~-I~~~G~~~~~~~~~---~~~~yv~Q~~~l~~~ltv  125 (606)
                      -|+.+ .+=+.+|+++.|.|++|+|||||+..++...... .++ +++.+++.. .+++   +.+++..++-.+....+.
T Consensus        82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~-g~kvlYvs~EEs~-~qi~~ra~rlg~~~~~l~~~~e~~~  159 (454)
T TIGR00416        82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKN-QMKVLYVSGEESL-QQIKMRAIRLGLPEPNLYVLSETNW  159 (454)
T ss_pred             HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEECcCCH-HHHHHHHHHcCCChHHeEEcCCCCH
Confidence            35554 3579999999999999999999999887654321 234 466665321 2221   123322221111111111


Q ss_pred             HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCC-
Q psy13765        126 ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTG-  204 (606)
Q Consensus       126 ~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsg-  204 (606)
                      +++++                           ++ .                            -.+|+++++|.-++= 
T Consensus       160 ~~I~~---------------------------~i-~----------------------------~~~~~~vVIDSIq~l~  183 (454)
T TIGR00416       160 EQICA---------------------------NI-E----------------------------EENPQACVIDSIQTLY  183 (454)
T ss_pred             HHHHH---------------------------HH-H----------------------------hcCCcEEEEecchhhc
Confidence            11100                           00 0                            123888888876541 


Q ss_pred             ---CC-----HHHHHHHHHHHHHHHh-CCCEEEEEecCCch-------HHHhhcceeeeecCCc
Q psy13765        205 ---LD-----SQSCSQCIKLLKMISQ-QGRTIICTIHQPSA-------TLFQMFDQVYLLSGGQ  252 (606)
Q Consensus       205 ---LD-----~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~-------~i~~~~D~v~~L~~G~  252 (606)
                         ++     ....++++..|.++++ .|.|++++.|....       .+..++|.|+.|++++
T Consensus       184 ~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~  247 (454)
T TIGR00416       184 SPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR  247 (454)
T ss_pred             ccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence               11     2234556666777755 59999999996442       1567899999998654

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.33  E-value=8.5e-07  Score=93.16  Aligned_cols=74  Identities=27%  Similarity=0.414  Sum_probs=58.8

Q ss_pred             HHHHHHHcCCc----cccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH-HHHHhhhcCCcEEEE
Q psy13765        125 IENVMSLLGLD----ESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL-SIALELINNPRVMFL  198 (606)
Q Consensus       125 v~~~l~~~gl~----~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl-~IA~aL~~~P~lllL  198 (606)
                      ++++++.+++.    +..+..+.+||||||||++||++|+.+|+++++|||+++++...++.+ .+.+.+..+..+++.
T Consensus       177 ~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiiv  255 (305)
T PRK14264        177 VERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVV  255 (305)
T ss_pred             HHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence            46677778774    455778899999999999999999999999999999999987655554 666676665444443

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.31  E-value=1.6e-06  Score=95.67  Aligned_cols=147  Identities=17%  Similarity=0.280  Sum_probs=80.1

Q ss_pred             ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHH
Q psy13765         50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVM  129 (606)
Q Consensus        50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l  129 (606)
                      .++++.+..+++|++++++||||+||||++..|++..... .|.              +.++++.+|.   ...++.+-+
T Consensus       244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~-~G~--------------~kV~LI~~Dt---~RigA~EQL  305 (484)
T PRK06995        244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMR-HGA--------------SKVALLTTDS---YRIGGHEQL  305 (484)
T ss_pred             hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHh-cCC--------------CeEEEEeCCc---cchhHHHHH
Confidence            3566777778899999999999999999999999865321 221              2456666654   123333222


Q ss_pred             H----HcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhh-HHHHHHhhhcCC-----cEEEEe
Q psy13765        130 S----LLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKK-RLSIALELINNP-----RVMFLD  199 (606)
Q Consensus       130 ~----~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~k-rl~IA~aL~~~P-----~lllLD  199 (606)
                      .    .+|+......     .+   ....+++.-+.+.++++.|.+..    +|+. .+.-..+++.++     .+|+||
T Consensus       306 r~~AeilGVpv~~~~-----~~---~Dl~~aL~~L~d~d~VLIDTaGr----~~~d~~~~e~~~~l~~~~~p~e~~LVLd  373 (484)
T PRK06995        306 RIYGKILGVPVHAVK-----DA---ADLRLALSELRNKHIVLIDTIGM----SQRDRMVSEQIAMLHGAGAPVKRLLLLN  373 (484)
T ss_pred             HHHHHHhCCCeeccC-----Cc---hhHHHHHHhccCCCeEEeCCCCc----ChhhHHHHHHHHHHhccCCCCeeEEEEe
Confidence            2    2232111000     11   11222333334445556666322    1211 122333333343     789999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy13765        200 EPTTGLDSQSCSQCIKLLKMISQQGRTIICTIH  232 (606)
Q Consensus       200 EPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H  232 (606)
                      +++.+      ..+.+.++..+..+.+-++.|+
T Consensus       374 At~~~------~~l~~i~~~f~~~~~~g~IlTK  400 (484)
T PRK06995        374 ATSHG------DTLNEVVQAYRGPGLAGCILTK  400 (484)
T ss_pred             CCCcH------HHHHHHHHHhccCCCCEEEEeC
Confidence            99887      3445555555555666555555

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.31  E-value=7.5e-07  Score=97.00  Aligned_cols=80  Identities=21%  Similarity=0.287  Sum_probs=60.8

Q ss_pred             cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCC--ccEEEECCccCCh---h------hhcccEEEEccCC
Q psy13765         49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGV--TGQILTNGHSRNI---N------AFRRVSCYIQQDD  117 (606)
Q Consensus        49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~--~G~I~~~G~~~~~---~------~~~~~~~yv~Q~~  117 (606)
                      ..+++++ +.+.+||.++|+||||+|||||+++|+|...++.  -|.|-.+|++...   .      ..|..+++++|++
T Consensus       143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~  221 (434)
T PRK07196        143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE  221 (434)
T ss_pred             eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence            5699999 9999999999999999999999999999876531  2445555543211   1      1245689999999


Q ss_pred             CCCCCCcHHHHH
Q psy13765        118 RLQPLLTIENVM  129 (606)
Q Consensus       118 ~l~~~ltv~~~l  129 (606)
                      ..+..+++.+.+
T Consensus       222 s~~~rl~a~e~a  233 (434)
T PRK07196        222 SPLMRIKATELC  233 (434)
T ss_pred             ChhhhHHHHHHH
Confidence            888888775544

>PLN03210 Resistant to P

Probab=98.26  E-value=2e-06  Score=105.64  Aligned_cols=47  Identities=19%  Similarity=0.252  Sum_probs=38.5

Q ss_pred             eeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCc
Q psy13765         53 KNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH   99 (606)
Q Consensus        53 ~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~   99 (606)
                      .=+++..+++++++|+|++|+|||||++++++.......|.+++++.
T Consensus       198 ~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~  244 (1153)
T PLN03210        198 SLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA  244 (1153)
T ss_pred             HHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence            33466778999999999999999999999977654445899998763

syringae 6; Provisional

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=98.25  E-value=3.3e-06  Score=90.88  Aligned_cols=42  Identities=29%  Similarity=0.456  Sum_probs=32.1

Q ss_pred             EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEE-EECCc
Q psy13765         57 GRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQI-LTNGH   99 (606)
Q Consensus        57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I-~~~G~   99 (606)
                      +-+.+|+++.|.|++|+|||||+..++..... ..+++ ++.+.
T Consensus        77 GGi~~GslvLI~G~pG~GKStLllq~a~~~a~-~g~~VlYvs~E  119 (372)
T cd01121          77 GGLVPGSVILIGGDPGIGKSTLLLQVAARLAK-RGGKVLYVSGE  119 (372)
T ss_pred             CCccCCeEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEECC
Confidence            46899999999999999999999988875432 13455 44554

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A

Probab=98.23  E-value=3e-06  Score=72.69  Aligned_cols=57  Identities=32%  Similarity=0.511  Sum_probs=40.6

Q ss_pred             CCccccCChHHHHH-HHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhc------CCcEEEEeCCCCCCCHHHHH
Q psy13765        139 NTRSSQLSGGQKKR-LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELIN------NPRVMFLDEPTTGLDSQSCS  211 (606)
Q Consensus       139 ~~~~~~lSgGqrqR-v~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~------~P~lllLDEPTsgLD~~~~~  211 (606)
                      .+..+++||||||. +.++.++.                        ++..+..      .|++++||||+++||+....
T Consensus        27 ~~~~~~~SGGEk~~~~~l~l~aa------------------------l~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~   82 (90)
T PF13558_consen   27 SRSFGTLSGGEKQFPFYLALAAA------------------------LAALYSSSSGRGDSPRLLFLDEAFSKLDEENIE   82 (90)
T ss_dssp             EEEGGGS-HHHHHHHHHHHHHHH------------------------HHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHH
T ss_pred             eccCCCCChhHhHHHHHHHHHHH------------------------HHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHH
Confidence            34567899999954 44444332                        2222222      28999999999999999999


Q ss_pred             HHHHHHHH
Q psy13765        212 QCIKLLKM  219 (606)
Q Consensus       212 ~i~~~l~~  219 (606)
                      .+++++++
T Consensus        83 ~~~~~l~~   90 (90)
T PF13558_consen   83 RLMDLLRQ   90 (90)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhC
Confidence            99999874

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=98.22  E-value=1.7e-05  Score=81.61  Aligned_cols=37  Identities=24%  Similarity=0.332  Sum_probs=32.6

Q ss_pred             cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -+.|+++.+-+++|+++.|.||+|+|||||+..++..
T Consensus        17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~   53 (271)
T cd01122          17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALD   53 (271)
T ss_pred             cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            4568888888999999999999999999999887654

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.20  E-value=2.1e-06  Score=106.35  Aligned_cols=43  Identities=23%  Similarity=0.449  Sum_probs=39.0

Q ss_pred             hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy13765        189 LINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQP  234 (606)
Q Consensus       189 L~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~  234 (606)
                      +..+|++++|||||+|||+.....++++++++   |.++|+++|..
T Consensus      1274 ~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680      1274 YPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred             cCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence            55679999999999999999999999999887   78999999873

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]

Probab=98.17  E-value=1.4e-05  Score=84.79  Aligned_cols=82  Identities=20%  Similarity=0.337  Sum_probs=55.2

Q ss_pred             ccCCCC-CCCCchhhhHHHHHHhh---------hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q psy13765        167 FLDEPT-TSNPNDQKKRLSIALEL---------INNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSA  236 (606)
Q Consensus       167 ~~de~~-~~~s~g~~krl~IA~aL---------~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~  236 (606)
                      +-+.|. .-.|.||+|-+.+|.-|         ..+++||+|||-+|-||..-+..+++. .   +.+.-+++|+-+.+ 
T Consensus       267 ~~~~~~~~~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~---~~~~Q~fvT~t~~~-  341 (363)
T COG1195         267 LNGKPAADFASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-I---ELGVQVFVTTTDLE-  341 (363)
T ss_pred             ECCcchhhhcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-c---ccCCeEEEEccCHH-
Confidence            334553 23688888888777554         468899999999999999999988877 2   23444555555533 


Q ss_pred             HHHhhcc---eeeeecCCcE
Q psy13765        237 TLFQMFD---QVYLLSGGQC  253 (606)
Q Consensus       237 ~i~~~~D---~v~~L~~G~~  253 (606)
                      .+.+..+   ++....+|++
T Consensus       342 ~~~~~~~~~~~~f~V~~g~i  361 (363)
T COG1195         342 DIDDNLDENAQMFHVEDGKI  361 (363)
T ss_pred             HhhhhhhccceEEEEeccee
Confidence            2333444   6666667765

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.16  E-value=9.9e-06  Score=73.29  Aligned_cols=44  Identities=18%  Similarity=0.401  Sum_probs=33.1

Q ss_pred             cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEecCCc
Q psy13765        191 NNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-----QGRTIICTIHQPS  235 (606)
Q Consensus       191 ~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-----~g~tii~~~H~~~  235 (606)
                      .++.++++||.-.. +......+.+.+.....     .+.++|+++++..
T Consensus        83 ~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          83 AKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             CCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence            34999999997664 56667778888877753     4778999988654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF

Probab=98.16  E-value=0.00034  Score=71.06  Aligned_cols=217  Identities=11%  Similarity=0.069  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhcCC---C-CChHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy13765        336 GVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNS---G-EYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEM  411 (606)
Q Consensus       336 ~~l~~R~~~~~~Rd~~~~~~r~~~~i~~all~G~~f~~~---~-~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er  411 (606)
                      +.+.||.++.+.|.|..+..-.+..++.|+.. ..+.+.   . .+..+...-.+...+  ......++. +.       
T Consensus         2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~--~~~~~~p~l-~~-------   70 (240)
T TIGR03518         2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTPFFSLAPW--VFLFLIPAI-TM-------   70 (240)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHHHHHHHHH--HHHHHHHHH-HH-------
Confidence            46789999999999999888777777777442 222110   1 111111111111111  111111111 11       


Q ss_pred             hhheecccCCC--------cchHHHHHHHHHHHhhHHHHHHh---hhhhhhhcccCCC---CchHHHHHHHHHHHHHHHH
Q psy13765        412 SILIKEHFNRW--------YSLKAYYVSVNLLDIPVAGFCCL---LFTTIVYPLTGQP---MELTRFTMFNCTSLLVVFI  477 (606)
Q Consensus       412 ~v~~rE~~~~~--------Y~~~~y~la~~~~elP~~~~~~~---~f~~i~Y~l~gl~---~~~~~f~~f~~~~~l~~~~  477 (606)
                      ..+.|||++|.        -+...+.++|.++-.-...+..+   ++....++. |.+   .+...++...+..++...+
T Consensus        71 ~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~  149 (240)
T TIGR03518        71 RSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQL-GNPVGNLDIGSTFGSYIGLLLLGSV  149 (240)
T ss_pred             HHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCccccccHHHHHHHHHHHHHHHHH
Confidence            34456666666        45678899999988755443332   222222222 222   2445555555556677778


Q ss_pred             HHHHHhHHhccccchh-HHHHHHHHHHHHHHhcccccCCCCc--ccccccccccCHHHHHHHHHHHHHhcCCCcccccCC
Q psy13765        478 AQSVGYMVGAVFNVVN-GTFVGPVLVVPMMMFSGFGVSINDI--PKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDE  554 (606)
Q Consensus       478 ~~~~g~~i~~~~~~~~-a~~~~~~~~~~~~lf~G~~i~~~~i--p~~~~W~~~iS~~~y~~eal~~n~~~~~~~~~~c~~  554 (606)
                      ..++|.++|++.+++. |..++ .... +.++.|+.. ..++  |++.+|+.|+||..|-.+..     .  + .+    
T Consensus       150 ~~aig~~iSsl~~~q~~a~~~~-~~~~-~~l~~~~~~-l~~~~~~~~~~~l~~~sp~~~~~~~~-----~--g-~i----  214 (240)
T TIGR03518       150 YTAIGLFASSLTENQIVAFIIA-VFLC-FLFYFGFDG-LASLLWGGSAYTISELGLSYHYESIS-----R--G-VI----  214 (240)
T ss_pred             HHHHHHHHHHHhchHHHHHHHH-HHHH-HHHHHHHHH-HhhhcchhHHHHHHHcCHHHHHHHHH-----c--C-cc----
Confidence            8899999999987665 43333 2222 222222211 2333  78889999999987754422     1  1 00    


Q ss_pred             CccccCChhHHHhhcCCCCCChhhhHHHHHHHHHHHHHHHHHHHHh
Q psy13765        555 LYCHYKEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSW  600 (606)
Q Consensus       555 ~~c~~~~g~~~L~~~~~~~~~~w~~~~il~~~~~~~~~~~~~~L~~  600 (606)
                                           .|.|+...+.+.+++..++...++.
T Consensus       215 ---------------------~~~~~v~~~~~~~~~l~l~~~~~~~  239 (240)
T TIGR03518       215 ---------------------DSRDVIYFLSITVLFLALTKLQLKS  239 (240)
T ss_pred             ---------------------cHhHHHHHHHHHHHHHHHHHHHHhc
Confidence                                 0466777778778777777766654

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.14  E-value=2.8e-06  Score=67.45  Aligned_cols=36  Identities=31%  Similarity=0.482  Sum_probs=29.0

Q ss_pred             ceeeeEEEeC-CeEEEEECCCCCCHHHHHHHHhCCCC
Q psy13765         52 LKNLCGRFPS-NQLIAIMGPSGAGKSSLLDVLSGYRS   87 (606)
Q Consensus        52 L~~vs~~i~~-Ge~~aIiGpsGaGKSTLL~~L~g~~~   87 (606)
                      .++.++++.+ |+++.|.||||||||||++++.=.+.
T Consensus        12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~   48 (62)
T PF13555_consen   12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY   48 (62)
T ss_pred             cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence            4456677775 57999999999999999999875543

>COG4637 Predicted ATPase [General function prediction only]

Probab=98.13  E-value=9.5e-06  Score=83.38  Aligned_cols=60  Identities=23%  Similarity=0.449  Sum_probs=51.1

Q ss_pred             CCchhhhHHHHHHhhhc--CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765        175 NPNDQKKRLSIALELIN--NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS  235 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~--~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~  235 (606)
                      ||-|+-|-+.+|.+|..  .|.+++||||-++|-|..-..+...+++.++++ -|+++||.+.
T Consensus       271 LSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~s-Qv~VsTHS~r  332 (373)
T COG4637         271 LSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRS-QVIVSTHSPR  332 (373)
T ss_pred             ccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccc-eEEEEeCCHH
Confidence            66677777777777764  589999999999999999999999999988765 8999999865

>PF00488 MutS_V: MutS domain V C-terminus

Probab=98.11  E-value=5.2e-05  Score=76.73  Aligned_cols=49  Identities=16%  Similarity=0.325  Sum_probs=36.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHH-HHHHHHHh-CCCEEEEEecCCchHHHhhcc
Q psy13765        193 PRVMFLDEPTTGLDSQSCSQCI-KLLKMISQ-QGRTIICTIHQPSATLFQMFD  243 (606)
Q Consensus       193 P~lllLDEPTsgLD~~~~~~i~-~~l~~l~~-~g~tii~~~H~~~~~i~~~~D  243 (606)
                      ..++++||+-.|=++.....+. ..++.+.+ .+..++++||..+  +.+..+
T Consensus       123 ~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~--l~~~~~  173 (235)
T PF00488_consen  123 KSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHE--LAELLE  173 (235)
T ss_dssp             TEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GG--GGGHHH
T ss_pred             ceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccch--hHHHhh
Confidence            7899999999999998887765 45667777 4889999999964  334443

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.10  E-value=1.1e-05  Score=79.46  Aligned_cols=28  Identities=43%  Similarity=0.618  Sum_probs=26.0

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGYRS   87 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~~   87 (606)
                      ++|++++|+||||||||||++.|++..+
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            5899999999999999999999999753

>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.09  E-value=7.4e-05  Score=80.57  Aligned_cols=149  Identities=21%  Similarity=0.349  Sum_probs=87.3

Q ss_pred             EEeCCeEEEEECCCCCCHHHHHHHHh-CCCCCCCccEEEECCccC-----Chhhhccc-EEEEccCCCCCCCCcHHHHHH
Q psy13765         58 RFPSNQLIAIMGPSGAGKSSLLDVLS-GYRSNGVTGQILTNGHSR-----NINAFRRV-SCYIQQDDRLQPLLTIENVMS  130 (606)
Q Consensus        58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~-g~~~~~~~G~I~~~G~~~-----~~~~~~~~-~~yv~Q~~~l~~~ltv~~~l~  130 (606)
                      -|++| ++.|+|.+=-||||||++|. |.+.. ..|    ||++.     +.-+.|.. .-.|..-|.       .-.+.
T Consensus       241 GIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnH-ipG----DGRE~VVT~~~avkirAEDGR~V~~vDI-------SpFI~  307 (448)
T PF09818_consen  241 GIPKG-VTLIVGGGYHGKSTLLEALERGVYNH-IPG----DGREFVVTDPDAVKIRAEDGRSVEGVDI-------SPFIN  307 (448)
T ss_pred             eeCCc-EEEEECCCCccHHHHHHHHHhcccCC-CCC----CCceEEEECCCceEEEecCCceEeCccc-------hHHHh
Confidence            58899 99999999999999999994 55432 222    23221     00011100 001111110       01111


Q ss_pred             HcCCccccCC---ccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCC--
Q psy13765        131 LLGLDESQNT---RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL--  205 (606)
Q Consensus       131 ~~gl~~~~~~---~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgL--  205 (606)
                        +|..-.|+   .-.+=||-.-|-..|..||-..                              .++|++||=||+=  
T Consensus       308 --~LP~g~dT~~FsT~~ASGSTSqAAnI~EAlE~G------------------------------a~~LLiDEDtsATNf  355 (448)
T PF09818_consen  308 --NLPGGKDTTCFSTENASGSTSQAANIMEALEAG------------------------------ARLLLIDEDTSATNF  355 (448)
T ss_pred             --hCCCCCCCCcccccCCCchHHHHHHHHHHHHcC------------------------------CCEEEEcCcccchhe
Confidence              11111121   2234577777777766666666                              7778888877753  


Q ss_pred             ---CHHHHHHH----------HHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765        206 ---DSQSCSQC----------IKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQ  252 (606)
Q Consensus       206 ---D~~~~~~i----------~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~  252 (606)
                         |...+..+          ++.++.|.+ .|.+.|+++-- +...++.+|+|++|++=+
T Consensus       356 miRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Gg-sgdy~~vAD~Vi~Md~Y~  415 (448)
T PF09818_consen  356 MIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGG-SGDYFDVADRVIMMDEYR  415 (448)
T ss_pred             eehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEecc-chhhHhhCCEEEEecCcc
Confidence               44444443          566777754 59888877755 457889999999998754

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=98.09  E-value=1.3e-05  Score=86.07  Aligned_cols=124  Identities=19%  Similarity=0.332  Sum_probs=73.4

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCccEEEECCccCC--hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCc
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGYRSN--GVTGQILTNGHSRN--INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLD  135 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~--~~~G~I~~~G~~~~--~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~  135 (606)
                      ++|.+++|.||+||||||+|++|++...+  +..+.|.....+..  ....++..+.+.|...--...+..+        
T Consensus       132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~--------  203 (358)
T TIGR02524       132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAA--------  203 (358)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHH--------
Confidence            58899999999999999999999997532  12345555444332  1222333456666532100011111        


Q ss_pred             cccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHH
Q psy13765        136 ESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIK  215 (606)
Q Consensus       136 ~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~  215 (606)
                                  +      +                              -.+|=.+|+++++.|-   =|..++...++
T Consensus       204 ------------~------l------------------------------~~aLR~~Pd~i~vGEi---Rd~et~~~al~  232 (358)
T TIGR02524       204 ------------G------V------------------------------RNALRRKPHAILVGEA---RDAETISAALE  232 (358)
T ss_pred             ------------H------H------------------------------HHHhccCCCEEeeeee---CCHHHHHHHHH
Confidence                        1      1                              1122234999999983   25555443333


Q ss_pred             HHHHHHhCCCEEEEEecCCchHHHhhcceeeee
Q psy13765        216 LLKMISQQGRTIICTIHQPSATLFQMFDQVYLL  248 (606)
Q Consensus       216 ~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L  248 (606)
                          .+..|.-++.|.|-.+  .....+|++-+
T Consensus       233 ----aa~tGh~v~tTlHa~~--~~~~i~Rl~~~  259 (358)
T TIGR02524       233 ----AALTGHPVYTTLHSSG--VAETIRRLVGS  259 (358)
T ss_pred             ----HHHcCCcEEEeeccCC--HHHHHHHHHHh
Confidence                3456889999999865  34667776654

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	606
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		2e-13
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		2e-13
4hlu_D	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		3e-13
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		2e-12
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		2e-12
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		2e-12
1l2t_A	235	Dimeric Structure Of Mj0796, A Bacterial Abc Transp		3e-12
3tif_A	235	Dimeric Structure Of A Post-Hydrolysis State Of The		4e-12
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		4e-12
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		7e-12
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		2e-11
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		2e-11
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		3e-11
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		4e-11
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		4e-11
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		5e-11
1f3o_A	235	Crystal Structure Of Mj0796 Atp-Binding Cassette Le		8e-11
3d31_A	348	Modbc From Methanosarcina Acetivorans Length = 348		9e-11
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		1e-10
3gfo_A	275	Structure Of Cbio1 From Clostridium Perfringens: Pa		4e-10
4g1u_C	266	X-Ray Structure Of The Bacterial Heme Transporter H		5e-10
2qi9_C	249	Abc-Transporter Btucd In Complex With Its Periplasm		8e-10
4dbl_C	249	Crystal Structure Of E159q Mutant Of Btucdf Length		1e-09
4fi3_C	249	Structure Of Vitamin B12 Transporter Btucd-F In A N		2e-09
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		2e-09
3tuj_C	366	Inward Facing Conformations Of The Metni Methionine		3e-09
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		3e-09
3tui_C	366	Inward Facing Conformations Of The Metni Methionine		4e-09
1l7v_C	249	Bacterial Abc Transporter Involved In B12 Uptake Le		5e-09
1q12_A	381	Crystal Structure Of The Atp-bound E. Coli Malk Len		6e-09
1q1b_A	381	Crystal Structure Of E. Coli Malk In The Nucleotide		6e-09
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		7e-09
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		8e-09
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		8e-09
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		9e-09
1ji0_A	240	Crystal Structure Analysis Of The Abc Transporter F		1e-08
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		1e-08
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		1e-08
2r6g_A	381	The Crystal Structure Of The E. Coli Maltose Transp		2e-08
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		3e-08
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		4e-08
3qf4_B	598	Crystal Structure Of A Heterodimeric Abc Transporte		6e-08
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		1e-07
2pcj_A	224	Crystal Structure Of Abc Transporter (Aq_297) From		2e-07
2onk_A	240	Abc Transporter Modbc In Complex With Its Binding P		3e-07
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		4e-07
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		6e-07
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		2e-06
2nq2_C	253	An Inward-Facing Conformation Of A Putative Metal-C		4e-06
1b0u_A	262	Atp-Binding Subunit Of The Histidine Permease From		8e-06
1g29_1	372	Malk Length = 372		1e-05
2d62_A	375	Crystal Structure Of Multiple Sugar Binding Transpo		2e-05
3qf4_A	587	Crystal Structure Of A Heterodimeric Abc Transporte		6e-05
3qf4_A	587	Crystal Structure Of A Heterodimeric Abc Transporte		2e-04
1vci_A	373	Crystal Structure Of The Atp-binding Cassette Of Mu		7e-05
1v43_A	372	Crystal Structure Of Atpase Subunit Of Abc Sugar Tr		7e-05
1g9x_A	257	Characterization Of The Twinning Structure Of Mj126		7e-05
2ihy_A	279	Structure Of The Staphylococcus Aureus Putative Atp		8e-05
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		9e-05
3fvq_A	359	Crystal Structure Of The Nucleotide Binding Domain		1e-04
1g6h_A	257	Crystal Structure Of The Adp Conformation Of Mj1267		2e-04
1gaj_A	257	Crystal Structure Of A Nucleotide-Free Atp-Binding		2e-04
1jj7_A	260	Crystal Structure Of The C-Terminal Atpase Domain O		3e-04
4fwi_B	334	Crystal Structure Of The Nucleotide-binding Domain		3e-04
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		4e-04
2ixf_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		6e-04

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 110/224 (49%), Gaps = 22/224 (9%)
Query: 50  DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG-----HSRNIN 104
           +VLK +       +++ ++GPSG+GKS+ L  L+    +   G+I+ +G        N+N
Sbjct: 38  EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLN-LLEDFDEGEIIIDGINLKAKDTNLN 96
Query: 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPR 164
             R     + Q   L P +T+ N ++L  +   +  R        +K  + A+EL++   
Sbjct: 97  KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPR--------EKAEAKAMELLDK-- 146
Query: 165 VMFLDEPTTSNPND----QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMI 220
            + L +   + P+     Q +R++IA  L   P++M  DEPT+ LD +   + + ++K +
Sbjct: 147 -VGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQL 205
Query: 221 SQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
           + +G T++   H+      ++ D+V  + GG  + +G  + L +
Sbjct: 206 ANEGMTMVVVTHE-MGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 110/224 (49%), Gaps = 22/224 (9%)
Query: 50  DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG-----HSRNIN 104
           +VLK +       +++ ++GPSG+GKS+ L  L+    +   G+I+ +G        N+N
Sbjct: 17  EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLN-LLEDFDEGEIIIDGINLKAKDTNLN 75
Query: 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPR 164
             R     + Q   L P +T+ N ++L  +   +  R        +K  + A+EL++   
Sbjct: 76  KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPR--------EKAEAKAMELLDK-- 125
Query: 165 VMFLDEPTTSNPND----QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMI 220
            + L +   + P+     Q +R++IA  L   P++M  DEPT+ LD +   + + ++K +
Sbjct: 126 -VGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQL 184
Query: 221 SQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
           + +G T++   H+      ++ D+V  + GG  + +G  + L +
Sbjct: 185 ANEGMTMVVVTHE-MGFAREVGDRVLFMDGGYIIEEGKPEDLFD 227

>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 110/228 (48%), Gaps = 22/228 (9%)
Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVS 110
           VLK++   F + ++  ++G +G+GK++LL +L+G  +    G+I  +G   +    R+  
Sbjct: 26  VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLA--AAGEIFLDGSPADPFLLRKNV 83
Query: 111 CYIQQDDRLQPL-LTIEN----VMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV 165
            Y+ Q+   Q +  T+E      + ++GLDES+           +KR+   LEL+    +
Sbjct: 84  GYVFQNPSSQIIGATVEEDVAFSLEIMGLDESE----------MRKRIKKVLELVGLSGL 133
Query: 166 MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGR 225
              D    S    QK+RL+IA  L  + R + LDEP + LD  S  +  ++L+ +  +G+
Sbjct: 134 AAADPLNLSGG--QKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGK 191
Query: 226 TIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNY-LSSVNLP 272
            II   H+         D +  +S G   + G+ ++ V      V +P
Sbjct: 192 GIILVTHE--LEYLDDMDFILHISNGTIDFCGSWEEFVEREFDDVEIP 237

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 122/244 (50%), Gaps = 25/244 (10%)
Query: 28  EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
           +I F+++ +       +K +   +L N+       ++I I+G SG+GKS+L  ++  +  
Sbjct: 3   DITFRNIRFR------YKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 56
Query: 88  NGVTGQILTNGHS---RNINAFRRVSCYIQQDDRLQPLLTIENV-MSLLGLDESQNTRSS 143
               GQ+L +GH     + N  RR    + QD+ L     I+N+ ++  G+   +   ++
Sbjct: 57  PE-NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA 115
Query: 144 QLSGGQKKRLSIALELINNPRVMF---LDEPTTSNPNDQKKRLSIALELINNPRVMFLDE 200
           +L+G        A + I+  R  +   + E        Q++R++IA  L+NNP+++  DE
Sbjct: 116 KLAG--------AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDE 167
Query: 201 PTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260
            T+ LD +S    ++ +  I  +GRT+I   H+ S    +  D++ ++  G+ + QG   
Sbjct: 168 ATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTV--KNADRIIVMEKGKIVEQGKHK 224
Query: 261 QLVN 264
           +L++
Sbjct: 225 ELLS 228

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 122/244 (50%), Gaps = 25/244 (10%)
Query: 28  EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
           +I F+++ +       +K +   +L N+       ++I I+G SG+GKS+L  ++  +  
Sbjct: 1   DITFRNIRFR------YKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 54
Query: 88  NGVTGQILTNGHS---RNINAFRRVSCYIQQDDRLQPLLTIENV-MSLLGLDESQNTRSS 143
               GQ+L +GH     + N  RR    + QD+ L     I+N+ ++  G+   +   ++
Sbjct: 55  PE-NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA 113
Query: 144 QLSGGQKKRLSIALELINNPRVMF---LDEPTTSNPNDQKKRLSIALELINNPRVMFLDE 200
           +L+G        A + I+  R  +   + E        Q++R++IA  L+NNP+++  DE
Sbjct: 114 KLAG--------AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDE 165
Query: 201 PTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260
            T+ LD +S    ++ +  I  +GRT+I   H+ S    +  D++ ++  G+ + QG   
Sbjct: 166 ATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTV--KNADRIIVMEKGKIVEQGKHK 222
Query: 261 QLVN 264
           +L++
Sbjct: 223 ELLS 226

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 122/244 (50%), Gaps = 25/244 (10%)
Query: 28  EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
           +I F+++ +       +K +   +L N+       ++I I+G SG+GKS+L  ++  +  
Sbjct: 7   DITFRNIRFR------YKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60
Query: 88  NGVTGQILTNGHS---RNINAFRRVSCYIQQDDRLQPLLTIENV-MSLLGLDESQNTRSS 143
               GQ+L +GH     + N  RR    + QD+ L     I+N+ ++  G+   +   ++
Sbjct: 61  PE-NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA 119
Query: 144 QLSGGQKKRLSIALELINNPRVMF---LDEPTTSNPNDQKKRLSIALELINNPRVMFLDE 200
           +L+G        A + I+  R  +   + E        Q++R++IA  L+NNP+++  DE
Sbjct: 120 KLAG--------AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDE 171
Query: 201 PTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260
            T+ LD +S    ++ +  I  +GRT+I   H+ S    +  D++ ++  G+ + QG   
Sbjct: 172 ATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTV--KNADRIIVMEKGKIVEQGKHK 228
Query: 261 QLVN 264
           +L++
Sbjct: 229 ELLS 232

>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 108/220 (49%), Gaps = 19/220 (8%)
Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           IK K++T T   G    +E    LKN+       + ++IMGPSG+GKS++L+++ G    
Sbjct: 2   IKLKNVTKTYKMG----EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDK 56
Query: 89  GVTGQILTNGHSRN------INAFRRVSC-YIQQDDRLQPLLT-IENVMSLLGLDESQNT 140
              G++  +    N      +   RR    ++ Q   L PLLT +ENV   L        
Sbjct: 57  PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIF-----K 111
Query: 141 RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDE 200
               +SG ++++ ++    +      F +         Q++R++IA  L NNP ++  D+
Sbjct: 112 YRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQ 171
Query: 201 PTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLF 239
           PT  LDS++  + ++LLK ++++ G+T++   H  +   F
Sbjct: 172 PTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARF 211

>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 108/220 (49%), Gaps = 19/220 (8%)
Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           +K K++T T   G    +E    LKN+       + ++IMGPSG+GKS++L+++ G    
Sbjct: 2   VKLKNVTKTYKMG----EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDK 56
Query: 89  GVTGQILTNGHSRN------INAFRRVSC-YIQQDDRLQPLLT-IENVMSLLGLDESQNT 140
              G++  +    N      +   RR    ++ Q   L PLLT +ENV   L        
Sbjct: 57  PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIF-----K 111
Query: 141 RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDE 200
               +SG ++++ ++    +      F +         Q++R++IA  L NNP ++  D+
Sbjct: 112 YRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQ 171
Query: 201 PTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLF 239
           PT  LDS++  + ++LLK ++++ G+T++   H  +   F
Sbjct: 172 PTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARF 211

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 122/244 (50%), Gaps = 25/244 (10%)
Query: 28  EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
           +I F+++ +       +K +   +L N+       ++I I+G +G+GKS+L  ++  +  
Sbjct: 3   DITFRNIRFR------YKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYI 56
Query: 88  NGVTGQILTNGHS---RNINAFRRVSCYIQQDDRLQPLLTIENV-MSLLGLDESQNTRSS 143
               GQ+L +GH     + N  RR    + QD+ L     I+N+ ++  G+   +   ++
Sbjct: 57  PE-NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA 115
Query: 144 QLSGGQKKRLSIALELINNPRVMF---LDEPTTSNPNDQKKRLSIALELINNPRVMFLDE 200
           +L+G        A + I+  R  +   + E        Q++R++IA  L+NNP+++  DE
Sbjct: 116 KLAG--------AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDE 167
Query: 201 PTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260
            T+ LD +S    ++ +  I  +GRT+I   H+ S    +  D++ ++  G+ + QG   
Sbjct: 168 ATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTV--KNADRIIVMEKGKIVEQGKHK 224
Query: 261 QLVN 264
           +L++
Sbjct: 225 ELLS 228

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 122/244 (50%), Gaps = 25/244 (10%)
Query: 28  EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
           +I F+++ +       +K +   +L N+       ++I I+G SG+GKS+L  ++  +  
Sbjct: 7   DITFRNIRFR------YKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60
Query: 88  NGVTGQILTNGHS---RNINAFRRVSCYIQQDDRLQPLLTIENV-MSLLGLDESQNTRSS 143
               GQ+L +GH     + N  RR    + QD+ L     I+N+ ++  G+   +   ++
Sbjct: 61  PE-NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA 119
Query: 144 QLSGGQKKRLSIALELINNPRVMF---LDEPTTSNPNDQKKRLSIALELINNPRVMFLDE 200
           +L+G        A + I+  R  +   + E        Q++R++IA  L+NNP+++  D+
Sbjct: 120 KLAG--------AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQ 171
Query: 201 PTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260
            T+ LD +S    ++ +  I  +GRT+I   H+ S    +  D++ ++  G+ + QG   
Sbjct: 172 ATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTV--KNADRIIVMEKGKIVEQGKHK 228
Query: 261 QLVN 264
           +L++
Sbjct: 229 ELLS 232

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 122/242 (50%), Gaps = 24/242 (9%)
Query: 24  ADRI--EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDV 81
           A+R+  E+  KD+T+T      ++ + K  L ++    P  + +A++G SG+GKS++ ++
Sbjct: 335 AERVNGEVDVKDVTFT------YQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANL 388
Query: 82  LSGYRSNGVTGQILTNGHS---RNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQ 138
            + +     +G I  +GH      +   RR    + Q+  L    TI N ++     E +
Sbjct: 389 FTRFYDVD-SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAA--EGE 444
Query: 139 NTRSSQLSGGQKKRLSIALELINN-PRVM--FLDEPTTSNPNDQKKRLSIALELINNPRV 195
            TR  Q+   Q  R + A+E I N P+ +   + E  TS    Q++R++IA  L+ +  V
Sbjct: 445 YTRE-QIE--QAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPV 501
Query: 196 MFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY 255
           + LDE T+ LD++S       L  + Q+ +T++   H+ S    +  D++ ++  G+ + 
Sbjct: 502 LILDEATSALDTESERAIQAALDEL-QKNKTVLVIAHRLST--IEQADEILVVDEGEIIE 558
Query: 256 QG 257
           +G
Sbjct: 559 RG 560

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 34/179 (18%)
Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF---- 106
           +LK++       + +A +G SG GKS+L++++  +  +  +GQIL +GH  NI  F    
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF-YDVTSGQILIDGH--NIKDFLTGS 412
Query: 107 -RRVSCYIQQDDRL------------QPLLTIENVMSLL--------------GLDESQN 139
            R     +QQD+ L            +P  T E V+                 G D    
Sbjct: 413 LRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVG 472
Query: 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFL 198
            R  +LSGGQK+RLSIA   +NNP ++ LDE T++   + +  +  AL++++  R   +
Sbjct: 473 ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLI 531

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 102/223 (45%), Gaps = 16/223 (7%)
Query: 47  EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH---SRNI 103
           + + +L+++      N +IA  GPSG GKS++  +L  +      G+I  +G    + ++
Sbjct: 13  DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP-TAGEITIDGQPIDNISL 71
Query: 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINN- 162
             +R    ++ QD  +      EN+   L  D +       L       L+ A   + N 
Sbjct: 72  ENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLD------LAFARSFVENM 125
Query: 163 PRVMFLD--EPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMI 220
           P  +  +  E        Q++RL+IA   + NP+++ LDE T  LDS+S S   K L  +
Sbjct: 126 PDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL 185
Query: 221 SQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263
             +GRT +   H+ S  +    D++Y +  GQ    G  ++LV
Sbjct: 186 -MKGRTTLVIAHRLSTIVDA--DKIYFIEKGQITGSGKHNELV 225

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 121/244 (49%), Gaps = 25/244 (10%)
Query: 28  EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
           +I F+++ +       +K +   +L N+       ++I I+G SG+GKS+L  ++  +  
Sbjct: 1   DITFRNIRFR------YKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 54
Query: 88  NGVTGQILTNGHS---RNINAFRRVSCYIQQDDRLQPLLTIENV-MSLLGLDESQNTRSS 143
               GQ+L +GH     + N  RR    + QD+ L     I+N+ ++  G+   +   ++
Sbjct: 55  PE-NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA 113
Query: 144 QLSGGQKKRLSIALELINNPRVMF---LDEPTTSNPNDQKKRLSIALELINNPRVMFLDE 200
           +L+G        A + I+  R  +   + E        Q++R++IA  L+NNP+++  DE
Sbjct: 114 KLAG--------AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDE 165
Query: 201 PTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260
            T+ LD +S    ++ +  I  +GRT+I    + S    +  D++ ++  G+ + QG   
Sbjct: 166 ATSALDYESEHVIMRNMHKIC-KGRTVIIIAARLSTV--KNADRIIVMEKGKIVEQGKHK 222
Query: 261 QLVN 264
           +L++
Sbjct: 223 ELLS 226

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 121/244 (49%), Gaps = 25/244 (10%)
Query: 28  EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
           +I F+++ +       +K +   +L N+       ++I I+G SG+GKS+L  ++  +  
Sbjct: 7   DITFRNIRFR------YKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60
Query: 88  NGVTGQILTNGHS---RNINAFRRVSCYIQQDDRLQPLLTIENV-MSLLGLDESQNTRSS 143
               GQ+L +GH     + N  RR    + QD+ L     I+N+ ++  G+   +   ++
Sbjct: 61  PE-NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA 119
Query: 144 QLSGGQKKRLSIALELINNPRVMF---LDEPTTSNPNDQKKRLSIALELINNPRVMFLDE 200
           +L+G        A + I+  R  +   + E        Q++R++IA  L+NNP+++  DE
Sbjct: 120 KLAG--------AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDE 171
Query: 201 PTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260
            T+ LD +S    ++ +  I  +GRT+I    + S    +  D++ ++  G+ + QG   
Sbjct: 172 ATSALDYESEHVIMRNMHKIC-KGRTVIIIAARLSTV--KNADRIIVMEKGKIVEQGKHK 228
Query: 261 QLVN 264
           +L++
Sbjct: 229 ELLS 232

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 108/227 (47%), Gaps = 10/227 (4%)
Query: 42   LGFKQEPK-DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG-- 98
              + + P+ ++LK L       Q +A++GPSG GKS+++ +L  +    + G+I  +G  
Sbjct: 1084 FAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT-LGGEIFIDGSE 1142
Query: 99   -HSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIAL 157
              + N    R     + Q+  L      EN+  + GLD S  T +      +   +   +
Sbjct: 1143 IKTLNPEHTRSQIAIVSQEPTLFDCSIAENI--IYGLDPSSVTMAQVEEAARLANIHNFI 1200
Query: 158  ELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL 217
              +       + +  T     QK+R++IA  L+ NP+++ LDE T+ LD++S     + L
Sbjct: 1201 AELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEAL 1260
Query: 218  KMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
               +++GRT I   H+ +  +    D + ++S G  + +G   QL++
Sbjct: 1261 DR-AREGRTCIVIAHRLNTVMNA--DCIAVVSNGTIIEKGTHTQLMS 1304

>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 106/222 (47%), Gaps = 23/222 (10%)
Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           IK K++T T   G    +E    LKN+       + ++I GPSG+GKS+ L+++ G    
Sbjct: 2   IKLKNVTKTYKXG----EEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNII-GCLDK 56
Query: 89  GVTGQILTNGHSRN------INAFRRVSC-YIQQDDRLQPLLT-IENVMSLLGLDESQNT 140
              G++  +    N      +   RR    ++ Q   L PLLT +ENV   L        
Sbjct: 57  PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIF----KY 112
Query: 141 RSSQLSGGQKKRLSIALELINNPRV--MFLDEPTTSNPNDQKKRLSIALELINNPRVMFL 198
           R +     ++KR   ALE +    +   F +         Q++R++IA  L NNP ++  
Sbjct: 113 RGAXSGEERRKR---ALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILA 169
Query: 199 DEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLF 239
           DEPT  LDS++  +  +LLK ++++ G+T++   H  +   F
Sbjct: 170 DEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARF 211

>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348

Iteration: 1
 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/216 (19%), Positives = 105/216 (48%), Gaps = 21/216 (9%)
Query: 52  LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINAFRRVS 110
           L NL  +  S +   I+GP+GAGK+  L++++G+     +G+IL +G    +++  +   
Sbjct: 16  LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD-SGRILLDGKDVTDLSPEKHDI 74
Query: 111 CYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDE 170
            ++ Q+  L P + ++  +                 G + K++     +++  R + ++ 
Sbjct: 75  AFVYQNYSLFPHMNVKKNLEF---------------GMRMKKIKDPKRVLDTARDLKIEH 119
Query: 171 PTTSNP----NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRT 226
               NP      +++R+++A  L+ NP+++ LDEP + LD ++     ++L ++ ++ + 
Sbjct: 120 LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL 179
Query: 227 IICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
            +  I         M D++ ++  G+ +  G  +++
Sbjct: 180 TVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 111/234 (47%), Gaps = 30/234 (12%)
Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG--YRSNGVTGQILTNGHSRNINAF 106
           K++LK +       ++  ++GP+GAGK++ L ++S     S+G+   +         +  
Sbjct: 28  KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV-TVFGKNVVEEPHEV 86
Query: 107 RRVSCYI-QQDDRLQPLLTIENVMSLLGLDESQNT-------RSSQLSG-GQKKRLSIAL 157
           R++  Y+ ++    + +  IE +  + G   S ++       R+++++G G+K       
Sbjct: 87  RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEK------- 139
Query: 158 ELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL 217
                     + +  ++      ++L IA  L+ NPR+  LDEPT+GLD  +  +  K+L
Sbjct: 140 ----------IKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKIL 189
Query: 218 KMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNL 271
           K  SQ+G TI+ + H      F + D++ L+  G  +  G  ++L     + N+
Sbjct: 190 KQASQEGLTILVSSHNMLEVEF-LCDRIALIHNGTIVETGTVEELKERYKAQNI 242

>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 117/258 (45%), Gaps = 29/258 (11%)
Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           +K ++L Y  S G          LK +       ++ AI+G +G GKS+L    +G    
Sbjct: 8   LKVEELNYNYSDGT-------HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP 60
Query: 89  GVTGQILTNGH-----SRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSS 143
             +G+IL +        + I   R     + QD   Q  L   +V      D S    + 
Sbjct: 61  S-SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQ--LFSASVYQ----DVSFGAVNM 113
Query: 144 QLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPT 202
           +L   + +KR+  AL+      +   D+PT      QKKR++IA  L+  P+V+ LDEPT
Sbjct: 114 KLPEDEIRKRVDNALKRTGIEHLK--DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPT 171
Query: 203 TGLDSQSCSQCIKLL-KMISQQGRTIICTIHQPSATLFQMF-DQVYLLSGGQCLYQGATD 260
            GLD    S+ +KLL +M  + G TII   H     +  ++ D V+++  G+ + QG   
Sbjct: 172 AGLDPMGVSEIMKLLVEMQKELGITIIIATH--DIDIVPLYCDNVFVMKEGRVILQGNPK 229
Query: 261 QLV---NYLSSVNLPCPK 275
           ++      +  VNL  P+
Sbjct: 230 EVFAEKEVIRKVNLRLPR 247

>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266

Iteration: 1
 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 114/236 (48%), Gaps = 22/236 (9%)
Query: 39  STGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY--RSNGVTGQILT 96
           ++ L +  + + ++ ++     S +++AI+GP+GAGKS+LL +L+GY   S+G    +  
Sbjct: 14  ASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQ 73
Query: 97  NGHSRNINAFRRVSCYIQQDDRLQPLLTIENV--MSLLGLDESQNTRSSQLSGGQKKRLS 154
           N +S    A  R    ++Q   L    ++  V  M       SQ+ ++ Q    Q   L+
Sbjct: 74  NLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLA 133
Query: 155 IALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNP----RVMFLDEPTTGLDSQSC 210
           +A            D    S    Q+ +L+  L  +  P    R +FLDEPT+ LD    
Sbjct: 134 LAQR----------DYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQ 183
Query: 211 SQCIKLLKMIS-QQGRTIICTIHQPS-ATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
              ++LL+ ++ Q+   + C +H  + A L+   D++ LL+ G+ +  G  ++++N
Sbjct: 184 QHTLRLLRQLTRQEPLAVCCVLHDLNLAALY--ADRIMLLAQGKLVACGTPEEVLN 237

>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 101/231 (43%), Gaps = 44/231 (19%)
Query: 52  LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT----GQILTNGHSRNINAFR 107
           L  L G   + +++ ++GP+GAGKS+LL   +G  S   +    GQ L    +  +   R
Sbjct: 16  LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 108 R-------------VSCYI--QQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKR 152
                         V  Y+   Q D+ +  L + +V   L LD+     ++QLSGG+ +R
Sbjct: 76  AYLSQQQTPPFATPVWHYLTLHQHDKTRTEL-LNDVAGALALDDKLGRSTNQLSGGEWQR 134
Query: 153 LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQ 212
           + +A         + L     +NP  Q               ++ LDEP   LD    S 
Sbjct: 135 VRLA--------AVVLQITPQANPAGQ---------------LLLLDEPXNSLDVAQQSA 171
Query: 213 CIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263
             K+L  +SQQG  I+ + H  + TL     + +LL GG+ L  G  ++++
Sbjct: 172 LDKILSALSQQGLAIVXSSHDLNHTLRHAH-RAWLLKGGKXLASGRREEVL 221

>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 102/231 (44%), Gaps = 44/231 (19%)
Query: 52  LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT----GQILTNGHSRNINAFR 107
           L  L G   + +++ ++GP+GAGKS+LL  ++G  S   +    GQ L    +  +   R
Sbjct: 16  LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 108 R-------------VSCYI--QQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKR 152
                         V  Y+   Q D+ +  L + +V   L LD+     ++QLSGG+ +R
Sbjct: 76  AYLSQQQTPPFATPVWHYLTLHQHDKTRTEL-LNDVAGALALDDKLGRSTNQLSGGEWQR 134
Query: 153 LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQ 212
           + +A         + L     +NP  Q               ++ LD+P   LD    S 
Sbjct: 135 VRLA--------AVVLQITPQANPAGQ---------------LLLLDQPMNSLDVAQQSA 171
Query: 213 CIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263
             K+L  +SQQG  I+ + H  + TL     + +LL GG+ L  G  ++++
Sbjct: 172 LDKILSALSQQGLAIVMSSHDLNHTLRHAH-RAWLLKGGKMLASGRREEVL 221

>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 102/231 (44%), Gaps = 44/231 (19%)
Query: 52  LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT----GQILTNGHSRNINAFR 107
           L  L G   + +++ ++GP+GAGKS+LL  ++G  S   +    GQ L    +  +   R
Sbjct: 16  LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 108 R-------------VSCYI--QQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKR 152
                         V  Y+   Q D+ +  L + +V   L LD+     ++QLSGG+ +R
Sbjct: 76  AYLSQQQTPPFATPVWHYLTLHQHDKTRTEL-LNDVAGALALDDKLGRSTNQLSGGEWQR 134
Query: 153 LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQ 212
           + +A         + L     +NP  Q               ++ LD+P   LD    S 
Sbjct: 135 VRLA--------AVVLQITPQANPAGQ---------------LLLLDQPMCSLDVAQQSA 171
Query: 213 CIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263
             K+L  +SQQG  I+ + H  + TL     + +LL GG+ L  G  ++++
Sbjct: 172 LDKILSALSQQGLAIVMSSHDLNHTLRHAH-RAWLLKGGKMLASGRREEVL 221

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 117/247 (47%), Gaps = 28/247 (11%)
Query: 28  EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
           +++F+++T+T      +       L+N+  + P+ + +A++G SG+GKS++  +++ +  
Sbjct: 341 DVEFRNVTFT------YPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD 394
Query: 88  NGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQN---TRSSQ 144
               G+IL +GH         +  Y     R Q  L  +NV  L     + N    R+ Q
Sbjct: 395 ID-EGEILMDGHD--------LREYTLASLRNQVALVSQNV-HLFNDTVANNIAYARTEQ 444
Query: 145 LSGGQ---KKRLSIALELIN---NPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFL 198
            S  Q     R++ A++ IN   N     + E        Q++R++IA  L+ +  ++ L
Sbjct: 445 YSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILIL 504
Query: 199 DEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258
           DE T+ LD++S       L  + Q+ RT +   H+ S    +  D++ ++  G  + +G 
Sbjct: 505 DEATSALDTESERAIQAALDEL-QKNRTSLVIAHRLST--IEKADEIVVVEDGVIVERGT 561
Query: 259 TDQLVNY 265
            + L+ +
Sbjct: 562 HNDLLEH 568

>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 115/269 (42%), Gaps = 63/269 (23%)
Query: 25  DRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLS- 83
           D+  IK  ++T     G    Q     L N+    P+ Q+  ++G SGAGKS+L+  ++ 
Sbjct: 21  DKHXIKLSNITKVFHQGTRTIQ----ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL 76
Query: 84  -GYRSNG---VTGQILTN-GHSRNINAFRRVSCYIQQDDRLQPLLTIENV---------- 128
               + G   V GQ LT    S    A R++    Q  + L       NV          
Sbjct: 77  LERPTEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTP 136
Query: 129 -----------MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPN 177
                      +SL+GL +  ++  S LSGGQK+R++IA  L +NP+V+  D+ T++   
Sbjct: 137 KDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSA--- 193
Query: 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSA 236
                                      LD  +    ++LLK I+++ G TI+   H+   
Sbjct: 194 ---------------------------LDPATTRSILELLKDINRRLGLTILLITHEXDV 226
Query: 237 TLFQMFDQVYLLSGGQCLYQGATDQLVNY 265
            + ++ D V ++S G+ + Q    ++ ++
Sbjct: 227 -VKRICDCVAVISNGELIEQDTVSEVFSH 254

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 113/265 (42%), Gaps = 63/265 (23%)
Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLS--GYR 86
           IK  ++T     G    Q     L N+    P+ Q+  ++G SGAGKS+L+  ++     
Sbjct: 2   IKLSNITKVFHQGTRTIQ----ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP 57
Query: 87  SNG---VTGQILTN-GHSRNINAFRRVSCYIQQDDRLQPLLTIENV-------------- 128
           + G   V GQ LT    S    A R++    Q  + L       NV              
Sbjct: 58  TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEV 117
Query: 129 -------MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKK 181
                  +SL+GL +  ++  S LSGGQK+R++IA  L +NP+V+  DE T++       
Sbjct: 118 KRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSA------- 170
Query: 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQ 240
                                  LD  +    ++LLK I+++ G TI+   H+    + +
Sbjct: 171 -----------------------LDPATTRSILELLKDINRRLGLTILLITHEMDV-VKR 206
Query: 241 MFDQVYLLSGGQCLYQGATDQLVNY 265
           + D V ++S G+ + Q    ++ ++
Sbjct: 207 ICDCVAVISNGELIEQDTVSEVFSH 231

>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 115/269 (42%), Gaps = 63/269 (23%)
Query: 25  DRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLS- 83
           D+  IK  ++T     G    Q     L N+    P+ Q+  ++G SGAGKS+L+  ++ 
Sbjct: 21  DKHMIKLSNITKVFHQGTRTIQ----ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL 76
Query: 84  -GYRSNG---VTGQILTN-GHSRNINAFRRVSCYIQQDDRLQPLLTIENV---------- 128
               + G   V GQ LT    S    A R++    Q  + L       NV          
Sbjct: 77  LERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTP 136
Query: 129 -----------MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPN 177
                      +SL+GL +  ++  S LSGGQK+R++IA  L +NP+V+  D+ T++   
Sbjct: 137 KDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSA--- 193
Query: 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSA 236
                                      LD  +    ++LLK I+++ G TI+   H+   
Sbjct: 194 ---------------------------LDPATTRSILELLKDINRRLGLTILLITHEMDV 226
Query: 237 TLFQMFDQVYLLSGGQCLYQGATDQLVNY 265
            + ++ D V ++S G+ + Q    ++ ++
Sbjct: 227 -VKRICDCVAVISNGELIEQDTVSEVFSH 254

>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 100/231 (43%), Gaps = 44/231 (19%)
Query: 52  LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT----GQILTNGHSRNINAFR 107
           L  L G   + +++ ++GP+GAGKS+LL   +G  S   +    GQ L    +  +   R
Sbjct: 16  LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 108 R-------------VSCYI--QQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKR 152
                         V  Y+   Q D+ +  L + +V   L LD+     ++QLSGG+ +R
Sbjct: 76  AYLSQQQTPPFATPVWHYLTLHQHDKTRTEL-LNDVAGALALDDKLGRSTNQLSGGEWQR 134
Query: 153 LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQ 212
           + +A         + L     +NP  Q               ++ LDEP   LD    S 
Sbjct: 135 VRLA--------AVVLQITPQANPAGQ---------------LLLLDEPXNSLDVAQQSA 171
Query: 213 CIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263
             K+L  + QQG  I+ + H  + TL     + +LL GG+ L  G  ++++
Sbjct: 172 LDKILSALCQQGLAIVXSSHDLNHTLRHAH-RAWLLKGGKXLASGRREEVL 221

>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 101/228 (44%), Gaps = 35/228 (15%)
Query: 61  SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR--NINAFRRVSCYIQQDDR 118
             + +  +GPSG GKS+LL +++G  +  +T   L  G  R  +     R    + Q   
Sbjct: 28  EGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGVGMVFQSYA 85
Query: 119 LQPLLTIENVMSLLGLDESQNTRSSQLSGGQK----KRLSIALELINNPRVMFLDEPTTS 174
           L P L++   MS  GL         +L+G +K    +R++   E++       LD    +
Sbjct: 86  LYPHLSVAENMSF-GL---------KLAGAKKEVINQRVNQVAEVLQ--LAHLLDRKPKA 133
Query: 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQC-IKLLKMISQQGRTIICTIHQ 233
               Q++R++I   L+  P V  LDEP + LD+    Q  I++ ++  + GRT+I   H 
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 234 PSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPAD 281
                  + D++ +L  G+             ++ V  P   YH PAD
Sbjct: 194 -QVEAMTLADKIVVLDAGR-------------VAQVGKPLELYHYPAD 227

>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 101/228 (44%), Gaps = 35/228 (15%)
Query: 61  SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR--NINAFRRVSCYIQQDDR 118
             + +  +GPSG GKS+LL +++G  +  +T   L  G  R  +     R    + Q   
Sbjct: 28  EGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGVGMVFQSYA 85
Query: 119 LQPLLTIENVMSLLGLDESQNTRSSQLSGGQK----KRLSIALELINNPRVMFLDEPTTS 174
           L P L++   MS  GL         +L+G +K    +R++   E++       LD    +
Sbjct: 86  LYPHLSVAENMSF-GL---------KLAGAKKEVINQRVNQVAEVLQ--LAHLLDRKPKA 133
Query: 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQC-IKLLKMISQQGRTIICTIHQ 233
               Q++R++I   L+  P V  LDEP + LD+    Q  I++ ++  + GRT+I   H 
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 234 PSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPAD 281
                  + D++ +L  G+             ++ V  P   YH PAD
Sbjct: 194 -QVEAMTLADKIVVLDAGR-------------VAQVGKPLELYHYPAD 227

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 112/245 (45%), Gaps = 30/245 (12%)
Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSS-------LLDV 81
           ++FK++ ++  +     ++   +LK L  +  S Q +A++G SG GKS+       L D 
Sbjct: 388 LEFKNIHFSYPS-----RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP 442
Query: 82  LSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVM---SLLGLDESQ 138
           L G  S  + GQ +    + N+   R +   + Q+  L      EN+      + +DE +
Sbjct: 443 LDGMVS--IDGQDI---RTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIE 497
Query: 139 NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFL 198
                     +       ++L +    + + E        QK+R++IA  L+ NP+++ L
Sbjct: 498 KAVK------EANAYDFIMKLPHQFDTL-VGERGAQLSGGQKQRIAIARALVRNPKILLL 550
Query: 199 DEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258
           DE T+ LD++S +     L   +++GRT I   H+ S    +  D +    GG  + QG 
Sbjct: 551 DEATSALDTESEAVVQAALDK-AREGRTTIVIAHRLSTV--RNADVIAGFDGGVIVEQGN 607
Query: 259 TDQLV 263
            D+L+
Sbjct: 608 HDELM 612

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 108/230 (46%), Gaps = 17/230 (7%)
Query: 60  PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINA--FRRVSCYIQQD 116
           PS  + A++GPSG+GKS++L +L     +  +G I  +GH  R +N    R     + Q+
Sbjct: 368 PSGSVTALVGPSGSGKSTVLSLLLRLY-DPASGTISLDGHDIRQLNPVWLRSKIGTVSQE 426
Query: 117 DRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMF---LDEPTT 173
             L      EN+    G D+  +  + ++   +   ++ A+  I N    F   + E   
Sbjct: 427 PILFSCSIAENIA--YGADDPSSVTAEEIQ--RVAEVANAVAFIRNFPQGFNTVVGEKGV 482
Query: 174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQ 233
                QK+R++IA  L+ NP+++ LDE T+ LD+++     + L  +   GRT++   H+
Sbjct: 483 LLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL-MDGRTVLVIAHR 541
Query: 234 PSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFV 283
            S    +  + V +L  G+    G  ++L   LS  N    K  N   F+
Sbjct: 542 LST--IKNANMVAVLDQGKITEYGKHEEL---LSKPNGIYRKLMNKQSFI 586

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 101/223 (45%), Gaps = 25/223 (11%)
Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSS-------LLDVLSGYRSNGVTGQILTNGHSRNI 103
           +LK L  +  S Q +A++G SG GKS+       L D L G  S  + GQ +    + N+
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS--IDGQDI---RTINV 459
Query: 104 NAFRRVSCYIQQDDRLQPLLTIENVM---SLLGLDESQNTRSSQLSGGQKKRLSIALELI 160
              R +   + Q+  L      EN+      + +DE +          +       ++L 
Sbjct: 460 RYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVK------EANAYDFIMKLP 513
Query: 161 NNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMI 220
           +    + + E        QK+R++IA  L+ NP+++ LDE T+ LD++S +     L   
Sbjct: 514 HQFDTL-VGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK- 571
Query: 221 SQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263
           +++GRT I   H+ S    +  D +    GG  + QG  D+L+
Sbjct: 572 AREGRTTIVIAHRLSTV--RNADVIAGFDGGVIVEQGNHDELM 612

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 101/235 (42%), Gaps = 56/235 (23%)
Query: 52  LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHS--------RN 102
           L N+  +    + +A++GPSG+GKS+LL  ++G Y+    +G+I  +           RN
Sbjct: 19  LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT--SGKIYFDEKDVTELPPKDRN 76
Query: 103 IN-AFRRVSCY--------------IQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSG 147
           +   F+  + Y              +++  R +    +  V  +L +D+  N    QLSG
Sbjct: 77  VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSG 136
Query: 148 GQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDS 207
           GQ++R++IA  L+  P V+ LDEP ++   D   RL +  E                   
Sbjct: 137 GQQQRVAIARALVKEPEVLLLDEPLSN--LDALLRLEVRAE------------------- 175
Query: 208 QSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
                   L ++  + G T +   H   A    M D++ ++  G+ L  G  D++
Sbjct: 176 --------LKRLQKELGITTVYVTHD-QAEALAMADRIAVIREGEILQVGTPDEV 221

>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 108/221 (48%), Gaps = 20/221 (9%)
Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNG----VTGQILTNGHSRNINA 105
            +K +  + P  Q++ ++G +GAGK++ L  ++G  R+        GQ +TN  +  IN 
Sbjct: 21  AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVIN- 79
Query: 106 FRRVSCYIQQDDRLQPLLTI-ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPR 164
            R     + +  R+ P LT+ EN+        + N +  +   G K+ L     L   PR
Sbjct: 80  -RXGIALVPEGRRIFPELTVYENLXX-----GAYNRKDKE---GIKRDLEWIFSLF--PR 128
Query: 165 VM-FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ 223
           +   L +   +    +++ L+I   L + P+++  DEP+ GL     S+  ++++ I+Q+
Sbjct: 129 LKERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQE 188
Query: 224 GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
           G TI+  + Q +    ++    Y+L  GQ + +G   +L++
Sbjct: 189 GTTILL-VEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 102/211 (48%), Gaps = 14/211 (6%)
Query: 60  PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINA--FRRVSCYIQQD 116
           PS  + A++GPSG+GKS++L +L     +  +G I  +GH  R +N    R     + Q+
Sbjct: 399 PSGSVTALVGPSGSGKSTVLSLLLRLY-DPASGTISLDGHDIRQLNPVWLRSKIGTVSQE 457
Query: 117 DRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMF---LDEPTT 173
             L      EN+    G D+  +  + ++   +   ++ A+  I N    F   + E   
Sbjct: 458 PILFSCSIAENIA--YGADDPSSVTAEEIQ--RVAEVANAVAFIRNFPQGFNTVVGEKGV 513
Query: 174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQ 233
                QK+R++IA  L+ NP+++ LDE T+ LD+++     + L  +   GRT++   H 
Sbjct: 514 LLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL-MDGRTVLVIAHH 572
Query: 234 PSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
            S    +  + V +L  G+    G  ++L++
Sbjct: 573 LST--IKNANMVAVLDQGKITEYGKHEELLS 601

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 115/242 (47%), Gaps = 22/242 (9%)
Query: 28  EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
           +++F+++T+T      +       L+N+  + P+ + +A++G SG+GKS++  +++ +  
Sbjct: 341 DLEFRNVTFT------YPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD 394
Query: 88  NGVTGQILTNGH---SRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQ 144
               G IL +GH      + + R     + Q+  L      + V + +    ++     Q
Sbjct: 395 ID-EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN----DTVANNIAYARTEEYSREQ 449
Query: 145 LSGGQKKRLSIALELIN---NPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP 201
           +   +  R++ A++ IN   N     + E        Q++R++IA  L+ +  ++ LDE 
Sbjct: 450 IE--EAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEA 507
Query: 202 TTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ 261
           T+ LD++S       L  + Q+ RT +   H+ S    +  D++ ++  G  + +G   +
Sbjct: 508 TSALDTESERAIQAALDEL-QKNRTSLVIAHRLST--IEQADEIVVVEDGIIVERGTHSE 564
Query: 262 LV 263
           L+
Sbjct: 565 LL 566

>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 101/228 (44%), Gaps = 35/228 (15%)
Query: 61  SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR--NINAFRRVSCYIQQDDR 118
             + +  +GPSG GKS+LL +++G  +  +T   L  G  R  +     R    + Q   
Sbjct: 28  EGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGVGMVFQSYA 85
Query: 119 LQPLLTIENVMSLLGLDESQNTRSSQLSGGQK----KRLSIALELINNPRVMFLDEPTTS 174
           L P L++   MS  GL         +L+G +K    +R++   E++       LD    +
Sbjct: 86  LYPHLSVAENMSF-GL---------KLAGAKKEVINQRVNQVAEVLQ--LAHLLDRKPKA 133
Query: 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQC-IKLLKMISQQGRTIICTIHQ 233
               Q++R++I   L+  P V  LD+P + LD+    Q  I++ ++  + GRT+I   H 
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 234 PSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPAD 281
                  + D++ +L  G+             ++ V  P   YH PAD
Sbjct: 194 -QVEAMTLADKIVVLDAGR-------------VAQVGKPLELYHYPAD 227

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 100/235 (42%), Gaps = 58/235 (24%)
Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-------R 101
           K  L+N+       + + + G +G+GKS+LL +++G      +G +L +G         R
Sbjct: 20  KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL-IEPTSGDVLYDGERKKGYEIRR 78
Query: 102 NI--------------NAFRRVSCYIQQ--DDRLQPLLTIENVMSLLGLD-ESQNTRSSQ 144
           NI                F  V+  ++    DR  P+  ++  M  +GLD +S   R   
Sbjct: 79  NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR-DPVPLVKKAMEFVGLDFDSFKDRVPF 137
Query: 145 -LSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTT 203
            LSGG+K+R++I                              A  +++ P ++ LDEP  
Sbjct: 138 FLSGGEKRRVAI------------------------------ASVIVHEPDILILDEPLV 167
Query: 204 GLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258
           GLD +  +  +++++     G+T+I   H    T+    D+V +L  G+ ++ G 
Sbjct: 168 GLDREGKTDLLRIVEKWKTLGKTVILISHD-IETVINHVDRVVVLEKGKKVFDGT 221

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 100/235 (42%), Gaps = 58/235 (24%)
Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-------R 101
           K  L+N+       + + + G +G+GKS+LL +++G      +G +L +G         R
Sbjct: 22  KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL-IEPTSGDVLYDGERKKGYEIRR 80
Query: 102 NI--------------NAFRRVSCYIQQ--DDRLQPLLTIENVMSLLGLD-ESQNTRSSQ 144
           NI                F  V+  ++    DR  P+  ++  M  +GLD +S   R   
Sbjct: 81  NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR-DPVPLVKKAMEFVGLDFDSFKDRVPF 139
Query: 145 -LSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTT 203
            LSGG+K+R++I                              A  +++ P ++ LDEP  
Sbjct: 140 FLSGGEKRRVAI------------------------------ASVIVHEPDILILDEPLV 169
Query: 204 GLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258
           GLD +  +  +++++     G+T+I   H    T+    D+V +L  G+ ++ G 
Sbjct: 170 GLDREGKTDLLRIVEKWKTLGKTVILISHD-IETVINHVDRVVVLEKGKKVFDGT 223

>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 118/250 (47%), Gaps = 36/250 (14%)
Query: 26  RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY 85
           R EI+FK++ ++       K++P  VLK++       Q +A++GP+G+GK++++++L  +
Sbjct: 352 RGEIEFKNVWFSYD-----KKKP--VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF 404
Query: 86  RSNGVTGQILTNGHSRNINAFRRVSCY-----IQQDDRLQPLLTIENVM-SLLGLDESQN 139
                 GQIL +G   +I   +R S       + QD  L      EN+     G  + + 
Sbjct: 405 YDVD-RGQILVDGI--DIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEI 461
Query: 140 TRSSQLSGGQK--KRLSIALELINNPRVMFLDEPTTSNPND----QKKRLSIALELINNP 193
             +++L+      K L    E +            T N  D    Q++ L+I    + NP
Sbjct: 462 KEAAKLTHSDHFIKHLPEGYETV-----------LTDNGEDLSQGQRQLLAITRAFLANP 510
Query: 194 RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC 253
           +++ LDE T+ +D+++  + I+       +G+T I   H+ +    +  D + +L  G+ 
Sbjct: 511 KILILDEATSNVDTKT-EKSIQAAMWKLMEGKTSIIIAHRLNT--IKNADLIIVLRDGEI 567
Query: 254 LYQGATDQLV 263
           +  G  D+L+
Sbjct: 568 VEMGKHDELI 577

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 102/247 (41%), Gaps = 59/247 (23%)
Query: 44  FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY------------RSNGVT 91
           FK+     L N+     + +   I+GPSGAGK++ + +++G             R     
Sbjct: 13  FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASN 72
Query: 92  GQILTNGHSR-------------NINAFRRVSCYIQ--QDDRLQPLLTIENVMSLLGLDE 136
           G+++     R             N+ AF  ++  +   +  + +    +E V  +L +  
Sbjct: 73  GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH 132
Query: 137 SQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVM 196
             N    +LSGGQ++R+++A  L                              + +P ++
Sbjct: 133 VLNHFPRELSGGQQQRVALARAL------------------------------VKDPSLL 162
Query: 197 FLDEPTTGLDSQSCSQCIKLLKMI-SQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY 255
            LDEP + LD++       L+K + S+ G T++   H P A +F + D+V +L  G+ + 
Sbjct: 163 LLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQ 221
Query: 256 QGATDQL 262
            G  + L
Sbjct: 222 VGKPEDL 228

>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 30/163 (18%)
Query: 50  DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG------HSRNI 103
           ++LK +       + ++I+G SG+GKS+LL +L G       G++   G      + + +
Sbjct: 18  EILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPTEGKVFLEGKEVDYTNEKEL 76
Query: 104 NAFR-RVSCYIQQDDRLQPLLT-IENV---------------------MSLLGLDESQNT 140
           +  R R   ++ Q   L P LT +ENV                     +S LGL +  + 
Sbjct: 77  SLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSR 136
Query: 141 RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL 183
           +  +LSGG+++R++IA  L N P ++F DEPT +  +   KR+
Sbjct: 137 KPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRV 179

>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 97/214 (45%), Gaps = 20/214 (9%)
Query: 67  IMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINAFRRVSCYIQQDDRLQPLLTI 125
           ++GP+GAGKS  L++++G       G++  NG     +   RR   ++ QD  L P L++
Sbjct: 29  LLGPTGAGKSVFLELIAGIVKPD-RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSV 87
Query: 126 ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI 185
              ++  GL   +     +      ++L IA           LD         +++R+++
Sbjct: 88  YRNIAY-GLRNVERVERDRRVREMAEKLGIA---------HLLDRKPARLSGGERQRVAL 137
Query: 186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQV 245
           A  L+  PR++ LDEP + +D ++    ++ L+ + ++    I  +         + D+V
Sbjct: 138 ARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEV 197
Query: 246 YLLSGGQCLYQGATDQL--------VNYLSSVNL 271
            ++  G+ + +G   +L          +LS+ NL
Sbjct: 198 AVMLNGRIVEKGKLKELFSAKNGEVAEFLSARNL 231

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/247 (21%), Positives = 102/247 (41%), Gaps = 59/247 (23%)
Query: 44  FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY------------RSNGVT 91
           FK+     L N+     + +   I+GPSGAGK++ + +++G             R     
Sbjct: 13  FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASN 72
Query: 92  GQILTNGHSR-------------NINAFRRVSCYI--QQDDRLQPLLTIENVMSLLGLDE 136
           G+++     R             N+ AF  ++  +   +  + +    +E V  +L +  
Sbjct: 73  GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH 132
Query: 137 SQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVM 196
             N    +LSG Q++R+++A  L+ +P ++ LDEP ++                      
Sbjct: 133 VLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSN---------------------- 170
Query: 197 FLDEPTTGLDSQSCSQCIKLLKMI-SQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY 255
                   LD++       L+K + S+ G T++   H P A +F + D+V +L  G+ + 
Sbjct: 171 --------LDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQ 221
Query: 256 QGATDQL 262
            G  + L
Sbjct: 222 VGKPEDL 228

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 106/216 (49%), Gaps = 24/216 (11%)
Query: 63  QLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQI-LTNGHSRNINAFRRVSCYIQQDDRLQ 120
           + +A++GPSG GK++ L +L+G Y+    +G+I   +    +I    R    + Q+  L 
Sbjct: 30  EFVALLGPSGCGKTTTLLMLAGIYKPT--SGEIYFDDVLVNDIPPKYREVGMVFQNYALY 87
Query: 121 PLLTI-ENVMSLLGLDESQNTRSSQLSGGQ--KKRLSIALEL-INNPRVMFLDEPTTSNP 176
           P +T+ EN+   L        R+ ++S  +  K+ + IA +L I+N     LD   T   
Sbjct: 88  PHMTVFENIAFPL--------RARRISKDEVEKRVVEIARKLLIDN----LLDRKPTQLS 135
Query: 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPS 235
             Q++R+++A  L+  P+V+  DEP + LD+         +K + Q+ G T +   H   
Sbjct: 136 GGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHD-Q 194
Query: 236 ATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNL 271
           A    M  ++ + + G+ +  G  D++  Y S  N+
Sbjct: 195 AEAMTMASRIAVFNQGKLVQYGTPDEV--YDSPKNM 228

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 111/244 (45%), Gaps = 25/244 (10%)
Query: 27  IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR 86
           + I+F D+ ++       KQ     LK++    PS    A++G +G+GKS++  +L  YR
Sbjct: 16  VNIEFSDVNFSYP-----KQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL--YR 68
Query: 87  SNGVTGQILTNG---HSRNINAFRRVSCYIQQDDRLQPLLTIENVM--SLLGLDES--QN 139
                G I   G   +  N N+ R +   + QD  L       N++   L   DE   + 
Sbjct: 69  FYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKA 128
Query: 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLD 199
           T+S+QL           +E +       +          +++R++IA  L+ +P+++  D
Sbjct: 129 TKSAQLYD--------FIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFD 180
Query: 200 EPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259
           E T+ LDS++     K ++ + ++ RT+I   H+ S       + + LL+ G+ + +G  
Sbjct: 181 EATSSLDSKTEYLFQKAVEDL-RKNRTLIIIAHRLST--ISSAESIILLNKGKIVEKGTH 237
Query: 260 DQLV 263
             L+
Sbjct: 238 KDLL 241

>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 88/218 (40%), Gaps = 61/218 (27%)
Query: 42  LGFKQEPKDVL-KNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-----------YRSNG 89
           LGF  + ++ L + L        ++A++G +G GKS+LLD+L G           Y+S G
Sbjct: 10  LGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIG 69
Query: 90  VTGQILTN------------GHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDES 137
              Q  ++            G S +IN F +   +  Q             +  L L   
Sbjct: 70  FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQ--------VAMQALDYLNLTHL 121
Query: 138 QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMF 197
                + LSGGQ++ + IA  + +  +++ LDEPT+            AL+L N   V+ 
Sbjct: 122 AKREFTSLSGGQRQLILIARAIASECKLILLDEPTS------------ALDLANQDIVLS 169
Query: 198 LDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS 235
           L                 L+ +   Q  T++ T HQP+
Sbjct: 170 L-----------------LIDLAQSQNMTVVFTTHQPN 190

>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATL 238
           Q++R+SIA  L   P V+  DEPT+ LD +   + +++++ ++++G+T++   H+     
Sbjct: 158 QQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE-MGFA 216
Query: 239 FQMFDQVYLLSGGQCLYQGATDQL 262
             +   V  L  G+   +G  +Q+
Sbjct: 217 RHVSSHVIFLHQGKIEEEGDPEQV 240

>pdb|1G29|1 Chain 1, Malk Length = 372

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 38/161 (23%)
Query: 61  SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDR-- 118
             + + ++GPSG GK++ L +++G       GQI        + A      ++   DR  
Sbjct: 28  DGEFMILLGPSGCGKTTTLRMIAGLEEPS-RGQIYIGD---KLVADPEKGIFVPPKDRDI 83
Query: 119 --------LQPLLTI----------------------ENVMSLLGLDESQNTRSSQLSGG 148
                   L P +T+                        V  LLGL E  N +  +LSGG
Sbjct: 84  AMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGG 143
Query: 149 QKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL 189
           Q++R+++   ++  P+V  +DEP ++   D K R+ +  EL
Sbjct: 144 QRQRVALGRAIVRKPQVFLMDEPLSN--LDAKLRVRMRAEL 182

>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 69/171 (40%), Gaps = 38/171 (22%)
Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVS 110
            +K+L       + + ++GPSG GK++ L  ++G       GQI       N+ A     
Sbjct: 21  AVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGL-EEPTRGQIYIED---NLVADPEKG 76
Query: 111 CYIQQDDR----------LQPLLTI----------------------ENVMSLLGLDESQ 138
            ++   +R          L P  T+                        V   LGL E  
Sbjct: 77  VFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELL 136
Query: 139 NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL 189
           N +  +LSGGQ++R+++   +I  P+V   DEP ++   D K R+    EL
Sbjct: 137 NRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSN--LDAKLRVKXRAEL 185

>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 48/191 (25%)
Query: 25  DRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDV--- 81
           + +E ++ + T  V +G+ F  +P               L+A++G +G+GKS+L+++   
Sbjct: 345 ENVEFRYFENTDPVLSGVNFSVKP-------------GSLVAVLGETGSGKSTLMNLIPR 391
Query: 82  -----------------------LSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDR 118
                                  L G+ S      +L +G  +    + R       DD 
Sbjct: 392 LIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDA---TDDE 448
Query: 119 LQPLLTIENVMS-LLGLDESQNTRSSQ----LSGGQKKRLSIALELINNPRVMFLDEPTT 173
           +     I  +   ++ L E  ++R  +     SGGQK+RLSIA  L+  P+V+ LD+ T+
Sbjct: 449 IVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTS 508
Query: 174 S-NPNDQKKRL 183
           S +P  +K+ L
Sbjct: 509 SVDPITEKRIL 519

>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATL 238
           QK+RLSIA  L+  P+V+ LD+ T+ +D  +  + +  LK  ++   T I T   P+A L
Sbjct: 484 QKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALL 543
Query: 239 FQMFDQVYLLSGGQCLYQGATDQLVNY 265
               D++ +L  G+    G   +L+ +
Sbjct: 544 ---ADKILVLHEGKVAGFGTHKELLEH 567

>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 57/183 (31%)
Query: 52  LKNLCGRF-------------PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG 98
           L+NL  RF                + + ++GPSG GK++ L +++G           T G
Sbjct: 15  LENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP-------TEG 67
Query: 99  HSRNINAFRRVSCYIQQDDR----------LQPLLTI-ENVM------------------ 129
               I    R   Y+   DR          + P +T+ EN+                   
Sbjct: 68  R---IYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVR 124
Query: 130 ---SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIA 186
               LL ++E  N   +QLSGGQ++R+++A  ++  P V+ +DEP ++   D K R+++ 
Sbjct: 125 WAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSN--LDAKLRVAMR 182
Query: 187 LEL 189
            E+
Sbjct: 183 AEI 185

>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 45/177 (25%)
Query: 52  LKNLCGRF-------------PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG 98
           L+NL  RF                + + ++GPSG GK++ L +++G       G+I    
Sbjct: 14  LENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL-EEPTEGRIYFG- 71
Query: 99  HSRNINAF----RRVSCYIQQDDRLQPLLTI-ENVM---------------------SLL 132
             R++       R +S   Q    + P +T+ EN+                       LL
Sbjct: 72  -DRDVTYLPPKDRNISMVFQSY-AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELL 129
Query: 133 GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL 189
            ++E  N   +QLSGGQ++R+++A  ++  P V+ +DEP ++   D K R+++  E+
Sbjct: 130 QIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSN--LDAKLRVAMRAEI 184

>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 98/218 (44%), Gaps = 24/218 (11%)
Query: 67  IMGPSGAGKSSLLDVLSGYRSNGVTGQI------LTNGHSRNINAFRRVSCYIQQDDRLQ 120
           I+GP+G+GKS+L++V++G+      G++      +TN     +  +  V  + Q    L+
Sbjct: 38  IIGPNGSGKSTLINVITGFLKAD-EGRVYFENKDITNKEPAELYHYGIVRTF-QTPQPLK 95
Query: 121 PLLTIENVMSLLGLDESQNTRSSQLSG--------GQKKRLSIALELINNPRVMFL-DEP 171
            +  +EN+  L+G     N   S L+          +++ +  A +++   ++  L D  
Sbjct: 96  EMTVLENL--LIG---EINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK 150
Query: 172 TTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTI 231
                  Q K + I   L+ NP+++ +DEP  G+           +  +  +G T +   
Sbjct: 151 AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIE 210
Query: 232 HQPSATLFQMFDQVYLLSGGQCLYQG-ATDQLVNYLSS 268
           H+    L    D +Y++  GQ + +G   +++ N LS 
Sbjct: 211 HRLDIVL-NYIDHLYVMFNGQIIAEGRGEEEIKNVLSD 247

>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 36/167 (21%)
Query: 42  LGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLS------------------ 83
           +G  ++ K +LK +  +        + G +GAGK++LL++L+                  
Sbjct: 27  IGRXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPG 86
Query: 84  --GYRSNGVTGQILTNGHS---------RNIN-----AFRRVSCYIQQDDRLQPLLTIEN 127
             GY +  V   I    HS         R I+     AF+ +  Y   DD ++       
Sbjct: 87  KVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRN--EAHQ 144
Query: 128 VMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
           ++ L+G           LS G+K+R+ IA  L   P+V+ LDEP   
Sbjct: 145 LLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAG 191

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 36/140 (25%)
Query: 61  SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG--------HSRNIN-------A 105
             +++ ++GPSG+GK+++L +++G       G +   G          RN+         
Sbjct: 40  EGEMVGLLGPSGSGKTTILRLIAGL-ERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYAL 98
Query: 106 FRRVSCY--------------IQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKK 151
           F+ ++ Y               + D R++ LL        + L+   N    +LSGGQ++
Sbjct: 99  FQHMTVYDNVSFGLREKRVPKDEMDARVRELL------RFMRLESYANRFPHELSGGQQQ 152
Query: 152 RLSIALELINNPRVMFLDEP 171
           R+++A  L   P+V+  DEP
Sbjct: 153 RVALARALAPRPQVLLFDEP 172

>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 117/258 (45%), Gaps = 41/258 (15%)
Query: 44  FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH---S 100
           F+  P  VL ++       +++ I+G SG GK++LL  L+G+     +G+I  +G    S
Sbjct: 14  FQNTP--VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD-SGEISLSGKTIFS 70
Query: 101 RNIN--AFRRVSCYIQQDDRLQPLLTI-ENVMSLLGLDESQNTRSSQLSGGQKKRLSIAL 157
           +N N     R   Y+ Q+  L P LT+  N+   LG   +   R++Q    +++R+   L
Sbjct: 71  KNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLG---NGKGRTAQ----ERQRIEAML 123
Query: 158 ELINNPRVMFLDEPTTSNPND----QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQC 213
           EL        + E     P++    Q++R ++A  L  +P ++ LDEP + LD Q   Q 
Sbjct: 124 ELTG------ISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQI 177
Query: 214 IK-LLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLP 272
            + ++  +   G++ +   H     L Q  D++ ++  G+ L   +  +L          
Sbjct: 178 REDMIAALRANGKSAVFVSHDREEAL-QYADRIAVMKQGRILQTASPHEL---------- 226
Query: 273 CPKYHNPADFVIELASGE 290
              Y  PAD    L  GE
Sbjct: 227 ---YRQPADLDAALFIGE 241

>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 96/217 (44%), Gaps = 22/217 (10%)
Query: 67  IMGPSGAGKSSLLDVLSGYRSNGVTGQI------LTNGHSRNINAFRRVSCYIQQDDRLQ 120
           I+GP+G+GKS+L++V++G+      G++      +TN     +  +  V  + Q    L+
Sbjct: 38  IIGPNGSGKSTLINVITGFLKAD-EGRVYFENKDITNKEPAELYHYGIVRTF-QTPQPLK 95
Query: 121 PLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNP-RVM-FL------DEPT 172
            +  +EN++    + E     S   S   KK +    E++    +++ FL      D   
Sbjct: 96  EMTVLENLL----IGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151
Query: 173 TSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIH 232
                 Q K + I   L+ NP+++ +DEP  G+           +  +  +G T +   H
Sbjct: 152 GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEH 211
Query: 233 QPSATLFQMFDQVYLLSGGQCLYQG-ATDQLVNYLSS 268
           +    L    D +Y++  GQ + +G   +++ N LS 
Sbjct: 212 RLDIVL-NYIDHLYVMFNGQIIAEGRGEEEIKNVLSD 247

>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 98/218 (44%), Gaps = 24/218 (11%)
Query: 67  IMGPSGAGKSSLLDVLSGYRSNGVTGQI------LTNGHSRNINAFRRVSCYIQQDDRLQ 120
           I+GP+G+GKS+L++V++G+      G++      +TN     +  +  V  + Q    L+
Sbjct: 38  IIGPNGSGKSTLINVITGFLKAD-EGRVYFENKDITNKEPAELYHYGIVRTF-QTPQPLK 95
Query: 121 PLLTIENVMSLLGLDESQNTRSSQLSG--------GQKKRLSIALELINNPRVMFL-DEP 171
            +  +EN+  L+G     N   S L+          +++ +  A +++   ++  L D  
Sbjct: 96  EMTVLENL--LIG---EINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK 150
Query: 172 TTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTI 231
                  Q K + I   L+ NP+++ +D+P  G+           +  +  +G T +   
Sbjct: 151 AGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIE 210
Query: 232 HQPSATLFQMFDQVYLLSGGQCLYQG-ATDQLVNYLSS 268
           H+    L    D +Y++  GQ + +G   +++ N LS 
Sbjct: 211 HRLDIVL-NYIDHLYVMFNGQIIAEGRGEEEIKNVLSD 247

>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 112/257 (43%), Gaps = 27/257 (10%)
Query: 29  IKFKDLTYTVSTGLGFKQEPKD-VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YR 86
           ++F+D+++       +   P   VL+ L       ++ A++GP+G+GKS++  +L   Y+
Sbjct: 15  VQFQDVSFA------YPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 68
Query: 87  SNGVTGQILTNGHSRNINAFR---RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSS 143
             G  GQ+L +G        R   R    + Q+ ++      EN+   L    +Q     
Sbjct: 69  PTG--GQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGL----TQKPTME 122
Query: 144 QLSGGQKKRLSIALELINNPRVMF---LDEPTTSNPNDQKKRLSIALELINNPRVMFLDE 200
           +++    K  S A   I+     +   +DE  +     Q++ +++A  LI  P V+ LD+
Sbjct: 123 EITAAAVK--SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDD 180
Query: 201 PTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260
            T+ LD+ S  Q  +LL    ++    +  I Q   +L +  D +  L GG     G   
Sbjct: 181 ATSALDANSQLQVEQLLYESPERYSRSVLLITQ-HLSLVEQADHILFLEGGAIREGGTHQ 239
Query: 261 QLVN----YLSSVNLPC 273
           QL+     Y + V  P 
Sbjct: 240 QLMEKKGCYWAMVQAPA 256

>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 102/216 (47%), Gaps = 20/216 (9%)
Query: 61  SNQLIAIMGPSGAGKSSLLDVLSG-YRSNG--VTGQILTNGHS---------RNINAFRR 108
            N + AI+G S +GKS++++ ++     NG  ++G++L  G           R I  ++ 
Sbjct: 33  ENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIR-WKE 91
Query: 109 VSCYIQQDDR-LQPLL-TIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM 166
           ++   Q   + L P +  IE+    +     + + S  +    +K   + L    NP  +
Sbjct: 92  IALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRL----NPEAV 147
Query: 167 FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRT 226
               P   +    K+R+ IAL L+ +P V+ LDEPT+ LD  + +  I+LLK + +  + 
Sbjct: 148 LNSYPLQLS-GGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKI 206
Query: 227 IICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
            +  +    A   ++ D+V ++ GG  +   +T Q+
Sbjct: 207 TLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQI 242

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 87/187 (46%), Gaps = 35/187 (18%)
Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DV 81
           I+F+++ ++ + G       ++ L+++       Q +A++GPSGAGKS++L       D+
Sbjct: 54  IEFENVHFSYADG-------RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI 106
Query: 82  LSG----------------YRSN-GVTGQ---ILTNGHSRNINAFRRVSCYIQQDDRLQP 121
            SG                 RS+ GV  Q   +  +  + NI   R  +   + +   Q 
Sbjct: 107 SSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQA 166
Query: 122 LLTIENVMSL-LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQK 180
               + +M+   G       R  +LSGG+K+R++IA  ++  P ++ LDE T++     +
Sbjct: 167 AGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNE 226
Query: 181 KRLSIAL 187
           + +  +L
Sbjct: 227 RAIQASL 233

>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 80/179 (44%), Gaps = 42/179 (23%)
Query: 29  IKFKDLTYTVSTGLGFKQEPK-DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YR 86
           +KF+D+++       +   P   VL+ L       ++ A++GP+G+GKS++  +L   Y+
Sbjct: 17  VKFQDVSFA------YPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70
Query: 87  SNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLL-----------------TIENVM 129
             G  G++L +G          +   +    + +PLL                 T+E + 
Sbjct: 71  PTG--GKVLLDGEPLVQYDHHYLHTQVAAVGQ-EPLLFGRSFRENIAYGLTRTPTMEEIT 127
Query: 130 SLL--------------GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
           ++               G D       +QLSGGQ++ +++A  LI  PR++ LD+ T++
Sbjct: 128 AVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSA 186

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	606
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	7e-24
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	4e-23
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	4e-23
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	3e-20
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	2e-13
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	1e-19
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	3e-19
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	4e-19
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	7e-19
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	1e-18
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	2e-18
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	2e-14
1sgw_A	214	Putative ABC transporter; structural genomics, P p	2e-17
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	2e-17
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	2e-13
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	2e-16
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	7e-16
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	3e-16
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	5e-16
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	1e-11
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	5e-16
2ghi_A	260	Transport protein; multidrug resistance protein, M	1e-15
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	5e-15
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	1e-14
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	2e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	8e-14
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	7e-09
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	1e-13
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	3e-13
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	1e-12
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	1e-12
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	2e-12
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	2e-12
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	5e-12
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	5e-12
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	1e-11
1g6h_A	257	High-affinity branched-chain amino acid transport	3e-11
1b0u_A	262	Histidine permease; ABC transporter, transport pro	6e-11
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	9e-11
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	2e-09
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	2e-09
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	5e-09
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	8e-09
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	2e-08
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	3e-08
1ji0_A	240	ABC transporter; ATP binding protein, structural g	5e-08
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	5e-08
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	1e-07
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	1e-07
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	5e-07
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	8e-07
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	1e-05
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	7e-05

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score =  100 bits (252), Expect = 7e-24
 Identities = 59/300 (19%), Positives = 107/300 (35%), Gaps = 83/300 (27%)

Query: 9   SNSLSSSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIM 68
           S+      SG     +  + I+   +           ++ K +LK +  +        + 
Sbjct: 3   SHHHHHHSSGLVPRGSHML-IQLDQIG--------RMKQGKTILKKISWQIAKGDKWILY 53

Query: 69  GPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR-----NINAFRR----VSCYIQQDDRL 119
           G +GAGK++LL++L+ Y     +G +   G        +    R+    VS  + +  + 
Sbjct: 54  GLNGAGKTTLLNILNAY-EPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLE--KF 110

Query: 120 QPLLTIENV--------------------------MSLLGLDESQNTRSSQLSGGQKKRL 153
           Q    + +V                          + L+G+          LS G+K+R+
Sbjct: 111 QEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRV 170

Query: 154 SIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQC 213
            IA       R                     A  L+  P+V+ LDEP  GLD  +    
Sbjct: 171 MIA-------R---------------------A--LMGQPQVLILDEPAAGLDFIARESL 200

Query: 214 IKLLKMISQQGR--TIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNL 271
           + +L  +S       +I   H     +   F ++ LL  GQ + QGA + +   L+S N+
Sbjct: 201 LSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDGQSIQQGAVEDI---LTSENM 256

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 98.0 bits (245), Expect = 4e-23
 Identities = 57/236 (24%), Positives = 97/236 (41%), Gaps = 52/236 (22%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF-- 106
              L  L G   + +++ ++GP+GAGKS+LL  ++G  S    G I   G  + + A+  
Sbjct: 13  STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--KGSIQFAG--QPLEAWSA 68

Query: 107 ----RRVSCYIQQDDRLQPLLT-----------------IENVMSLLGLDESQNTRSSQL 145
                  + Y+ Q                          + +V   L LD+     ++QL
Sbjct: 69  TKLALHRA-YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQL 127

Query: 146 SGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL 205
           SGG+ +R+ +A        V+                L I  +     +++ LDEP   L
Sbjct: 128 SGGEWQRVRLA-------AVV----------------LQITPQANPAGQLLLLDEPMNSL 164

Query: 206 DSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ 261
           D    S   K+L  +SQQG  I+ + H  + TL +   + +LL GG+ L  G  ++
Sbjct: 165 DVAQQSALDKILSALSQQGLAIVMSSHDLNHTL-RHAHRAWLLKGGKMLASGRREE 219

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 98.0 bits (245), Expect = 4e-23
 Identities = 49/295 (16%), Positives = 112/295 (37%), Gaps = 56/295 (18%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           I+  ++++    G   +++    L+N+       + + + G +G+GKS+LL ++      
Sbjct: 3   IEVVNVSHIFHRGTPLEKK---ALENVSLVINEGECLLVAGNTGSGKSTLLQIV-----A 54

Query: 89  GV----TGQILTNGHSRNINAFRR-------------VSCYIQQDDRLQPLLTIENVMSL 131
           G+    +G +L +G  +     RR              +  +  +         +N    
Sbjct: 55  GLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAV----KN---- 106

Query: 132 LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPND----QKKRLSIAL 187
              D                 +  A+E +      F D      P      +K+R++IA 
Sbjct: 107 FYPDRDP-----------VPLVKKAMEFVGLDFDSFKDRV----PFFLSGGEKRRVAIAS 151

Query: 188 ELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYL 247
            +++ P ++ LDEP  GLD +  +  +++++     G+T+I   H    T+    D+V +
Sbjct: 152 VIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVV 210

Query: 248 LSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASGEYGVDNINAMVEQ 302
           L  G+ ++ G   +    L   +             + L   +    + + ++E+
Sbjct: 211 LEKGKKVFDGTRMEF---LEKYDPRFFTSKMLVMRRLVLKGEDPFSMSDDELLER 262

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 93.9 bits (234), Expect = 3e-20
 Identities = 42/233 (18%), Positives = 86/233 (36%), Gaps = 50/233 (21%)

Query: 10  NSLSSSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMG 69
           N    +E+          +++    +   S     K +   VL    G F  ++++ +MG
Sbjct: 326 NLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMG 385

Query: 70  PSGAGKSSLLDVLSG-YRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLT---- 124
            +G GK++L+ +L+G  + +   GQ +      N+ + +      +    ++ L      
Sbjct: 386 ENGTGKTTLIKLLAGALKPDE--GQDIPKL---NV-SMKPQKIAPKFPGTVRQLFFKKIR 439

Query: 125 --------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNP 176
                     +V+  L +D+  +     LSGG+ +R++I L                   
Sbjct: 440 GQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVL------------------- 480

Query: 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK-MISQQGRTII 228
                    A  L     +  +DEP+  LDS+    C K+++  I    +T  
Sbjct: 481 ---------A--LGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 41/264 (15%), Positives = 88/264 (33%), Gaps = 80/264 (30%)

Query: 48  PKDVLKNLCGRFPSN-------------QLIAIMGPSGAGKSSLLDVLSG--------YR 86
           P ++  ++  R+ +N             Q++ ++G +G GKS+ L +L+G        + 
Sbjct: 76  PTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFD 135

Query: 87  SNGVTGQILTNGHSRNI-NAFRRV----------SCYIQQ--DDRLQPLLT--------- 124
                 +I+       + N F ++            Y+         P+           
Sbjct: 136 DPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM 195

Query: 125 ------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPND 178
                 ++  + +L L+        +LSGG+                             
Sbjct: 196 EKSPEDVKRYIKILQLENVLKRDIEKLSGGEL---------------------------- 227

Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATL 238
           Q  R +I +  +    V   DEP++ LD +      ++++ +    + +IC  H   + L
Sbjct: 228 Q--RFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL-SVL 284

Query: 239 FQMFDQVYLLSGGQCLYQGATDQL 262
             + D V ++ G   +Y   T   
Sbjct: 285 DYLSDFVCIIYGVPSVYGVVTLPA 308

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 87.8 bits (218), Expect = 1e-19
 Identities = 46/252 (18%), Positives = 81/252 (32%), Gaps = 65/252 (25%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           I+ K++  T    L  K   +  L+N+       + + I+GP+G+GK++LL  +SG    
Sbjct: 2   IQLKNVGIT----LSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPY 56

Query: 89  GVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPL-LTI-ENV-----------------M 129
             +G I  NG    +   R    Y         + +T+ + V                 +
Sbjct: 57  --SGNIFING--MEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEML 112

Query: 130 SLLGLDESQNTRS-SQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALE 188
             L L E    R   +LS GQ   +  +                                
Sbjct: 113 KALKLGEEILRRKLYKLSAGQSVLVRTS-------LA----------------------- 142

Query: 189 LINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIH-QPSATLFQMFDQVYL 247
           L + P ++ LDEP   +D+       + +K   + G+  I   H           +    
Sbjct: 143 LASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTHELDML--NLYKEYKAY 197

Query: 248 LSGGQCLYQGAT 259
              G  L    +
Sbjct: 198 FLVGNRLQGPIS 209

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 85.6 bits (213), Expect = 3e-19
 Identities = 50/238 (21%), Positives = 94/238 (39%), Gaps = 74/238 (31%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVL------ 82
           ++ +++   +           ++LK +       + ++I+G SG+GKS+LL +L      
Sbjct: 5   LRAENIKKVIRGY--------EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP 56

Query: 83  -SG-YRSNGVTGQILTNGHSRN-INAFRRVSC-YIQQDDRLQPLLT-IENVM-------- 129
             G     G       +  +   ++  R     ++ Q   L P LT +ENV+        
Sbjct: 57  TEGKVFLEGKE----VDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGK 112

Query: 130 -------------SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNP 176
                        S LGL +  + +  +LSGG+++R++IA       R            
Sbjct: 113 PKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIA-------RA----------- 154

Query: 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQP 234
                       L N P ++F DEPT  LDS +  + + +   I++ G +I+   H+ 
Sbjct: 155 ------------LANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER 200

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 86.1 bits (214), Expect = 4e-19
 Identities = 45/189 (23%), Positives = 74/189 (39%), Gaps = 57/189 (30%)

Query: 69  GPSGAGKSSLLDVLSGY-RSNGVTGQILTNGHS--RNINAFRRVSCYIQQDDRLQPLLT- 124
           GP+GAGK++ L ++S   + +   G +   G +     +  R++  Y+ ++      +  
Sbjct: 48  GPNGAGKTTTLRIISTLIKPSS--GIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQG 105

Query: 125 ---------------------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNP 163
                                +E    + GL E    R S  S G               
Sbjct: 106 IEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKG--------------- 150

Query: 164 RVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ 223
             M              ++L IA  L+ NPR+  LDEPT+GLD  +  +  K+LK  SQ+
Sbjct: 151 --M-------------VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 195

Query: 224 GRTIICTIH 232
           G TI+ + H
Sbjct: 196 GLTILVSSH 204

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 86.1 bits (214), Expect = 7e-19
 Identities = 68/295 (23%), Positives = 110/295 (37%), Gaps = 86/295 (29%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           +K ++L Y  S G          LK +       ++ AI+G +G GKS+L         N
Sbjct: 8   LKVEELNYNYSDG-------THALKGINMNIKRGEVTAILGGNGVGKSTLFQNF-----N 55

Query: 89  GV----TGQILTNGH-----SRNINAFRR-------------VSCYIQQD---------- 116
           G+    +G+IL +        + I   R               S  + QD          
Sbjct: 56  GILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKL 115

Query: 117 DRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNP 176
              +    ++N +   G++  ++  +  LS GQKKR++IA  L     VM          
Sbjct: 116 PEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVL-----VM---------- 160

Query: 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPS 235
                           P+V+ LDEPT GLD    S+ +KLL  + ++ G TII   H   
Sbjct: 161 ---------------EPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID 205

Query: 236 ATLFQMFDQVYLLSGGQCLYQGATDQL---VNYLSSVNLPCPKYHNPADFVIELA 287
                  D V+++  G+ + QG   ++      +  VNL  P        +  L 
Sbjct: 206 IVP-LYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLP-------RIGHLM 252

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 84.5 bits (210), Expect = 1e-18
 Identities = 49/242 (20%), Positives = 87/242 (35%), Gaps = 68/242 (28%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTN----------- 97
             + + L        ++A++G +G GKS+LLD+L G     + G+I              
Sbjct: 18  NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP-IQGKIEVYQSIGFVPQFFS 76

Query: 98  -------------GHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQ 144
                        G S +IN F +       D ++         +  L L        + 
Sbjct: 77  SPFAYSVLDIVLMGRSTHINTFAKPK---SHDYQV-----AMQALDYLNLTHLAKREFTS 128

Query: 145 LSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTG 204
           LSGGQ++             ++                  IA  + +  +++ LDEPT+ 
Sbjct: 129 LSGGQRQL------------IL------------------IARAIASECKLILLDEPTSA 158

Query: 205 LDSQSCSQCIKLLKMISQ-QGRTIICTIHQP-SATLFQMFDQVYLLSGGQCLYQGATDQL 262
           LD  +    + LL  ++Q Q  T++ T HQP         ++  LL+       G T  +
Sbjct: 159 LDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAI--ANKTLLLNKQN-FKFGETRNI 215

Query: 263 VN 264
           + 
Sbjct: 216 LT 217

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 87.8 bits (218), Expect = 2e-18
 Identities = 36/199 (18%), Positives = 64/199 (32%), Gaps = 48/199 (24%)

Query: 44  FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI 103
            K+     L    G     ++I I+GP+G GK++   +L G       G +      + +
Sbjct: 276 IKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVG-EITADEGSVTPEK--QIL 332

Query: 104 NAFRRVSCYIQQDDRLQPLLT-------------IENVMSLLGLDESQNTRSSQLSGGQK 150
           +   +   +   D  +Q  L               E V   L L     +  + LSGG+ 
Sbjct: 333 SYKPQRI-FPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGEL 391

Query: 151 KRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSC 210
                                       Q  +L IA  L     +  LD+P++ LD +  
Sbjct: 392 ----------------------------Q--KLYIAATLAKEADLYVLDQPSSYLDVEER 421

Query: 211 SQCIKLLK-MISQQGRTII 228
               K +K +  ++     
Sbjct: 422 YIVAKAIKRVTRERKAVTF 440

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 75.1 bits (185), Expect = 2e-14
 Identities = 40/265 (15%), Positives = 90/265 (33%), Gaps = 77/265 (29%)

Query: 32  KDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG---YRSN 88
            ++ +      GFK       K       +N ++ ++G +G GK+++L +L+G       
Sbjct: 3   GEVIHRYKVN-GFKLFGLPTPK-------NNTILGVLGKNGVGKTTVLKILAGEIIPNFG 54

Query: 89  GVTGQILTNGHSRNINAFR--RVSCYIQQ--DDRLQPLLTIENV---------------- 128
               ++  +     +  FR   +  Y ++   + L+ +  I+ V                
Sbjct: 55  DPNSKVGKD---EVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILT 111

Query: 129 -----------MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPN 177
                        LL +    N  ++ LSGG  +R            ++           
Sbjct: 112 KIDERGKKDEVKELLNMTNLWNKDANILSGGGLQR------------LL----------- 148

Query: 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSAT 237
                  +A  L+    V   D+P++ LD +      K ++ +  + + +I   H     
Sbjct: 149 -------VAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL-LKNKYVIVVDHD-LIV 199

Query: 238 LFQMFDQVYLLSGGQCLYQGATDQL 262
           L  + D ++++ G   +Y   +   
Sbjct: 200 LDYLTDLIHIIYGESSVYGRVSKSY 224

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 80.6 bits (200), Expect = 2e-17
 Identities = 36/226 (15%), Positives = 82/226 (36%), Gaps = 66/226 (29%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY-RS 87
           ++ +DL+             K VL+ +        ++   GP+G GK++LL  +S Y + 
Sbjct: 11  LEIRDLS---------VGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP 61

Query: 88  NGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLT--------------------IEN 127
               G+I+ NG    I   +    ++ ++  +   ++                    I +
Sbjct: 62  L--KGEIIYNGV--PITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMD 117

Query: 128 VMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL 187
            +  + + + +  +  +LS G  +R+ +A                              L
Sbjct: 118 ALESVEVLDLKK-KLGELSQGTIRRVQLA----------------------------STL 148

Query: 188 ELINNPRVMFLDEPTTGLDSQSCSQCIKLLK-MISQQGRTIICTIH 232
             + N  +  LD+P   +D  S  + +K +  ++ ++G  II +  
Sbjct: 149 --LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE 192

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 85.1 bits (211), Expect = 2e-17
 Identities = 33/176 (18%), Positives = 63/176 (35%), Gaps = 39/176 (22%)

Query: 20  SLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL 79
            +      E    +    V      K      L+   G     ++I I+GP+G GK++ +
Sbjct: 340 EIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFV 399

Query: 80  DVLSG--------------------YRS---NGVTGQILTNGHSRNINAFRRVSCYIQQD 116
            +L+G                    Y      G   ++L+   S  +N+           
Sbjct: 400 KMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYK------- 452

Query: 117 DRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
                      ++  LG+ +  +     LSGG+ +R++IA  L+ +  +  LDEP+
Sbjct: 453 ---------TELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPS 499

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 72.3 bits (178), Expect = 2e-13
 Identities = 28/174 (16%), Positives = 59/174 (33%), Gaps = 29/174 (16%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG---- 84
           I   +L   +      +      +           ++ I+GP+G GK++ + +L+G    
Sbjct: 84  ISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIP 143

Query: 85  -YRSNGVTGQILTNGHSRN------------------------INAFRRVSCYIQQDDRL 119
               +  +   +      N                        +          +   ++
Sbjct: 144 NLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV 203

Query: 120 QPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT 173
             +   E V+  L L+   +    QLSGG+ +R++IA  L+      F DEP++
Sbjct: 204 DEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSS 257

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 82.8 bits (205), Expect = 2e-16
 Identities = 69/288 (23%), Positives = 122/288 (42%), Gaps = 83/288 (28%)

Query: 13  SSSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSG 72
           S S+SG   +      ++FK++ ++  +    +     +LK L  +  S Q +A++G SG
Sbjct: 373 SFSKSGHKPDNIQG-NLEFKNIHFSYPSRKEVQ-----ILKGLNLKVKSGQTVALVGNSG 426

Query: 73  AGKSSLLDVLSG-YRSNGVTGQILTNGH---SRNINAFRRVSCYIQQDDRLQPLL---TI 125
            GKS+ + ++   Y  + + G +  +G    + N+   R +   + Q+    P+L   TI
Sbjct: 427 CGKSTTVQLMQRLY--DPLDGMVSIDGQDIRTINVRYLREIIGVVSQE----PVLFATTI 480

Query: 126 -ENVMSLLGLDESQ------------------------NT----RSSQLSGGQKKRLSIA 156
            EN+    G ++                          +T    R +QLSGGQK+R++IA
Sbjct: 481 AENI--RYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIA 538

Query: 157 LELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKL 216
                  R                        L+ NP+++ LDE T+ LD++S +     
Sbjct: 539 -------RA-----------------------LVRNPKILLLDEATSALDTESEAVVQAA 568

Query: 217 LKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
           L     +GRT I   H+ S T+ +  D +    GG  + QG  D+L+ 
Sbjct: 569 LDKAR-EGRTTIVIAHRLS-TV-RNADVIAGFDGGVIVEQGNHDELMR 613

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 80.9 bits (200), Expect = 7e-16
 Identities = 65/297 (21%), Positives = 103/297 (34%), Gaps = 99/297 (33%)

Query: 13   SSSESGTSLETADRIEIKFKDLTYTVSTGLGFK--QEPKD-VLKNLCGRFPSNQLIAIMG 69
            S S  G      +   ++F  +         F     P   VL+ L       Q +A++G
Sbjct: 1016 SYSTQGLKPNMLEG-NVQFSGVV--------FNYPTRPSIPVLQGLSLEVKKGQTLALVG 1066

Query: 70   PSGAGKS---SLL----DVLSGYRSNGVTGQILTNGH---SRNINAFRRVSCYIQQDDRL 119
             SG GKS    LL    D ++G         +  +G      N+   R     + Q+   
Sbjct: 1067 SSGCGKSTVVQLLERFYDPMAG--------SVFLDGKEIKQLNVQWLRAQLGIVSQE--- 1115

Query: 120  QPLL---TI-EN---------------------------VMSL-LGLDESQNTRSSQLSG 147
             P+L   +I EN                           + SL    +     + +QLSG
Sbjct: 1116 -PILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSG 1174

Query: 148  GQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDS 207
            GQK+R++IA       R                        L+  P ++ LDE T+ LD+
Sbjct: 1175 GQKQRIAIA-------RA-----------------------LVRQPHILLLDEATSALDT 1204

Query: 208  QSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
            +S     + L     +GRT I   H+ S    Q  D + ++  G+    G   QL+ 
Sbjct: 1205 ESEKVVQEALDKAR-EGRTCIVIAHRLSTI--QNADLIVVIQNGKVKEHGTHQQLLA 1258

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 77.6 bits (192), Expect = 3e-16
 Identities = 60/242 (24%), Positives = 101/242 (41%), Gaps = 73/242 (30%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVL------ 82
           +K K++T T   G    +E    LKN+       + ++IMGPSG+GKS++L+++      
Sbjct: 2   VKLKNVTKTYKMG----EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP 57

Query: 83  -SG-YRSNGVTGQILTNGHSRNINAFRRVSC-YIQQDDRLQPLLT-IENVM--------- 129
             G    + +    L       +   RR    ++ Q   L PLLT +ENV          
Sbjct: 58  TEGEVYIDNIKTNDLD---DDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRG 114

Query: 130 ---------------SLLGL-DESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT 173
                           +  L +   N + +QLSGGQ++R++IA       R         
Sbjct: 115 AMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIA-------RA-------- 159

Query: 174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMI-SQQGRTIICTIH 232
                          L NNP ++  D+PT  LDS++  + ++LLK +  + G+T++   H
Sbjct: 160 ---------------LANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204

Query: 233 QP 234
             
Sbjct: 205 DI 206

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 80.0 bits (198), Expect = 5e-16
 Identities = 36/233 (15%), Positives = 79/233 (33%), Gaps = 70/233 (30%)

Query: 20  SLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL 79
            ++     E    +    V+     K      L+   G     ++I I+GP+G GK++ +
Sbjct: 270 EIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFV 329

Query: 80  DVLSG--------------------YRSN---GVTGQILTNGHSRNINAFRRVSCYIQQD 116
            +L+G                    Y      G   ++L+   +  +N+           
Sbjct: 330 KMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYK------- 382

Query: 117 DRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNP 176
                      ++  LG+ +  +   ++LSGG+                           
Sbjct: 383 ---------TELLKPLGIIDLYDREVNELSGGEL-------------------------- 407

Query: 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK-MISQQGRTII 228
             Q  R++IA  L+ +  +  LDEP+  LD +      + ++ ++ +  +T +
Sbjct: 408 --Q--RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 66.2 bits (162), Expect = 1e-11
 Identities = 36/235 (15%), Positives = 77/235 (32%), Gaps = 70/235 (29%)

Query: 61  SNQLIAIMGPSGAGKSSLLDVLSG-----YRSNGVTGQILTNG--------HSRNI---- 103
              ++ I+GP+G GKS+ + +L+G        +  +   +           +   +    
Sbjct: 46  EGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGE 105

Query: 104 ------------NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKK 151
                                I+   +      +E V+  L L+         LSGG+ +
Sbjct: 106 IRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQ 165

Query: 152 RLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCS 211
           R            V                   IA  L+ N    F DEP++ LD +   
Sbjct: 166 R------------VA------------------IAAALLRNATFYFFDEPSSYLDIRQRL 195

Query: 212 QCIKLLKMISQQGRTIICTIHQPSAT-----LFQMFDQVYLLSGGQCLYQGATDQ 261
              + ++ +S++G++++              L  + D ++++ G   +Y   +  
Sbjct: 196 NAARAIRRLSEEGKSVLV------VEHDLAVLDYLSDIIHVVYGEPGVYGIFSQP 244

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 77.1 bits (191), Expect = 5e-16
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 38/175 (21%)

Query: 28  EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YR 86
           +I F+++ +       +K +   +L N+       ++I I+G SG+GKS+L  ++   Y 
Sbjct: 7   DITFRNIRFR------YKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60

Query: 87  SNGVTGQILTNGH---SRNINAFRRVSCYIQQDDRL------------QPLLTIENVMS- 130
                GQ+L +GH     + N  RR    + QD+ L             P +++E V+  
Sbjct: 61  PEN--GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYA 118

Query: 131 ---------LLGLDESQNT----RSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
                    +  L E  NT    + + LSGGQ++R++IA  L+NNP+++  DE T
Sbjct: 119 AKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEAT 173

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 76.1 bits (188), Expect = 1e-15
 Identities = 63/280 (22%), Positives = 116/280 (41%), Gaps = 71/280 (25%)

Query: 15  SESGTSLETADRIEIKFKDLTYTVSTGLGFKQEP-KDVLKNLCGRFPSNQLIAIMGPSGA 73
           S S TS E    + I+F D+ +       + ++     LK++    PS    A++G +G+
Sbjct: 4   SFSLTSHEKKFGVNIEFSDVNF------SYPKQTNHRTLKSINFFIPSGTTCALVGHTGS 57

Query: 74  GKSSLLDVLSGYRSNGVTGQILTNGH---SRNINAFRRVSCYIQQDDRL----------- 119
           GKS++  +L  YR     G I   G      N N+ R +   + QD  L           
Sbjct: 58  GKSTIAKLL--YRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILY 115

Query: 120 -QPLLTIENVMS----------LLGLDESQNT----RSSQLSGGQKKRLSIALELINNPR 164
            +   T E V+           +  L +  +T    +  +LSGG+++R++IA       R
Sbjct: 116 GKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIA-------R 168

Query: 165 VMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQG 224
                                   L+ +P+++  DE T+ LDS++     K ++ +  + 
Sbjct: 169 C-----------------------LLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-KN 204

Query: 225 RTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
           RT+I   H+ S T+    + + LL+ G+ + +G    L+ 
Sbjct: 205 RTLIIIAHRLS-TISSA-ESIILLNKGKIVEKGTHKDLLK 242

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 74.5 bits (184), Expect = 5e-15
 Identities = 53/258 (20%), Positives = 91/258 (35%), Gaps = 90/258 (34%)

Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKS---SLL----DVLSGYRSNGVTGQILTNGH---S 100
           VL+ L       ++ A++GP+G+GKS   +LL        G        ++L +G     
Sbjct: 34  VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG--------KVLLDGEPLVQ 85

Query: 101 RNINAFRRVSCYIQQDDRLQPLL---TI-ENVMSLLGLDESQ------------------ 138
            + +        + Q+    PLL   +  EN+    GL  +                   
Sbjct: 86  YDHHYLHTQVAAVGQE----PLLFGRSFRENI--AYGLTRTPTMEEITAVAMESGAHDFI 139

Query: 139 -------NT----RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL 187
                  +T      +QLSGGQ++ +++A       R                       
Sbjct: 140 SGFPQGYDTEVGETGNQLSGGQRQAVALA-------RA---------------------- 170

Query: 188 ELINNPRVMFLDEPTTGLDSQSCSQCIKLL-KMISQQGRTIICTIHQPSATLFQMFDQVY 246
            LI  PR++ LD  T+ LD+ +  +  +LL +      RT++    Q S    +    + 
Sbjct: 171 -LIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS-LA-ERAHHIL 227

Query: 247 LLSGGQCLYQGATDQLVN 264
            L  G    QG   QL+ 
Sbjct: 228 FLKEGSVCEQGTHLQLME 245

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 73.4 bits (181), Expect = 1e-14
 Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 39/155 (25%)

Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS-NGV----TGQILTNGH-----S 100
           VLK +       +++ ++GPSG+GKS+ L      R  N +     G+I+ +G       
Sbjct: 39  VLKGINVHIREGEVVVVIGPSGSGKSTFL------RCLNLLEDFDEGEIIIDGINLKAKD 92

Query: 101 RNINAFRRVSCYIQQDDRLQPLLTI-ENV-------------------MSLL---GLDES 137
            N+N  R     + Q   L P +T+  N+                   M LL   GL + 
Sbjct: 93  TNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDK 152

Query: 138 QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
            +     LSGGQ +R++IA  L   P++M  DEPT
Sbjct: 153 AHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPT 187

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 72.1 bits (178), Expect = 2e-14
 Identities = 42/187 (22%), Positives = 74/187 (39%), Gaps = 60/187 (32%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKS---SLL----DV 81
           +  + + +            + +L+++      N +IA  GPSG GKS   SLL      
Sbjct: 2   LSARHVDFAYDDS-------EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP 54

Query: 82  LSGYRSNGVTGQILTNGH---SRNINAFRRVSCYIQQDDRLQPLL---TI-EN------- 127
            +G        +I  +G    + ++  +R    ++ QD      +   TI EN       
Sbjct: 55  TAG--------EITIDGQPIDNISLENWRSQIGFVSQD----SAIMAGTIRENLTYGLEG 102

Query: 128 -------------------VMSL-LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMF 167
                              V ++   L+     R  ++SGGQ++RL+IA   + NP+++ 
Sbjct: 103 DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILM 162

Query: 168 LDEPTTS 174
           LDE T S
Sbjct: 163 LDEATAS 169

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 75.7 bits (185), Expect = 2e-14
 Identities = 85/604 (14%), Positives = 174/604 (28%), Gaps = 154/604 (25%)

Query: 8   LSNSLSSSESGTSLETADRIEIK---------FKDLTYTVSTGLGFKQEPKDVLKNLCGR 58
           L + + + +   S+ T   IE +         F    Y VS     + +P   L+     
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK--YNVS-----RLQPYLKLRQALLE 146

Query: 59  FPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT----GQI--LTNGHSRNINAFRRVSCY 112
               + + I G  G+GK+ +   L    S  V      +I  L   +  +          
Sbjct: 147 LRPAKNVLIDGVLGSGKTWV--ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV------ 198

Query: 113 IQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMF-LDEP 171
           ++    LQ LL   +       D S N +    S   +  L   L+       +  L   
Sbjct: 199 LEM---LQKLLYQIDPNWTSRSDHSSNIKLRIHSI--QAELRRLLKSKPYENCLLVLLN- 252

Query: 172 TTSNPNDQK------KRL------SIALELINNPR-VMFLDEPTTGL-DSQSCSQCIKLL 217
              N           K L       +   L       + LD  +  L   +  S  +K L
Sbjct: 253 -VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 218 KMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYH 277
               Q     + T + P      +  +   +  G   +        N+         K+ 
Sbjct: 312 DCRPQDLPREVLTTN-P--RRLSIIAE--SIRDGLATWD-------NW---------KH- 349

Query: 278 NPADFVIELASGEYGVDNINAMVEQAQNDVKPDKKTKKTKHCTYSNQILQDTSYSNQLGV 337
                           D +  ++E + N ++P     + +       +            
Sbjct: 350 -------------VNCDKLTTIIESSLNVLEPA----EYRKMFDRLSVFPP-------SA 385

Query: 338 LLSRGLLKVK-RDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHV 396
            +   LL +   D   + + ++VN      L  + +   E   S+    ++   + +   
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSL--VEKQPKESTISI---PSIYLELKVK-- 438

Query: 397 MTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTG 456
               + N     +  SI+  +H    Y++   + S +L+   +  +    ++ I + L  
Sbjct: 439 ----LENEYA--LHRSIV--DH----YNIPKTFDSDDLIPPYLDQY---FYSHIGHHLKN 483

Query: 457 QPMELT-RFTMFNCTSLLVVFIAQSV---GYMVGAVFNVVNGTFVGPVLVVPMMMFSGFG 512
             +E   R T+F    L   F+ Q +        A  +++N                   
Sbjct: 484 --IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN------------------- 522

Query: 513 VSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDELYCHYKEPKKFLQTVSQP 572
            ++  +  Y        Y+      Y   +  +     + +E     K     L+     
Sbjct: 523 -TLQQLKFYKP------YICDNDPKYERLVNAILDFLPKIEENLICSKY-TDLLRIALMA 574

Query: 573 SDNF 576
            D  
Sbjct: 575 EDEA 578

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 9e-09
 Identities = 76/550 (13%), Positives = 160/550 (29%), Gaps = 175/550 (31%)

Query: 102 NINAFRR-VSCY-IQQDDRLQPLLTIENVMSLLGL-DESQNTRS--SQLSGGQKKRLSIA 156
             +AF     C  +Q  D  + +L+ E +  ++   D    T      L   Q++ +   
Sbjct: 25  FEDAFVDNFDCKDVQ--DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82

Query: 157 LELINNPRVMFLDEPTTSNPNDQKKRLSIALELINN-------------PRVMFLDEPTT 203
           +E +      FL  P  +          + +E  +               R+    +   
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142

Query: 204 GLDSQSCSQCIKLLKMISQQGRTI----ICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259
            L     ++ + +  ++   G+T     +C          +M  +++ L+   C      
Sbjct: 143 ALLELRPAKNVLIDGVLGS-GKTWVALDVC---LSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 260 -DQLVNYLSSVNLPCPKYHNPADFVIELASG-EYGVDNINAMVEQAQN--------DVKP 309
            + L   L  ++   P + + +D    +          +  +++            +V+ 
Sbjct: 199 LEMLQKLLYQID---PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ- 254

Query: 310 DKKTKKT--KHCTYSNQIL---QDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVA 364
           + K        C    +IL   +    ++ L    +  +       TLT           
Sbjct: 255 NAKAWNAFNLSC----KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP---------- 300

Query: 365 LMLGVLFQNSGEYASSVLINY-NLLFSILIHHVMTSMMLNILTFPMEMSI---LIKEHFN 420
                      +   S+L+ Y +     L   V+T       T P  +SI    I++   
Sbjct: 301 -----------DEVKSLLLKYLDCRPQDLPREVLT-------TNPRRLSIIAESIRDGLA 342

Query: 421 RWYSLKAYY---------VSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTS 471
            W + K             S+N+L+                     P E  +  MF+   
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLE---------------------PAEYRK--MFD--- 376

Query: 472 LLVVFIAQSVGYMVGAVFNVVNGTFVGP--VLVV---------PMMMFSGFGVSINDIPK 520
            L VF   S         ++       P  +L +          M++       +N + K
Sbjct: 377 RLSVF-PPSA--------HI-------PTILLSLIWFDVIKSDVMVV-------VNKLHK 413

Query: 521 Y---MRWGSELSYLRYGLEGYVAAIYGLDRKTL-QCDELYC-------HYKEPKKFLQT- 568
           Y    +   E +           +I  +  +   + +  Y        HY  PK F    
Sbjct: 414 YSLVEKQPKESTI----------SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463

Query: 569 -VSQPSDNFW 577
            +    D ++
Sbjct: 464 LIPPYLDQYF 473

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 73.9 bits (181), Expect = 8e-14
 Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 29/141 (20%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR 108
           K +L     R    +   I GP+G GKS+L+  ++     G      T    R       
Sbjct: 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN----GQVDGFPTQEECR------- 496

Query: 109 VSCYIQQD-DRLQPLLT---------------IENVMSLLGL-DESQNTRSSQLSGGQKK 151
            + Y++ D D      +               I++ +   G  DE      S LSGG K 
Sbjct: 497 -TVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKM 555

Query: 152 RLSIALELINNPRVMFLDEPT 172
           +L++A  ++ N  ++ LDEPT
Sbjct: 556 KLALARAVLRNADILLLDEPT 576

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 58.1 bits (140), Expect = 7e-09
 Identities = 28/174 (16%), Positives = 51/174 (29%), Gaps = 20/174 (11%)

Query: 19  TSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRF-PSNQLIAIMGPSGAGKSS 77
           T  E         +D            +   + +  +        ++  I        + 
Sbjct: 756 TPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTY 815

Query: 78  LLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLL-------------- 123
             +       N               NA+      ++   ++   +              
Sbjct: 816 EYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPL 875

Query: 124 ---TIENVMSLLGL--DESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
               IE   S+LGL  +   ++R   LSGGQK +L +A      P ++ LDEPT
Sbjct: 876 TRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPT 929

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 72.0 bits (177), Expect = 1e-13
 Identities = 65/264 (24%), Positives = 111/264 (42%), Gaps = 67/264 (25%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDV--LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR 86
           IK  ++T        F Q  + +  L N+    P+ Q+  ++G SGAGKS+L+  ++   
Sbjct: 25  IKLSNITKV------FHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE 78

Query: 87  --SNG---VTGQILTNGHSRNINAFRR-VSCYIQQDDRLQPLLTIENVM----------- 129
             + G   V GQ LT      +   RR +    Q  + L       NV            
Sbjct: 79  RPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD 138

Query: 130 ----------SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQ 179
                     SL+GL +  ++  S LSGGQK+R++IA  L +NP+V+             
Sbjct: 139 EVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVL------------- 185

Query: 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATL 238
              L               D+ T+ LD  +    ++LLK I+++ G TI+   H+    +
Sbjct: 186 ---LC--------------DQATSALDPATTRSILELLKDINRRLGLTILLITHEMDV-V 227

Query: 239 FQMFDQVYLLSGGQCLYQGATDQL 262
            ++ D V ++S G+ + Q    ++
Sbjct: 228 KRICDCVAVISNGELIEQDTVSEV 251

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 71.5 bits (176), Expect = 3e-13
 Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 51/184 (27%)

Query: 28  EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YR 86
           E+  KD+T        ++ + K  L ++    P  + +A++G SG+GKS++ ++ +  Y 
Sbjct: 341 EVDVKDVT------FTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD 394

Query: 87  SNGVTGQILTNGHSRNINAFRRVS-----CYIQQDDRLQPLL---TIEN----------- 127
            +   G I  +GH  ++  ++  +       + Q+      L   TI N           
Sbjct: 395 VDS--GSICLDGH--DVRDYKLTNLRRHFALVSQN----VHLFNDTIANNIAYAAEGEYT 446

Query: 128 ----------------VMSL-LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDE 170
                           + ++  GLD       + LSGGQ++R++IA  L+ +  V+ LDE
Sbjct: 447 REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDE 506

Query: 171 PTTS 174
            T++
Sbjct: 507 ATSA 510

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 67.6 bits (166), Expect = 1e-12
 Identities = 56/267 (20%), Positives = 105/267 (39%), Gaps = 74/267 (27%)

Query: 28  EIKFKDLTYTVSTGLGFKQEP-KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR 86
            I+F+++         F     ++ L+++       Q +A++GPSGAGKS++L +L  +R
Sbjct: 53  RIEFENVH--------FSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL--FR 102

Query: 87  SNGVT-GQILTNGHS-RNI--NAFRRVSCYIQQDDRL------------QPLLTIENVMS 130
              ++ G I  +G     +   + R     + QD  L            +     + V +
Sbjct: 103 FYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEA 162

Query: 131 ----------LLGLDESQNT----RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNP 176
                     ++   E   T    R  +LSGG+K+R++IA       R            
Sbjct: 163 AAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIA-------RT----------- 204

Query: 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSA 236
                       ++  P ++ LDE T+ LD+ +       L  +    RT I   H+ S 
Sbjct: 205 ------------ILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLS- 250

Query: 237 TLFQMFDQVYLLSGGQCLYQGATDQLV 263
           T+    DQ+ ++  G  + +G  + L+
Sbjct: 251 TVVNA-DQILVIKDGCIVERGRHEALL 276

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 66.0 bits (162), Expect = 2e-12
 Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 40/157 (25%)

Query: 62  NQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG--------HSRNIN-AFRRVSCY 112
                ++GP+GAGKS  L++++G       G++  NG          R I          
Sbjct: 24  RDYCVLLGPTGAGKSVFLELIAGIVKPD-RGEVRLNGADITPLPPERRGIGFVP------ 76

Query: 113 IQQDDRLQPLLTI-ENV-------------------MSLLGLDESQNTRSSQLSGGQKKR 152
             QD  L P L++  N+                      LG+    + + ++LSGG+++R
Sbjct: 77  --QDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQR 134

Query: 153 LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL 189
           +++A  L+  PR++ LDEP  S   D K +  +  EL
Sbjct: 135 VALARALVIQPRLLLLDEP-LSAV-DLKTKGVLMEEL 169

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 68.8 bits (169), Expect = 2e-12
 Identities = 39/184 (21%), Positives = 81/184 (44%), Gaps = 51/184 (27%)

Query: 28  EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YR 86
           +++F+++T+       +       L+N+  + P+ + +A++G SG+GKS++  +++  Y 
Sbjct: 341 DLEFRNVTF------TYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD 394

Query: 87  SNGVTGQILTNGHSRNINAFRRVS-----CYIQQDDRLQPLL---TIEN----------- 127
            +   G IL +GH  ++  +   S       + Q+      L   T+ N           
Sbjct: 395 IDE--GHILMDGH--DLREYTLASLRNQVALVSQN----VHLFNDTVANNIAYARTEEYS 446

Query: 128 ----------------VMSL-LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDE 170
                           +  +  GLD         LSGGQ++R++IA  L+ +  ++ LDE
Sbjct: 447 REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDE 506

Query: 171 PTTS 174
            T++
Sbjct: 507 ATSA 510

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 67.6 bits (166), Expect = 5e-12
 Identities = 52/183 (28%), Positives = 80/183 (43%), Gaps = 50/183 (27%)

Query: 28  EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YR 86
            I    +++       +      +LK++       + +A +G SG GKS+L++++   Y 
Sbjct: 339 RIDIDHVSF------QYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD 392

Query: 87  SNGVTGQILTNGHSRNINAFRRVSC-----YIQQDDRLQPLL---TI-EN---------- 127
                GQIL +GH  NI  F   S       +QQD     +L   T+ EN          
Sbjct: 393 VTS--GQILIDGH--NIKDFLTGSLRNQIGLVQQD----NILFSDTVKENILLGRPTATD 444

Query: 128 ---------------VMSL-LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
                          +M+L  G D     R  +LSGGQK+RLSIA   +NNP ++ LDE 
Sbjct: 445 EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEA 504

Query: 172 TTS 174
           T++
Sbjct: 505 TSA 507

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 66.5 bits (163), Expect = 5e-12
 Identities = 35/152 (23%), Positives = 68/152 (44%), Gaps = 40/152 (26%)

Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT-GQILTNG--------HSR 101
            ++ +  +    +++ ++GPSG+GK+++L +++G      T G +   G          R
Sbjct: 30  SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRVTDLPPQKR 87

Query: 102 NIN------------------AF----RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQN 139
           N+                   +F    +RV    + D R++ LL        + L+   N
Sbjct: 88  NVGLVFQNYALFQHMTVYDNVSFGLREKRVP-KDEMDARVRELL------RFMRLESYAN 140

Query: 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
               +LSGGQ++R+++A  L   P+V+  DEP
Sbjct: 141 RFPHELSGGQQQRVALARALAPRPQVLLFDEP 172

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 65.5 bits (159), Expect = 1e-11
 Identities = 28/163 (17%), Positives = 53/163 (32%), Gaps = 26/163 (15%)

Query: 86  RSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQL 145
                              A    + + +       +   EN + L  + E +    + L
Sbjct: 190 VKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFL 249

Query: 146 SGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL 205
           SGG++  L +A                         RL+++L L     ++ LDEPT  L
Sbjct: 250 SGGERIALGLAF------------------------RLAMSLYLAGEISLLILDEPTPYL 285

Query: 206 DSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL 248
           D +   + I +++   ++   +I   H     L    D V  +
Sbjct: 286 DEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHVIRI 326

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 63.3 bits (155), Expect = 3e-11
 Identities = 32/150 (21%), Positives = 61/150 (40%), Gaps = 42/150 (28%)

Query: 62  NQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHS-RNINAFRRVSCYIQ---QD 116
             +  I+GP+G+GKS+L++V++G  +++   G++        N          I    Q 
Sbjct: 33  GDVTLIIGPNGSGKSTLINVITGFLKADE--GRVYFENKDITNKEPAELYHYGIVRTFQT 90

Query: 117 DRLQPLLT-IENVM----------------------------------SLLGLDESQNTR 141
            +    +T +EN++                                    L L    + +
Sbjct: 91  PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK 150

Query: 142 SSQLSGGQKKRLSIALELINNPRVMFLDEP 171
           + +LSGGQ K + I   L+ NP+++ +DEP
Sbjct: 151 AGELSGGQMKLVEIGRALMTNPKMIVMDEP 180

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 62.2 bits (152), Expect = 6e-11
 Identities = 41/163 (25%), Positives = 60/163 (36%), Gaps = 43/163 (26%)

Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLL-----------------DVLSGYRSNGVTGQ 93
           VLK +  +  +  +I+I+G SG+GKS+ L                         +     
Sbjct: 21  VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDK--DG 78

Query: 94  ILTNGHSRNINAFRRVSCYIQQDDRLQPLLTI-ENVM-------------------SLL- 132
            L       +   R     + Q   L   +T+ ENVM                     L 
Sbjct: 79  QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLA 138

Query: 133 --GLDESQNTRS-SQLSGGQKKRLSIALELINNPRVMFLDEPT 172
             G+DE    +    LSGGQ++R+SIA  L   P V+  DEPT
Sbjct: 139 KVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPT 181

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 63.0 bits (154), Expect = 9e-11
 Identities = 30/138 (21%), Positives = 59/138 (42%), Gaps = 43/138 (31%)

Query: 65  IAIMGPSGAGKSSLLDVLSGYRSNGVT-GQILTNG--------HSRNIN----------- 104
             I+GP+GAGK+  L++++G+       G+IL +G           +I            
Sbjct: 29  FVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPH 86

Query: 105 -------AF----RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL 153
                   F    +++        R      + +    L ++   +     LSGG+++R+
Sbjct: 87  MNVKKNLEFGMRMKKIK----DPKR------VLDTARDLKIEHLLDRNPLTLSGGEQQRV 136

Query: 154 SIALELINNPRVMFLDEP 171
           ++A  L+ NP+++ LDEP
Sbjct: 137 ALARALVTNPKILLLDEP 154

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 58.7 bits (143), Expect = 2e-09
 Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 48/175 (27%)

Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT-GQILTNG----------- 98
           VL ++       +++ I+G SG GK++LL  L+G+       G+I  +G           
Sbjct: 19  VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTIFSKNTNLP 76

Query: 99  -HSRNIN-AFRRVSCYIQQDDRLQPLLTI-ENV---------------------MSLLGL 134
              R +            Q+  L P LT+  N+                     + L G+
Sbjct: 77  VRERRLGYLV--------QEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGI 128

Query: 135 DESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL 189
            E       +LSGGQ++R ++A  L  +P ++ LDEP  S   D++ R  I  ++
Sbjct: 129 SELAGRYPHELSGGQQQRAALARALAPDPELILLDEP-FSAL-DEQLRRQIREDM 181

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 34/181 (18%), Positives = 64/181 (35%), Gaps = 48/181 (26%)

Query: 28  EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
           ++  KDLT   + G         +L+N+       Q + ++G +G+GKS+LL      R 
Sbjct: 19  QMTVKDLTAKYTEGGNA------ILENISFSISPGQRVGLLGRTGSGKSTLLSAF--LRL 70

Query: 88  NGVTGQILTNGHSRNINAF-----RRVSCYIQQDDRLQPLL---TI-------------- 125
               G+I  +G   + ++      R+    I Q       +   T               
Sbjct: 71  LNTEGEIQIDG--VSWDSITLEQWRKAFGVIPQK----VFIFSGTFRKNLDPNAAHSDQE 124

Query: 126 -----------ENVMSL-LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT 173
                        +      LD         LS G K+ + +A  +++  +++ LDEP+ 
Sbjct: 125 IWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSA 184

Query: 174 S 174
            
Sbjct: 185 H 185

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 56.0 bits (136), Expect = 5e-09
 Identities = 54/267 (20%), Positives = 98/267 (36%), Gaps = 84/267 (31%)

Query: 28  EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG--Y 85
           E+  +++T        +++    VLK++  +    QL+A+ G +GAGK+SLL ++ G   
Sbjct: 6   EVVMENVTAF------WEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 59

Query: 86  RSNG---VTGQI--------LTNGHSR-NI--------NAFRRV--SCYIQQDDRLQPLL 123
            S G    +G+I        +  G  + NI          +R V  +C +++D       
Sbjct: 60  PSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFA-- 117

Query: 124 TIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL 183
             E    +LG  E        LSGGQ+ R+S+A  +  +  +  LD P            
Sbjct: 118 --EKDNIVLG--E----GGITLSGGQRARISLARAVYKDADLYLLDSP-----------F 158

Query: 184 S-----IALELINNPRVMFLDEPTTGLDSQSCSQCIK-LLKMISQQGRTIICTIHQPSAT 237
                    E+  +                    C+  L+       +T I    +    
Sbjct: 159 GYLDVLTEKEIFES--------------------CVCKLMA-----NKTRILVTSK--ME 191

Query: 238 LFQMFDQVYLLSGGQCLYQGATDQLVN 264
             +  D++ +L  G   + G   +L N
Sbjct: 192 HLKKADKILILHEGSSYFYGTFSELQN 218

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score = 56.2 bits (136), Expect = 8e-09
 Identities = 60/295 (20%), Positives = 101/295 (34%), Gaps = 80/295 (27%)

Query: 2   AQVEFELSNSLSSSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKD---VLKNLCGR 58
           +  E  + N  +  E G         +      T      L F         VLK++  +
Sbjct: 1   STTEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFK 60

Query: 59  FPSNQLIAIMGPSGAGKSSLLDVLSG--YRSNG---VTGQI--------LTNGHSR-NI- 103
               QL+A+ G +GAGK+SLL ++ G    S G    +G+I        +  G  + NI 
Sbjct: 61  IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENII 120

Query: 104 ------NAFRRV--SCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSI 155
                   +R V  +C +++D         E    +LG  E        LSGGQ+ R+S+
Sbjct: 121 GVSYDEYRYRSVIKACQLEEDISKFA----EKDNIVLG--E----GGITLSGGQRARISL 170

Query: 156 ALELINNPRVMFLDEPTTSNPNDQKKRLS-----IALELINNPRVMFLDEPTTGLDSQSC 210
           A  +  +  +  LD P                     E+  +                  
Sbjct: 171 ARAVYKDADLYLLDSP-----------FGYLDVLTEKEIFES------------------ 201

Query: 211 SQCI-KLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
             C+ KL+       +T I    +      +  D++ +L  G   + G   +L N
Sbjct: 202 --CVCKLMA-----NKTRILVTSK--MEHLKKADKILILHEGSSYFYGTFSELQN 247

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 29/128 (22%)

Query: 106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSS-QLSGGQKKRLSIALELINNPR 164
           F   +     +  ++       +     +      R    LSGG++  L +A        
Sbjct: 22  FAEFTEGKYSEVVVRAEENKVRL----FVVWEGKERPLTFLSGGERIALGLAF------- 70

Query: 165 VMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQG 224
                            RL+++L L     ++ LDEPT  LD +   + I +++   ++ 
Sbjct: 71  -----------------RLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKI 113

Query: 225 RTIICTIH 232
             +I   H
Sbjct: 114 PQVILVSH 121

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score = 54.1 bits (131), Expect = 3e-08
 Identities = 55/265 (20%), Positives = 95/265 (35%), Gaps = 80/265 (30%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG--YR 86
           I  ++ T+T      + +     L  +    P   L+A++G  G GKSSLL  L     +
Sbjct: 4   ITVRNATFT------WARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK 57

Query: 87  SNG---VTGQI--------LTNGHSR-NI--------NAFRRV--SCYIQQDDRLQPLLT 124
             G   + G +        + N   R NI          +R V  +C +  D  + P   
Sbjct: 58  VEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILP--- 114

Query: 125 IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS 184
                + +G  E    +   LSGGQK+R+S+A  + +N  +   D+P           LS
Sbjct: 115 -SGDRTEIG--E----KGVNLSGGQKQRVSLARAVYSNADIYLFDDP-----------LS 156

Query: 185 -----IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLF 239
                +   +  N                     I    M+  + +T I   H    +  
Sbjct: 157 AVDAHVGKHIFEN--------------------VIGPKGML--KNKTRILVTHS--MSYL 192

Query: 240 QMFDQVYLLSGGQCLYQGATDQLVN 264
              D + ++SGG+    G+  +L+ 
Sbjct: 193 PQVDVIIVMSGGKISEMGSYQELLA 217

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 53.2 bits (129), Expect = 5e-08
 Identities = 53/242 (21%), Positives = 101/242 (41%), Gaps = 62/242 (25%)

Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINAFRRV 109
            +K +  + P  Q++ ++G +GAGK++ L  ++G       G+I+ NG    N  A    
Sbjct: 21  AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-AQKGKIIFNGQDITNKPAHVIN 79

Query: 110 S---CYIQQDDRLQPLLTI-ENVMSLLG-----------------------LDESQNTRS 142
                 + +  R+ P LT+ EN+M  +G                       L E      
Sbjct: 80  RMGIALVPEGRRIFPELTVYENLM--MGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG 137

Query: 143 SQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPT 202
             LSGG+              + M                L+I   L++ P+++ +DEP+
Sbjct: 138 GTLSGGE--------------QQM----------------LAIGRALMSRPKLLMMDEPS 167

Query: 203 TGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
            GL     S+  ++++ I+Q+G TI+  + Q +    ++    Y+L  GQ + +G   +L
Sbjct: 168 LGLAPILVSEVFEVIQKINQEGTTIL-LVEQNALGALKVAHYGYVLETGQIVLEGKASEL 226

Query: 263 VN 264
           ++
Sbjct: 227 LD 228

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250

 Score = 53.3 bits (129), Expect = 5e-08
 Identities = 42/156 (26%), Positives = 66/156 (42%), Gaps = 32/156 (20%)

Query: 47  EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT-GQILTNGHS----- 100
           + + +LK +    P  ++ A+MGP+GAGKS+L  +L+G     V  G+IL +G +     
Sbjct: 14  DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS 73

Query: 101 ---R------------------NINAFRRVSCYIQQDDRLQP---LLTIENVMSLLGLDE 136
              R                   I  F R++   +    +        ++  + LL  DE
Sbjct: 74  PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDE 133

Query: 137 SQNTRS--SQLSGGQKKRLSIALELINNPRVMFLDE 170
           S  +R      SGG+KKR  I   L+  P    LDE
Sbjct: 134 SYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDE 169

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score = 53.7 bits (130), Expect = 1e-07
 Identities = 38/172 (22%), Positives = 69/172 (40%), Gaps = 38/172 (22%)

Query: 28  EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
            + F+++ +       + +    VL  +        L+A++G +G+GKS+L++++   R 
Sbjct: 341 SVSFENVEFR------YFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIP--RL 392

Query: 88  NGVT-GQILTNGHS-RNIN--AFRRVSCYIQQ---------------------DDRLQPL 122
                G++  +    R +     R     + Q                     DD +   
Sbjct: 393 IDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEA 452

Query: 123 LTI----ENVMSL-LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLD 169
             I    + ++SL  G D          SGGQK+RLSIA  L+  P+V+ LD
Sbjct: 453 AKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILD 504

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 43/160 (26%), Positives = 63/160 (39%), Gaps = 36/160 (22%)

Query: 47  EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT-GQILTNGHS----- 100
           E K +L+ L       ++ AIMGP+G+GKS+L   L+G     VT G +   G       
Sbjct: 31  EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALS 90

Query: 101 ---R------------------NINAFRRVSCYIQQDDRLQPLLT-------IENVMSLL 132
              R                  +   F + +    +  R Q  L        +E  ++LL
Sbjct: 91  PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALL 150

Query: 133 GLDESQNTRS--SQLSGGQKKRLSIALELINNPRVMFLDE 170
            + E   TRS     SGG+KKR  I    +  P +  LDE
Sbjct: 151 KMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDE 190

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score = 51.8 bits (125), Expect = 5e-07
 Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 44/162 (27%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHSRNINAFR 107
           K VLK++       Q +A++GP+G+GK++++++L   Y  +   GQIL +G   +I   +
Sbjct: 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDR--GQILVDGI--DIRKIK 423

Query: 108 RVS-----CYIQQDDRLQPLL---TI-EN-------------------------VMSL-L 132
           R S       + QD     +L   T+ EN                         +  L  
Sbjct: 424 RSSLRSSIGIVLQD----TILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPE 479

Query: 133 GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
           G +         LS GQ++ L+I    + NP+++ LDE T++
Sbjct: 480 GYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSN 521

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 50.6 bits (121), Expect = 8e-07
 Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 28/141 (19%)

Query: 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM 166
           + ++    + D     + +     +     +       LSGG++  ++++L         
Sbjct: 243 KYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSL--------- 293

Query: 167 FLDEPTTSNPNDQKKRLSIALELINNP-RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGR 225
                          RL+IA  LI N    + LDEPT  LD    ++  ++ + +    +
Sbjct: 294 ---------------RLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQ 338

Query: 226 TIICTIHQPSATLFQMFDQVY 246
            II T H     L  + D + 
Sbjct: 339 MIIIT-HHRE--LEDVADVII 356

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 41/187 (21%), Positives = 77/187 (41%), Gaps = 56/187 (29%)

Query: 51  VLKNLCGRFPSNQLIAI---------------MGPSGAGKSSLLDVLSGYRSNGVT-GQI 94
           ++KN+   F   +++A+               +GPSGAGK++ + +++G      + G++
Sbjct: 5   IVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGEL 62

Query: 95  LTNGHSRNINAFRRVSCYIQQDDR----------LQPLLT-------------------- 124
             +   R +         +  +DR          L P LT                    
Sbjct: 63  YFDD--RLVA--SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIR 118

Query: 125 --IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKR 182
             +E V  +L +    N    +LSG Q++R+++A  L+ +P ++ LDEP  SN  D + R
Sbjct: 119 KRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEP-FSNL-DARMR 176

Query: 183 LSIALEL 189
            S    +
Sbjct: 177 DSARALV 183

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Length = 365

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 25/123 (20%)

Query: 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRS-SQLSGGQKKRLSIALELINNPRV 165
           +R   Y+      +  +  ++      + +    R    LSGG++  +SI+L        
Sbjct: 241 KRTKAYLDILTNGRFDIDFDDEKGGFIIKDWGIERPARGLSGGERALISISL-------- 292

Query: 166 MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGR 225
                            +S+A          F+DE  + LD+++  +   +LK + +  +
Sbjct: 293 ----------------AMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNK 336

Query: 226 TII 228
            I+
Sbjct: 337 VIV 339

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	606
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	100.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	100.0
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	100.0
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	100.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	100.0
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	100.0
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	100.0
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	100.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	100.0
2ghi_A	260	Transport protein; multidrug resistance protein, M	100.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	100.0
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	100.0
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	100.0
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	100.0
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	100.0
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	100.0
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	100.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	100.0
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	100.0
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.98
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.98
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.97
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.97
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.97
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.96
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.96
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.96
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.95
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.95
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.94
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.93
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.92
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.91
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.91
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.89
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.89
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.86
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.85
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.85
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.84
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.84
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.84
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.83
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.83
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.82
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.82
2og2_A	359	Putative signal recognition particle receptor; nuc	99.81
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.81
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.81
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.8
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.8
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.79
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.79
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.77
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.77
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.77
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.76
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.76
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.75
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.75
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.73
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.72
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.7
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.7
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.69
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.69
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.69
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.69
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.68
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.68
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.68
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.67
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.66
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.66
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.65
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.62
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.6
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.58
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.57
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.56
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.53
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.53
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.5
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.48
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.48
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.45
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.45
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.42
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.42
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.42
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.42
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.4
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.37
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.36
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.35
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.34
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.32
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	99.31
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.31
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.31
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.3
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.28
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	99.24
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	99.14
2r6a_A	454	DNAB helicase, replicative helicase; replication,	99.13
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.12
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.11
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.08
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.08
1p9r_A	418	General secretion pathway protein E; bacterial typ	99.06
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	99.03
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	99.02
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.01
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.0
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.94
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.91
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.88
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.87
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.86
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.84
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.82
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.79
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.72
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.69
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.69
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.67
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.64
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.63
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.61
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.6
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	98.59
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.56
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	98.39
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.39
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	98.38
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.35
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	98.33
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.31
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.31
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.3
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	98.28
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.23
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.22
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.22
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.21
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.21
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.2
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.19
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.19
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.18
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.17
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.1
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.05
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.05
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.03
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.01
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.98
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.97
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.94
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.92
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.84
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.8
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.8
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.77
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.76
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.76
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.73
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.72
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.7
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.66
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.64
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	97.61
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.6
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.6
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.6
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.56
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.5
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.49
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.48
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.45
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.45
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.42
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.39
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.37
3ice_A	422	Transcription termination factor RHO; transcriptio	97.36
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.34
3bos_A	242	Putative DNA replication factor; P-loop containing	97.34
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.33
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.29
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.28
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.23
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.19
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.18
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.15
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.14
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.1
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	97.1
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.07
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.05
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.04
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.03
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.02
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.0
3io5_A	333	Recombination and repair protein; storage dimer, i	96.99
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.96
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.96
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.95
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.94
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.93
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.9
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	96.89
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	96.88
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.88
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.81
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.81
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.78
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	96.77
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	96.7
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.69
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.68
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	96.67
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.65
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.61
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.61
2qgz_A	308	Helicase loader, putative primosome component; str	96.59
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.58
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.57
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.53
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.53
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.5
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	96.49
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.45
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	96.45
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.44
3co5_A	143	Putative two-component system transcriptional RES	96.43
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.39
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.38
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.31
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	96.3
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.3
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.3
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	96.3
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.26
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.24
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.23
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.23
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.21
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.21
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.2
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.17
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.17
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.15
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.13
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.12
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.08
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.03
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.02
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	95.99
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	95.98
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	95.97
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.96
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	95.95
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	95.93
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	95.91
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.9
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	95.89
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	95.88
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	95.87
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.87
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	95.8
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	95.79
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.78
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	95.75
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	95.74
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	95.7
1via_A	175	Shikimate kinase; structural genomics, transferase	95.68
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	95.65
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	95.61
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	95.61
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.58
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	95.56
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	95.55
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	95.5
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.45
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	95.44
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.4
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	95.38
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	95.37
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	95.36
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	95.36
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	95.34
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	95.33
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.33
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	95.33
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	95.29
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	95.26
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	95.26
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	95.26
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.25
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.24
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	95.22
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	95.21
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	95.18
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	95.18
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	95.18
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	95.14
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	95.13
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	95.12
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.11
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	95.1
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	95.08
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	95.06
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	95.06
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	95.05
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.04
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	95.04
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	95.02
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.0
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	95.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	95.0
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	94.99
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	94.99
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	94.98
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	94.98
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	94.96
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	94.95
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	94.95
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	94.94
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	94.92
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	94.91
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	94.89
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	94.89
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	94.87
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	94.84
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	94.84
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	94.84
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	94.83
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	94.82
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	94.82
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	94.82
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	94.81
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	94.81
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	94.81
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	94.8
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	94.8
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	94.77
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	94.77
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	94.73
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	94.7
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	94.7
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	94.7
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	94.69
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	94.69
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	94.67
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	94.61
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	94.59
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	94.58
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	94.57
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	94.56
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	94.56
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	94.56
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	94.54
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	94.53
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	94.5
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	94.49
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	94.48
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	94.46
1nrj_B	218	SR-beta, signal recognition particle receptor beta	94.45
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	94.42
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	94.4
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	94.4
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	94.39
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	94.39
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	94.38
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	94.37
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	94.37
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	94.34
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	94.34
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	94.33
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	94.32
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	94.32
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	94.27
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	94.26
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	94.26
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	94.25
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	94.24
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	94.24
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	94.23
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	94.22
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	94.22
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	94.21
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	94.2
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	94.2
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	94.2
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	94.2
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	94.19
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	94.19
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	94.18
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	94.16
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	94.14
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	94.14
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	94.12
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	94.1
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	94.1
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	94.07
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	94.04
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	94.04
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	94.04
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	94.03
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	94.02
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	94.01
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	93.98
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	93.97
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	93.95
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	93.95
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	93.95
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	93.94
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	93.94
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	93.94
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	93.92
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	93.92
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	93.92
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	93.9
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	93.89
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	93.89
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	93.87
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	93.8
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	93.78
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	93.77
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	93.77
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	93.76
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	93.75
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	93.71
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	93.69
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	93.68
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	93.66
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	93.63
3llu_A	196	RAS-related GTP-binding protein C; structural geno	93.63
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	93.62
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	93.62
2fh5_B	214	SR-beta, signal recognition particle receptor beta	93.61
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	93.6
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	93.55
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	93.55
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	93.55
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	93.53
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	93.53
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	93.52
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	93.5
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	93.48
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	93.46
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	93.42
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	93.39
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	93.37
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	93.35
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	93.34
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	93.33
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	93.28
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	93.24
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	93.19
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	93.19
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	93.15
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	93.14
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	93.13
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	93.02

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=4e-46  Score=394.52  Aligned_cols=222  Identities=26%  Similarity=0.381  Sum_probs=183.1

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---  103 (606)
                      ..|+++||+++|..+    .+.+.+|+|||++|++||+++|+||||||||||+|+|+|+.+| .+|+|.++|++...   
T Consensus        23 ~mi~v~~ls~~y~~~----~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p-~~G~I~i~G~~i~~~~~   97 (366)
T 3tui_C           23 HMIKLSNITKVFHQG----TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQELTTLSE   97 (366)
T ss_dssp             CCEEEEEEEEEEECS----SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEETTEECSSCCH
T ss_pred             ceEEEEeEEEEeCCC----CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC-CceEEEECCEECCcCCH
Confidence            359999999998532    1345799999999999999999999999999999999999887 59999999987532   


Q ss_pred             ---hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchh
Q psy13765        104 ---NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQ  179 (606)
Q Consensus       104 ---~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~  179 (606)
                         ...|+.+|||||++.+++.+||.+.+... +.      ..+.+..+ ++|+.-+.+.+.-.+  ..|.++..|||||
T Consensus        98 ~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~-~~------~~~~~~~~~~~~v~~lL~~vgL~~--~~~~~~~~LSGGq  168 (366)
T 3tui_C           98 SELTKARRQIGMIFQHFNLLSSRTVFGNVALP-LE------LDNTPKDEVKRRVTELLSLVGLGD--KHDSYPSNLSGGQ  168 (366)
T ss_dssp             HHHHHHHTTEEEECSSCCCCTTSCHHHHHHHH-HH------HSCCCHHHHHHHHHHHHHHHTCGG--GTTCCTTTSCHHH
T ss_pred             HHHHHHhCcEEEEeCCCccCCCCCHHHHHHHH-HH------hcCCCHHHHHHHHHHHHHHcCCch--HhcCChhhCCHHH
Confidence               23467899999999999999996655431 11      01123333 445554455544332  4688888899999


Q ss_pred             hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      ||||+|||||+.+|++|||||||||||+.++..++++|++++++ |+|||++|||++ .+.++|||+++|++|++++.|+
T Consensus       169 kQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~G~iv~~g~  247 (366)
T 3tui_C          169 KQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQDT  247 (366)
T ss_dssp             HHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEETTEEEECCB
T ss_pred             HHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcC
Confidence            99999999999999999999999999999999999999999765 999999999986 5778999999999999999999


Q ss_pred             hhHHH
Q psy13765        259 TDQLV  263 (606)
Q Consensus       259 ~~~~~  263 (606)
                      ++++.
T Consensus       248 ~~ev~  252 (366)
T 3tui_C          248 VSEVF  252 (366)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99875

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=7e-46  Score=380.57  Aligned_cols=220  Identities=28%  Similarity=0.396  Sum_probs=175.5

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--h-
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--I-  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--~-  103 (606)
                      ..|+++||+++|+       +.+.+|+|||++|++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++..  . 
T Consensus         6 ~~l~i~~ls~~y~-------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p-~~G~I~~~G~~i~~~~~   77 (275)
T 3gfo_A            6 YILKVEELNYNYS-------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP-SSGRILFDNKPIDYSRK   77 (275)
T ss_dssp             EEEEEEEEEEECT-------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEETTEECCCSHH
T ss_pred             cEEEEEEEEEEEC-------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-CCeEEEECCEECCcccc
Confidence            3699999999973       234599999999999999999999999999999999999877 5999999998763  1 


Q ss_pred             --hhhcccEEEEccCCC-CCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchh
Q psy13765        104 --NAFRRVSCYIQQDDR-LQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQ  179 (606)
Q Consensus       104 --~~~~~~~~yv~Q~~~-l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~  179 (606)
                        ..+++.+|||+|++. .+..+||.+.+... +..      ..++..+ ++|+.-+.+.+.-.  -+.|.++..|||||
T Consensus        78 ~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~-~~~------~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgGq  148 (275)
T 3gfo_A           78 GIMKLRESIGIVFQDPDNQLFSASVYQDVSFG-AVN------MKLPEDEIRKRVDNALKRTGIE--HLKDKPTHCLSFGQ  148 (275)
T ss_dssp             HHHHHHHSEEEECSSGGGTCCSSBHHHHHHHH-HHT------SCCCHHHHHHHHHHHHHHTTCG--GGTTSBGGGSCHHH
T ss_pred             cHHHHhCcEEEEEcCcccccccCcHHHHHHHH-HHH------cCCCHHHHHHHHHHHHHHcCCc--hhhcCCcccCCHHH
Confidence              345778999999973 34468886655431 100      1233333 34444333333221  15677788888888


Q ss_pred             hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMIS-QQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      ||||+||+||+.+|++|||||||+|||+.++..++++|++++ ++|+|||++||+++. +.++|||+++|++|++++.|+
T Consensus       149 kQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~-~~~~~drv~~l~~G~i~~~g~  227 (275)
T 3gfo_A          149 KKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI-VPLYCDNVFVMKEGRVILQGN  227 (275)
T ss_dssp             HHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS-GGGGCSEEEEEETTEEEEEEC
T ss_pred             HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH-HHHhCCEEEEEECCEEEEECC
Confidence            888888888888899999999999999999999999999997 569999999999884 668999999999999999999


Q ss_pred             hhHHHH
Q psy13765        259 TDQLVN  264 (606)
Q Consensus       259 ~~~~~~  264 (606)
                      ++++.+
T Consensus       228 ~~~~~~  233 (275)
T 3gfo_A          228 PKEVFA  233 (275)
T ss_dssp             HHHHTH
T ss_pred             HHHHhc
Confidence            998754

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=1.2e-45  Score=376.49  Aligned_cols=218  Identities=23%  Similarity=0.390  Sum_probs=180.9

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-----
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-----  102 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~-----  102 (606)
                      .|+++||+++|        +++++|+|||+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|++..     
T Consensus        24 ~l~i~~l~~~y--------~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p-~~G~I~~~g~~i~~~~~~   94 (263)
T 2olj_A           24 MIDVHQLKKSF--------GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF-DEGEIIIDGINLKAKDTN   94 (263)
T ss_dssp             SEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEETTEESSSTTCC
T ss_pred             eEEEEeEEEEE--------CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC-CCcEEEECCEECCCcccc
Confidence            49999999997        345799999999999999999999999999999999999877 5999999998753     


Q ss_pred             hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhh
Q psy13765        103 INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQK  180 (606)
Q Consensus       103 ~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~  180 (606)
                      ...+++.+|||+|++.+++.+||.+.+...... .     .+++..+ ++|+.-+.+.+   ++- .+|.+...||||||
T Consensus        95 ~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~-~-----~~~~~~~~~~~~~~~l~~~---~L~~~~~~~~~~LSgGqk  165 (263)
T 2olj_A           95 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMK-V-----RKWPREKAEAKAMELLDKV---GLKDKAHAYPDSLSGGQA  165 (263)
T ss_dssp             HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHH-T-----SCCCHHHHHHHHHHHHHHT---TCGGGTTSCGGGSCHHHH
T ss_pred             HHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHH-H-----cCCCHHHHHHHHHHHHHHC---CCchHhcCChhhCCHHHH
Confidence            134567899999999999999997776541100 0     1123222 34443333333   332 57889999999999


Q ss_pred             hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765        181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD  260 (606)
Q Consensus       181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~  260 (606)
                      |||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++|||++ .+.++||++++|++|++++.|+++
T Consensus       166 QRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~  244 (263)
T 2olj_A          166 QRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDGGYIIEEGKPE  244 (263)
T ss_dssp             HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHH
T ss_pred             HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEECCHH
Confidence            9999999999999999999999999999999999999999878999999999976 567899999999999999999998


Q ss_pred             HHHH
Q psy13765        261 QLVN  264 (606)
Q Consensus       261 ~~~~  264 (606)
                      ++.+
T Consensus       245 ~~~~  248 (263)
T 2olj_A          245 DLFD  248 (263)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8754

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=1.2e-45  Score=376.68  Aligned_cols=218  Identities=22%  Similarity=0.347  Sum_probs=180.2

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----  103 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----  103 (606)
                      .|+++||+++|        +++++|+|||+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|++...    
T Consensus         6 ~l~i~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p-~~G~i~~~g~~~~~~~~~   76 (262)
T 1b0u_A            6 KLHVIDLHKRY--------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP-SEGAIIVNGQNINLVRDK   76 (262)
T ss_dssp             CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEETTEECCEEECT
T ss_pred             eEEEeeEEEEE--------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEEccccccc
Confidence            48999999997        345799999999999999999999999999999999999877 59999999987641    


Q ss_pred             ------------hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-c-c
Q psy13765        104 ------------NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-F-L  168 (606)
Q Consensus       104 ------------~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~-~  168 (606)
                                  ..+++.+|||+|++.+++.+||.+.+...... .     .+++..+ ++|+.   +++..-++- . +
T Consensus        77 ~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~-~-----~~~~~~~~~~~~~---~~l~~~~L~~~~~  147 (262)
T 1b0u_A           77 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ-V-----LGLSKHDARERAL---KYLAKVGIDERAQ  147 (262)
T ss_dssp             TSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHH-T-----TCCCHHHHHHHHH---HHHHHTTCCHHHH
T ss_pred             cccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHH-h-----cCCCHHHHHHHHH---HHHHHcCCCchhh
Confidence                        23467899999999999999997766541100 0     0123222 33443   333332332 4 6


Q ss_pred             CCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeee
Q psy13765        169 DEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL  248 (606)
Q Consensus       169 de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L  248 (606)
                      |.+...|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||++ .+.++||++++|
T Consensus       148 ~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l  226 (262)
T 1b0u_A          148 GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFL  226 (262)
T ss_dssp             TSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEE
T ss_pred             cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            8889999999999999999999999999999999999999999999999999878999999999976 567899999999


Q ss_pred             cCCcEEEEcChhHHHH
Q psy13765        249 SGGQCLYQGATDQLVN  264 (606)
Q Consensus       249 ~~G~~~~~G~~~~~~~  264 (606)
                      ++|+++..|+++++.+
T Consensus       227 ~~G~i~~~g~~~~~~~  242 (262)
T 1b0u_A          227 HQGKIEEEGDPEQVFG  242 (262)
T ss_dssp             ETTEEEEEECHHHHHH
T ss_pred             ECCEEEEeCCHHHHHh
Confidence            9999999999988754

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=1.1e-45  Score=390.79  Aligned_cols=218  Identities=22%  Similarity=0.383  Sum_probs=181.6

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC----C-
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR----N-  102 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~----~-  102 (606)
                      .|+++||+++|        +++.+|+|||+++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++.    . 
T Consensus         4 ~l~i~~ls~~y--------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p-~~G~I~i~G~~i~~~~~~   74 (359)
T 3fvq_A            4 ALHIGHLSKSF--------QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP-DSGEISLSGKTIFSKNTN   74 (359)
T ss_dssp             CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC-SEEEEEETTEEEESSSCB
T ss_pred             EEEEEeEEEEE--------CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC-CCcEEEECCEECcccccc
Confidence            48999999997        446799999999999999999999999999999999999887 599999999865    1 


Q ss_pred             hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCCh-HHHHHHHHHHHHhcCCcccccCCCCCCCCchhhh
Q psy13765        103 INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSG-GQKKRLSIALELINNPRVMFLDEPTTSNPNDQKK  181 (606)
Q Consensus       103 ~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSg-GqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~k  181 (606)
                      ....++.+|||+|++.++|.+||.+.+.. ++..      ...+. ..++|+.-+.+++.-.+  ++|.++..|||||||
T Consensus        75 ~~~~~r~ig~vfQ~~~l~p~ltV~eni~~-~l~~------~~~~~~~~~~~v~~~l~~~gL~~--~~~r~~~~LSGGq~Q  145 (359)
T 3fvq_A           75 LPVRERRLGYLVQEGVLFPHLTVYRNIAY-GLGN------GKGRTAQERQRIEAMLELTGISE--LAGRYPHELSGGQQQ  145 (359)
T ss_dssp             CCGGGSCCEEECTTCCCCTTSCHHHHHHT-TSTT------SSCCSHHHHHHHHHHHHHHTCGG--GTTSCGGGSCHHHHH
T ss_pred             cchhhCCEEEEeCCCcCCCCCCHHHHHHH-HHHH------cCCChHHHHHHHHHHHHHcCCch--HhcCChhhCCHHHHH
Confidence            22346789999999999999999776643 3321      11222 23456655555554322  578888889999999


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD  260 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~  260 (606)
                      ||+|||||+.+|++|||||||||||+..+.++.+.|+++.+ .|+|+|++|||.+ ++..+||||++|++|+++..|+++
T Consensus       146 RValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~  224 (359)
T 3fvq_A          146 RAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQGRILQTASPH  224 (359)
T ss_dssp             HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEETTEEEEEECHH
T ss_pred             HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEECCEEEEEeCHH
Confidence            99999999999999999999999999999999998888754 6999999999976 577999999999999999999999


Q ss_pred             HHHH
Q psy13765        261 QLVN  264 (606)
Q Consensus       261 ~~~~  264 (606)
                      ++.+
T Consensus       225 el~~  228 (359)
T 3fvq_A          225 ELYR  228 (359)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9864

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=2.5e-45  Score=390.67  Aligned_cols=218  Identities=23%  Similarity=0.384  Sum_probs=178.3

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAF  106 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~  106 (606)
                      .|+++||+++|        +++.+|+|||+++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++... ...
T Consensus         3 ~l~~~~l~~~y--------g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p-~~G~I~i~G~~~~~~~~~   73 (381)
T 3rlf_A            3 SVQLQNVTKAW--------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI-TSGDLFIGEKRMNDTPPA   73 (381)
T ss_dssp             CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEETTEECTTCCGG
T ss_pred             EEEEEeEEEEE--------CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCC-CCeEEEECCEECCCCCHH
Confidence            48999999997        346799999999999999999999999999999999999887 59999999987642 233


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI  185 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I  185 (606)
                      ++.+|||+|++.++|.+||.+.+.. ++.      ....+..+ ++|+.-+.+++.-.+  ++|.++..|||||||||+|
T Consensus        74 ~r~ig~VfQ~~~l~p~ltV~eni~~-~~~------~~~~~~~~~~~~v~~~l~~~~L~~--~~~r~p~~LSGGqrQRVai  144 (381)
T 3rlf_A           74 ERGVGMVFQSYALYPHLSVAENMSF-GLK------LAGAKKEVINQRVNQVAEVLQLAH--LLDRKPKALSGGQRQRVAI  144 (381)
T ss_dssp             GSCEEEECTTCCCCTTSCHHHHHTH-HHH------HTTCCHHHHHHHHHHHHHHTTCGG--GTTCCGGGSCHHHHHHHHH
T ss_pred             HCCEEEEecCCcCCCCCCHHHHHHH-HHH------HcCCCHHHHHHHHHHHHHHcCCch--hhcCChhHCCHHHHHHHHH
Confidence            5779999999999999999665432 111      01123332 345554444443322  4677777777777777788


Q ss_pred             HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      ||||+.+|++|||||||||||+..+.++.+.|++++++ |+|+|++|||++ ++..+||||++|++|+++..|+++++.+
T Consensus       145 ArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~~l~~  223 (381)
T 3rlf_A          145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELYH  223 (381)
T ss_dssp             HHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence            88888889999999999999999999999999999765 999999999976 5789999999999999999999999864

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=1.8e-45  Score=369.60  Aligned_cols=221  Identities=26%  Similarity=0.421  Sum_probs=176.0

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INA  105 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~  105 (606)
                      |+++||+++|+.+    ...+.+|+|||+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|++..   ..+
T Consensus         2 l~~~~l~~~y~~~----~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p-~~G~I~~~g~~~~~~~~~~   76 (235)
T 3tif_A            2 VKLKNVTKTYKMG----EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP-TEGEVYIDNIKTNDLDDDE   76 (235)
T ss_dssp             EEEEEEEEEEEET----TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEECTTCCHHH
T ss_pred             EEEEEEEEEeCCC----CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CceEEEECCEEcccCCHHH
Confidence            7899999998532    1235699999999999999999999999999999999999887 5999999998653   222


Q ss_pred             ---h-cccEEEEccCCCCCCCCcHHHHHHHc-CCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchh
Q psy13765        106 ---F-RRVSCYIQQDDRLQPLLTIENVMSLL-GLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQ  179 (606)
Q Consensus       106 ---~-~~~~~yv~Q~~~l~~~ltv~~~l~~~-gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~  179 (606)
                         . ++.+|||+|++.+++.+||.+.+..- ...     ..+..+..+ ++++.-+.+.+.-.+ ...|.++..|||||
T Consensus        77 ~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq  150 (235)
T 3tif_A           77 LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFK-----YRGAMSGEERRKRALECLKMAELEE-RFANHKPNQLSGGQ  150 (235)
T ss_dssp             HHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTC-----SSSCCCHHHHHHHHHHHHHHTTCCG-GGTTCCGGGSCHHH
T ss_pred             HHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhh-----hccCCCHHHHHHHHHHHHHHCCCCh-hhhhCChhhCCHHH
Confidence               2 34699999999999999997765431 111     011233333 334433333332211 24588999999999


Q ss_pred             hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      ||||+|||||+.+|++|||||||+|||+.++.++++.|++++++ |+|||++|||++  +.++||++++|++|+++..++
T Consensus       151 ~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~  228 (235)
T 3tif_A          151 QQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEK  228 (235)
T ss_dssp             HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEcC
Confidence            99999999999999999999999999999999999999999875 999999999986  348999999999999999998


Q ss_pred             hhHH
Q psy13765        259 TDQL  262 (606)
Q Consensus       259 ~~~~  262 (606)
                      ++++
T Consensus       229 ~~~~  232 (235)
T 3tif_A          229 LRGF  232 (235)
T ss_dssp             CC--
T ss_pred             hhhh
Confidence            8764

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=3.1e-45  Score=374.38  Aligned_cols=217  Identities=24%  Similarity=0.414  Sum_probs=177.4

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---h
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---I  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~  103 (606)
                      ..|+++||+++|        +++++|+|||+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++..   .
T Consensus        10 ~~l~~~~l~~~~--------~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~I~~~g~~~~~~~~   80 (266)
T 4g1u_C           10 ALLEASHLHYHV--------QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP-SHGECHLLGQNLNSWQP   80 (266)
T ss_dssp             CEEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC-SSCEEEETTEETTTSCH
T ss_pred             ceEEEEeEEEEe--------CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEECCEECCcCCH
Confidence            469999999987        346799999999999999999999999999999999999877 5999999998753   3


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL  183 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl  183 (606)
                      ...++.++|++|++.+++.+||.+.+... .... .      ..-.++++.-+.+.+.-.+  ..|.+...|||||||||
T Consensus        81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~-~~~~-~------~~~~~~~~~~~l~~~~l~~--~~~~~~~~LSgGq~QRv  150 (266)
T 4g1u_C           81 KALARTRAVMRQYSELAFPFSVSEVIQMG-RAPY-G------GSQDRQALQQVMAQTDCLA--LAQRDYRVLSGGEQQRV  150 (266)
T ss_dssp             HHHHHHEEEECSCCCCCSCCBHHHHHHGG-GTTS-C------STTHHHHHHHHHHHTTCST--TTTSBGGGCCHHHHHHH
T ss_pred             HHHhheEEEEecCCccCCCCCHHHHHHhh-hhhc-C------cHHHHHHHHHHHHHcCChh--HhcCCcccCCHHHHHHH
Confidence            45667899999999998889997766542 1110 0      1112344443333332211  46777778888888888


Q ss_pred             HHHHhhhc------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEE
Q psy13765        184 SIALELIN------NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ  256 (606)
Q Consensus       184 ~IA~aL~~------~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~  256 (606)
                      +|||||+.      +|++|+|||||+|||+.++.++++.|++++++ |+|||++|||++ .+.++|||+++|++|++++.
T Consensus       151 ~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~G~i~~~  229 (266)
T 4g1u_C          151 QLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQGKLVAC  229 (266)
T ss_dssp             HHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEETTEEEEE
T ss_pred             HHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEE
Confidence            88888888      89999999999999999999999999999875 579999999976 57789999999999999999


Q ss_pred             cChhHHH
Q psy13765        257 GATDQLV  263 (606)
Q Consensus       257 G~~~~~~  263 (606)
                      |+++++.
T Consensus       230 g~~~~~~  236 (266)
T 4g1u_C          230 GTPEEVL  236 (266)
T ss_dssp             ECHHHHC
T ss_pred             cCHHHHh
Confidence            9998864

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=3.7e-45  Score=371.67  Aligned_cols=219  Identities=23%  Similarity=0.365  Sum_probs=180.4

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--hh
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--IN  104 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--~~  104 (606)
                      ..|+++||+++|        +++.+|+|||+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|++..  ..
T Consensus        14 ~~l~i~~l~~~y--------~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p-~~G~I~~~g~~~~~~~~   84 (256)
T 1vpl_A           14 GAVVVKDLRKRI--------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP-SSGIVTVFGKNVVEEPH   84 (256)
T ss_dssp             CCEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEETTEETTTCHH
T ss_pred             CeEEEEEEEEEE--------CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEECCccHH
Confidence            458999999997        346799999999999999999999999999999999999877 5999999998753  23


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL  183 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl  183 (606)
                      ..++.+|||+|++.+++.+||.+.+....  ..     .+.+..+ ++++.-+.+.+.-.+  .+|.+...|||||||||
T Consensus        85 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~--~~-----~~~~~~~~~~~~~~~l~~~gL~~--~~~~~~~~LSgGq~qRv  155 (256)
T 1vpl_A           85 EVRKLISYLPEEAGAYRNMQGIEYLRFVA--GF-----YASSSSEIEEMVERATEIAGLGE--KIKDRVSTYSKGMVRKL  155 (256)
T ss_dssp             HHHTTEEEECTTCCCCTTSBHHHHHHHHH--HH-----HCCCHHHHHHHHHHHHHHHCCGG--GGGSBGGGCCHHHHHHH
T ss_pred             HHhhcEEEEcCCCCCCCCCcHHHHHHHHH--HH-----cCCChHHHHHHHHHHHHHCCCch--HhcCChhhCCHHHHHHH
Confidence            45678999999999999999977765421  00     0122222 334433333332211  46788888999999999


Q ss_pred             HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765        184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                      .||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+..+||++++|++|++++.|+++++.
T Consensus       156 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~  234 (256)
T 1vpl_A          156 LIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEELK  234 (256)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHHHHH
T ss_pred             HHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEECCEEEEecCHHHHH
Confidence            9999999999999999999999999999999999999878999999999976 466789999999999999999998876


Q ss_pred             H
Q psy13765        264 N  264 (606)
Q Consensus       264 ~  264 (606)
                      +
T Consensus       235 ~  235 (256)
T 1vpl_A          235 E  235 (256)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=4.9e-45  Score=363.86  Aligned_cols=210  Identities=21%  Similarity=0.328  Sum_probs=171.6

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---h
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---N  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~  104 (606)
                      .|+++||+++|        +++++|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|++...   .
T Consensus         4 ~l~~~~l~~~y--------~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~   74 (224)
T 2pcj_A            4 ILRAENIKKVI--------RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP-TEGKVFLEGKEVDYTNEK   74 (224)
T ss_dssp             EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCC-SEEEEEETTEECCSSCHH
T ss_pred             EEEEEeEEEEE--------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEECCCCCHH
Confidence            48999999987        336799999999999999999999999999999999999877 59999999987532   1


Q ss_pred             ---hhc-ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCccc-ccCCCCCCCCch
Q psy13765        105 ---AFR-RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM-FLDEPTTSNPND  178 (606)
Q Consensus       105 ---~~~-~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~-~~de~~~~~s~g  178 (606)
                         .++ +.++||+|++.+++.+||.+.+... ...      .+++.. .++++.-+.+.+   .+- .+|.+...||||
T Consensus        75 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~-~~~------~~~~~~~~~~~~~~~l~~~---~l~~~~~~~~~~LSgG  144 (224)
T 2pcj_A           75 ELSLLRNRKLGFVFQFHYLIPELTALENVIVP-MLK------MGKPKKEAKERGEYLLSEL---GLGDKLSRKPYELSGG  144 (224)
T ss_dssp             HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHH-HHH------TTCCHHHHHHHHHHHHHHT---TCTTCTTCCGGGSCHH
T ss_pred             HHHHHHhCcEEEEecCcccCCCCCHHHHHHhH-HHH------cCCCHHHHHHHHHHHHHHc---CCchhhhCChhhCCHH
Confidence               233 6799999999999999997766531 110      012211 233443333332   222 468888899999


Q ss_pred             hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      |||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++|||++ .+ ++||++++|++|++++.|+
T Consensus       145 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l~~G~i~~~g~  222 (224)
T 2pcj_A          145 EQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LA-ELTHRTLEMKDGKVVGEIT  222 (224)
T ss_dssp             HHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HH-TTSSEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEEee
Confidence            999999999999999999999999999999999999999999877999999999975 35 8999999999999999886

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=7e-45  Score=366.43  Aligned_cols=217  Identities=22%  Similarity=0.392  Sum_probs=178.1

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---h
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---N  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~  104 (606)
                      .|+++||+++|        +++++|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|++...   .
T Consensus         6 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~   76 (240)
T 1ji0_A            6 VLEVQSLHVYY--------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA-QKGKIIFNGQDITNKPAH   76 (240)
T ss_dssp             EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEECTTCCHH
T ss_pred             eEEEEeEEEEE--------CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCCCCHH
Confidence            59999999997        335799999999999999999999999999999999999877 59999999987532   2


Q ss_pred             h-hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc-cccCCCCCCCCchhhhH
Q psy13765        105 A-FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-MFLDEPTTSNPNDQKKR  182 (606)
Q Consensus       105 ~-~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~kr  182 (606)
                      . .++.+|||+|++.+++.+|+.+.+.......     ..  ....++++.-..+.+.  .+ -..|++...||||||||
T Consensus        77 ~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~--~~~~~~~~~~~l~~~~--~l~~~~~~~~~~LSgGq~qr  147 (240)
T 1ji0_A           77 VINRMGIALVPEGRRIFPELTVYENLMMGAYNR-----KD--KEGIKRDLEWIFSLFP--RLKERLKQLGGTLSGGEQQM  147 (240)
T ss_dssp             HHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC-----CC--SSHHHHHHHHHHHHCH--HHHTTTTSBSSSSCHHHHHH
T ss_pred             HHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC-----CC--HHHHHHHHHHHHHHcc--cHhhHhcCChhhCCHHHHHH
Confidence            2 2456999999999999999988776521111     00  1112333332222221  12 14688999999999999


Q ss_pred             HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765        183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL  262 (606)
Q Consensus       183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~  262 (606)
                      |+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.++||++++|++|++++.|+++++
T Consensus       148 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~  226 (240)
T 1ji0_A          148 LAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGKASEL  226 (240)
T ss_dssp             HHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred             HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            99999999999999999999999999999999999999878999999999976 46789999999999999999998876


Q ss_pred             H
Q psy13765        263 V  263 (606)
Q Consensus       263 ~  263 (606)
                      .
T Consensus       227 ~  227 (240)
T 1ji0_A          227 L  227 (240)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=2.2e-44  Score=381.71  Aligned_cols=218  Identities=22%  Similarity=0.340  Sum_probs=179.8

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAF  106 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~  106 (606)
                      .|+++||+++|        +++.+|+|+|+++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++... ...
T Consensus         3 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-~~G~I~i~g~~i~~~~~~   73 (359)
T 2yyz_A            3 SIRVVNLKKYF--------GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP-TSGEIYFDDVLVNDIPPK   73 (359)
T ss_dssp             CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC-SEEEEEETTEECTTSCGG
T ss_pred             EEEEEEEEEEE--------CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC-CccEEEECCEECCCCChh
Confidence            38999999997        346799999999999999999999999999999999999877 59999999987532 233


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI  185 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I  185 (606)
                      ++.+|||+|+..++|.+||.+.+.. ++..      .+.+..+ ++|+.-+.+.+.-.+  ++|.+...|||||||||+|
T Consensus        74 ~r~ig~v~Q~~~l~~~ltv~eni~~-~~~~------~~~~~~~~~~~v~~~l~~~~L~~--~~~r~~~~LSgGq~QRval  144 (359)
T 2yyz_A           74 YREVGMVFQNYALYPHMTVFENIAF-PLRA------RRISKDEVEKRVVEIARKLLIDN--LLDRKPTQLSGGQQQRVAL  144 (359)
T ss_dssp             GTTEEEECSSCCCCTTSCHHHHHHG-GGSS------SCSHHHHTTHHHHHHHHHTTCGG--GTTSCGGGSCHHHHHHHHH
T ss_pred             hCcEEEEecCcccCCCCCHHHHHHH-HHHh------cCCCHHHHHHHHHHHHHHcCCch--HhcCChhhCCHHHHHHHHH
Confidence            5789999999999999999777654 2211      1122222 345544444443222  4678888888888888899


Q ss_pred             HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      ||||+.+|++|+|||||+|||+.++.++.+.|++++++ |.|+|++|||++ ++..+|||+++|++|+++..|+++++.+
T Consensus       145 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~l~~  223 (359)
T 2yyz_A          145 ARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQGKLVQYGTPDEVYD  223 (359)
T ss_dssp             HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            99999999999999999999999999999999999765 999999999976 5778999999999999999999998864

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=1.4e-44  Score=367.89  Aligned_cols=221  Identities=16%  Similarity=0.278  Sum_probs=179.7

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----  103 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----  103 (606)
                      .|+++||+++|        +++++|+|||+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|++...    
T Consensus         7 ~l~i~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p-~~G~i~~~g~~~~~~~~~   77 (257)
T 1g6h_A            7 ILRTENIVKYF--------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA-DEGRVYFENKDITNKEPA   77 (257)
T ss_dssp             EEEEEEEEEEE--------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEECTTCCHH
T ss_pred             EEEEeeeEEEE--------CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCCCCHH
Confidence            59999999997        345799999999999999999999999999999999999877 59999999987532    


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCc------cccCC-hHHHHHHHHHHHHhcCCccc-ccCCCCCCC
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTR------SSQLS-GGQKKRLSIALELINNPRVM-FLDEPTTSN  175 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~------~~~lS-gGqrqRv~ia~~L~~~~~~~-~~de~~~~~  175 (606)
                      ...++.++||+|++.+++.+||.+.+.........+..      ....+ .-.++++.-+.+.+   .+- ..|++...|
T Consensus        78 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~l~~~~~~~~~~L  154 (257)
T 1g6h_A           78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL---KLSHLYDRKAGEL  154 (257)
T ss_dssp             HHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHT---TCGGGTTSBGGGS
T ss_pred             HHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHc---CCchhhCCCchhC
Confidence            23456799999999999999998877542111000000      00012 12244444333333   332 578899999


Q ss_pred             CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765        176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY  255 (606)
Q Consensus       176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~  255 (606)
                      ||||||||+||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++|||++. +.++||++++|++|++++
T Consensus       155 SgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~~d~v~~l~~G~i~~  233 (257)
T 1g6h_A          155 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIA  233 (257)
T ss_dssp             CHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCST-TGGGCSEEEEEETTEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999999998889999999999874 668999999999999999


Q ss_pred             EcChhH
Q psy13765        256 QGATDQ  261 (606)
Q Consensus       256 ~G~~~~  261 (606)
                      .|++++
T Consensus       234 ~g~~~~  239 (257)
T 1g6h_A          234 EGRGEE  239 (257)
T ss_dssp             EEESHH
T ss_pred             EeCHHH
Confidence            999988

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=2.9e-44  Score=380.12  Aligned_cols=221  Identities=19%  Similarity=0.367  Sum_probs=181.7

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-h
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-N  104 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~  104 (606)
                      ...|+++||+++|+       +++++|+|+|+++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++... .
T Consensus        12 ~~~l~~~~l~~~y~-------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-~~G~I~i~g~~i~~~~   83 (355)
T 1z47_A           12 SMTIEFVGVEKIYP-------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP-TKGDVWIGGKRVTDLP   83 (355)
T ss_dssp             CEEEEEEEEEECCT-------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC-SEEEEEETTEECTTCC
T ss_pred             CceEEEEEEEEEEc-------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC-CccEEEECCEECCcCC
Confidence            45799999999862       345799999999999999999999999999999999999877 59999999987632 3


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL  183 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl  183 (606)
                      ..++.+|||+|+..++|.+||.+.+.. ++..      .+++..+ ++|+.-+.+.+.-.+  ++|.+...|||||||||
T Consensus        84 ~~~r~ig~v~Q~~~l~~~ltv~eni~~-~l~~------~~~~~~~~~~~v~~~l~~~gL~~--~~~r~~~~LSGGq~QRv  154 (355)
T 1z47_A           84 PQKRNVGLVFQNYALFQHMTVYDNVSF-GLRE------KRVPKDEMDARVRELLRFMRLES--YANRFPHELSGGQQQRV  154 (355)
T ss_dssp             GGGSSEEEECGGGCCCTTSCHHHHHHH-HHHH------TTCCHHHHHHHHHHHHHHTTCGG--GTTSCGGGSCHHHHHHH
T ss_pred             hhhCcEEEEecCcccCCCCCHHHHHHH-HHHH------cCCCHHHHHHHHHHHHHHcCChh--HhcCCcccCCHHHHHHH
Confidence            346789999999999999999766543 2110      1123333 445554444443222  46788888888888888


Q ss_pred             HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765        184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL  262 (606)
Q Consensus       184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~  262 (606)
                      +|||||+.+|++|+|||||+|||+.++.++.+.|++++++ |+|+|++|||++ ++..+|||+++|++|+++..|+++++
T Consensus       155 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l  233 (355)
T 1z47_A          155 ALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHEGNVEQFGTPEEV  233 (355)
T ss_dssp             HHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            8999999999999999999999999999999999999765 999999999976 57789999999999999999999988


Q ss_pred             HH
Q psy13765        263 VN  264 (606)
Q Consensus       263 ~~  264 (606)
                      .+
T Consensus       234 ~~  235 (355)
T 1z47_A          234 YE  235 (355)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=2.5e-44  Score=381.72  Aligned_cols=218  Identities=23%  Similarity=0.377  Sum_probs=180.4

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAF  106 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~  106 (606)
                      .|+++||+++|        +++++|+|+|+++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++... ...
T Consensus         3 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-~~G~I~i~g~~i~~~~~~   73 (362)
T 2it1_A            3 EIKLENIVKKF--------GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP-TSGKIYFDEKDVTELPPK   73 (362)
T ss_dssp             CEEEEEEEEES--------SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEETTEECTTSCGG
T ss_pred             EEEEEeEEEEE--------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC-CceEEEECCEECCcCCHh
Confidence            38999999986        346799999999999999999999999999999999999887 59999999987532 233


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI  185 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I  185 (606)
                      ++.+|||+|+..++|.+||.+.+.. ++.      ..+.+..+ ++|+.-+.+++.-.+  ++|.+...|||||||||+|
T Consensus        74 ~r~ig~v~Q~~~l~~~ltv~eni~~-~~~------~~~~~~~~~~~~v~~~l~~~~L~~--~~~r~~~~LSGGq~QRval  144 (362)
T 2it1_A           74 DRNVGLVFQNWALYPHMTVYKNIAF-PLE------LRKAPREEIDKKVREVAKMLHIDK--LLNRYPWQLSGGQQQRVAI  144 (362)
T ss_dssp             GTTEEEECTTCCCCTTSCHHHHHHH-HHH------HTTCCHHHHHHHHHHHHHHTTCTT--CTTCCGGGSCHHHHHHHHH
T ss_pred             HCcEEEEecCcccCCCCCHHHHHHH-HHH------hcCCCHHHHHHHHHHHHHHcCCch--HhhCChhhCCHHHHHHHHH
Confidence            5789999999999999999766543 111      01123333 455554444443322  4678888889999999999


Q ss_pred             HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      ||||+.+|++|+|||||||||+.++.++.+.|++++++ |+|+|++|||++ ++..+|||+++|++|+++..|+++++.+
T Consensus       145 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~~~~  223 (362)
T 2it1_A          145 ARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIREGEILQVGTPDEVYY  223 (362)
T ss_dssp             HHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999999999999999999999999999999765 999999999976 5778999999999999999999998854

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=3.7e-44  Score=382.18  Aligned_cols=218  Identities=20%  Similarity=0.348  Sum_probs=179.9

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----  103 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----  103 (606)
                      .|+++||+++|        +++.+|+|+|+++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++...    
T Consensus         3 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-~~G~I~i~g~~~~~~~~~   73 (372)
T 1g29_1            3 GVRLVDVWKVF--------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP-SRGQIYIGDKLVADPEKG   73 (372)
T ss_dssp             EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC-SEEEEEETTEEEEEGGGT
T ss_pred             EEEEEeEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCC-CccEEEECCEECcccccc
Confidence            48999999997        346799999999999999999999999999999999999887 59999999976421    


Q ss_pred             ---hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchh
Q psy13765        104 ---NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQ  179 (606)
Q Consensus       104 ---~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~  179 (606)
                         ...++.+|||+|+..++|.+||.+.+.. ++.      ..+++..+ ++|+.-+.+.+.-.+  ++|.+...|||||
T Consensus        74 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~-~~~------~~~~~~~~~~~~v~~~l~~~~L~~--~~~r~~~~LSGGq  144 (372)
T 1g29_1           74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAF-PLK------LRKVPRQEIDQRVREVAELLGLTE--LLNRKPRELSGGQ  144 (372)
T ss_dssp             EECCGGGSSEEEECSCCCCCTTSCHHHHHHH-HHH------HTTCCHHHHHHHHHHHHHHHTCGG--GTTCCGGGSCHHH
T ss_pred             ccCCHhHCCEEEEeCCCccCCCCCHHHHHHH-HHH------HcCCCHHHHHHHHHHHHHHCCCch--HhcCCcccCCHHH
Confidence               2235779999999999999999776643 111      01123333 355554444443322  4678888888888


Q ss_pred             hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      ||||+|||||+.+|++|+|||||+|||+.++.++.+.|++++++ |.|+|++|||+. ++..+||++++|++|+++..|+
T Consensus       145 ~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~  223 (372)
T 1g29_1          145 RQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGS  223 (372)
T ss_dssp             HHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEEC
T ss_pred             HHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeCCEEEEeCC
Confidence            88888999999999999999999999999999999999999765 999999999976 5778999999999999999999


Q ss_pred             hhHHHH
Q psy13765        259 TDQLVN  264 (606)
Q Consensus       259 ~~~~~~  264 (606)
                      ++++.+
T Consensus       224 ~~~l~~  229 (372)
T 1g29_1          224 PDEVYD  229 (372)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998864

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=2e-44  Score=381.92  Aligned_cols=218  Identities=23%  Similarity=0.400  Sum_probs=181.8

Q ss_pred             EEEEEeeEEEEecCCcccccccc--cceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKD--VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---  102 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---  102 (606)
                      .|+++||+++|        ++++  +|+|+|+++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++..   
T Consensus         3 ~l~i~~l~~~y--------~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-~~G~I~i~g~~i~~~~   73 (353)
T 1oxx_K            3 RIIVKNVSKVF--------KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP-STGELYFDDRLVASNG   73 (353)
T ss_dssp             CEEEEEEEEEE--------GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC-SEEEEEETTEEEEETT
T ss_pred             EEEEEeEEEEE--------CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEECCEECcccc
Confidence            38999999997        3356  99999999999999999999999999999999999877 5999999998642   


Q ss_pred             ---hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCch
Q psy13765        103 ---INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPND  178 (606)
Q Consensus       103 ---~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g  178 (606)
                         ....++.+|||+|+..+++.+||.+.+.. ++..      .+++..+ ++|+.-+.+.+.-.+  ++|.+...||||
T Consensus        74 ~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~-~~~~------~~~~~~~~~~~v~~~l~~~~L~~--~~~~~~~~LSGG  144 (353)
T 1oxx_K           74 KLIVPPEDRKIGMVFQTWALYPNLTAFENIAF-PLTN------MKMSKEEIRKRVEEVAKILDIHH--VLNHFPRELSGA  144 (353)
T ss_dssp             EESSCGGGSCEEEEETTSCCCTTSCHHHHHHG-GGTT------SSCCHHHHHHHHHHHHHHTTCGG--GTTSCGGGSCHH
T ss_pred             cccCChhhCCEEEEeCCCccCCCCCHHHHHHH-HHHH------cCCCHHHHHHHHHHHHHHcCCch--HhcCChhhCCHH
Confidence               23346789999999999999999777654 2211      1233333 445554444443222  568888899999


Q ss_pred             hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      |||||+|||||+.+|++|+|||||+|||+.++.++.+.|++++++ |+|+|++|||++ ++..+|||+++|++|+++..|
T Consensus       145 q~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g  223 (353)
T 1oxx_K          145 QQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVG  223 (353)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEc
Confidence            999999999999999999999999999999999999999999765 999999999976 577899999999999999999


Q ss_pred             ChhHHHH
Q psy13765        258 ATDQLVN  264 (606)
Q Consensus       258 ~~~~~~~  264 (606)
                      +++++.+
T Consensus       224 ~~~~l~~  230 (353)
T 1oxx_K          224 KPEDLYD  230 (353)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHh
Confidence            9998854

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=4.4e-44  Score=381.15  Aligned_cols=218  Identities=22%  Similarity=0.352  Sum_probs=178.0

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAF  106 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~  106 (606)
                      .|+++||+++|        +++.+|+|+|+++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++... ...
T Consensus        11 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-~~G~I~i~g~~i~~~~~~   81 (372)
T 1v43_A           11 EVKLENLTKRF--------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP-TEGRIYFGDRDVTYLPPK   81 (372)
T ss_dssp             CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEETTEECTTSCGG
T ss_pred             eEEEEEEEEEE--------CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC-CceEEEECCEECCCCChh
Confidence            39999999997        346799999999999999999999999999999999999887 59999999987532 233


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI  185 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I  185 (606)
                      ++.+|||+|+..++|.+||.+.+.. ++..      .+.+..+ ++|+.-+.+.+.-.+  ++|.+...|||||||||+|
T Consensus        82 ~r~ig~v~Q~~~l~~~ltv~eni~~-~~~~------~~~~~~~~~~~v~~~l~~~~L~~--~~~r~~~~LSGGq~QRval  152 (372)
T 1v43_A           82 DRNISMVFQSYAVWPHMTVYENIAF-PLKI------KKFPKDEIDKRVRWAAELLQIEE--LLNRYPAQLSGGQRQRVAV  152 (372)
T ss_dssp             GGTEEEEEC------CCCHHHHHHT-TCC--------CCCHHHHHHHHHHHHHHTTCGG--GTTSCTTTCCSSCHHHHHH
T ss_pred             hCcEEEEecCcccCCCCCHHHHHHH-HHHh------cCCCHHHHHHHHHHHHHHcCChh--HhcCChhhCCHHHHHHHHH
Confidence            5789999999999999999877754 3321      1233333 455654555443222  5788999999999999999


Q ss_pred             HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      ||||+.+|++|+|||||||||+..+.++.+.|++++++ |.|+|++|||+. ++..+|||+++|++|+++..|+++++.+
T Consensus       153 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~~  231 (372)
T 1v43_A          153 ARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEVYL  231 (372)
T ss_dssp             HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            99999999999999999999999999999999999765 999999999976 5778999999999999999999998864

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=100.00  E-value=8.1e-44  Score=364.00  Aligned_cols=222  Identities=20%  Similarity=0.343  Sum_probs=179.5

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhc
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR  107 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~  107 (606)
                      .|+++||+++|..+   ....+++|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++.....++
T Consensus         2 ~l~~~~l~~~y~~~---~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p-~~G~I~~~g~~~~~~~~~   77 (266)
T 2yz2_A            2 RIEVVNVSHIFHRG---TPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP-TSGDVLYDGERKKGYEIR   77 (266)
T ss_dssp             CEEEEEEEEEESTT---STTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEECCHHHHG
T ss_pred             EEEEEEEEEEecCC---CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCcEEEECCEECchHHhh
Confidence            48899999998310   00015799999999999999999999999999999999999876 599999999876533567


Q ss_pred             ccEEEEccCC-CCCCCCcHHHHHHHcCCccccCCccccCCh-HHHHHHHHHHHHhcCC--cccccCCCCCCCCchhhhHH
Q psy13765        108 RVSCYIQQDD-RLQPLLTIENVMSLLGLDESQNTRSSQLSG-GQKKRLSIALELINNP--RVMFLDEPTTSNPNDQKKRL  183 (606)
Q Consensus       108 ~~~~yv~Q~~-~l~~~ltv~~~l~~~gl~~~~~~~~~~lSg-GqrqRv~ia~~L~~~~--~~~~~de~~~~~s~g~~krl  183 (606)
                      +.+|||+|++ ..++.+|+.+.+... ....       ++. ..++|+.-+.+.+.-.  +  .+|.+...|||||||||
T Consensus        78 ~~i~~v~q~~~~~~~~~tv~enl~~~-~~~~-------~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~~~LSgGq~qRv  147 (266)
T 2yz2_A           78 RNIGIAFQYPEDQFFAERVFDEVAFA-VKNF-------YPDRDPVPLVKKAMEFVGLDFDS--FKDRVPFFLSGGEKRRV  147 (266)
T ss_dssp             GGEEEECSSGGGGCCCSSHHHHHHHT-TTTT-------CTTSCSHHHHHHHHHHTTCCHHH--HTTCCGGGSCHHHHHHH
T ss_pred             hhEEEEeccchhhcCCCcHHHHHHHH-HHhc-------CCHHHHHHHHHHHHHHcCcCCcc--cccCChhhCCHHHHHHH
Confidence            7899999995 456678998777642 2110       111 1134554444444322  2  35788899999999999


Q ss_pred             HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765        184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                      +||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++. +..+||++++|++|++++.|+++++.
T Consensus       148 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~-~~~~~d~v~~l~~G~i~~~g~~~~~~  226 (266)
T 2yz2_A          148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIET-VINHVDRVVVLEKGKKVFDGTRMEFL  226 (266)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTT-TGGGCSEEEEEETTEEEEEEEHHHHH
T ss_pred             HHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            99999999999999999999999999999999999998779999999999874 66789999999999999999998876


Q ss_pred             H
Q psy13765        264 N  264 (606)
Q Consensus       264 ~  264 (606)
                      +
T Consensus       227 ~  227 (266)
T 2yz2_A          227 E  227 (266)
T ss_dssp             H
T ss_pred             c
Confidence            5

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=5.3e-44  Score=377.62  Aligned_cols=213  Identities=21%  Similarity=0.425  Sum_probs=175.2

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhhc
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAFR  107 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~~  107 (606)
                      |+++||+++|        +++ +|+|+|+++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++... ...+
T Consensus         2 l~~~~l~~~y--------~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-~~G~I~~~g~~i~~~~~~~   71 (348)
T 3d31_A            2 IEIESLSRKW--------KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP-DSGRILLDGKDVTDLSPEK   71 (348)
T ss_dssp             EEEEEEEEEC--------SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC-SEEEEEETTEECTTSCHHH
T ss_pred             EEEEEEEEEE--------CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC-CCcEEEECCEECCCCchhh
Confidence            7899999986        335 99999999999999999999999999999999999877 59999999987642 3346


Q ss_pred             ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHH
Q psy13765        108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL  187 (606)
Q Consensus       108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~  187 (606)
                      +.+|||+|+..++|.+||.+.+.. ++... +     .+..  +|+.-+.+.+.-.+  ++|.+...|||||||||+|||
T Consensus        72 r~ig~v~Q~~~l~~~ltv~enl~~-~~~~~-~-----~~~~--~~v~~~l~~~~L~~--~~~~~~~~LSgGq~QRvalAr  140 (348)
T 3d31_A           72 HDIAFVYQNYSLFPHMNVKKNLEF-GMRMK-K-----IKDP--KRVLDTARDLKIEH--LLDRNPLTLSGGEQQRVALAR  140 (348)
T ss_dssp             HTCEEECTTCCCCTTSCHHHHHHH-HHHHH-C-----CCCH--HHHHHHHHHTTCTT--TTTSCGGGSCHHHHHHHHHHH
T ss_pred             CcEEEEecCcccCCCCCHHHHHHH-HHHHc-C-----CCHH--HHHHHHHHHcCCch--HhcCChhhCCHHHHHHHHHHH
Confidence            789999999999999999766543 21110 0     1111  44443444433221  467778888888888888999


Q ss_pred             hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765        188 ELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       188 aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                      ||+.+|++|+|||||+|||+.++.++.+.|++++++ |+|+|++|||+. ++.++|||+++|++|+++..|+++++.
T Consensus       141 aL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~  216 (348)
T 3d31_A          141 ALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEIF  216 (348)
T ss_dssp             HTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred             HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            999999999999999999999999999999999764 999999999976 577899999999999999999999875

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=5.4e-44  Score=359.82  Aligned_cols=212  Identities=21%  Similarity=0.352  Sum_probs=175.7

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhhc
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAFR  107 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~~  107 (606)
                      |+++||+++|.        +  +|+|+|+++++ |+++|+||||||||||+|+|+|+.+| .+|+|.++|++... ...+
T Consensus         2 l~~~~l~~~y~--------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~   69 (240)
T 2onk_A            2 FLKVRAEKRLG--------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKP-DRGEVRLNGADITPLPPER   69 (240)
T ss_dssp             CEEEEEEEEET--------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEETTEECTTSCTTT
T ss_pred             EEEEEEEEEeC--------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCcCchhh
Confidence            68999999872        2  49999999999 99999999999999999999999877 59999999987532 3346


Q ss_pred             ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHHH
Q psy13765        108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSIA  186 (606)
Q Consensus       108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~IA  186 (606)
                      +.+|||+|++.+++.+|+.+.+.. +...      .+.+ ..++|+.   +++..-.+- ..|.+...||||||||++||
T Consensus        70 ~~i~~v~q~~~l~~~ltv~enl~~-~~~~------~~~~-~~~~~~~---~~l~~~~l~~~~~~~~~~LSgGqkqRv~lA  138 (240)
T 2onk_A           70 RGIGFVPQDYALFPHLSVYRNIAY-GLRN------VERV-ERDRRVR---EMAEKLGIAHLLDRKPARLSGGERQRVALA  138 (240)
T ss_dssp             SCCBCCCSSCCCCTTSCHHHHHHT-TCTT------SCHH-HHHHHHH---HHHHTTTCTTTTTCCGGGSCHHHHHHHHHH
T ss_pred             CcEEEEcCCCccCCCCcHHHHHHH-HHHH------cCCc-hHHHHHH---HHHHHcCCHHHhcCChhhCCHHHHHHHHHH
Confidence            779999999999999999887754 2211      0011 1234443   333333332 57888999999999999999


Q ss_pred             HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      +||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++|||++ .+.++||++++|++|++++.|+++++.+
T Consensus       139 ral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~  216 (240)
T 2onk_A          139 RALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELFS  216 (240)
T ss_dssp             HHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            9999999999999999999999999999999999764 999999999976 4678999999999999999999988754

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=100.00  E-value=4.6e-44  Score=368.02  Aligned_cols=222  Identities=22%  Similarity=0.334  Sum_probs=177.3

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---  102 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---  102 (606)
                      ...|+++||+++|        +++++|+|||+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++..   
T Consensus        19 ~~~l~~~~l~~~y--------~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p-~~G~I~~~g~~~~~~~   89 (279)
T 2ihy_A           19 HMLIQLDQIGRMK--------QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA-TSGTVNLFGKMPGKVG   89 (279)
T ss_dssp             CEEEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEETTBCCC---
T ss_pred             CceEEEEeEEEEE--------CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCeEEEECCEEccccc
Confidence            4569999999997        335799999999999999999999999999999999999877 5999999998654   


Q ss_pred             --hhhhcccEEEEccCCCCC--CCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCc
Q psy13765        103 --INAFRRVSCYIQQDDRLQ--PLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPN  177 (606)
Q Consensus       103 --~~~~~~~~~yv~Q~~~l~--~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~  177 (606)
                        ...+++.+|||+|++.+.  +.+||.+.+.. +...... ..+..+...++|+.-+.+.+   .+- .+|.+...|||
T Consensus        90 ~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~-~~~~~~~-~~~~~~~~~~~~~~~~l~~~---gl~~~~~~~~~~LSg  164 (279)
T 2ihy_A           90 YSAETVRQHIGFVSHSLLEKFQEGERVIDVVIS-GAFKSIG-VYQDIDDEIRNEAHQLLKLV---GMSAKAQQYIGYLST  164 (279)
T ss_dssp             CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHT-TC----------CCHHHHHHHHHHHHHT---TCGGGTTSBGGGSCH
T ss_pred             CCHHHHcCcEEEEEcCcccccCCCCCHHHHHHh-hhhhccc-cccCCcHHHHHHHHHHHHHc---CChhHhcCChhhCCH
Confidence              244577899999997643  35699887753 2211000 00011222334443333333   232 56888999999


Q ss_pred             hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE--EEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765        178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTI--ICTIHQPSATLFQMFDQVYLLSGGQCLY  255 (606)
Q Consensus       178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~ti--i~~~H~~~~~i~~~~D~v~~L~~G~~~~  255 (606)
                      ||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+||  |++|||++ .+.++||++++|++|++++
T Consensus       165 GqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~G~i~~  243 (279)
T 2ihy_A          165 GEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDGQSIQ  243 (279)
T ss_dssp             HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999998779999  99999987 4668999999999999999


Q ss_pred             EcChhHH
Q psy13765        256 QGATDQL  262 (606)
Q Consensus       256 ~G~~~~~  262 (606)
                      .|+++++
T Consensus       244 ~g~~~~~  250 (279)
T 2ihy_A          244 QGAVEDI  250 (279)
T ss_dssp             EEEHHHH
T ss_pred             ECCHHHH
Confidence            9998876

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=100.00  E-value=7.2e-43  Score=353.20  Aligned_cols=215  Identities=27%  Similarity=0.446  Sum_probs=174.0

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---  102 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---  102 (606)
                      ...++++||+++|+      .+++.+|+|||++|++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++..   
T Consensus         5 ~~~~~~~~l~~~y~------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~I~i~g~~~~~~~   77 (247)
T 2ff7_A            5 HHDITFRNIRFRYK------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQVLIDGHDLALAD   77 (247)
T ss_dssp             CEEEEEEEEEEESS------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEETTTSC
T ss_pred             cCceeEEEEEEEeC------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEEhhhCC
Confidence            35799999999862      1235799999999999999999999999999999999999877 5999999998753   


Q ss_pred             hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHH------HhcC-C-cc-cccCCCCC
Q psy13765        103 INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALE------LINN-P-RV-MFLDEPTT  173 (606)
Q Consensus       103 ~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~------L~~~-~-~~-~~~de~~~  173 (606)
                      ...+++.++||+|++.+++ .|+.+.+.. +..        ..+   ++++.-+.+      ++.. | .+ -.++++..
T Consensus        78 ~~~~~~~i~~v~Q~~~l~~-~tv~enl~~-~~~--------~~~---~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~  144 (247)
T 2ff7_A           78 PNWLRRQVGVVLQDNVLLN-RSIIDNISL-ANP--------GMS---VEKVIYAAKLAGAHDFISELREGYNTIVGEQGA  144 (247)
T ss_dssp             HHHHHHHEEEECSSCCCTT-SBHHHHHTT-TCT--------TCC---HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTT
T ss_pred             HHHHHhcEEEEeCCCcccc-ccHHHHHhc-cCC--------CCC---HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCC
Confidence            3446778999999999887 599877653 211        011   122221111      1222 1 11 14577888


Q ss_pred             CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765        174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC  253 (606)
Q Consensus       174 ~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~  253 (606)
                      .|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ +|+|||++||+++. + +.||++++|++|++
T Consensus       145 ~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~G~i  221 (247)
T 2ff7_A          145 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEKGKI  221 (247)
T ss_dssp             CCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEETTEE
T ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEECCEE
Confidence            999999999999999999999999999999999999999999999995 59999999999874 4 56999999999999


Q ss_pred             EEEcChhHHH
Q psy13765        254 LYQGATDQLV  263 (606)
Q Consensus       254 ~~~G~~~~~~  263 (606)
                      ++.|+++++.
T Consensus       222 ~~~g~~~~l~  231 (247)
T 2ff7_A          222 VEQGKHKELL  231 (247)
T ss_dssp             EEEECHHHHH
T ss_pred             EEECCHHHHH
Confidence            9999998874

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=100.00  E-value=5.2e-43  Score=358.90  Aligned_cols=219  Identities=22%  Similarity=0.334  Sum_probs=174.1

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~  104 (606)
                      .|+++||++.|+.+     +++.+|+|||++|++||+++|+||||||||||||+|+|+.+| .+|+|.++|++..   ..
T Consensus        16 ~l~~~~l~~~y~~~-----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p-~~G~I~~~g~~i~~~~~~   89 (271)
T 2ixe_A           16 LVKFQDVSFAYPNH-----PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP-TGGKVLLDGEPLVQYDHH   89 (271)
T ss_dssp             CEEEEEEEECCTTC-----TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEEGGGBCHH
T ss_pred             eEEEEEEEEEeCCC-----CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCCEEEECCEEcccCCHH
Confidence            59999999986310     125799999999999999999999999999999999999877 5999999998653   34


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCCh-HHHHH-HHH--HHHHhcC-C-cc-cccCCCCCCCCc
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSG-GQKKR-LSI--ALELINN-P-RV-MFLDEPTTSNPN  177 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSg-GqrqR-v~i--a~~L~~~-~-~~-~~~de~~~~~s~  177 (606)
                      .+++.++||+|++.+++ .||.+.+.. +...        .+. .+..+ ...  +.+++.. | .+ -.+|++...|||
T Consensus        90 ~~~~~i~~v~Q~~~l~~-~tv~enl~~-~~~~--------~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSg  159 (271)
T 2ixe_A           90 YLHTQVAAVGQEPLLFG-RSFRENIAY-GLTR--------TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSG  159 (271)
T ss_dssp             HHHHHEEEECSSCCCCS-SBHHHHHHT-TCSS--------CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCH
T ss_pred             HHhccEEEEecCCcccc-ccHHHHHhh-hccc--------CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCH
Confidence            45678999999999887 499887754 3211        111 11111 100  1122211 1 12 146888899999


Q ss_pred             hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcEEEE
Q psy13765        178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ  256 (606)
Q Consensus       178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~  256 (606)
                      ||||||.|||||+.+|++|||||||+|||+.++..+++.|+++++ +|+|||++||+++. + ..||++++|++|+++..
T Consensus       160 Gq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~-~-~~~d~v~~l~~G~i~~~  237 (271)
T 2ixe_A          160 GQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL-A-ERAHHILFLKEGSVCEQ  237 (271)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH-H-TTCSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEE
Confidence            999999999999999999999999999999999999999999865 48999999999763 4 46999999999999999


Q ss_pred             cChhHHHH
Q psy13765        257 GATDQLVN  264 (606)
Q Consensus       257 G~~~~~~~  264 (606)
                      |+++++.+
T Consensus       238 g~~~~l~~  245 (271)
T 2ixe_A          238 GTHLQLME  245 (271)
T ss_dssp             ECHHHHHH
T ss_pred             CCHHHHHh
Confidence            99988764

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=100.00  E-value=6.3e-43  Score=363.42  Aligned_cols=217  Identities=23%  Similarity=0.358  Sum_probs=174.4

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---h
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---I  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~  103 (606)
                      ..|+++||+|+|+       +.+.+|+|||++|++||++||+||||||||||+|+|+|++++ .+|+|.+||.+..   .
T Consensus        52 ~~i~~~~vs~~y~-------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p-~~G~I~i~G~~i~~~~~  123 (306)
T 3nh6_A           52 GRIEFENVHFSYA-------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI-SSGCIRIDGQDISQVTQ  123 (306)
T ss_dssp             CCEEEEEEEEESS-------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC-SEEEEEETTEETTSBCH
T ss_pred             CeEEEEEEEEEcC-------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC-CCcEEEECCEEcccCCH
Confidence            3699999999973       235799999999999999999999999999999999999887 5999999998753   4


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHH----HHHHHHHhcCCc-c-cccCCCCCCCCc
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKR----LSIALELINNPR-V-MFLDEPTTSNPN  177 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqR----v~ia~~L~~~~~-~-~~~de~~~~~s~  177 (606)
                      ..+|+.+|||+|++.+++. ||.+.+.. +...        .+..+..+    +.+...+...|+ + -..++....|||
T Consensus       124 ~~~r~~i~~v~Q~~~lf~~-Tv~eNi~~-~~~~--------~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSG  193 (306)
T 3nh6_A          124 ASLRSHIGVVPQDTVLFND-TIADNIRY-GRVT--------AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSG  193 (306)
T ss_dssp             HHHHHTEEEECSSCCCCSE-EHHHHHHT-TSTT--------CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCH
T ss_pred             HHHhcceEEEecCCccCcc-cHHHHHHh-hccc--------CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCH
Confidence            5678899999999999864 88766643 3211        11111111    111111222221 1 145777888999


Q ss_pred             hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      ||||||+|||||+.+|+||||||||||||+.++..+.+.|+++.+ ++|+|+++|+++. + ..||+|++|++|++++.|
T Consensus       194 GqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~-~-~~aD~i~vl~~G~iv~~G  270 (306)
T 3nh6_A          194 GEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLST-V-VNADQILVIKDGCIVERG  270 (306)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHH-H-HTCSEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHH-H-HcCCEEEEEECCEEEEEC
Confidence            999999999999999999999999999999999999999999865 7999999999874 5 459999999999999999


Q ss_pred             ChhHHHH
Q psy13765        258 ATDQLVN  264 (606)
Q Consensus       258 ~~~~~~~  264 (606)
                      +++++.+
T Consensus       271 ~~~el~~  277 (306)
T 3nh6_A          271 RHEALLS  277 (306)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHh
Confidence            9999875

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=100.00  E-value=6.3e-43  Score=353.89  Aligned_cols=207  Identities=23%  Similarity=0.363  Sum_probs=173.0

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~  104 (606)
                      .|+++||+++            ++|+|+|+++++||+++|+||||||||||||+|+|+.++ . |+|.++|++..   ..
T Consensus         4 ~l~~~~l~~~------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p-~-G~i~~~g~~~~~~~~~   69 (249)
T 2qi9_C            4 VMQLQDVAES------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-K-GSIQFAGQPLEAWSAT   69 (249)
T ss_dssp             EEEEEEEEET------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-E-EEEEETTEEGGGSCHH
T ss_pred             EEEEEceEEE------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-C-eEEEECCEECCcCCHH
Confidence            5899999863            589999999999999999999999999999999999876 5 99999998642   34


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS  184 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~  184 (606)
                      .+++.++||+|++.+++.+|+.+.+... ...  .     .+   ++++.-+.+.+.-.+  .+|.+...||||||||+.
T Consensus        70 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~-~~~--~-----~~---~~~~~~~l~~~~l~~--~~~~~~~~LSgGq~qrv~  136 (249)
T 2qi9_C           70 KLALHRAYLSQQQTPPFATPVWHYLTLH-QHD--K-----TR---TELLNDVAGALALDD--KLGRSTNQLSGGEWQRVR  136 (249)
T ss_dssp             HHHHHEEEECSCCCCCTTCBHHHHHHTT-CSS--T-----TC---HHHHHHHHHHTTCGG--GTTSBGGGCCHHHHHHHH
T ss_pred             HHhceEEEECCCCccCCCCcHHHHHHHh-hcc--C-----Cc---HHHHHHHHHHcCChh--HhcCChhhCCHHHHHHHH
Confidence            5667899999999999999998877642 110  0     11   444443333332211  467888889999999999


Q ss_pred             HHHhhhcCCc-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        185 IALELINNPR-------VMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       185 IA~aL~~~P~-------lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      ||+||+.+|+       +|+|||||+|||+.++..+.+.|++++++|+|||++|||++ .+.++||++++|++|++++.|
T Consensus       137 lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~g  215 (249)
T 2qi9_C          137 LAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASG  215 (249)
T ss_dssp             HHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEE
T ss_pred             HHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeC
Confidence            9999999999       99999999999999999999999999877999999999976 466899999999999999999


Q ss_pred             ChhHH
Q psy13765        258 ATDQL  262 (606)
Q Consensus       258 ~~~~~  262 (606)
                      +++++
T Consensus       216 ~~~~~  220 (249)
T 2qi9_C          216 RREEV  220 (249)
T ss_dssp             EHHHH
T ss_pred             CHHHH
Confidence            98876

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=100.00  E-value=4.1e-43  Score=355.64  Aligned_cols=219  Identities=24%  Similarity=0.316  Sum_probs=168.9

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCC--CCCCCccEEEECCccCCh--
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY--RSNGVTGQILTNGHSRNI--  103 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~--~~~~~~G~I~~~G~~~~~--  103 (606)
                      .|+++||+++|        +++.+|+|||+++++||+++|+||||||||||+|+|+|+  .++ .+|+|.++|++...  
T Consensus         3 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p-~~G~I~~~g~~~~~~~   73 (250)
T 2d2e_A            3 QLEIRDLWASI--------DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV-ERGEILLDGENILELS   73 (250)
T ss_dssp             EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE-EEEEEEETTEECTTSC
T ss_pred             eEEEEeEEEEE--------CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-CceEEEECCEECCCCC
Confidence            48999999997        336799999999999999999999999999999999998  444 58999999987532  


Q ss_pred             -hhh-cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCC-CCchh
Q psy13765        104 -NAF-RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTS-NPNDQ  179 (606)
Q Consensus       104 -~~~-~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~-~s~g~  179 (606)
                       ... ++.++||+|++.+++.+|+.+.+... .....+.   ..+..+ ++++.-+.+.+.-. --+.|.+... |||||
T Consensus        74 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~-~~~~~~~---~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~~~LSgGq  148 (250)
T 2d2e_A           74 PDERARKGLFLAFQYPVEVPGVTIANFLRLA-LQAKLGR---EVGVAEFWTKVKKALELLDWD-ESYLSRYLNEGFSGGE  148 (250)
T ss_dssp             HHHHHHTTBCCCCCCCC-CCSCBHHHHHHHH-HHHHHTS---CCCHHHHHHHHHHHHHHHTCC-GGGGGSBTTCC----H
T ss_pred             HHHHHhCcEEEeccCCccccCCCHHHHHHHH-HHhhccc---cCCHHHHHHHHHHHHHHcCCC-hhHhcCCcccCCCHHH
Confidence             222 34589999999999999998876531 1100010   011112 33443333333211 0246888888 99999


Q ss_pred             hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh-cceeeeecCCcEEEEcC
Q psy13765        180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQM-FDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~-~D~v~~L~~G~~~~~G~  258 (606)
                      ||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++|||++. +..+ ||++++|++|++++.|+
T Consensus       149 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~~~d~v~~l~~G~i~~~g~  227 (250)
T 2d2e_A          149 KKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRI-LNYIQPDKVHVMMDGRVVATGG  227 (250)
T ss_dssp             HHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGG-GGTSCCSEEEEEETTEEEEEES
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhcCCEEEEEECCEEEEEeC
Confidence            999999999999999999999999999999999999999997779999999999874 5566 59999999999999999


Q ss_pred             hhH
Q psy13765        259 TDQ  261 (606)
Q Consensus       259 ~~~  261 (606)
                      ++.
T Consensus       228 ~~~  230 (250)
T 2d2e_A          228 PEL  230 (250)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            873

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=100.00  E-value=2.9e-42  Score=349.92  Aligned_cols=211  Identities=21%  Similarity=0.315  Sum_probs=172.4

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhc
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR  107 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~  107 (606)
                      .|+++||+++|.       +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.          .+
T Consensus         4 ~l~i~~l~~~y~-------~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~I~----------~~   65 (253)
T 2nq2_C            4 ALSVENLGFYYQ-------AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP-IQGKIE----------VY   65 (253)
T ss_dssp             EEEEEEEEEEET-------TTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC-SEEEEE----------EC
T ss_pred             eEEEeeEEEEeC-------CCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEE----------Ee
Confidence            489999999972       146799999999999999999999999999999999999877 599998          34


Q ss_pred             ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHH
Q psy13765        108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL  187 (606)
Q Consensus       108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~  187 (606)
                      +.++||+|++.+++.+||.+.+... ....... .+..+...++++.-+.+.+.-.+  .+|.+...|||||||||+||+
T Consensus        66 ~~i~~v~q~~~~~~~~tv~enl~~~-~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~LSgGq~qrv~lAr  141 (253)
T 2nq2_C           66 QSIGFVPQFFSSPFAYSVLDIVLMG-RSTHINT-FAKPKSHDYQVAMQALDYLNLTH--LAKREFTSLSGGQRQLILIAR  141 (253)
T ss_dssp             SCEEEECSCCCCSSCCBHHHHHHGG-GGGGSCT-TCCCCHHHHHHHHHHHHHTTCGG--GTTSBGGGSCHHHHHHHHHHH
T ss_pred             ccEEEEcCCCccCCCCCHHHHHHHh-hhhhccc-ccCCCHHHHHHHHHHHHHcCChH--HhcCChhhCCHHHHHHHHHHH
Confidence            6799999999999999998877542 1110000 00012223455544444433221  568889999999999999999


Q ss_pred             hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765        188 ELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL  262 (606)
Q Consensus       188 aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~  262 (606)
                      ||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++|||++ .+.++||++++|++|+ ++.|+++++
T Consensus       142 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~-~~~g~~~~~  215 (253)
T 2nq2_C          142 AIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNKQN-FKFGETRNI  215 (253)
T ss_dssp             HHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCe-EecCCHHHH
Confidence            999999999999999999999999999999999876 999999999976 4668999999999999 999998876

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=100.00  E-value=1.7e-42  Score=354.41  Aligned_cols=231  Identities=22%  Similarity=0.239  Sum_probs=177.9

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCccEEEECCccCC---
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS-NGVTGQILTNGHSRN---  102 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~-~~~~G~I~~~G~~~~---  102 (606)
                      ..|+++||+++|        +++++|+|||++|++||+++|+||||||||||+|+|+|+.. ++.+|+|.++|++..   
T Consensus        19 ~~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~   90 (267)
T 2zu0_C           19 HMLSIKDLHVSV--------EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALS   90 (267)
T ss_dssp             -CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSC
T ss_pred             ceEEEEeEEEEE--------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCC
Confidence            359999999987        34679999999999999999999999999999999999842 225899999998653   


Q ss_pred             hhhh-cccEEEEccCCCCCCCCcHHHHHHHcCCccccC-CccccCChHH-HHHHHHHHHHhcCCcc--cccCCCCC-CCC
Q psy13765        103 INAF-RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQN-TRSSQLSGGQ-KKRLSIALELINNPRV--MFLDEPTT-SNP  176 (606)
Q Consensus       103 ~~~~-~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~-~~~~~lSgGq-rqRv~ia~~L~~~~~~--~~~de~~~-~~s  176 (606)
                      .... ++.++||+|++.+++.+|+.+.+... ...... ......+..+ ++|+.   +++..-.+  -+.|.+.. .||
T Consensus        91 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~gl~~~~~~~~~~~~LS  166 (267)
T 2zu0_C           91 PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTA-LNAVRSYRGQETLDRFDFQDLME---EKIALLKMPEDLLTRSVNVGFS  166 (267)
T ss_dssp             HHHHHHHTEEEECSSCCCCTTCBHHHHHHHH-HHHHHHGGGCCCCCHHHHHHHHH---HHHHHTTCCTTTTTSBTTTTCC
T ss_pred             HHHHhhCCEEEEccCccccccccHHHHHHHH-HHhhhhhhccccCCHHHHHHHHH---HHHHHcCCChhHhcCCcccCCC
Confidence            2222 34599999999999999997766431 100000 0001122222 33443   33332233  24677776 599


Q ss_pred             chhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh-cceeeeecCCcEEE
Q psy13765        177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQM-FDQVYLLSGGQCLY  255 (606)
Q Consensus       177 ~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~-~D~v~~L~~G~~~~  255 (606)
                      |||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||+.. +..+ ||++++|++|++++
T Consensus       167 gGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~-~~~~~~d~v~~l~~G~i~~  245 (267)
T 2zu0_C          167 GGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQGRIVK  245 (267)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG-GGTSCCSEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH-HHhhcCCEEEEEECCEEEE
Confidence            999999999999999999999999999999999999999999997779999999999864 5455 89999999999999


Q ss_pred             EcChhHHHHHHHhCCC
Q psy13765        256 QGATDQLVNYLSSVNL  271 (606)
Q Consensus       256 ~G~~~~~~~~f~~~g~  271 (606)
                      .|+++++.. ++..++
T Consensus       246 ~g~~~~~~~-~~~~~~  260 (267)
T 2zu0_C          246 SGDFTLVKQ-LEEQGY  260 (267)
T ss_dssp             EECTTHHHH-HHTTTC
T ss_pred             EcCHHHHhh-hhhcch
Confidence            999988754 344444

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=100.00  E-value=1.2e-42  Score=350.64  Aligned_cols=213  Identities=27%  Similarity=0.474  Sum_probs=171.4

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INA  105 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~  105 (606)
                      |+++||+++|+       +++++|+|||+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++..   ...
T Consensus         2 l~~~~l~~~y~-------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~   73 (243)
T 1mv5_A            2 LSARHVDFAYD-------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP-TAGEITIDGQPIDNISLEN   73 (243)
T ss_dssp             EEEEEEEECSS-------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC-SBSCEEETTEESTTTSCSC
T ss_pred             EEEEEEEEEeC-------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEEhhhCCHHH
Confidence            78999999862       235799999999999999999999999999999999999877 5999999998653   234


Q ss_pred             hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc---------ccCCCCCCCC
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM---------FLDEPTTSNP  176 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~---------~~de~~~~~s  176 (606)
                      +++.++||+|++.+++. |+.+.+.. ++..       ..+   ++++.-+.+.+.-.+.+         .++++...||
T Consensus        74 ~~~~i~~v~q~~~l~~~-tv~enl~~-~~~~-------~~~---~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LS  141 (243)
T 1mv5_A           74 WRSQIGFVSQDSAIMAG-TIRENLTY-GLEG-------DYT---DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKIS  141 (243)
T ss_dssp             CTTTCCEECCSSCCCCE-EHHHHTTS-CTTS-------CSC---HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCC
T ss_pred             HHhhEEEEcCCCccccc-cHHHHHhh-hccC-------CCC---HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCC
Confidence            56789999999998874 88776542 2111       111   22333222322221111         2356778999


Q ss_pred             chhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEE
Q psy13765        177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ  256 (606)
Q Consensus       177 ~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~  256 (606)
                      |||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ +|+|||++||+++ .+ +.||++++|++|+++..
T Consensus       142 gGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~  218 (243)
T 1mv5_A          142 GGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEKGQITGS  218 (243)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEETTEECCC
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEe
Confidence            999999999999999999999999999999999999999999997 6999999999976 34 56999999999999999


Q ss_pred             cChhHHHH
Q psy13765        257 GATDQLVN  264 (606)
Q Consensus       257 G~~~~~~~  264 (606)
                      |+++++.+
T Consensus       219 g~~~~~~~  226 (243)
T 1mv5_A          219 GKHNELVA  226 (243)
T ss_dssp             SCHHHHHH
T ss_pred             CCHHHHHh
Confidence            99988754

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=100.00  E-value=1.1e-41  Score=347.00  Aligned_cols=215  Identities=23%  Similarity=0.381  Sum_probs=171.7

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---h
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---I  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~  103 (606)
                      ..|+++||+++|+.+     ..+.+|+|||+++++||+++|+||||||||||+|+|+|+.++  +|+|.++|++..   .
T Consensus        16 ~~l~i~~l~~~y~~~-----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~G~I~i~g~~i~~~~~   88 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQ-----TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA--EGDIKIGGKNVNKYNR   88 (260)
T ss_dssp             CCEEEEEEEECCTTC-----CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--EEEEEETTEEGGGBCH
T ss_pred             CeEEEEEEEEEeCCC-----CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CeEEEECCEEhhhcCH
Confidence            459999999987321     125699999999999999999999999999999999999863  899999998653   3


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHh-------cCCccc--ccCCCCCC
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELI-------NNPRVM--FLDEPTTS  174 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~-------~~~~~~--~~de~~~~  174 (606)
                      ..+++.++||+|++.+++ .|+.+.+.. +...        .+   ++++.-+.+.+       .-|+-+  .++++...
T Consensus        89 ~~~~~~i~~v~Q~~~l~~-~tv~enl~~-~~~~--------~~---~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~  155 (260)
T 2ghi_A           89 NSIRSIIGIVPQDTILFN-ETIKYNILY-GKLD--------AT---DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMK  155 (260)
T ss_dssp             HHHHTTEEEECSSCCCCS-EEHHHHHHT-TCTT--------CC---HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBC
T ss_pred             HHHhccEEEEcCCCcccc-cCHHHHHhc-cCCC--------CC---HHHHHHHHHHhCCHHHHHhccccccccccCCcCc
Confidence            456778999999999886 599777754 2210        11   12221111111       112111  24567889


Q ss_pred             CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765        175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL  254 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~  254 (606)
                      |||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++ |+|||++||+++. + +.||++++|++|+++
T Consensus       156 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~G~i~  232 (260)
T 2ghi_A          156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNKGKIV  232 (260)
T ss_dssp             CCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEETTEEE
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEE
Confidence            999999999999999999999999999999999999999999999965 8999999999874 4 569999999999999


Q ss_pred             EEcChhHHHH
Q psy13765        255 YQGATDQLVN  264 (606)
Q Consensus       255 ~~G~~~~~~~  264 (606)
                      ..|+++++..
T Consensus       233 ~~g~~~~l~~  242 (260)
T 2ghi_A          233 EKGTHKDLLK  242 (260)
T ss_dssp             EEECHHHHHH
T ss_pred             EECCHHHHHh
Confidence            9999988754

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=100.00  E-value=8.1e-42  Score=338.09  Aligned_cols=204  Identities=17%  Similarity=0.305  Sum_probs=164.5

Q ss_pred             CceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChh
Q psy13765         25 DRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNIN  104 (606)
Q Consensus        25 ~~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~  104 (606)
                      .+-.|+++||+++|        ++ ++|+|+|+++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++..  
T Consensus         7 ~~~~l~~~~ls~~y--------~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p-~~G~I~~~g~~~~--   74 (214)
T 1sgw_A            7 HGSKLEIRDLSVGY--------DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP-LKGEIIYNGVPIT--   74 (214)
T ss_dssp             --CEEEEEEEEEES--------SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEETTEEGG--
T ss_pred             CCceEEEEEEEEEe--------CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEhh--
Confidence            34579999999985        33 799999999999999999999999999999999999877 5999999998764  


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS  184 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~  184 (606)
                      ..++.++||+|++.+++.+|+.+.+... .. ...     +. .+++++.-+.+.+.-.+  . +++...||||||||++
T Consensus        75 ~~~~~i~~v~q~~~~~~~~tv~enl~~~-~~-~~~-----~~-~~~~~~~~~l~~~gl~~--~-~~~~~~LSgGqkqrv~  143 (214)
T 1sgw_A           75 KVKGKIFFLPEEIIVPRKISVEDYLKAV-AS-LYG-----VK-VNKNEIMDALESVEVLD--L-KKKLGELSQGTIRRVQ  143 (214)
T ss_dssp             GGGGGEEEECSSCCCCTTSBHHHHHHHH-HH-HTT-----CC-CCHHHHHHHHHHTTCCC--T-TSBGGGSCHHHHHHHH
T ss_pred             hhcCcEEEEeCCCcCCCCCCHHHHHHHH-HH-hcC-----Cc-hHHHHHHHHHHHcCCCc--C-CCChhhCCHHHHHHHH
Confidence            3577899999999999999997776542 10 000     00 11345543444443222  2 7888899999999999


Q ss_pred             HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765        185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC  253 (606)
Q Consensus       185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~  253 (606)
                      ||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++.. +..++|++++++ |++
T Consensus       144 laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~-~~~~~d~v~~~~-~~~  210 (214)
T 1sgw_A          144 LASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS-YCDVNENLHKYS-TKI  210 (214)
T ss_dssp             HHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT-TSSEEEEGGGGB-C--
T ss_pred             HHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEeC-Ccc
Confidence            9999999999999999999999999999999999998779999999999874 668889988764 443

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=2.3e-41  Score=345.02  Aligned_cols=211  Identities=20%  Similarity=0.257  Sum_probs=162.2

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcc
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR  108 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~  108 (606)
                      |+++||+++|+.+    ...+.+|+|+|++++ ||+++|+||||||||||||+|+|+. | .+|+|.++|++......++
T Consensus         2 l~~~~l~~~y~~~----~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p-~~G~I~~~g~~~~~~~~~~   74 (263)
T 2pjz_A            2 IQLKNVGITLSGK----GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P-YSGNIFINGMEVRKIRNYI   74 (263)
T ss_dssp             EEEEEEEEEEEEE----TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C-CEEEEEETTEEGGGCSCCT
T ss_pred             EEEEEEEEEeCCC----CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C-CCcEEEECCEECcchHHhh
Confidence            7899999997420    012579999999999 9999999999999999999999998 6 5999999997653211266


Q ss_pred             cEE-EEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHH
Q psy13765        109 VSC-YIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL  187 (606)
Q Consensus       109 ~~~-yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~  187 (606)
                      .++ ||+|++.+  .+|+.+.+.... . ..     ..   .++++.-+.+.+.-. --.+|.+...||||||||+.||+
T Consensus        75 ~i~~~v~Q~~~l--~~tv~enl~~~~-~-~~-----~~---~~~~~~~~l~~~gl~-~~~~~~~~~~LSgGqkqRv~lAr  141 (263)
T 2pjz_A           75 RYSTNLPEAYEI--GVTVNDIVYLYE-E-LK-----GL---DRDLFLEMLKALKLG-EEILRRKLYKLSAGQSVLVRTSL  141 (263)
T ss_dssp             TEEECCGGGSCT--TSBHHHHHHHHH-H-HT-----CC---CHHHHHHHHHHTTCC-GGGGGSBGGGSCHHHHHHHHHHH
T ss_pred             heEEEeCCCCcc--CCcHHHHHHHhh-h-hc-----ch---HHHHHHHHHHHcCCC-hhHhcCChhhCCHHHHHHHHHHH
Confidence            799 99999987  788866554321 0 00     00   123332222222111 01356677777777777777888


Q ss_pred             hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcc-eeeeecCCcEEEEcChhHHH
Q psy13765        188 ELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFD-QVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       188 aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D-~v~~L~~G~~~~~G~~~~~~  263 (606)
                      ||+.+|++|+|||||+|||+.++..+.+.|+++++   |||++|||+. .+.++|| ++++|++|++++.|+++++.
T Consensus       142 aL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~G~i~~~g~~~~l~  214 (263)
T 2pjz_A          142 ALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVGNRLQGPISVSELL  214 (263)
T ss_dssp             HHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred             HHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEECCEEEEecCHHHHH
Confidence            88888999999999999999999999999998754   9999999986 4668999 99999999999999998875

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.2e-41  Score=361.19  Aligned_cols=211  Identities=18%  Similarity=0.250  Sum_probs=164.1

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---h
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---I  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~  103 (606)
                      ..|+++||+++|+      .+++.+|+|||++|++||+++|+||||||||||||+|+|+.+  .+|+|.++|++..   .
T Consensus        18 ~~i~~~~l~~~y~------~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--~~G~I~i~G~~i~~~~~   89 (390)
T 3gd7_A           18 GQMTVKDLTAKYT------EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGEIQIDGVSWDSITL   89 (390)
T ss_dssp             CCEEEEEEEEESS------SSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE--EEEEEEESSCBTTSSCH
T ss_pred             CeEEEEEEEEEec------CCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCeEEEECCEECCcCCh
Confidence            4699999999973      234679999999999999999999999999999999999976  4899999998753   3


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCC----------
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT----------  173 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~----------  173 (606)
                      ..+++.+|||+|++.+++ .||.+.+...+          ..+   ++++.-+.+.+.-.+  ++|....          
T Consensus        90 ~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~----------~~~---~~~v~~~l~~~~L~~--~~~~~p~~l~~~i~~~g  153 (390)
T 3gd7_A           90 EQWRKAFGVIPQKVFIFS-GTFRKNLDPNA----------AHS---DQEIWKVADEVGLRS--VIEQFPGKLDFVLVDGG  153 (390)
T ss_dssp             HHHHHTEEEESCCCCCCS-EEHHHHHCTTC----------CSC---HHHHHHHHHHTTCHH--HHTTSTTGGGCEECTTT
T ss_pred             HHHhCCEEEEcCCcccCc-cCHHHHhhhcc----------ccC---HHHHHHHHHHhCCHH--HHhhccccccccccccc
Confidence            456788999999999998 58765542110          011   222222222221110  2233333          


Q ss_pred             -CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765        174 -SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ  252 (606)
Q Consensus       174 -~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~  252 (606)
                       .|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++. +|+|+|+++||.+ . ...|||+++|++|+
T Consensus       154 ~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e-~-~~~aDri~vl~~G~  230 (390)
T 3gd7_A          154 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE-A-MLECDQFLVIEENK  230 (390)
T ss_dssp             TTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG-G-GTTCSEEEEEETTE
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH-H-HHhCCEEEEEECCE
Confidence             377777777777888888899999999999999999999999999864 4899999999975 3 46799999999999


Q ss_pred             EEEEcChhHHHH
Q psy13765        253 CLYQGATDQLVN  264 (606)
Q Consensus       253 ~~~~G~~~~~~~  264 (606)
                      ++..|+++++.+
T Consensus       231 i~~~g~~~el~~  242 (390)
T 3gd7_A          231 VRQYDSILELYH  242 (390)
T ss_dssp             EEEESSHHHHHH
T ss_pred             EEEECCHHHHHh
Confidence            999999999864

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=100.00  E-value=1.1e-40  Score=333.51  Aligned_cols=205  Identities=21%  Similarity=0.319  Sum_probs=163.2

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhc
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR  107 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~  107 (606)
                      .|+++||+++|+      .+++++|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|         
T Consensus         6 ~l~~~~l~~~y~------~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g---------   69 (229)
T 2pze_A            6 EVVMENVTAFWE------EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSG---------   69 (229)
T ss_dssp             EEEEEEEEECSS------TTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEECS---------
T ss_pred             eEEEEEEEEEeC------CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC-CccEEEECC---------
Confidence            589999999863      1346799999999999999999999999999999999999877 599999998         


Q ss_pred             ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHH----HHHHHHhcCCcc--cccCCCCCCCCchhhh
Q psy13765        108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL----SIALELINNPRV--MFLDEPTTSNPNDQKK  181 (606)
Q Consensus       108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv----~ia~~L~~~~~~--~~~de~~~~~s~g~~k  181 (606)
                       .++||+|++.+++. |+.+.+.. +..         ......+.+    .+...+-..|..  -..+++...|||||||
T Consensus        70 -~i~~v~q~~~~~~~-tv~enl~~-~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkq  137 (229)
T 2pze_A           70 -RISFCSQFSWIMPG-TIKENIIF-GVS---------YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRA  137 (229)
T ss_dssp             -CEEEECSSCCCCSB-CHHHHHHT-TSC---------CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHH
T ss_pred             -EEEEEecCCcccCC-CHHHHhhc-cCC---------cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHH
Confidence             38999999999886 99877753 221         011111111    111111111111  1346677899999999


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKL-LKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD  260 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~-l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~  260 (606)
                      |+.|||||+.+|++|+|||||+|||+.++..+++. +++++ +|+|||++||+++ .+ ..||++++|++|++++.|+++
T Consensus       138 rv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~  214 (229)
T 2pze_A          138 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFS  214 (229)
T ss_dssp             HHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHCSEEEEEETTEEEEEECHH
T ss_pred             HHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HH-HhCCEEEEEECCEEEEECCHH
Confidence            99999999999999999999999999999999997 45554 4899999999976 34 469999999999999999998


Q ss_pred             HHH
Q psy13765        261 QLV  263 (606)
Q Consensus       261 ~~~  263 (606)
                      ++.
T Consensus       215 ~~~  217 (229)
T 2pze_A          215 ELQ  217 (229)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=100.00  E-value=1.9e-40  Score=333.53  Aligned_cols=206  Identities=23%  Similarity=0.357  Sum_probs=164.9

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhc
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR  107 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~  107 (606)
                      .|+++||+++|.      .+++++|+|+|++|++||+++|+||||||||||+|+|+|+.+| .+|+|.++|         
T Consensus         3 ~l~~~~l~~~y~------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~I~~~g---------   66 (237)
T 2cbz_A            3 SITVRNATFTWA------RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK-VEGHVAIKG---------   66 (237)
T ss_dssp             CEEEEEEEEESC------TTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE-EEEEEEECS---------
T ss_pred             eEEEEEEEEEeC------CCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECC---------
Confidence            389999999863      1246799999999999999999999999999999999999876 599999998         


Q ss_pred             ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHh---cC-Cc--ccccCCCCCCCCchhhh
Q psy13765        108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELI---NN-PR--VMFLDEPTTSNPNDQKK  181 (606)
Q Consensus       108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~---~~-~~--~~~~de~~~~~s~g~~k  181 (606)
                       .++||+|++.+ +.+|+.+.+.. +..         .+..+.+++.-+..+.   .. |.  -..++++...|||||||
T Consensus        67 -~i~~v~Q~~~~-~~~tv~enl~~-~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkq  134 (237)
T 2cbz_A           67 -SVAYVPQQAWI-QNDSLRENILF-GCQ---------LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQ  134 (237)
T ss_dssp             -CEEEECSSCCC-CSEEHHHHHHT-TSC---------CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHH
T ss_pred             -EEEEEcCCCcC-CCcCHHHHhhC-ccc---------cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHH
Confidence             38999999875 57799777754 211         1112223322221111   11 11  01357888999999999


Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK---MISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~---~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      |++|||||+.+|++|+|||||+|||+.++..+++.|+   +++ +|+|||++||+++. + ..||++++|++|+++..|+
T Consensus       135 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~G~i~~~g~  211 (237)
T 2cbz_A          135 RVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSGGKISEMGS  211 (237)
T ss_dssp             HHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEETTEEEEEEC
T ss_pred             HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeCCEEEEeCC
Confidence            9999999999999999999999999999999999995   443 48999999999874 4 5799999999999999999


Q ss_pred             hhHHHH
Q psy13765        259 TDQLVN  264 (606)
Q Consensus       259 ~~~~~~  264 (606)
                      ++++.+
T Consensus       212 ~~~~~~  217 (237)
T 2cbz_A          212 YQELLA  217 (237)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            988754

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=7.6e-40  Score=369.59  Aligned_cols=218  Identities=20%  Similarity=0.316  Sum_probs=175.1

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~  103 (606)
                      -.|+++|++++|+.      +++++|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.+||++.   +.
T Consensus       340 ~~i~~~~v~~~y~~------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~-~~G~i~i~g~~i~~~~~  412 (587)
T 3qf4_A          340 GSVSFENVEFRYFE------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP-ERGRVEVDELDVRTVKL  412 (587)
T ss_dssp             CCEEEEEEEECSSS------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC-SEEEEEESSSBGGGBCH
T ss_pred             CcEEEEEEEEEcCC------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC-CCcEEEECCEEcccCCH
Confidence            36999999998742      346799999999999999999999999999999999999887 599999999865   34


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHH----HHHHHhcCCcc--cccCCCCCCCCc
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLS----IALELINNPRV--MFLDEPTTSNPN  177 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~----ia~~L~~~~~~--~~~de~~~~~s~  177 (606)
                      ..+|+.++||+|++.+++. |+.|.+.. +...        .+..+..+..    +...+..-|+=  -..+|....|||
T Consensus       413 ~~~r~~i~~v~Q~~~lf~~-tv~eni~~-~~~~--------~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSg  482 (587)
T 3qf4_A          413 KDLRGHISAVPQETVLFSG-TIKENLKW-GRED--------ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSG  482 (587)
T ss_dssp             HHHHHHEEEECSSCCCCSE-EHHHHHTT-TCSS--------CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCH
T ss_pred             HHHHhheEEECCCCcCcCc-cHHHHHhc-cCCC--------CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCH
Confidence            5678899999999999876 88766532 2111        1111211111    11111122211  145778888999


Q ss_pred             hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      |||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +|+|+|+++|+++. + +.|||+++|++|++++.|
T Consensus       483 GqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-~-~~~d~i~vl~~G~i~~~g  559 (587)
T 3qf4_A          483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT-A-LLADKILVLHEGKVAGFG  559 (587)
T ss_dssp             HHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH-H-TTSSEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHH-H-HhCCEEEEEECCEEEEEC
Confidence            99999999999999999999999999999999999999999985 58999999999864 4 689999999999999999


Q ss_pred             ChhHHHH
Q psy13765        258 ATDQLVN  264 (606)
Q Consensus       258 ~~~~~~~  264 (606)
                      +++|+.+
T Consensus       560 ~~~el~~  566 (587)
T 3qf4_A          560 THKELLE  566 (587)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHh
Confidence            9999875

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=100.00  E-value=1.2e-39  Score=367.53  Aligned_cols=218  Identities=26%  Similarity=0.387  Sum_probs=173.6

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~  103 (606)
                      ..|+++|++++|+.      +++++|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.+||++.   +.
T Consensus       338 ~~i~~~~v~~~y~~------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p-~~G~i~~~g~~~~~~~~  410 (578)
T 4a82_A          338 GRIDIDHVSFQYND------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV-TSGQILIDGHNIKDFLT  410 (578)
T ss_dssp             CCEEEEEEEECSCS------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC-SEEEEEETTEEGGGSCH
T ss_pred             CeEEEEEEEEEcCC------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC-CCcEEEECCEEhhhCCH
Confidence            46999999998742      346799999999999999999999999999999999999887 599999999864   34


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHH----HHHHHhcCCcc--cccCCCCCCCCc
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLS----IALELINNPRV--MFLDEPTTSNPN  177 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~----ia~~L~~~~~~--~~~de~~~~~s~  177 (606)
                      ..+|+.++||+|++.+++. |+.|.+.. |...        .+..+..+..    +...+..-|+=  -..+|....|||
T Consensus       411 ~~~r~~i~~v~Q~~~l~~~-tv~eni~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSg  480 (578)
T 4a82_A          411 GSLRNQIGLVQQDNILFSD-TVKENILL-GRPT--------ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSG  480 (578)
T ss_dssp             HHHHHTEEEECSSCCCCSS-BHHHHHGG-GCSS--------CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCH
T ss_pred             HHHhhheEEEeCCCccCcc-cHHHHHhc-CCCC--------CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCH
Confidence            5678899999999999986 88766543 2111        1111111111    11111122221  144666778999


Q ss_pred             hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      |||||++|||||+++|++|+|||||||||+.++..+.+.++++. +|+|+|+++|+++. + +.||++++|++|++++.|
T Consensus       481 Gq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~i~~~g  557 (578)
T 4a82_A          481 GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST-I-THADKIVVIENGHIVETG  557 (578)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEEC
Confidence            99999999999999999999999999999999999999999885 47999999999875 4 679999999999999999


Q ss_pred             ChhHHHH
Q psy13765        258 ATDQLVN  264 (606)
Q Consensus       258 ~~~~~~~  264 (606)
                      +++|+.+
T Consensus       558 ~~~el~~  564 (578)
T 4a82_A          558 THRELIA  564 (578)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHh
Confidence            9999865

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=100.00  E-value=1.6e-39  Score=366.88  Aligned_cols=215  Identities=22%  Similarity=0.411  Sum_probs=175.4

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~  104 (606)
                      .|+++||+++|+.      +++++|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.+||++..   ..
T Consensus       341 ~i~~~~v~~~y~~------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p-~~G~i~~~g~~~~~~~~~  413 (582)
T 3b60_A          341 DLEFRNVTFTYPG------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI-DEGHILMDGHDLREYTLA  413 (582)
T ss_dssp             CEEEEEEEECSSS------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC-SEEEEEETTEETTTBCHH
T ss_pred             cEEEEEEEEEcCC------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC-CCCeEEECCEEccccCHH
Confidence            5999999998731      125799999999999999999999999999999999999877 5999999998753   35


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHH-------hcCCc-c-cccCCCCCCC
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALEL-------INNPR-V-MFLDEPTTSN  175 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L-------~~~~~-~-~~~de~~~~~  175 (606)
                      .+|+.++||+|++.+++. |+.|.+.. +...       +.+.   +++.-+.+.       -..|+ + -..+|....|
T Consensus       414 ~~~~~i~~v~Q~~~l~~~-tv~eni~~-~~~~-------~~~~---~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~L  481 (582)
T 3b60_A          414 SLRNQVALVSQNVHLFND-TVANNIAY-ARTE-------EYSR---EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLL  481 (582)
T ss_dssp             HHHHTEEEECSSCCCCSS-BHHHHHHT-TTTS-------CCCH---HHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSS
T ss_pred             HHHhhCeEEccCCcCCCC-CHHHHHhc-cCCC-------CCCH---HHHHHHHHHcCCHHHHHhccccccccccCCCCCC
Confidence            677889999999999885 99777654 2210       1121   222211111       11121 1 1457788899


Q ss_pred             CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765        176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY  255 (606)
Q Consensus       176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~  255 (606)
                      |||||||++|||||+++|++|+|||||||||+.++..+.+.|+++++ |+|+|+++|+++. + +.||++++|++|++++
T Consensus       482 SgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i~~  558 (582)
T 3b60_A          482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST-I-EQADEIVVVEDGIIVE  558 (582)
T ss_dssp             CHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG-T-TTCSEEEEEETTEEEE
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH-H-HhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999999975 9999999999874 4 6799999999999999


Q ss_pred             EcChhHHHH
Q psy13765        256 QGATDQLVN  264 (606)
Q Consensus       256 ~G~~~~~~~  264 (606)
                      .|+++++.+
T Consensus       559 ~g~~~~l~~  567 (582)
T 3b60_A          559 RGTHSELLA  567 (582)
T ss_dssp             EECHHHHHH
T ss_pred             ecCHHHHHH
Confidence            999998865

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=100.00  E-value=1.1e-39  Score=368.08  Aligned_cols=216  Identities=25%  Similarity=0.428  Sum_probs=174.6

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~  103 (606)
                      -.|+++||+++|+.      +++++|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.+||++.   +.
T Consensus       340 ~~i~~~~v~~~y~~------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p-~~G~i~~~g~~~~~~~~  412 (582)
T 3b5x_A          340 GEVDVKDVTFTYQG------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV-DSGSICLDGHDVRDYKL  412 (582)
T ss_pred             CeEEEEEEEEEcCC------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCCEEEECCEEhhhCCH
Confidence            36999999999842      225799999999999999999999999999999999999877 599999999865   34


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHH------h-cCCc-c-cccCCCCCC
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALEL------I-NNPR-V-MFLDEPTTS  174 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L------~-~~~~-~-~~~de~~~~  174 (606)
                      ..+|+.++||+|++.+++. |+.|.+.. +...       +.+.   +++.-+.+.      + ..|+ + -..+|....
T Consensus       413 ~~~~~~i~~v~Q~~~l~~~-tv~eni~~-~~~~-------~~~~---~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~  480 (582)
T 3b5x_A          413 TNLRRHFALVSQNVHLFND-TIANNIAY-AAEG-------EYTR---EQIEQAARQAHAMEFIENMPQGLDTVIGENGTS  480 (582)
T ss_pred             HHHhcCeEEEcCCCccccc-cHHHHHhc-cCCC-------CCCH---HHHHHHHHHCCCHHHHHhCcccccchhcCCCCc
Confidence            5678899999999999875 88776653 2200       1121   222211111      1 1121 1 134677789


Q ss_pred             CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765        175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL  254 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~  254 (606)
                      ||||||||++|||||+++|++|+|||||||||+.++..+.+.|+++++ |+|+|+++|+++. + +.||++++|++|+++
T Consensus       481 LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i~  557 (582)
T 3b5x_A          481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLST-I-EQADEILVVDEGEII  557 (582)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH-H-HhCCEEEEEECCEEE
Confidence            999999999999999999999999999999999999999999999865 9999999999863 4 579999999999999


Q ss_pred             EEcChhHHHH
Q psy13765        255 YQGATDQLVN  264 (606)
Q Consensus       255 ~~G~~~~~~~  264 (606)
                      +.|+++++.+
T Consensus       558 ~~g~~~~l~~  567 (582)
T 3b5x_A          558 ERGRHADLLA  567 (582)
T ss_pred             EECCHHHHHh
Confidence            9999998864

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=1.2e-39  Score=368.68  Aligned_cols=217  Identities=23%  Similarity=0.385  Sum_probs=170.0

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~  103 (606)
                      -.|+++||+++|+       +++++|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.+||++.   +.
T Consensus       353 ~~i~~~~v~~~y~-------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p-~~G~i~~~g~~i~~~~~  424 (598)
T 3qf4_B          353 GEIEFKNVWFSYD-------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV-DRGQILVDGIDIRKIKR  424 (598)
T ss_dssp             CCEEEEEEECCSS-------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC-SEEEEEETTEEGGGSCH
T ss_pred             CeEEEEEEEEECC-------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC-CCeEEEECCEEhhhCCH
Confidence            3699999999873       235799999999999999999999999999999999999887 599999999864   34


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHH----HHHHHhcCCcc--cccCCCCCCCCc
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLS----IALELINNPRV--MFLDEPTTSNPN  177 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~----ia~~L~~~~~~--~~~de~~~~~s~  177 (606)
                      ..+|+.++||+|++.+++. |+.+.+.. |....        +..+.+++.    +...+-..|+=  -..+|....|||
T Consensus       425 ~~~r~~i~~v~Q~~~lf~~-tv~eni~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSg  494 (598)
T 3qf4_B          425 SSLRSSIGIVLQDTILFST-TVKENLKY-GNPGA--------TDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQ  494 (598)
T ss_dssp             HHHHHHEEEECTTCCCCSS-BHHHHHHS-SSTTC--------CTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCH
T ss_pred             HHHHhceEEEeCCCccccc-cHHHHHhc-CCCCC--------CHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCH
Confidence            5678899999999999875 88766543 21111        111111110    00001111110  123344467888


Q ss_pred             hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      |||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +|+|+|+++|+++. + +.||++++|++|++++.|
T Consensus       495 Gq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~i~~~g  571 (598)
T 3qf4_B          495 GQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLRDGEIVEMG  571 (598)
T ss_dssp             HHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEECSSSEEECS
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEEC
Confidence            88888888888888999999999999999999999999999986 58999999999884 4 569999999999999999


Q ss_pred             ChhHHHH
Q psy13765        258 ATDQLVN  264 (606)
Q Consensus       258 ~~~~~~~  264 (606)
                      +++++.+
T Consensus       572 ~~~~l~~  578 (598)
T 3qf4_B          572 KHDELIQ  578 (598)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHh
Confidence            9999875

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=100.00  E-value=2.1e-38  Score=327.45  Aligned_cols=202  Identities=22%  Similarity=0.332  Sum_probs=149.2

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF  106 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~  106 (606)
                      ..|+++||++.          .+.+|+|+|++|++||+++|+||||||||||+|+|+|+.++ .+|+|.++|        
T Consensus        39 ~~l~~~~l~~~----------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p-~~G~I~~~g--------   99 (290)
T 2bbs_A           39 DSLSFSNFSLL----------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSG--------   99 (290)
T ss_dssp             ---------------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE-EEEEEECCS--------
T ss_pred             ceEEEEEEEEc----------CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEECC--------
Confidence            35899999974          14699999999999999999999999999999999999876 599999998        


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHH----HHHHHHhcCCcc--cccCCCCCCCCchhh
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL----SIALELINNPRV--MFLDEPTTSNPNDQK  180 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv----~ia~~L~~~~~~--~~~de~~~~~s~g~~  180 (606)
                        .++||+|++.+++. |+.+.+.  +...         .....+++    .+...+-..|..  ..++++...||||||
T Consensus       100 --~i~~v~Q~~~l~~~-tv~enl~--~~~~---------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~  165 (290)
T 2bbs_A          100 --RISFCSQNSWIMPG-TIKENII--GVSY---------DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQR  165 (290)
T ss_dssp             --CEEEECSSCCCCSS-BHHHHHH--TTCC---------CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHH
T ss_pred             --EEEEEeCCCccCcc-cHHHHhh--Cccc---------chHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHH
Confidence              38999999998885 9977766  4311         11111111    111111111111  134566789999999


Q ss_pred             hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765        181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL-KMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT  259 (606)
Q Consensus       181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l-~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~  259 (606)
                      ||+.|||||+.+|++|+|||||+|||+.++..+.+.+ ++++ +|+|||++||++. .+ ..||++++|++|++++.|++
T Consensus       166 QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~-~~-~~~d~i~~l~~G~i~~~g~~  242 (290)
T 2bbs_A          166 ARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTF  242 (290)
T ss_dssp             HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECH
T ss_pred             HHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH-HH-HcCCEEEEEECCeEEEeCCH
Confidence            9999999999999999999999999999999999974 5554 4899999999975 34 56999999999999999999


Q ss_pred             hHHHH
Q psy13765        260 DQLVN  264 (606)
Q Consensus       260 ~~~~~  264 (606)
                      +++.+
T Consensus       243 ~~l~~  247 (290)
T 2bbs_A          243 SELQN  247 (290)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            88753

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=6.6e-38  Score=381.87  Aligned_cols=221  Identities=26%  Similarity=0.398  Sum_probs=168.8

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~  103 (606)
                      -.|+++||+|+|+.+     .++++|+|||++|+|||.+||+||||||||||+++|.|++.| .+|+|.+||.++   +.
T Consensus      1075 g~I~f~nVsf~Y~~~-----~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-~~G~I~iDG~di~~i~~ 1148 (1321)
T 4f4c_A         1075 GKVIFKNVRFAYPER-----PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT-LGGEIFIDGSEIKTLNP 1148 (1321)
T ss_dssp             CCEEEEEEEECCTTS-----CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC-SSSEEEETTEETTTBCH
T ss_pred             CeEEEEEEEEeCCCC-----CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccC-CCCEEEECCEEhhhCCH
Confidence            369999999998642     345799999999999999999999999999999999999887 599999999865   45


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHH----HHHHhcCCccc--ccCCCCCCCCc
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSI----ALELINNPRVM--FLDEPTTSNPN  177 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~i----a~~L~~~~~~~--~~de~~~~~s~  177 (606)
                      +.+|++++|||||+.+|+. |+.+.+. +|+++      .+.|-.|-.+++-    ..-+..-|+=+  ...|....+||
T Consensus      1149 ~~lR~~i~~V~Qdp~LF~g-TIreNI~-~gld~------~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSg 1220 (1321)
T 4f4c_A         1149 EHTRSQIAIVSQEPTLFDC-SIAENII-YGLDP------SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSG 1220 (1321)
T ss_dssp             HHHHTTEEEECSSCCCCSE-EHHHHHS-SSSCT------TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCH
T ss_pred             HHHHhheEEECCCCEeeCc-cHHHHHh-ccCCC------CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCH
Confidence            7889999999999999875 5543321 23221      1122222211110    00011112111  22344555666


Q ss_pred             hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      |||||++|||||+++|+||+||||||+||+.+...|.+.|+++. +|+|+|+++|+++. + ..||+|++|++|++++.|
T Consensus      1221 GQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT-i-~~aD~I~Vld~G~IvE~G 1297 (1321)
T 4f4c_A         1221 GQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT-V-MNADCIAVVSNGTIIEKG 1297 (1321)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST-T-TTCSEEEEESSSSEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH-H-HhCCEEEEEECCEEEEEC
Confidence            77777777777777799999999999999999999999998764 48999999999985 3 789999999999999999


Q ss_pred             ChhHHHH
Q psy13765        258 ATDQLVN  264 (606)
Q Consensus       258 ~~~~~~~  264 (606)
                      +++|+++
T Consensus      1298 th~eLl~ 1304 (1321)
T 4f4c_A         1298 THTQLMS 1304 (1321)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHh
Confidence            9999986

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=6.4e-37  Score=373.20  Aligned_cols=216  Identities=27%  Similarity=0.434  Sum_probs=170.6

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~  103 (606)
                      -.|+++|++|+|+..     .++++|+|+|++|++||.+||+||||||||||+++|.|++++ .+|+|.+||.+.   +.
T Consensus       414 g~I~~~nvsF~Y~~~-----~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~-~~G~I~idG~~i~~~~~  487 (1321)
T 4f4c_A          414 GDITVENVHFTYPSR-----PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV-LKGKITIDGVDVRDINL  487 (1321)
T ss_dssp             CCEEEEEEEECCSSS-----TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC-SEEEEEETTEETTTSCH
T ss_pred             CcEEEEEeeeeCCCC-----CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc-ccCcccCCCccchhccH
Confidence            369999999998632     356899999999999999999999999999999999999887 599999999864   45


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhc-------CCc--ccccCCCCCC
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELIN-------NPR--VMFLDEPTTS  174 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~-------~~~--~~~~de~~~~  174 (606)
                      +.+|+.++||+|++.++.. |+.|.+. +|.++        .+   .+++.-|..++.       -|+  --...|....
T Consensus       488 ~~lr~~i~~v~Q~~~Lf~~-TI~eNI~-~g~~~--------~~---~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~  554 (1321)
T 4f4c_A          488 EFLRKNVAVVSQEPALFNC-TIEENIS-LGKEG--------IT---REEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQ  554 (1321)
T ss_dssp             HHHHHHEEEECSSCCCCSE-EHHHHHH-TTCTT--------CC---HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCC
T ss_pred             HHHhhcccccCCcceeeCC-chhHHHh-hhccc--------ch---HHHHHHHHHHccchhHHHcCCCCCccEecCCCCC
Confidence            7789999999999999875 5544332 23211        11   122222222221       111  1133455566


Q ss_pred             CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765        175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL  254 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~  254 (606)
                      ||||||||++||||+++||+||+||||||+||+.+...+.+.|+++.+ |+|+|+++|+++.  .+.||+|++|++|+++
T Consensus       555 LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls~--i~~aD~Iivl~~G~iv  631 (1321)
T 4f4c_A          555 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLST--IRNADLIISCKNGQVV  631 (1321)
T ss_dssp             CCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTTT--TTTCSEEEEEETTEEE
T ss_pred             CCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHHH--HHhCCEEEEeeCCeee
Confidence            777777777777778888999999999999999999999999998764 8999999999884  4889999999999999


Q ss_pred             EEcChhHHHH
Q psy13765        255 YQGATDQLVN  264 (606)
Q Consensus       255 ~~G~~~~~~~  264 (606)
                      +.|+++|+.+
T Consensus       632 e~Gth~eL~~  641 (1321)
T 4f4c_A          632 EVGDHRALMA  641 (1321)
T ss_dssp             EEECHHHHHT
T ss_pred             ccCCHHHHHH
Confidence            9999999874

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=2e-36  Score=367.99  Aligned_cols=219  Identities=25%  Similarity=0.424  Sum_probs=174.6

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~  103 (606)
                      -.|+++||+|+|+.+     .++++|+|||+++++||++||+||||||||||+++|+|+.++ .+|+|.+||++.   +.
T Consensus       386 g~i~~~~v~~~y~~~-----~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~-~~G~i~i~g~~i~~~~~  459 (1284)
T 3g5u_A          386 GNLEFKNIHFSYPSR-----KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP-LDGMVSIDGQDIRTINV  459 (1284)
T ss_dssp             CCEEEEEEEECCSST-----TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCC-SEEEEEETTEEGGGSCH
T ss_pred             CeEEEEEEEEEcCCC-----CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEHHhCCH
Confidence            369999999998532     235799999999999999999999999999999999999887 599999999764   45


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHH-HH--HH-HhcCCcc--cccCCCCCCCCc
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLS-IA--LE-LINNPRV--MFLDEPTTSNPN  177 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~-ia--~~-L~~~~~~--~~~de~~~~~s~  177 (606)
                      ..+|+.+|||+|++.+++. |+.+.+.. |..+        .+..+..+.. .+  .+ +..-|+=  -..+|....|||
T Consensus       460 ~~~r~~i~~v~Q~~~l~~~-ti~eNi~~-g~~~--------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg  529 (1284)
T 3g5u_A          460 RYLREIIGVVSQEPVLFAT-TIAENIRY-GRED--------VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSG  529 (1284)
T ss_dssp             HHHHHHEEEECSSCCCCSS-CHHHHHHH-HCSS--------CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCH
T ss_pred             HHHHhheEEEcCCCccCCc-cHHHHHhc-CCCC--------CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCH
Confidence            6778899999999999986 88665543 2111        1222222211 10  11 1112221  135677788999


Q ss_pred             hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      |||||++|||||+++|+||+||||||+||+.+...+.+.++++. +|+|+|+++|+++. + ..||+|++|++|++++.|
T Consensus       530 Gq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-i-~~~d~i~vl~~G~i~~~g  606 (1284)
T 3g5u_A          530 GQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLST-V-RNADVIAGFDGGVIVEQG  606 (1284)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHH-H-TTCSEEEECSSSCCCCEE
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEEC
Confidence            99999999999999999999999999999999999999998875 48999999999873 4 569999999999999999


Q ss_pred             ChhHHHH
Q psy13765        258 ATDQLVN  264 (606)
Q Consensus       258 ~~~~~~~  264 (606)
                      +++++.+
T Consensus       607 ~~~~l~~  613 (1284)
T 3g5u_A          607 NHDELMR  613 (1284)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHh
Confidence            9999875

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=4.8e-36  Score=364.64  Aligned_cols=221  Identities=24%  Similarity=0.385  Sum_probs=175.3

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---h
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---I  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~  103 (606)
                      -.|+++||+++|+.+     .++++|+|+|++|++||++||+||||||||||+++|+|+.++ .+|+|.+||++..   .
T Consensus      1029 g~i~~~~v~~~y~~~-----~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p-~~G~I~i~g~~i~~~~~ 1102 (1284)
T 3g5u_A         1029 GNVQFSGVVFNYPTR-----PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP-MAGSVFLDGKEIKQLNV 1102 (1284)
T ss_dssp             CCEEEEEEEBCCSCG-----GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC-SEEEEESSSSCTTSSCH
T ss_pred             CcEEEEEEEEECCCC-----CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCCEEEECCEEcccCCH
Confidence            369999999998531     235799999999999999999999999999999999999887 5999999998753   4


Q ss_pred             hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHH---HHHHhc-CCccc--ccCCCCCCCCc
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSI---ALELIN-NPRVM--FLDEPTTSNPN  177 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~i---a~~L~~-~~~~~--~~de~~~~~s~  177 (606)
                      +.+|+.++||||++.+++ .|+.+.+.. +..      ....+..+..+..-   +...+. .|+=+  ..+|....|||
T Consensus      1103 ~~~r~~i~~v~Q~~~l~~-~ti~eNi~~-~~~------~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSg 1174 (1284)
T 3g5u_A         1103 QWLRAQLGIVSQEPILFD-CSIAENIAY-GDN------SRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSG 1174 (1284)
T ss_dssp             HHHTTSCEEEESSCCCCS-SBHHHHHTC-CCS------SCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCH
T ss_pred             HHHHhceEEECCCCcccc-ccHHHHHhc-cCC------CCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCH
Confidence            567889999999998875 588665532 111      01123333222211   112222 22211  34567778999


Q ss_pred             hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      ||||||.|||||+++|+||+|||||+|||+.+...+.+.|+++ .+|+|+|+++|+++. + +.||||++|++|++++.|
T Consensus      1175 Gq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~~G~i~~~g 1251 (1284)
T 3g5u_A         1175 GQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQNGKVKEHG 1251 (1284)
T ss_dssp             HHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEETBEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEEC
Confidence            9999999999999999999999999999999999999999885 458999999999885 5 669999999999999999


Q ss_pred             ChhHHHH
Q psy13765        258 ATDQLVN  264 (606)
Q Consensus       258 ~~~~~~~  264 (606)
                      +++++.+
T Consensus      1252 ~~~~l~~ 1258 (1284)
T 3g5u_A         1252 THQQLLA 1258 (1284)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHh
Confidence            9999875

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=3.7e-35  Score=331.28  Aligned_cols=206  Identities=17%  Similarity=0.239  Sum_probs=165.7

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhh
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA  105 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~  105 (606)
                      ...++++|+++.|.        + ..|+++|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.+         
T Consensus       355 ~~~l~~~~l~~~~~--------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p-~~G~I~~---------  415 (607)
T 3bk7_A          355 ETLVEYPRLVKDYG--------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP-TEGKVEW---------  415 (607)
T ss_dssp             CEEEEECCEEEECS--------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC-SBSCCCC---------
T ss_pred             ceEEEEeceEEEec--------c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEE---------
Confidence            45799999998752        2 368999999999999999999999999999999999876 5899875         


Q ss_pred             hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI  185 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I  185 (606)
                       ++.++|++|+....+.+||.+.+.......        .  ..++++.-+.+.+.-.  -..|.+...|||||||||.|
T Consensus       416 -~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~--------~--~~~~~~~~~l~~~~l~--~~~~~~~~~LSGGe~QRv~i  482 (607)
T 3bk7_A          416 -DLTVAYKPQYIKAEYEGTVYELLSKIDSSK--------L--NSNFYKTELLKPLGII--DLYDRNVEDLSGGELQRVAI  482 (607)
T ss_dssp             -CCCEEEECSSCCCCCSSBHHHHHHHHHHHH--------H--HCHHHHHHTHHHHTCT--TTTTSBGGGCCHHHHHHHHH
T ss_pred             -eeEEEEEecCccCCCCCcHHHHHHhhhccC--------C--CHHHHHHHHHHHcCCc--hHhcCChhhCCHHHHHHHHH
Confidence             246999999988888899977664320000        0  1123332222222211  15678888889999999999


Q ss_pred             HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecC--CcEEEEcChhHH
Q psy13765        186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSG--GQCLYQGATDQL  262 (606)
Q Consensus       186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~--G~~~~~G~~~~~  262 (606)
                      |+||+.+|++|+|||||+|||+.++..+.++|+++++ +|.|||+++||+. .+..+|||+++|++  |+++..|+++++
T Consensus       483 AraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~~  561 (607)
T 3bk7_A          483 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMGM  561 (607)
T ss_dssp             HHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred             HHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHHHH
Confidence            9999999999999999999999999999999999975 6999999999976 57789999999986  888899999887


Q ss_pred             HH
Q psy13765        263 VN  264 (606)
Q Consensus       263 ~~  264 (606)
                      .+
T Consensus       562 ~~  563 (607)
T 3bk7_A          562 RE  563 (607)
T ss_dssp             HH
T ss_pred             Hh
Confidence            65

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=3.2e-35  Score=328.15  Aligned_cols=205  Identities=18%  Similarity=0.273  Sum_probs=166.9

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhh
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA  105 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~  105 (606)
                      ...++++|+++.|.        + ..|+++|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.+         
T Consensus       285 ~~~l~~~~l~~~~~--------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p-~~G~i~~---------  345 (538)
T 1yqt_A          285 ETLVTYPRLVKDYG--------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP-TEGKIEW---------  345 (538)
T ss_dssp             CEEEEECCEEEEET--------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC-SBCCCCC---------
T ss_pred             CeEEEEeeEEEEEC--------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEE---------
Confidence            45799999998862        2 368999999999999999999999999999999999876 5899875         


Q ss_pred             hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHH
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLS  184 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~  184 (606)
                       ...++||+|+....+.+||.+++.......        .+  ++++   +.+++..-.+- ..|.+...|||||||||.
T Consensus       346 -~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~--------~~--~~~~---~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~  411 (538)
T 1yqt_A          346 -DLTVAYKPQYIKADYEGTVYELLSKIDASK--------LN--SNFY---KTELLKPLGIIDLYDREVNELSGGELQRVA  411 (538)
T ss_dssp             -CCCEEEECSSCCCCCSSBHHHHHHHHHHHH--------HT--CHHH---HHHTTTTTTCGGGTTSBGGGCCHHHHHHHH
T ss_pred             -CceEEEEecCCcCCCCCcHHHHHHhhhccC--------CC--HHHH---HHHHHHHcCChhhhcCChhhCCHHHHHHHH
Confidence             246999999998888899977765320000        00  1222   33444443332 567888889999999999


Q ss_pred             HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecC--CcEEEEcChhH
Q psy13765        185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSG--GQCLYQGATDQ  261 (606)
Q Consensus       185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~--G~~~~~G~~~~  261 (606)
                      ||+||+.+|++|+|||||+|||+.++..+.++|+++++ +|.|||++|||+. .+..+|||+++|++  |+++..|++++
T Consensus       412 lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~  490 (538)
T 1yqt_A          412 IAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG  490 (538)
T ss_dssp             HHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred             HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHHH
Confidence            99999999999999999999999999999999999974 5999999999976 57789999999986  88999999988


Q ss_pred             HHH
Q psy13765        262 LVN  264 (606)
Q Consensus       262 ~~~  264 (606)
                      +.+
T Consensus       491 ~~~  493 (538)
T 1yqt_A          491 MRE  493 (538)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            765

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=2.3e-34  Score=320.79  Aligned_cols=206  Identities=18%  Similarity=0.221  Sum_probs=163.3

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhh
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA  105 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~  105 (606)
                      ...++++|+++.+.        + ..|+++|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|       
T Consensus       267 ~~~l~~~~l~~~~~--------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~~-------  329 (538)
T 3ozx_A          267 KTKMKWTKIIKKLG--------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA-DEGSVTPEK-------  329 (538)
T ss_dssp             CEEEEECCEEEEET--------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-SBCCEESSC-------
T ss_pred             cceEEEcceEEEEC--------C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECC-------
Confidence            45789999998862        2 358888999999999999999999999999999999887 599998764       


Q ss_pred             hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHH
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLS  184 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~  184 (606)
                        +.++|++|+.......||.+.+...... .       ++. .+++   +.+++..-.+- ..|.++..|||||||||.
T Consensus       330 --~~i~~~~q~~~~~~~~tv~~~l~~~~~~-~-------~~~-~~~~---~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~  395 (538)
T 3ozx_A          330 --QILSYKPQRIFPNYDGTVQQYLENASKD-A-------LST-SSWF---FEEVTKRLNLHRLLESNVNDLSGGELQKLY  395 (538)
T ss_dssp             --CCEEEECSSCCCCCSSBHHHHHHHHCSS-T-------TCT-TSHH---HHHTTTTTTGGGCTTSBGGGCCHHHHHHHH
T ss_pred             --eeeEeechhcccccCCCHHHHHHHhhhh-c-------cch-hHHH---HHHHHHHcCCHHHhcCChhhCCHHHHHHHH
Confidence              3589999998777788987776653111 0       000 1111   23334333332 567888888888888888


Q ss_pred             HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecC--CcEEEEcChhH
Q psy13765        185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSG--GQCLYQGATDQ  261 (606)
Q Consensus       185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~--G~~~~~G~~~~  261 (606)
                      ||+||+.+|++|||||||+|||+.++.++.++|+++++ .|.|||++|||+. .+..+||||++|++  |.....+++.+
T Consensus       396 iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~  474 (538)
T 3ozx_A          396 IAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVT  474 (538)
T ss_dssp             HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred             HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChHH
Confidence            99999999999999999999999999999999999976 5999999999976 57789999999986  66777777655


Q ss_pred             HH
Q psy13765        262 LV  263 (606)
Q Consensus       262 ~~  263 (606)
                      +.
T Consensus       475 ~~  476 (538)
T 3ozx_A          475 LK  476 (538)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.5e-34  Score=319.42  Aligned_cols=202  Identities=17%  Similarity=0.219  Sum_probs=153.3

Q ss_pred             EeeEEEEecCCcccccccccceeeeEEEeCC-----eEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765         32 KDLTYTVSTGLGFKQEPKDVLKNLCGRFPSN-----QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF  106 (606)
Q Consensus        32 ~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~G-----e~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~  106 (606)
                      ++++++|+       ..+.+++|+|+++++|     |+++|+||||||||||+++|+|+.++ .+|+.      ..    
T Consensus       350 ~~~~~~y~-------~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p-~~G~~------~~----  411 (608)
T 3j16_B          350 ASRAFSYP-------SLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP-DEGQD------IP----  411 (608)
T ss_dssp             SSSCCEEC-------CEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC-SBCCC------CC----
T ss_pred             cceeEEec-------CcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC-CCCcC------cc----
Confidence            55666653       2245789999999998     78999999999999999999999877 47752      11    


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHH
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIA  186 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA  186 (606)
                      +..++|++|+.......|+.+.+.. .+.   .    ....  ++++.-+.+.+.-.  -..|.++..|||||||||.||
T Consensus       412 ~~~i~~~~q~~~~~~~~tv~e~~~~-~~~---~----~~~~--~~~~~~~l~~l~l~--~~~~~~~~~LSGGqkQRv~iA  479 (608)
T 3j16_B          412 KLNVSMKPQKIAPKFPGTVRQLFFK-KIR---G----QFLN--PQFQTDVVKPLRID--DIIDQEVQHLSGGELQRVAIV  479 (608)
T ss_dssp             SCCEEEECSSCCCCCCSBHHHHHHH-HCS---S----TTTS--HHHHHHTHHHHTST--TTSSSBSSSCCHHHHHHHHHH
T ss_pred             CCcEEEecccccccCCccHHHHHHH-Hhh---c----cccc--HHHHHHHHHHcCCh--hhhcCChhhCCHHHHHHHHHH
Confidence            3468999999776666788665432 110   0    0101  11221111111111  146778888888888888889


Q ss_pred             HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecC--CcEEEEcChhHHH
Q psy13765        187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSG--GQCLYQGATDQLV  263 (606)
Q Consensus       187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~--G~~~~~G~~~~~~  263 (606)
                      +||+.+|++|+|||||+|||+.++..++++|+++++ +|+|||++|||+. .+..+|||+++|++  |+++..|+|+++.
T Consensus       480 raL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~  558 (608)
T 3j16_B          480 LALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLL  558 (608)
T ss_dssp             HHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHH
T ss_pred             HHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHh
Confidence            999999999999999999999999999999999864 5999999999976 57789999999986  9999999998887


Q ss_pred             H
Q psy13765        264 N  264 (606)
Q Consensus       264 ~  264 (606)
                      +
T Consensus       559 ~  559 (608)
T 3j16_B          559 T  559 (608)
T ss_dssp             H
T ss_pred             h
Confidence            5

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=3.6e-34  Score=323.18  Aligned_cols=180  Identities=22%  Similarity=0.311  Sum_probs=142.9

Q ss_pred             EeeEEEEecCCccccccc-ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEE---------EECCccC
Q psy13765         32 KDLTYTVSTGLGFKQEPK-DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQI---------LTNGHSR  101 (606)
Q Consensus        32 ~nl~~~~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I---------~~~G~~~  101 (606)
                      +||+++|        +++ .+|+|+| ++++||+++|+||||||||||||+|+|+.+| .+|++         .++|.+.
T Consensus        95 ~~ls~~y--------g~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p-~~G~~~~~~~~~~~~~~G~~~  164 (607)
T 3bk7_A           95 EDCVHRY--------GVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIP-NLCEDNDSWDNVIRAFRGNEL  164 (607)
T ss_dssp             GSEEEEC--------STTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCC-CTTTTCCCHHHHHHHTTTSTH
T ss_pred             CCeEEEE--------CCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCC-CCCccccccchhhheeCCEeh
Confidence            6677665        333 4899999 9999999999999999999999999999876 47885         4566543


Q ss_pred             Ch---h--hhcccEEEEccCCCCCCC---Cc-------------HHHHHHHcCCccccCCccccCChHHHHHHHHHHHHh
Q psy13765        102 NI---N--AFRRVSCYIQQDDRLQPL---LT-------------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELI  160 (606)
Q Consensus       102 ~~---~--~~~~~~~yv~Q~~~l~~~---lt-------------v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~  160 (606)
                      ..   .  ..+..+++++|.....+.   .|             ++++++.+||.+..++.+++|||||||||+||++|+
T Consensus       165 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~  244 (607)
T 3bk7_A          165 QNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALL  244 (607)
T ss_dssp             HHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHh
Confidence            21   0  113457888887433221   13             456677788888788888888888888888666666


Q ss_pred             cCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh
Q psy13765        161 NNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQ  240 (606)
Q Consensus       161 ~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~  240 (606)
                      .+                              |++|||||||+|||+.++..+.++|++++++|.|||+++||+. .+..
T Consensus       245 ~~------------------------------P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~  293 (607)
T 3bk7_A          245 RK------------------------------AHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDY  293 (607)
T ss_dssp             SC------------------------------CSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHH
T ss_pred             cC------------------------------CCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHh
Confidence            65                              9999999999999999999999999999888999999999976 5778


Q ss_pred             hcceeeeecCCc
Q psy13765        241 MFDQVYLLSGGQ  252 (606)
Q Consensus       241 ~~D~v~~L~~G~  252 (606)
                      +||++++|+++.
T Consensus       294 ~adri~vl~~~~  305 (607)
T 3bk7_A          294 LSDVIHVVYGEP  305 (607)
T ss_dssp             HCSEEEEEESCT
T ss_pred             hCCEEEEECCCc
Confidence            999999998654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=7.9e-34  Score=316.94  Aligned_cols=184  Identities=23%  Similarity=0.304  Sum_probs=143.4

Q ss_pred             EEEE-EeeEEEEecCCccccccc-ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEE---------EE
Q psy13765         28 EIKF-KDLTYTVSTGLGFKQEPK-DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQI---------LT   96 (606)
Q Consensus        28 ~l~~-~nl~~~~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I---------~~   96 (606)
                      ..++ +||+++|        +++ .+|+|+| ++++||+++|+||||||||||+|+|+|+.+| .+|++         .+
T Consensus        20 ~~~~~~~ls~~y--------g~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p-~~G~~~~~~~~~~~~~   89 (538)
T 1yqt_A           20 MEQLEEDCVHRY--------GVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIP-NLCGDNDSWDGVIRAF   89 (538)
T ss_dssp             ----CCCEEEEC--------STTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC-CTTTTCCSHHHHHHHT
T ss_pred             ChhHhcCcEEEE--------CCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCccCcchhhhHHhh
Confidence            3455 5888876        223 4899999 9999999999999999999999999999876 47885         35


Q ss_pred             CCccCCh---h--hhcccEEEEccCCCCCCC---Cc-------------HHHHHHHcCCccccCCccccCChHHHHHHHH
Q psy13765         97 NGHSRNI---N--AFRRVSCYIQQDDRLQPL---LT-------------IENVMSLLGLDESQNTRSSQLSGGQKKRLSI  155 (606)
Q Consensus        97 ~G~~~~~---~--~~~~~~~yv~Q~~~l~~~---lt-------------v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~i  155 (606)
                      +|.+...   .  ..+..+++++|+....+.   .|             ++++++.+|+.+..++++.+|||||||||+|
T Consensus        90 ~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~i  169 (538)
T 1yqt_A           90 RGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAI  169 (538)
T ss_dssp             TTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHH
Confidence            6654321   1  112457899987544332   13             3566777788777788888888888888886


Q ss_pred             HHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765        156 ALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS  235 (606)
Q Consensus       156 a~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~  235 (606)
                      |++|+.+                              |++|+|||||+|||+.++..+.++|++++++|.|||+++||+.
T Consensus       170 AraL~~~------------------------------P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~  219 (538)
T 1yqt_A          170 AAALLRN------------------------------ATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA  219 (538)
T ss_dssp             HHHHHSC------------------------------CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             HHHHhcC------------------------------CCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            6666655                              9999999999999999999999999999888999999999976


Q ss_pred             hHHHhhcceeeeecCCc
Q psy13765        236 ATLFQMFDQVYLLSGGQ  252 (606)
Q Consensus       236 ~~i~~~~D~v~~L~~G~  252 (606)
                       .+.++||++++|++|.
T Consensus       220 -~~~~~~dri~vl~~~~  235 (538)
T 1yqt_A          220 -VLDYLSDIIHVVYGEP  235 (538)
T ss_dssp             -HHHHHCSEEEEEEEET
T ss_pred             -HHHHhCCEEEEEcCcc
Confidence             5778999999998654

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=2.8e-33  Score=320.84  Aligned_cols=209  Identities=21%  Similarity=0.360  Sum_probs=133.6

Q ss_pred             ccccceeeeEEEeCCeEEEEECCCCCCHHHHH---------------------HHHhCCCCCC------CccEEEECCcc
Q psy13765         48 PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL---------------------DVLSGYRSNG------VTGQILTNGHS  100 (606)
Q Consensus        48 ~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL---------------------~~L~g~~~~~------~~G~I~~~G~~  100 (606)
                      .+.+|+|||++|++||+++|+||||||||||+                     +++.|+..+.      ..|.|.++|.+
T Consensus        30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~  109 (670)
T 3ux8_A           30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT  109 (670)
T ss_dssp             CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred             CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence            45799999999999999999999999999998                     7777776553      14667777754


Q ss_pred             CChhhhcccEEEEccCCCCC-------------------CCCcHHHHHHHc-CCcccc-CCccccCC-hHHHHHHHHHHH
Q psy13765        101 RNINAFRRVSCYIQQDDRLQ-------------------PLLTIENVMSLL-GLDESQ-NTRSSQLS-GGQKKRLSIALE  158 (606)
Q Consensus       101 ~~~~~~~~~~~yv~Q~~~l~-------------------~~ltv~~~l~~~-gl~~~~-~~~~~~lS-gGqrqRv~ia~~  158 (606)
                      .. ...++.+++|+|...++                   +.+|+.+.+... ++.... +......- .--.+++.    
T Consensus       110 ~~-~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  184 (670)
T 3ux8_A          110 TS-RNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLG----  184 (670)
T ss_dssp             ------CCBHHHHTTCC-------------------------CC--------------------------CHHHHH----
T ss_pred             hh-ccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHH----
Confidence            32 12244566666654432                   334554443321 110000 00000000 00011111    


Q ss_pred             HhcCCcc--cccCCCCCCCCchhhhHHHHHHhhhcCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy13765        159 LINNPRV--MFLDEPTTSNPNDQKKRLSIALELINNPR--VMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQP  234 (606)
Q Consensus       159 L~~~~~~--~~~de~~~~~s~g~~krl~IA~aL~~~P~--lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~  234 (606)
                      ++..-.+  ..+|.+...|||||||||+|||||+.+|+  +|||||||+|||+.++..++++|++++++|.|||++|||+
T Consensus       185 ~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~  264 (670)
T 3ux8_A          185 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE  264 (670)
T ss_dssp             HHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred             HHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            1111111  13577788888888888888888888888  9999999999999999999999999988899999999997


Q ss_pred             chHHHhhcceeeee------cCCcEEEEcChhHHH
Q psy13765        235 SATLFQMFDQVYLL------SGGQCLYQGATDQLV  263 (606)
Q Consensus       235 ~~~i~~~~D~v~~L------~~G~~~~~G~~~~~~  263 (606)
                      . .+ ..||++++|      ++|++++.|+++++.
T Consensus       265 ~-~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~  297 (670)
T 3ux8_A          265 D-TM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVM  297 (670)
T ss_dssp             H-HH-HHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred             H-HH-hhCCEEEEecccccccCCEEEEecCHHHHh
Confidence            6 34 569999999      899999999999875

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.98  E-value=6.2e-32  Score=315.58  Aligned_cols=201  Identities=20%  Similarity=0.288  Sum_probs=156.2

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhh
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA  105 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~  105 (606)
                      +..+...|++++|        +++.+|+|+|+++++||+++|+||||||||||+|+|+|       |+|  +|.+.. ..
T Consensus       433 ~~~L~~~~ls~~y--------g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-------G~i--~g~~~~-~~  494 (986)
T 2iw3_A          433 GEDLCNCEFSLAY--------GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-------GQV--DGFPTQ-EE  494 (986)
T ss_dssp             SCEEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-------TCS--TTCCCT-TT
T ss_pred             cceeEEeeEEEEE--------CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-------CCc--CCCccc-cc
Confidence            4467777999887        34679999999999999999999999999999999994       322  343321 11


Q ss_pred             hcccEEEEccCC-CCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765        106 FRRVSCYIQQDD-RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS  184 (606)
Q Consensus       106 ~~~~~~yv~Q~~-~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~  184 (606)
                        ..++|++|+. .+++.+|+.+.+.. ..        .+.    ++|+.-+.+.+.-++ -.+|.+...||||||||+.
T Consensus       495 --~~~~~v~q~~~~~~~~ltv~e~l~~-~~--------~~~----~~~v~~~L~~lgL~~-~~~~~~~~~LSGGqkQRva  558 (986)
T 2iw3_A          495 --CRTVYVEHDIDGTHSDTSVLDFVFE-SG--------VGT----KEAIKDKLIEFGFTD-EMIAMPISALSGGWKMKLA  558 (986)
T ss_dssp             --SCEEETTCCCCCCCTTSBHHHHHHT-TC--------SSC----HHHHHHHHHHTTCCH-HHHHSBGGGCCHHHHHHHH
T ss_pred             --eeEEEEcccccccccCCcHHHHHHH-hh--------cCH----HHHHHHHHHHcCCCh-hhhcCCcccCCHHHHHHHH
Confidence              2368999984 67788898776653 10        011    444443333332110 1457788889999999999


Q ss_pred             HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE-EEcChhHHH
Q psy13765        185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL-YQGATDQLV  263 (606)
Q Consensus       185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~-~~G~~~~~~  263 (606)
                      ||+||+.+|++|||||||+|||+.++..+.+.|++   +|.|||++|||.. .+.++||++++|++|+++ +.|+++++.
T Consensus       559 LArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~G~iv~~~G~~~e~~  634 (986)
T 2iw3_A          559 LARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEGLKLRKYKGNFTEFV  634 (986)
T ss_dssp             HHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred             HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEECCeeecCCCCHHHHH
Confidence            99999999999999999999999999999999987   5899999999976 577899999999999996 789998876


Q ss_pred             H
Q psy13765        264 N  264 (606)
Q Consensus       264 ~  264 (606)
                      .
T Consensus       635 ~  635 (986)
T 2iw3_A          635 K  635 (986)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.98  E-value=1.5e-32  Score=320.68  Aligned_cols=211  Identities=22%  Similarity=0.298  Sum_probs=152.6

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhh
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA  105 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~  105 (606)
                      ...|+++|++++|+      .+++++|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|.      
T Consensus       669 ~~mL~v~nLs~~Y~------g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P-~sG~I~~~~~------  735 (986)
T 2iw3_A          669 KAIVKVTNMEFQYP------GTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP-TSGEVYTHEN------  735 (986)
T ss_dssp             SEEEEEEEEEECCT------TCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCC-SEEEEEECTT------
T ss_pred             CceEEEEeeEEEeC------CCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEEcCc------
Confidence            34699999999863      1236799999999999999999999999999999999999877 5999999863      


Q ss_pred             hcccEEEEccCCCC----CCCCcHHHHHHHc---CCc-----c----c--cC--------------C-------------
Q psy13765        106 FRRVSCYIQQDDRL----QPLLTIENVMSLL---GLD-----E----S--QN--------------T-------------  140 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l----~~~ltv~~~l~~~---gl~-----~----~--~~--------------~-------------  140 (606)
                        ..++|++|++..    ....|+.+.+...   |-+     .    .  .+              +             
T Consensus       736 --~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~  813 (986)
T 2iw3_A          736 --CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKN  813 (986)
T ss_dssp             --CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETT
T ss_pred             --cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcc
Confidence              248999987532    1234665544321   100     0    0  00              0             


Q ss_pred             -------------------ccccCCh-------------H----------------------HHHHHHHHHHHhcCCccc
Q psy13765        141 -------------------RSSQLSG-------------G----------------------QKKRLSIALELINNPRVM  166 (606)
Q Consensus       141 -------------------~~~~lSg-------------G----------------------qrqRv~ia~~L~~~~~~~  166 (606)
                                         ....++.             |                      .++++   .+++..-.+-
T Consensus       814 ~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i---~~~Le~lGL~  890 (986)
T 2iw3_A          814 TYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEI---EEHCSMLGLD  890 (986)
T ss_dssp             EEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHH---HHHHHHTTCC
T ss_pred             cchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHH---HHHHHHcCCC
Confidence                               0000000             0                      01222   2233322331


Q ss_pred             --c-cCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcc
Q psy13765        167 --F-LDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFD  243 (606)
Q Consensus       167 --~-~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D  243 (606)
                        . .+.+...|||||||||.||+||+.+|++|+|||||+|||+.+...+.+.|+++   |.|||++|||++ .+.++||
T Consensus       891 ~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~v~~l~D  966 (986)
T 2iw3_A          891 PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-FTKNLTE  966 (986)
T ss_dssp             HHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-HHTTTCC
T ss_pred             chhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHH-HHHHhCC
Confidence              2 46788899999999999999999999999999999999999999998888654   679999999976 5678999


Q ss_pred             eeeeecCCcEEEEcC
Q psy13765        244 QVYLLSGGQCLYQGA  258 (606)
Q Consensus       244 ~v~~L~~G~~~~~G~  258 (606)
                      ++++|++|+++..|+
T Consensus       967 rVivL~~G~Iv~~G~  981 (986)
T 2iw3_A          967 EVWAVKDGRMTPSGH  981 (986)
T ss_dssp             EEECCBTTBCCC---
T ss_pred             EEEEEECCEEEEeCC
Confidence            999999999987774

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.97  E-value=4.2e-31  Score=302.80  Aligned_cols=95  Identities=26%  Similarity=0.464  Sum_probs=84.6

Q ss_pred             ccCCCCCCCCchhhhHHHHHHhhhcCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcc
Q psy13765        167 FLDEPTTSNPNDQKKRLSIALELINNP---RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFD  243 (606)
Q Consensus       167 ~~de~~~~~s~g~~krl~IA~aL~~~P---~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D  243 (606)
                      .+|+++..|||||||||+|||||+.+|   ++|+|||||+|||+.++.+++++|++++++|+|||+++||++ .+ +.||
T Consensus       536 ~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d  613 (670)
T 3ux8_A          536 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-VI-KTAD  613 (670)
T ss_dssp             BTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCS
T ss_pred             hccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HH-HhCC
Confidence            356777788888888888888888776   599999999999999999999999999988999999999986 34 7799


Q ss_pred             eeeee------cCCcEEEEcChhHHH
Q psy13765        244 QVYLL------SGGQCLYQGATDQLV  263 (606)
Q Consensus       244 ~v~~L------~~G~~~~~G~~~~~~  263 (606)
                      |+++|      ++|++++.|+++++.
T Consensus       614 ~i~~l~~~~g~~~G~i~~~g~~~~~~  639 (670)
T 3ux8_A          614 YIIDLGPEGGDRGGQIVAVGTPEEVA  639 (670)
T ss_dssp             EEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred             EEEEecCCcCCCCCEEEEecCHHHHH
Confidence            99999      899999999999985

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.6e-31  Score=301.30  Aligned_cols=195  Identities=21%  Similarity=0.329  Sum_probs=134.7

Q ss_pred             EEEEeeEEEEecCCcccccc-cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEE-----------E
Q psy13765         29 IKFKDLTYTVSTGLGFKQEP-KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQIL-----------T   96 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~-----------~   96 (606)
                      |++.||...+..+.+++++. ...|++++ .+++||+++|+||||||||||||+|+|+.+| .+|+|.           +
T Consensus        70 i~i~nl~~~~~~~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P-~~G~i~~~~~~~~~~~~~  147 (608)
T 3j16_B           70 IQIINLPTNLEAHVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKP-NLGRFDDPPEWQEIIKYF  147 (608)
T ss_dssp             EEEEEESSSSSTTEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC-CTTTTCCSSCHHHHHHHT
T ss_pred             eEEecCChhhcCCeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCC-CCceEecccchhhhhhee
Confidence            55555543332222222232 34677777 6899999999999999999999999999887 489872           3


Q ss_pred             CCccCCh---hhhcccE--EEEccCCCCC------CCCc---------------HHHHHHHcCCccccCCccccCChHHH
Q psy13765         97 NGHSRNI---NAFRRVS--CYIQQDDRLQ------PLLT---------------IENVMSLLGLDESQNTRSSQLSGGQK  150 (606)
Q Consensus        97 ~G~~~~~---~~~~~~~--~yv~Q~~~l~------~~lt---------------v~~~l~~~gl~~~~~~~~~~lSgGqr  150 (606)
                      .|.....   ....+.+  .+.+|.....      +..+               ++++++.+|+.+..++.+.+||||||
T Consensus       148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~  227 (608)
T 3j16_B          148 RGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGEL  227 (608)
T ss_dssp             TTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHH
T ss_pred             cChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHH
Confidence            3322110   0111111  2333322110      1111               34566667777777777777777777


Q ss_pred             HHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy13765        151 KRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICT  230 (606)
Q Consensus       151 qRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~  230 (606)
                      |||+||++|+.+                              |++|+|||||+|||+.++..+.++|++++++|+|||++
T Consensus       228 Qrv~iAraL~~~------------------------------p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~v  277 (608)
T 3j16_B          228 QRFAIGMSCVQE------------------------------ADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICV  277 (608)
T ss_dssp             HHHHHHHHHHSC------------------------------CSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEE
T ss_pred             HHHHHHHHHHhC------------------------------CCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            777655555555                              99999999999999999999999999998889999999


Q ss_pred             ecCCchHHHhhcceeeeecCCcEEEE
Q psy13765        231 IHQPSATLFQMFDQVYLLSGGQCLYQ  256 (606)
Q Consensus       231 ~H~~~~~i~~~~D~v~~L~~G~~~~~  256 (606)
                      +|++. .+..++|++++|++|..++.
T Consensus       278 tHdl~-~~~~~~drv~vl~~~~~~~~  302 (608)
T 3j16_B          278 EHDLS-VLDYLSDFVCIIYGVPSVYG  302 (608)
T ss_dssp             CSCHH-HHHHHCSEEEEEESCTTTEE
T ss_pred             eCCHH-HHHHhCCEEEEEeCCccccc
Confidence            99976 57889999999998776553

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.97  E-value=7.2e-31  Score=292.59  Aligned_cols=164  Identities=21%  Similarity=0.303  Sum_probs=128.1

Q ss_pred             EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEE-----------EECCccCCh---hhhc--ccEEEEccC----CC
Q psy13765         59 FPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQI-----------LTNGHSRNI---NAFR--RVSCYIQQD----DR  118 (606)
Q Consensus        59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I-----------~~~G~~~~~---~~~~--~~~~yv~Q~----~~  118 (606)
                      .++||++||+||||||||||+|+|+|+..| .+|+|           .++|++...   ....  ..+..+.|.    +.
T Consensus        22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p-~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (538)
T 3ozx_A           22 PKNNTILGVLGKNGVGKTTVLKILAGEIIP-NFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASK  100 (538)
T ss_dssp             CCTTEEEEEECCTTSSHHHHHHHHTTSSCC-CTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGT
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhh
Confidence            569999999999999999999999999877 48988           566754421   0011  123333333    22


Q ss_pred             CCCC------------CcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHH
Q psy13765        119 LQPL------------LTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIA  186 (606)
Q Consensus       119 l~~~------------ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA  186 (606)
                      ++..            -.++++++.+|+.+..++.+.+|||||||||+||++|+.+                        
T Consensus       101 ~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~------------------------  156 (538)
T 3ozx_A          101 FLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLRE------------------------  156 (538)
T ss_dssp             TCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSC------------------------
T ss_pred             hccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcC------------------------
Confidence            2221            1246677888888888888888999999988876666666                        


Q ss_pred             HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765        187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY  255 (606)
Q Consensus       187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~  255 (606)
                            |++|+|||||+|||+.++..+.++|+++++ |+|||+++|++. .+..+||++++|++|...+
T Consensus       157 ------p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~~~~~~~  217 (538)
T 3ozx_A          157 ------ADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHIIYGESSVY  217 (538)
T ss_dssp             ------CSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEEEEEETTTE
T ss_pred             ------CCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEEecCCcccc
Confidence                  999999999999999999999999999976 999999999986 6789999999998765443

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.96  E-value=3.4e-29  Score=289.92  Aligned_cols=95  Identities=28%  Similarity=0.427  Sum_probs=86.7

Q ss_pred             ccCCCCCCCCchhhhHHHHHHhhhcC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcc
Q psy13765        167 FLDEPTTSNPNDQKKRLSIALELINN---PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFD  243 (606)
Q Consensus       167 ~~de~~~~~s~g~~krl~IA~aL~~~---P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D  243 (606)
                      .++++...|||||||||.||++|+.+   |+||||||||+|||+.+...+.++|++++++|.|||+++||++ .+ +.||
T Consensus       723 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~-~i-~~aD  800 (842)
T 2vf7_A          723 RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ-VV-AASD  800 (842)
T ss_dssp             BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCS
T ss_pred             cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCC
Confidence            35788888999999999999999996   7999999999999999999999999999988999999999976 45 8899


Q ss_pred             eeeee------cCCcEEEEcChhHHH
Q psy13765        244 QVYLL------SGGQCLYQGATDQLV  263 (606)
Q Consensus       244 ~v~~L------~~G~~~~~G~~~~~~  263 (606)
                      ++++|      ++|++++.|+++++.
T Consensus       801 rii~L~p~~g~~~G~Iv~~g~~~el~  826 (842)
T 2vf7_A          801 WVLDIGPGAGEDGGRLVAQGTPAEVA  826 (842)
T ss_dssp             EEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred             EEEEECCCCCCCCCEEEEEcCHHHHH
Confidence            99999      799999999999874

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.96  E-value=1.3e-28  Score=285.64  Aligned_cols=96  Identities=26%  Similarity=0.458  Sum_probs=85.5

Q ss_pred             ccCCCCCCCCchhhhHHHHHHhhhcC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcc
Q psy13765        167 FLDEPTTSNPNDQKKRLSIALELINN---PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFD  243 (606)
Q Consensus       167 ~~de~~~~~s~g~~krl~IA~aL~~~---P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D  243 (606)
                      .++++...|||||||||.||++|+.+   |++|||||||+|||+.+...++++|++++++|.|||+++|++. .+ +.||
T Consensus       838 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~i-~~aD  915 (972)
T 2r6f_A          838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-VI-KTAD  915 (972)
T ss_dssp             BTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCS
T ss_pred             cccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCC
Confidence            46777888888888888888888876   4999999999999999999999999999988999999999976 34 7899


Q ss_pred             eeeee------cCCcEEEEcChhHHHH
Q psy13765        244 QVYLL------SGGQCLYQGATDQLVN  264 (606)
Q Consensus       244 ~v~~L------~~G~~~~~G~~~~~~~  264 (606)
                      ++++|      ++|++++.|+++++..
T Consensus       916 rIivL~p~gG~~~G~Iv~~g~~~el~~  942 (972)
T 2r6f_A          916 YIIDLGPEGGDRGGQIVAVGTPEEVAE  942 (972)
T ss_dssp             EEEEECSSSTTSCCSEEEEESHHHHHT
T ss_pred             EEEEEcCCCCCCCCEEEEecCHHHHHh
Confidence            99999      7899999999998753

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.96  E-value=3.5e-28  Score=283.68  Aligned_cols=96  Identities=25%  Similarity=0.458  Sum_probs=84.9

Q ss_pred             ccCCCCCCCCchhhhHHHHHHhhhcCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcc
Q psy13765        167 FLDEPTTSNPNDQKKRLSIALELINNP---RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFD  243 (606)
Q Consensus       167 ~~de~~~~~s~g~~krl~IA~aL~~~P---~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D  243 (606)
                      .++++...|||||||||.||+||+++|   +||||||||+|||+.+...+++.|++++++|.|||+++|+++ .+ +.||
T Consensus       798 ~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~-~i-~~AD  875 (916)
T 3pih_A          798 KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD-VI-KNAD  875 (916)
T ss_dssp             BTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCS
T ss_pred             hccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCC
Confidence            356777788888888888888887665   799999999999999999999999999988999999999975 34 6799


Q ss_pred             eeeee------cCCcEEEEcChhHHHH
Q psy13765        244 QVYLL------SGGQCLYQGATDQLVN  264 (606)
Q Consensus       244 ~v~~L------~~G~~~~~G~~~~~~~  264 (606)
                      +|++|      ++|++++.|+++++.+
T Consensus       876 rIivLgp~gg~~~G~Iv~~Gtpeel~~  902 (916)
T 3pih_A          876 HIIDLGPEGGKEGGYIVATGTPEEIAK  902 (916)
T ss_dssp             EEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred             EEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence            99999      8999999999999863

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.95  E-value=7.9e-28  Score=259.73  Aligned_cols=80  Identities=13%  Similarity=0.248  Sum_probs=73.4

Q ss_pred             CCchhhhHHHHHHhhhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeee----
Q psy13765        175 NPNDQKKRLSIALELINNP--RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL----  248 (606)
Q Consensus       175 ~s~g~~krl~IA~aL~~~P--~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L----  248 (606)
                      +|||||||+.||++|+.+|  ++|||||||+|||+.++..+.+.|++++ +|.|||+|||++.  +.+.||++++|    
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~--~~~~~d~i~~l~k~~  372 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ--IAARAHHHYKVEKQV  372 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH--HHTTCSEEEEEEEEE
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH--HHhhcCeEEEEEEec
Confidence            5999999999999999999  9999999999999999999999999998 5899999999974  45889999999    


Q ss_pred             cCCcEEEEc
Q psy13765        249 SGGQCLYQG  257 (606)
Q Consensus       249 ~~G~~~~~G  257 (606)
                      ++|+++...
T Consensus       373 ~~G~~~~~~  381 (415)
T 4aby_A          373 EDGRTVSHV  381 (415)
T ss_dssp             ETTEEEEEE
T ss_pred             cCCceEEEE
Confidence            899987653

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.94  E-value=6.1e-29  Score=271.97  Aligned_cols=167  Identities=14%  Similarity=0.122  Sum_probs=123.6

Q ss_pred             eeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcc-E-EEECCccCChhhhcccEEEEccCCCC---CCCCcHHH
Q psy13765         53 KNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTG-Q-ILTNGHSRNINAFRRVSCYIQQDDRL---QPLLTIEN  127 (606)
Q Consensus        53 ~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G-~-I~~~G~~~~~~~~~~~~~yv~Q~~~l---~~~ltv~~  127 (606)
                      .++|+++++|++++|+||||||||||+|+|+|+..+ .+| + |.+||.      .++.++|++|+..+   .+.+|+.+
T Consensus       129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p-~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~e  201 (460)
T 2npi_A          129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK-FNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQL  201 (460)
T ss_dssp             HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH-HHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTTC
T ss_pred             hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc-cCCceeEEEcCC------ccCCeeeeccchhhcccccccchhh
Confidence            478999999999999999999999999999999876 589 8 999982      25679999998843   33456543


Q ss_pred             HH-------------------HHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHh
Q psy13765        128 VM-------------------SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALE  188 (606)
Q Consensus       128 ~l-------------------~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~a  188 (606)
                      .+                   +.+|+.+..+  +.+||||||||++                              ||+|
T Consensus       202 ni~~~~~~~~~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrla------------------------------lAra  249 (460)
T 2npi_A          202 PTWGQSLTSGATLLHNKQPMVKNFGLERINE--NKDLYLECISQLG------------------------------QVVG  249 (460)
T ss_dssp             TTCSCBCBSSCCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHH------------------------------HHHH
T ss_pred             hhcccccccCcchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHH------------------------------HHHH
Confidence            22                   1112222221  3345555555555                              5555


Q ss_pred             --hhcCCcE----EEEeC-CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc--h---HHHhhcce-----eeeec-C
Q psy13765        189 --LINNPRV----MFLDE-PTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS--A---TLFQMFDQ-----VYLLS-G  250 (606)
Q Consensus       189 --L~~~P~l----llLDE-PTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~--~---~i~~~~D~-----v~~L~-~  250 (606)
                        |+.+|++    ||||| ||+|||+. ...+.+++++   .|+|+|+++|+.+  .   .+.+++|+     +++|+ +
T Consensus       250 ~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~  325 (460)
T 2npi_A          250 QRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKL  325 (460)
T ss_dssp             HHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCC
T ss_pred             HHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCC
Confidence              5566999    99999 99999999 4444444433   3889999999976  1   45589999     99999 9


Q ss_pred             CcEEEEcChhHHH
Q psy13765        251 GQCLYQGATDQLV  263 (606)
Q Consensus       251 G~~~~~G~~~~~~  263 (606)
                      |+++ .|+++++.
T Consensus       326 G~iv-~g~~~~~~  337 (460)
T 2npi_A          326 DGVS-AVDDVYKR  337 (460)
T ss_dssp             TTCC-CCCHHHHH
T ss_pred             CcEE-ECCHHHHh
Confidence            9999 99987653

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.93  E-value=4.2e-26  Score=243.06  Aligned_cols=86  Identities=20%  Similarity=0.392  Sum_probs=78.7

Q ss_pred             cCCCCCCCCchhhhHHHHHHhhh------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh
Q psy13765        168 LDEPTTSNPNDQKKRLSIALELI------NNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQM  241 (606)
Q Consensus       168 ~de~~~~~s~g~~krl~IA~aL~------~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~  241 (606)
                      +|.++..|||||||||+||+||+      .+|++|||||||+|||+.++..+++.|++++++|.|||+++|++..  .+.
T Consensus       273 ~~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~--~~~  350 (365)
T 3qf7_A          273 IERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF--SEA  350 (365)
T ss_dssp             EEEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH--HTT
T ss_pred             cCCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH--HHh
Confidence            35688889999999999999999      7999999999999999999999999999998889999999999753  688


Q ss_pred             cceeeeecCCcEEE
Q psy13765        242 FDQVYLLSGGQCLY  255 (606)
Q Consensus       242 ~D~v~~L~~G~~~~  255 (606)
                      +|++++|++|+++.
T Consensus       351 ~d~~~~l~~G~i~~  364 (365)
T 3qf7_A          351 FDRKLRITGGVVVN  364 (365)
T ss_dssp             CSCEEEEETTEEC-
T ss_pred             CCEEEEEECCEEEe
Confidence            99999999999874

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.92  E-value=3.8e-27  Score=231.94  Aligned_cols=148  Identities=15%  Similarity=0.163  Sum_probs=100.9

Q ss_pred             ccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCC--CCCCCC
Q psy13765         46 QEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDD--RLQPLL  123 (606)
Q Consensus        46 ~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~--~l~~~l  123 (606)
                      .+++.+|+|+    ++||+++|+||||||||||+++|+|+ ++ .+|+|.......+....++.+|||+|++  .+.+..
T Consensus        10 ~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p-~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~   83 (208)
T 3b85_A           10 LGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL-QSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYL   83 (208)
T ss_dssp             HHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH-HTTSCSEEEEEECSCCTTCCCCSSCC------CTTT
T ss_pred             HhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC-cCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHH
Confidence            3557799996    89999999999999999999999999 76 5888842111111123467899999986  110100


Q ss_pred             cHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCC
Q psy13765        124 TIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTT  203 (606)
Q Consensus       124 tv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTs  203 (606)
                        ......+.  ..       ..   ++++   .+++.. .          +  |||||++||+||+.+|++|+|||||+
T Consensus        84 --~~~~~~~~--~~-------~~---~~~~---~~~l~~-g----------l--Gq~qrv~lAraL~~~p~lllLDEPts  133 (208)
T 3b85_A           84 --RPLHDALR--DM-------VE---PEVI---PKLMEA-G----------I--VEVAPLAYMRGRTLNDAFVILDEAQN  133 (208)
T ss_dssp             --HHHHHHHT--TT-------SC---TTHH---HHHHHT-T----------S--EEEEEGGGGTTCCBCSEEEEECSGGG
T ss_pred             --HHHHHHHH--Hh-------cc---HHHH---HHHHHh-C----------C--chHHHHHHHHHHhcCCCEEEEeCCcc
Confidence              00001000  00       00   1222   122221 1          1  99999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765        204 GLDSQSCSQCIKLLKMISQQGRTIICTIHQPS  235 (606)
Q Consensus       204 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~  235 (606)
                      |    ++..+.+.|+++ ++|+||| +|||++
T Consensus       134 ~----~~~~l~~~l~~l-~~g~tii-vtHd~~  159 (208)
T 3b85_A          134 T----TPAQMKMFLTRL-GFGSKMV-VTGDIT  159 (208)
T ss_dssp             C----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred             c----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence            9    888999999988 6689999 999975

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.91  E-value=8.3e-26  Score=215.18  Aligned_cols=143  Identities=16%  Similarity=0.232  Sum_probs=91.9

Q ss_pred             eeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCC-CcHHHHHHHc
Q psy13765         54 NLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPL-LTIENVMSLL  132 (606)
Q Consensus        54 ~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~-ltv~~~l~~~  132 (606)
                      |||+++++||+++|+||||||||||+|++.+       |...++     .+.++   |+++|++.-... -++.+.+   
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~-------~~~~~~-----~d~~~---g~~~~~~~~~~~~~~~~~~~---   62 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK-------PTEVIS-----SDFCR---GLMSDDENDQTVTGAAFDVL---   62 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHHSC-------GGGEEE-----HHHHH---HHHCSSTTCGGGHHHHHHHH---
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHHcc-------CCeEEc-----cHHHH---HHhcCcccchhhHHHHHHHH---
Confidence            6899999999999999999999999999653       111111     11222   566666421100 0000000   


Q ss_pred             CCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHH----
Q psy13765        133 GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQ----  208 (606)
Q Consensus       133 gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~----  208 (606)
                                          ...+.+........+.|.+ ...|+|||||+.||+|++.+|++|+|||||+|||+.    
T Consensus        63 --------------------~~~~~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R  121 (171)
T 4gp7_A           63 --------------------HYIVSKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR  121 (171)
T ss_dssp             --------------------HHHHHHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred             --------------------HHHHHHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence                                0011111111111122322 223566666666777777779999999999999999    


Q ss_pred             ------------HHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765        209 ------------SCSQCIKLLKMISQQGRTIICTIHQPS  235 (606)
Q Consensus       209 ------------~~~~i~~~l~~l~~~g~tii~~~H~~~  235 (606)
                                  ...++.+.+++++++|.|+|+++|+++
T Consensus       122 ~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~  160 (171)
T 4gp7_A          122 TDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE  160 (171)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred             cCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence                        568899999999878999999999976

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.91  E-value=4.2e-24  Score=223.71  Aligned_cols=92  Identities=18%  Similarity=0.240  Sum_probs=75.5

Q ss_pred             cCCCCCCCCchhhhHHHHHHhhh----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcc
Q psy13765        168 LDEPTTSNPNDQKKRLSIALELI----NNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFD  243 (606)
Q Consensus       168 ~de~~~~~s~g~~krl~IA~aL~----~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D  243 (606)
                      .|.+...+|+|||||++||++|+    .+|++++|||||++||+.....+.+.|++++ +|.|||+++|++.  +.+.||
T Consensus       213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d  289 (322)
T 1e69_A          213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAAD  289 (322)
T ss_dssp             CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCS
T ss_pred             ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCc
Confidence            45667789999999999999997    6899999999999999999999999999985 4899999999964  468899


Q ss_pred             ee--eeecCCcE-EEEcChhHH
Q psy13765        244 QV--YLLSGGQC-LYQGATDQL  262 (606)
Q Consensus       244 ~v--~~L~~G~~-~~~G~~~~~  262 (606)
                      ++  ++|.+|+. +...+.++.
T Consensus       290 ~~~~v~~~~g~s~~~~~~~~~~  311 (322)
T 1e69_A          290 LLHGVTMVNGVSAIVPVEVEKI  311 (322)
T ss_dssp             EEEEEEESSSCEEEEECCC---
T ss_pred             eEEEEEEeCCEEEEEEEEcchh
Confidence            87  77777754 445555553

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.89  E-value=2.4e-25  Score=239.88  Aligned_cols=172  Identities=13%  Similarity=0.133  Sum_probs=126.2

Q ss_pred             cccceeeeEEEeCCe--------------------EEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcc
Q psy13765         49 KDVLKNLCGRFPSNQ--------------------LIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR  108 (606)
Q Consensus        49 ~~iL~~vs~~i~~Ge--------------------~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~  108 (606)
                      +.+|+|||+++++|+                    +++|+||||||||||+|+|+|+.++ .+|+|.++|.+..    + 
T Consensus        36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p-~~GsI~~~g~~~t----~-  109 (413)
T 1tq4_A           36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE-EEGAAKTGVVEVT----M-  109 (413)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT-STTSCCCCC--------C-
T ss_pred             HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc-cCceEEECCeecc----e-
Confidence            568999999999999                    9999999999999999999999876 5899999986542    1 


Q ss_pred             cEEEEccCCCCCCCCc-------------HHHHHHHcCCccccCCccccCChH--HHHHHHHHHHHhcC-CcccccCCCC
Q psy13765        109 VSCYIQQDDRLQPLLT-------------IENVMSLLGLDESQNTRSSQLSGG--QKKRLSIALELINN-PRVMFLDEPT  172 (606)
Q Consensus       109 ~~~yv~Q~~~l~~~lt-------------v~~~l~~~gl~~~~~~~~~~lSgG--qrqRv~ia~~L~~~-~~~~~~de~~  172 (606)
                       .++++|++ .++.+|             ++++++.+++.+.. ..+. +|+|  ||||+.+|++|... .+++      
T Consensus       110 -~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~-~~~~-lS~G~~~kqrv~la~aL~~~~~p~~------  179 (413)
T 1tq4_A          110 -ERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYD-FFII-ISATRFKKNDIDIAKAISMMKKEFY------  179 (413)
T ss_dssp             -CCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCS-EEEE-EESSCCCHHHHHHHHHHHHTTCEEE------
T ss_pred             -eEEecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCCccC-CeEE-eCCCCccHHHHHHHHHHHhcCCCeE------
Confidence             27888875 344443             46677777766542 2223 7777  77777777766651 0000      


Q ss_pred             CCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----CEEEEEecCCch-HHHhhc
Q psy13765        173 TSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMIS-----QQG----RTIICTIHQPSA-TLFQMF  242 (606)
Q Consensus       173 ~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~-----~~g----~tii~~~H~~~~-~i~~~~  242 (606)
                                     ...++|++++|||||+|||+.++.++.+.++++.     +.|    .+|++++|+.+. .+.+++
T Consensus       180 ---------------lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~  244 (413)
T 1tq4_A          180 ---------------FVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLM  244 (413)
T ss_dssp             ---------------EEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHH
T ss_pred             ---------------EEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHH
Confidence                           1112599999999999999999999999999985     333    678899998763 367788


Q ss_pred             ceee-eecCC
Q psy13765        243 DQVY-LLSGG  251 (606)
Q Consensus       243 D~v~-~L~~G  251 (606)
                      |++. .|.+|
T Consensus       245 d~I~~~Lpeg  254 (413)
T 1tq4_A          245 DKLISDLPIY  254 (413)
T ss_dssp             HHHHHHSCGG
T ss_pred             HHHHHhCccc
Confidence            8875 44444

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.89  E-value=1.8e-24  Score=207.75  Aligned_cols=144  Identities=11%  Similarity=0.098  Sum_probs=96.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---ChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCc--ccc
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLD--ESQ  138 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~--~~~  138 (606)
                      .++|+||||||||||+++|+|+..      |.++|...   .....++.+||++|+....     ++++..++..  +..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~------i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~-----~~~~~~~~~~~~~~~   70 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG------KRAIGFWTEEVRDPETKKRTGFRIITTEGK-----KKIFSSKFFTSKKLV   70 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG------GGEEEEEEEEEC------CCEEEEEETTCC-----EEEEEETTCCCSSEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC------CcCCCEEhhhhccccccceeEEEeecCcHH-----HHHHHhhcCCccccc
Confidence            589999999999999999999863      33444321   1113467799999976211     1111111111  234


Q ss_pred             CCccccCChHHHHHHHHHHH-----HhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeC--CCCCCCHHHHH
Q psy13765        139 NTRSSQLSGGQKKRLSIALE-----LINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDE--PTTGLDSQSCS  211 (606)
Q Consensus       139 ~~~~~~lSgGqrqRv~ia~~-----L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDE--PTsgLD~~~~~  211 (606)
                      ++++.+||||||||+++|++     ++.+                              |++++|||  ||++||+....
T Consensus        71 ~~~~~~lSgG~~qr~~la~aa~~~~l~~~------------------------------p~llilDEigp~~~ld~~~~~  120 (178)
T 1ye8_A           71 GSYGVNVQYFEELAIPILERAYREAKKDR------------------------------RKVIIIDEIGKMELFSKKFRD  120 (178)
T ss_dssp             TTEEECHHHHHHHHHHHHHHHHHHHHHCT------------------------------TCEEEECCCSTTGGGCHHHHH
T ss_pred             cccccCcCHHHHHHHHHHhhccccccccC------------------------------CCEEEEeCCCCcccCCHHHHH
Confidence            55566778888777776664     5555                              99999999  99999999999


Q ss_pred             HHHHHHHHHHhCCCEEEEEec--CCchHHHhhcceeeeecCCcEEE
Q psy13765        212 QCIKLLKMISQQGRTIICTIH--QPSATLFQMFDQVYLLSGGQCLY  255 (606)
Q Consensus       212 ~i~~~l~~l~~~g~tii~~~H--~~~~~i~~~~D~v~~L~~G~~~~  255 (606)
                      .+.+.+++   .+.|+|+++|  +....+..++|+    .+|+++.
T Consensus       121 ~l~~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~  159 (178)
T 1ye8_A          121 LVRQIMHD---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE  159 (178)
T ss_dssp             HHHHHHTC---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred             HHHHHHhc---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence            99888865   4778999997  234456677887    5566654

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.86  E-value=4.2e-25  Score=228.91  Aligned_cols=171  Identities=15%  Similarity=0.244  Sum_probs=118.2

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhc
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR  107 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~  107 (606)
                      .|+++||++.|        + +.+|+|+|++|++|++++|+||||||||||+++|+|+.    +|+|.            
T Consensus       101 ~i~~~~vs~~y--------~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I~------------  155 (305)
T 2v9p_A          101 FFNYQNIELIT--------F-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL----GGSVL------------  155 (305)
T ss_dssp             HHHHTTCCHHH--------H-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH----TCEEE------------
T ss_pred             eEEEEEEEEEc--------C-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc----CceEE------------
Confidence            37889998875        2 56999999999999999999999999999999999986    68884            


Q ss_pred             ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHH
Q psy13765        108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL  187 (606)
Q Consensus       108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~  187 (606)
                         +|++|++.+++. |+.+  +.+.+..       ..+.+-.+   ....++  |+  .+|  ...||||||||   ||
T Consensus       156 ---~~v~q~~~lf~~-ti~~--~ni~~~~-------~~~~~~~~---~i~~~L--~~--gld--g~~LSgGqkQR---AR  210 (305)
T 2v9p_A          156 ---SFANHKSHFWLA-SLAD--TRAALVD-------DATHACWR---YFDTYL--RN--ALD--GYPVSIDRKHK---AA  210 (305)
T ss_dssp             ---CGGGTTSGGGGG-GGTT--CSCEEEE-------EECHHHHH---HHHHTT--TG--GGG--TCCEECCCSSC---CC
T ss_pred             ---EEecCccccccc-cHHH--HhhccCc-------cccHHHHH---HHHHHh--Hc--cCC--ccCcCHHHHHH---HH
Confidence               345555555442 2210  0000000       01111111   111111  11  233  55788888888   89


Q ss_pred             hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHHHHH
Q psy13765        188 ELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLS  267 (606)
Q Consensus       188 aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~~f~  267 (606)
                      ||+++|+|||    ||+||+.+...+..              .+|+++.  .+.+|++ +|++|++++.|+++++..+|.
T Consensus       211 All~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~~--~~~aD~i-vl~~G~iv~~g~~~el~~~y~  269 (305)
T 2v9p_A          211 VQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQT--FRFEQPC-TDESGEQPFNITDADWKSFFV  269 (305)
T ss_dssp             CEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEEE--EECCCCC-CCC---CCCCCCHHHHHHHHH
T ss_pred             HHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHHH--HHhCCEE-EEeCCEEEEeCCHHHHHHHHH
Confidence            9999999999    99999999888752              1788763  4789999 999999999999999866665


Q ss_pred             hC
Q psy13765        268 SV  269 (606)
Q Consensus       268 ~~  269 (606)
                      .+
T Consensus       270 ~l  271 (305)
T 2v9p_A          270 RL  271 (305)
T ss_dssp             HS
T ss_pred             HH
Confidence            43

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.85  E-value=1.6e-22  Score=212.53  Aligned_cols=132  Identities=12%  Similarity=0.188  Sum_probs=103.2

Q ss_pred             cceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC-ChhhhcccEEEEccCCCCCCCCcHHHHH
Q psy13765         51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR-NINAFRRVSCYIQQDDRLQPLLTIENVM  129 (606)
Q Consensus        51 iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~-~~~~~~~~~~yv~Q~~~l~~~ltv~~~l  129 (606)
                      +++++|+.+++|++++|+||||||||||+|+|+|+.++ .+|.|.++|.+. .....++.+++++|              
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~~~~~~i~~~~g--------------  224 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFKHHKNYTQLFFG--------------  224 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCSSCSSEEEEECB--------------
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccccchhEEEEEeC--------------
Confidence            79999999999999999999999999999999999876 589999999642 21223455665541              


Q ss_pred             HHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHH
Q psy13765        130 SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQS  209 (606)
Q Consensus       130 ~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~  209 (606)
                                       |||+||++                              ||+||..+|++|++||||+      
T Consensus       225 -----------------gg~~~r~~------------------------------la~aL~~~p~ilildE~~~------  251 (330)
T 2pt7_A          225 -----------------GNITSADC------------------------------LKSCLRMRPDRIILGELRS------  251 (330)
T ss_dssp             -----------------TTBCHHHH------------------------------HHHHTTSCCSEEEECCCCS------
T ss_pred             -----------------CChhHHHH------------------------------HHHHhhhCCCEEEEcCCCh------
Confidence                             55666665                              5555555599999999998      


Q ss_pred             HHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765        210 CSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC  253 (606)
Q Consensus       210 ~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~  253 (606)
                       .++.+.|+.+...+.|+++|+|+++  ..+.+||+++|.+|+.
T Consensus       252 -~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~  292 (330)
T 2pt7_A          252 -SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSNS  292 (330)
T ss_dssp             -THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred             -HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence             2356777777654458999999987  4588999999988753

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.85  E-value=3.2e-24  Score=210.20  Aligned_cols=187  Identities=8%  Similarity=0.030  Sum_probs=108.2

Q ss_pred             cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHH
Q psy13765         47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIE  126 (606)
Q Consensus        47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~  126 (606)
                      +.+.+++|  .++++||+++|+||||||||||+|+|+|+.+ ...+.+.+.+.+.. ...++.++|++|++..++.+|+.
T Consensus         7 ~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~-~i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~   82 (207)
T 1znw_A            7 DTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP-NLHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQ   82 (207)
T ss_dssp             --------------CCCEEEEECSTTSSHHHHHHHHHHHST-TCEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHT
T ss_pred             CCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC-ceEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhc
Confidence            34668888  6999999999999999999999999999874 23333222222211 22356789999998777666553


Q ss_pred             HHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHH---hhhcCCcEEEEeCCC
Q psy13765        127 NVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL---ELINNPRVMFLDEPT  202 (606)
Q Consensus       127 ~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~---aL~~~P~lllLDEPT  202 (606)
                      +.+... .....+-...+.+..+ ++++.-+..++       +|   ....|.+..+-..+.   +|+.+|++++|||||
T Consensus        83 ~~l~~~-~~~~~n~~~~g~~~~~~~~~~~~~~~~~-------~~---l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~  151 (207)
T 1znw_A           83 GELLEW-AEIHGGLHRSGTLAQPVRAAAATGVPVL-------IE---VDLAGARAIKKTMPEAVTVFLAPPSWQDLQARL  151 (207)
T ss_dssp             TCEEEE-EEEGGGTEEEEEEHHHHHHHHHHTCCEE-------EE---CCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHH
T ss_pred             CCceee-hhhcCchhhcCCcHHHHHHHHHcCCeEE-------EE---eCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHH
Confidence            321100 0000000011122222 22222110000       00   011222222222222   889999999999999


Q ss_pred             CCC----CHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeec
Q psy13765        203 TGL----DSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLS  249 (606)
Q Consensus       203 sgL----D~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~  249 (606)
                      +|+    |+..+.++.+.++++++ +|.|+|+++||++ ++.++||++++|.
T Consensus       152 ~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~  202 (207)
T 1znw_A          152 IGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGT  202 (207)
T ss_dssp             HTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC--
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhc
Confidence            998    78899999999999975 5899999999986 5789999999985

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.84  E-value=2.1e-21  Score=205.81  Aligned_cols=87  Identities=15%  Similarity=0.179  Sum_probs=77.9

Q ss_pred             cCCCCC-CCCchhhhHHHHHHhhh---------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q psy13765        168 LDEPTT-SNPNDQKKRLSIALELI---------NNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSAT  237 (606)
Q Consensus       168 ~de~~~-~~s~g~~krl~IA~aL~---------~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~  237 (606)
                      -|.|.. .+|+|||||+.||++|+         .+|+||+|||||++||+..+..+++.++++.   .|+|+++|. +. 
T Consensus       258 ~~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~-  332 (359)
T 2o5v_A          258 GDFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP-  332 (359)
T ss_dssp             TTEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT-
T ss_pred             CCcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc-
Confidence            355666 69999999999999999         8999999999999999999999999998764   699999994 42 


Q ss_pred             HHhhcceeeeecCCcEEEEcChhHH
Q psy13765        238 LFQMFDQVYLLSGGQCLYQGATDQL  262 (606)
Q Consensus       238 i~~~~D~v~~L~~G~~~~~G~~~~~  262 (606)
                         .+|+++++++|+++..|+++++
T Consensus       333 ---~~~~i~~l~~G~i~~~g~~~~~  354 (359)
T 2o5v_A          333 ---GAALTLRAQAGRFTPVADEEMQ  354 (359)
T ss_dssp             ---TCSEEEEEETTEEEECCCTTTS
T ss_pred             ---cCCEEEEEECCEEEecCCHHHH
Confidence               8999999999999999998875

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.84  E-value=3.8e-22  Score=207.07  Aligned_cols=161  Identities=16%  Similarity=0.168  Sum_probs=114.9

Q ss_pred             ceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-------hhh--cccEEEEccCCC-CCC
Q psy13765         52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-------NAF--RRVSCYIQQDDR-LQP  121 (606)
Q Consensus        52 L~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-------~~~--~~~~~yv~Q~~~-l~~  121 (606)
                      ++++|+++++|++++|+||||||||||++.|+|+..+ .+|+|.++|.+...       ..+  +..++|++|++. ++|
T Consensus        90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~  168 (302)
T 3b9q_A           90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA  168 (302)
T ss_dssp             CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred             ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence            4678999999999999999999999999999998765 48999999986532       122  346999999998 888


Q ss_pred             CCcHHHHHHHc-------------CCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHh
Q psy13765        122 LLTIENVMSLL-------------GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALE  188 (606)
Q Consensus       122 ~ltv~~~l~~~-------------gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~a  188 (606)
                      .+|+.+.+...             |+.+..++.+.+||                                 |||+.||+|
T Consensus       169 ~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---------------------------------kqr~~iara  215 (302)
T 3b9q_A          169 ATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---------------------------------ACKKAVGKI  215 (302)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---------------------------------HHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---------------------------------HHHHHHHHh
Confidence            88886665431             11111112222233                                 556667777


Q ss_pred             hhcCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCc--------hHHHhhcceeeeecCCcE
Q psy13765        189 LINNPR--VMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPS--------ATLFQMFDQVYLLSGGQC  253 (606)
Q Consensus       189 L~~~P~--lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~--------~~i~~~~D~v~~L~~G~~  253 (606)
                      |+.+|+  +|+|| ||+|||+...      ++++.+ .|.|+|++||...        ..+....+.|.++..|+.
T Consensus       216 l~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~  284 (302)
T 3b9q_A          216 VSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA  284 (302)
T ss_dssp             STTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred             hccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence            777799  99999 9999999854      345554 5899999999432        123345567777777754

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.84  E-value=5e-21  Score=201.82  Aligned_cols=79  Identities=25%  Similarity=0.348  Sum_probs=69.9

Q ss_pred             CCCCCCCCchhhh------HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q psy13765        169 DEPTTSNPNDQKK------RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMF  242 (606)
Q Consensus       169 de~~~~~s~g~~k------rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~  242 (606)
                      |.+...+||||||      |+.+|++|+.+|++|+|||||+|||+..+..+.+.|+++.++|.|||++||++.  +.+.|
T Consensus       243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~--~~~~~  320 (339)
T 3qkt_A          243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAA  320 (339)
T ss_dssp             EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGC
T ss_pred             cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH--HHHhC
Confidence            4566777788877      677889999999999999999999999999999999999878899999999953  57899


Q ss_pred             ceeeeec
Q psy13765        243 DQVYLLS  249 (606)
Q Consensus       243 D~v~~L~  249 (606)
                      |+++.|+
T Consensus       321 d~~~~l~  327 (339)
T 3qkt_A          321 DHVIRIS  327 (339)
T ss_dssp             SEEEEEE
T ss_pred             CEEEEEE
Confidence            9999995

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.83  E-value=3.3e-23  Score=225.36  Aligned_cols=184  Identities=13%  Similarity=0.113  Sum_probs=139.4

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCc---cCC-
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH---SRN-  102 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~---~~~-  102 (606)
                      ..++++|+++.+.       .++.+|+++ +++.+||+++|+||||||||||+++|+|+.++ ..|.|.++|+   +.. 
T Consensus       130 ~~l~~~~v~~~~~-------tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~-~~G~i~~~G~r~~ev~~  200 (438)
T 2dpy_A          130 NPLQRTPIEHVLD-------TGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA-DVIVVGLIGERGREVKD  200 (438)
T ss_dssp             CTTTSCCCCSBCC-------CSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC-SEEEEEEESCCHHHHHH
T ss_pred             CceEEeccceecC-------CCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC-CeEEEEEeceecHHHHH
Confidence            3477888887652       135799999 99999999999999999999999999999876 5899999997   322 


Q ss_pred             -------hhhhcccEEEEccC-CCCCCCCcHHHHHHH----cCCc--c---ccCCccccCChHHHHHHHHHHHHhcCCcc
Q psy13765        103 -------INAFRRVSCYIQQD-DRLQPLLTIENVMSL----LGLD--E---SQNTRSSQLSGGQKKRLSIALELINNPRV  165 (606)
Q Consensus       103 -------~~~~~~~~~yv~Q~-~~l~~~ltv~~~l~~----~gl~--~---~~~~~~~~lSgGqrqRv~ia~~L~~~~~~  165 (606)
                             ...+++.++||+|+ +..++.+++.+.+..    ++-.  +   ..+ .+..+|+|| ||+++|   +     
T Consensus       201 ~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld-~l~~lS~g~-qrvslA---l-----  270 (438)
T 2dpy_A          201 FIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMD-SLTRYAMAQ-REIALA---I-----  270 (438)
T ss_dssp             HHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEE-CHHHHHHHH-HHHHHH---T-----
T ss_pred             HHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH-hHHHHHHHH-HHHHHH---h-----
Confidence                   12356789999995 455566666443321    1100  0   011 133466776 666655   3     


Q ss_pred             cccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----EEEEEecCCch
Q psy13765        166 MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ---Q-GR-----TIICTIHQPSA  236 (606)
Q Consensus       166 ~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~---~-g~-----tii~~~H~~~~  236 (606)
                                               .+|++      |+|||+.+...+.++++++.+   + |.     ||++++||++ 
T Consensus       271 -------------------------~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-  318 (438)
T 2dpy_A          271 -------------------------GEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-  318 (438)
T ss_dssp             -------------------------TCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-
T ss_pred             -------------------------CCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-
Confidence                                     34777      999999999999999999876   3 74     9999999987 


Q ss_pred             HHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765        237 TLFQMFDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       237 ~i~~~~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                        ...+|++++|.+|+++..|+++++.
T Consensus       319 --~~iad~v~~l~dG~Ivl~~~~~~~~  343 (438)
T 2dpy_A          319 --DPIADSARAILDGHIVLSRRLAEAG  343 (438)
T ss_dssp             --CHHHHHHHHHSSEEEEECHHHHHTT
T ss_pred             --chhhceEEEEeCcEEEEeCCHHHcc
Confidence              3679999999999999999887653

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.83  E-value=1.5e-23  Score=207.57  Aligned_cols=180  Identities=14%  Similarity=0.079  Sum_probs=114.0

Q ss_pred             cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----hhhcccEEEEccCCCCCCCCc
Q psy13765         49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----NAFRRVSCYIQQDDRLQPLLT  124 (606)
Q Consensus        49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~~~yv~Q~~~l~~~lt  124 (606)
                      ..-|+|||+++++|++++|+||||||||||+++|+|+. +   |+|.+ |.+...    ...++.++|++|++.+++.++
T Consensus        10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p---G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   84 (218)
T 1z6g_A           10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P---NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL   84 (218)
T ss_dssp             ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T---TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred             cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C---CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence            45799999999999999999999999999999999986 3   88999 754311    223567899999887665332


Q ss_pred             H-HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH-----HHhhhcCCcEEEE
Q psy13765        125 I-ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI-----ALELINNPRVMFL  198 (606)
Q Consensus       125 v-~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I-----A~aL~~~P~lllL  198 (606)
                      . ++.++   .....+. ..+.+   +.+   ..+++..+.+.++|   ..+|||||||+.|     |++|+.+|++++|
T Consensus        85 ~~~~~l~---~~~~~~~-~~g~~---~~~---i~~~l~~~~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~L  151 (218)
T 1z6g_A           85 KNEDFLE---YDNYANN-FYGTL---KSE---YDKAKEQNKICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVL  151 (218)
T ss_dssp             HTTCEEE---EEEETTE-EEEEE---HHH---HHHHHHTTCEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHH
T ss_pred             hccchhh---hhhcccc-cCCCc---HHH---HHHHHhCCCcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHH
Confidence            1 00000   0000011 00111   122   23344455655665   5789999999999     8999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHh-------CCCEEEEEecCCchHHHhhcceeee
Q psy13765        199 DEPTTGLDSQSCSQCIKLLKMISQ-------QGRTIICTIHQPSATLFQMFDQVYL  247 (606)
Q Consensus       199 DEPTsgLD~~~~~~i~~~l~~l~~-------~g~tii~~~H~~~~~i~~~~D~v~~  247 (606)
                      ||||+++|..+...+.+.++++.+       .+.+.|+++|++. +.++.+|+++.
T Consensus       152 de~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~ii~  206 (218)
T 1z6g_A          152 LSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNYLL  206 (218)
T ss_dssp             HHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHHHH
Confidence            999999999999999998887654       2345566666644 34455555543

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.82  E-value=1.2e-20  Score=209.70  Aligned_cols=79  Identities=13%  Similarity=0.243  Sum_probs=72.0

Q ss_pred             CCCCCC-CchhhhHHHHHHhhhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceee
Q psy13765        170 EPTTSN-PNDQKKRLSIALELINNP--RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVY  246 (606)
Q Consensus       170 e~~~~~-s~g~~krl~IA~aL~~~P--~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~  246 (606)
                      .|...+ ||||||||.||++|+.+|  ++|+|||||+|||+.++..+.+.|+++++ |.|||++||++.  +...||+++
T Consensus       392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~  468 (517)
T 4ad8_A          392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHY  468 (517)
T ss_dssp             CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEE
T ss_pred             ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEE
Confidence            456677 999999999999999999  99999999999999999999999999987 899999999975  346799999


Q ss_pred             eecCC
Q psy13765        247 LLSGG  251 (606)
Q Consensus       247 ~L~~G  251 (606)
                      +|.+|
T Consensus       469 ~~~~~  473 (517)
T 4ad8_A          469 KVEKQ  473 (517)
T ss_dssp             EEECC
T ss_pred             EEecc
Confidence            99654

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.82  E-value=1.1e-22  Score=226.52  Aligned_cols=167  Identities=14%  Similarity=0.065  Sum_probs=117.4

Q ss_pred             cccccceeeeE-EEeCCeEEEEECCCCCCHHHHHHH--HhCCCCCCCccEEEECCccCCh--hhhcccEEEEccCCCCCC
Q psy13765         47 EPKDVLKNLCG-RFPSNQLIAIMGPSGAGKSSLLDV--LSGYRSNGVTGQILTNGHSRNI--NAFRRVSCYIQQDDRLQP  121 (606)
Q Consensus        47 ~~~~iL~~vs~-~i~~Ge~~aIiGpsGaGKSTLL~~--L~g~~~~~~~G~I~~~G~~~~~--~~~~~~~~yv~Q~~~l~~  121 (606)
                      ...++|++||+ .+++||+++|+||||||||||+++  ++|+.+++ +|.|+++|++...  ...++.+||++|++...+
T Consensus        23 ~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~-~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~  101 (525)
T 1tf7_A           23 TMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD-EPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG  101 (525)
T ss_dssp             CCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC-CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT
T ss_pred             CCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC-CCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC
Confidence            34679999999 999999999999999999999999  78987653 8999999987422  233467899999865322


Q ss_pred             CCcHHHHHHHcCCcc--ccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhh-hcCCcEEEE
Q psy13765        122 LLTIENVMSLLGLDE--SQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL-INNPRVMFL  198 (606)
Q Consensus       122 ~ltv~~~l~~~gl~~--~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL-~~~P~lllL  198 (606)
                      .+.      .+....  ........+.-++ +.-.                              +..+| ..+|+++++
T Consensus       102 ~l~------~~~~~~~~~~~~~l~~~~l~~-~~~~------------------------------~~~~LS~g~~~~lil  144 (525)
T 1tf7_A          102 KLF------ILDASPDPEGQEVVGGFDLSA-LIER------------------------------INYAIQKYRARRVSI  144 (525)
T ss_dssp             SEE------EEECCCCSSCCSCCSSHHHHH-HHHH------------------------------HHHHHHHHTCSEEEE
T ss_pred             cEE------EEecCcccchhhhhcccCHHH-HHHH------------------------------HHHHHHHcCCCEEEE
Confidence            110      000000  0001111111111 1111                              22222 134899999


Q ss_pred             eCCCC-----CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH--------HHhhcceeeeecCC
Q psy13765        199 DEPTT-----GLDSQSCSQCIKLLKMISQQGRTIICTIHQPSAT--------LFQMFDQVYLLSGG  251 (606)
Q Consensus       199 DEPTs-----gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~--------i~~~~D~v~~L~~G  251 (606)
                      ||||+     +||+..+..+.+++++++++|+|||+++|++...        ...+||+|++|++|
T Consensus       145 De~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~  210 (525)
T 1tf7_A          145 DSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV  210 (525)
T ss_dssp             ECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred             CCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence            99998     4699999999999999988899999999998752        34569999999883

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.81  E-value=3.5e-21  Score=203.97  Aligned_cols=160  Identities=16%  Similarity=0.174  Sum_probs=114.8

Q ss_pred             eeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-------hhh--cccEEEEccCCC-CCCC
Q psy13765         53 KNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-------NAF--RRVSCYIQQDDR-LQPL  122 (606)
Q Consensus        53 ~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-------~~~--~~~~~yv~Q~~~-l~~~  122 (606)
                      +++|+++++|++++|+||||||||||++.|+|+..+ .+|+|.++|.+...       ..+  +..++|++|++. +.|.
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~  226 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA  226 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc-cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence            468899999999999999999999999999998765 48999999986532       122  356999999988 8888


Q ss_pred             CcHHHHHHHc-------------CCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhh
Q psy13765        123 LTIENVMSLL-------------GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL  189 (606)
Q Consensus       123 ltv~~~l~~~-------------gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL  189 (606)
                      .++.+.+...             |+.+..+..+.+||                                 |||+.||++|
T Consensus       227 ~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---------------------------------kqr~~iaral  273 (359)
T 2og2_A          227 TVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---------------------------------ACKKAVGKIV  273 (359)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---------------------------------HHHHHHHHHS
T ss_pred             hhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---------------------------------HHHHHHHHHH
Confidence            8886665431             22222222222333                                 4555566666


Q ss_pred             hcCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCc--------hHHHhhcceeeeecCCcE
Q psy13765        190 INNPR--VMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPS--------ATLFQMFDQVYLLSGGQC  253 (606)
Q Consensus       190 ~~~P~--lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~--------~~i~~~~D~v~~L~~G~~  253 (606)
                      +.+|+  +|+|| ||+|||+.+.      ++++.+ .|.|+|++||...        +.+....+.|.++..|+.
T Consensus       274 ~~~P~e~lLvLD-pttglD~~~~------~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~  341 (359)
T 2og2_A          274 SGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA  341 (359)
T ss_dssp             TTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred             hcCCCceEEEEc-CCCCCCHHHH------HHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence            66799  99999 9999999865      345554 4899999999422        123345567777777753

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.81  E-value=5.9e-22  Score=209.38  Aligned_cols=183  Identities=16%  Similarity=0.188  Sum_probs=132.1

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC----
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN----  102 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~----  102 (606)
                      ..++.+|+++.+..       +..+|+++ ++|.+||+++|+||||||||||+++|+|...+ ..|.|.+.|++..    
T Consensus        44 ~~i~~~~l~~~~~t-------g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~-~~g~i~~~G~~~~ev~~  114 (347)
T 2obl_A           44 DPLLRQVIDQPFIL-------GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASA-DIIVLALIGERGREVNE  114 (347)
T ss_dssp             CSTTCCCCCSEECC-------SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCC-SEEEEEEESCCHHHHHH
T ss_pred             CCeeecccceecCC-------CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCC-CEEEEEEecccHHHHHH
Confidence            35778888887632       35799999 99999999999999999999999999999876 4899999886411    


Q ss_pred             ------hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccc-cC---------CccccCChHHHHHHHHHHHHhcCCccc
Q psy13765        103 ------INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDES-QN---------TRSSQLSGGQKKRLSIALELINNPRVM  166 (606)
Q Consensus       103 ------~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~-~~---------~~~~~lSgGqrqRv~ia~~L~~~~~~~  166 (606)
                            ...+++.+.+++|.+.-. ...+......+++.+. .+         ..+..+|+|| ||+++|   +      
T Consensus       115 ~i~~~~~~~~~~~v~~~~~~~~~~-~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l------  183 (347)
T 2obl_A          115 FLALLPQSTLSKCVLVVTTSDRPA-LERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---S------  183 (347)
T ss_dssp             HHTTSCHHHHTTEEEEEECTTSCH-HHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---T------
T ss_pred             HHHhhhhhhhhceEEEEECCCCCH-HHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---c------
Confidence                  112345677887754311 0111111111111111 11         2344566666 566654   2      


Q ss_pred             ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCCchHHH
Q psy13765        167 FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ--QGR-----TIICTIHQPSATLF  239 (606)
Q Consensus       167 ~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~--~g~-----tii~~~H~~~~~i~  239 (606)
                                              .+|++      |+|||+....++.++++++.+  +|.     ||++++||.+.   
T Consensus       184 ------------------------~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~~---  230 (347)
T 2obl_A          184 ------------------------GEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVND---  230 (347)
T ss_dssp             ------------------------TCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCCC---
T ss_pred             ------------------------CCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCCC---
Confidence                                    34666      999999999999999999974  487     99999999883   


Q ss_pred             hhcceeeeecCCcEEEEcChhHH
Q psy13765        240 QMFDQVYLLSGGQCLYQGATDQL  262 (606)
Q Consensus       240 ~~~D~v~~L~~G~~~~~G~~~~~  262 (606)
                      .+||+++++.+|+++..|++++.
T Consensus       231 ~i~d~v~~i~dG~Ivl~~~l~~~  253 (347)
T 2obl_A          231 PIGDEVRSILDGHIVLTRELAEE  253 (347)
T ss_dssp             HHHHHHHHHCSEEEEBCHHHHTT
T ss_pred             hhhhheEEeeCcEEEEeCCHHHc
Confidence            67999999999999999988765

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.81  E-value=4.2e-22  Score=203.64  Aligned_cols=148  Identities=16%  Similarity=0.169  Sum_probs=90.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccc
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSS  143 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~  143 (606)
                      .++|+||||||||||+|+|+|...+ .+|+|.++|++......++.++|++|++.+++.+||.+.+   ++....+.   
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~-~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~---~~g~~~~~---   76 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVS-RKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTP---GFGDQINN---   76 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC-------------CCCCCSCCEEEESCC----CCEEEEECCC---C--CCSBC---
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-CCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEech---hhhhhccc---
Confidence            4799999999999999999998776 5899999998765445567899999999999988875433   22111110   


Q ss_pred             cCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy13765        144 QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ  223 (606)
Q Consensus       144 ~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~  223 (606)
                      .-+-   +++.  ..+..+    ..+.+...+|+|||||+.||||++.   ++++||||.|||+..    .+.++++++.
T Consensus        77 ~~~~---~~i~--~~~~~~----~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~  140 (270)
T 3sop_A           77 ENCW---EPIE--KYINEQ----YEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV  140 (270)
T ss_dssp             TTCS---HHHH--HHHHHH----HHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT
T ss_pred             HHHH---HHHH--HHHHHH----HHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc
Confidence            0000   1110  000000    1122334589999999999999875   999999999999987    5666667666


Q ss_pred             CCEEEEEecCCc
Q psy13765        224 GRTIICTIHQPS  235 (606)
Q Consensus       224 g~tii~~~H~~~  235 (606)
                       ++||+++|..+
T Consensus       141 -~~vI~Vi~K~D  151 (270)
T 3sop_A          141 -VNIIPVIAKAD  151 (270)
T ss_dssp             -SEEEEEETTGG
T ss_pred             -CcEEEEEeccc
Confidence             89999998743

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.80  E-value=1.1e-20  Score=194.98  Aligned_cols=185  Identities=16%  Similarity=0.154  Sum_probs=121.5

Q ss_pred             cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcc-EEEECCccCChhhhcccEEEEccCCCCCCCCcHHH
Q psy13765         49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTG-QILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIEN  127 (606)
Q Consensus        49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G-~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~  127 (606)
                      ..+|+++++.+++|++++|+||||||||||++.|+|...+. +| .|.+.+.+.+..++++++..+.|+..+    +..+
T Consensus        22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~-~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~----~~~~   96 (296)
T 1cr0_A           22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA-MGKKVGLAMLEESVEETAEDLIGLHNRVRL----RQSD   96 (296)
T ss_dssp             CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT-SCCCEEEEESSSCHHHHHHHHHHHHTTCCG----GGCH
T ss_pred             HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH-cCCeEEEEeCcCCHHHHHHHHHHHHcCCCh----hhcc
Confidence            46899999999999999999999999999999999986542 46 675544444434444433333333221    1100


Q ss_pred             HHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchh-hhHHHHHHhhhcCCcEEEEeCCCC---
Q psy13765        128 VMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQ-KKRLSIALELINNPRVMFLDEPTT---  203 (606)
Q Consensus       128 ~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~-~krl~IA~aL~~~P~lllLDEPTs---  203 (606)
                      .+..           +.++..+.++  .+.+++....+.+.|. ....+.+| ++|+. |+++..+|+++++||||+   
T Consensus        97 ~l~~-----------~~~~~~~~~~--~~~~~l~~~~l~i~~~-~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~  161 (296)
T 1cr0_A           97 SLKR-----------EIIENGKFDQ--WFDELFGNDTFHLYDS-FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVS  161 (296)
T ss_dssp             HHHH-----------HHHHHTHHHH--HHHHHHSSSCEEEECC-CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred             cccc-----------CCCCHHHHHH--HHHHHhccCCEEEECC-CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence            1110           1122223332  2334444434444333 35677777 66666 888999999999999999   


Q ss_pred             C---CCH-HHHHHHHHHHHHHHhC-CCEEEEEecCCc-h--------------------HHHhhcceeeeecCCcE
Q psy13765        204 G---LDS-QSCSQCIKLLKMISQQ-GRTIICTIHQPS-A--------------------TLFQMFDQVYLLSGGQC  253 (606)
Q Consensus       204 g---LD~-~~~~~i~~~l~~l~~~-g~tii~~~H~~~-~--------------------~i~~~~D~v~~L~~G~~  253 (606)
                      +   +|. ....++++.|++++++ |+|||+++|+.. .                    .+...||+|++|++|+.
T Consensus       162 ~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~  237 (296)
T 1cr0_A          162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ  237 (296)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence            5   555 6678899999999875 999999999951 2                    57789999999998864

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.80  E-value=1.1e-20  Score=223.91  Aligned_cols=172  Identities=15%  Similarity=0.145  Sum_probs=114.4

Q ss_pred             EEEEEe-----eEEEEecCCcccccccccceeeeEEEeC-------CeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEE
Q psy13765         28 EIKFKD-----LTYTVSTGLGFKQEPKDVLKNLCGRFPS-------NQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQIL   95 (606)
Q Consensus        28 ~l~~~n-----l~~~~~~~~~~~~~~~~iL~~vs~~i~~-------Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~   95 (606)
                      .|+++|     |++.+.       +++.+++|+++.+++       |++++|+||||||||||||++ |+...       
T Consensus       750 ~l~i~~~rHP~l~~~~~-------~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------  814 (1022)
T 2o8b_B          750 FLELKGSRHPCITKTFF-------GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-------  814 (1022)
T ss_dssp             CEEEEEECCCC-------------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------
T ss_pred             eEEEEeccccEEEEEec-------CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------
Confidence            588999     887752       345799999999987       999999999999999999999 87531       


Q ss_pred             ECCccCChhhhcccEE-EEccCCCCCCCCcH-HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCC
Q psy13765         96 TNGHSRNINAFRRVSC-YIQQDDRLQPLLTI-ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT  173 (606)
Q Consensus        96 ~~G~~~~~~~~~~~~~-yv~Q~~~l~~~ltv-~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~  173 (606)
                                 ..++| ||||+..   .+++ ++++..+|+.+........+|+++++ ++                   
T Consensus       815 -----------~aqiG~~Vpq~~~---~l~v~d~I~~rig~~d~~~~~~stf~~em~~-~a-------------------  860 (1022)
T 2o8b_B          815 -----------MAQMGCYVPAEVC---RLTPIDRVFTRLGASDRIMSGESTFFVELSE-TA-------------------  860 (1022)
T ss_dssp             -----------HHTTTCCEESSEE---EECCCSBEEEECC---------CHHHHHHHH-HH-------------------
T ss_pred             -----------HhheeEEeccCcC---CCCHHHHHHHHcCCHHHHhhchhhhHHHHHH-HH-------------------
Confidence                       12344 8998753   2232 33333445544444334455555543 55                   


Q ss_pred             CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCC
Q psy13765        174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSC-SQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGG  251 (606)
Q Consensus       174 ~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~-~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G  251 (606)
                                 +|++++++|+++||||||+|+|+... ..+..+|+.++++ |.++|++||+.+ .+...+|++.++ +|
T Consensus       861 -----------~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~-~g  927 (1022)
T 2o8b_B          861 -----------SILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVR-LG  927 (1022)
T ss_dssp             -----------HHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEE-EE
T ss_pred             -----------HHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceee-cC
Confidence                       45555555999999999999999985 5578999999876 999999999976 466789999887 58


Q ss_pred             cEE--EEcChhH
Q psy13765        252 QCL--YQGATDQ  261 (606)
Q Consensus       252 ~~~--~~G~~~~  261 (606)
                      ++.  +.|++++
T Consensus       928 ~~~~~~~~~~~~  939 (1022)
T 2o8b_B          928 HMACMVENECED  939 (1022)
T ss_dssp             EEEEC-------
T ss_pred             eEEEEEecCccc
Confidence            887  5565543

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.79  E-value=2.7e-20  Score=207.36  Aligned_cols=154  Identities=15%  Similarity=0.088  Sum_probs=111.0

Q ss_pred             eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccE--EEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcC
Q psy13765         56 CGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQ--ILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLG  133 (606)
Q Consensus        56 s~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~--I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~g  133 (606)
                      ++.+++|++++|+||||||||||+++++|...+  .|+  +.+.+++.. ..+.+..    .  .  ....++++ ...|
T Consensus       275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~--~G~~vi~~~~ee~~-~~l~~~~----~--~--~g~~~~~~-~~~g  342 (525)
T 1tf7_A          275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA--NKERAILFAYEESR-AQLLRNA----Y--S--WGMDFEEM-ERQN  342 (525)
T ss_dssp             TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT--TTCCEEEEESSSCH-HHHHHHH----H--T--TSCCHHHH-HHTT
T ss_pred             CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh--CCCCEEEEEEeCCH-HHHHHHH----H--H--cCCCHHHH-HhCC
Confidence            458999999999999999999999999998654  354  344443221 1111110    0  0  01223342 2345


Q ss_pred             CccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHH-----
Q psy13765        134 LDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQ-----  208 (606)
Q Consensus       134 l~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~-----  208 (606)
                      +....+..+..|||||+||+.+|+++..+                              |+++++| ||+|||..     
T Consensus       343 ~~~~~~~~p~~LS~g~~q~~~~a~~l~~~------------------------------p~llilD-p~~~Ld~~~~~~~  391 (525)
T 1tf7_A          343 LLKIVCAYPESAGLEDHLQIIKSEINDFK------------------------------PARIAID-SLSALARGVSNNA  391 (525)
T ss_dssp             SEEECCCCGGGSCHHHHHHHHHHHHHTTC------------------------------CSEEEEE-CHHHHTSSSCHHH
T ss_pred             CEEEEEeccccCCHHHHHHHHHHHHHhhC------------------------------CCEEEEc-ChHHHHhhCChHH
Confidence            55556666666777777777655555544                              9999999 99999999     


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEEecCCc---------hHHHhhcceeeeecCCc
Q psy13765        209 SCSQCIKLLKMISQQGRTIICTIHQPS---------ATLFQMFDQVYLLSGGQ  252 (606)
Q Consensus       209 ~~~~i~~~l~~l~~~g~tii~~~H~~~---------~~i~~~~D~v~~L~~G~  252 (606)
                      .+..+.++++.++++|.|||+++|+..         ..+..+||++++|++|+
T Consensus       392 ~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge  444 (525)
T 1tf7_A          392 FRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE  444 (525)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence            999999999999888999999999971         34567899999998876

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.79  E-value=2.9e-20  Score=217.87  Aligned_cols=155  Identities=15%  Similarity=0.132  Sum_probs=109.3

Q ss_pred             cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHH--------hCCCCCCCccEEEECCccCChhhhcccEEEEccCCC
Q psy13765         47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVL--------SGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDR  118 (606)
Q Consensus        47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L--------~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~  118 (606)
                      +.+.+++|+++++++|++++|+||||||||||||++        .|..-|. .+.               .++.+   + 
T Consensus       647 ~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa-~~~---------------~~~~~---d-  706 (934)
T 3thx_A          647 EIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC-ESA---------------EVSIV---D-  706 (934)
T ss_dssp             -CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE-EEE---------------EEECC---S-
T ss_pred             CceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc-ccc---------------cchHH---H-
Confidence            346799999999999999999999999999999999        4432221 111               01110   0 


Q ss_pred             CCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEE
Q psy13765        119 LQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFL  198 (606)
Q Consensus       119 l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllL  198 (606)
                              +++..+|+.   +....++|++++++..+|+++                           ++ +++|+++||
T Consensus       707 --------~i~~~ig~~---d~l~~~lStf~~e~~~~a~il---------------------------~~-a~~~sLlLL  747 (934)
T 3thx_A          707 --------CILARVGAG---DSQLKGVSTFMAEMLETASIL---------------------------RS-ATKDSLIII  747 (934)
T ss_dssp             --------EEEEECC------------CHHHHHHHHHHHHH---------------------------HH-CCTTCEEEE
T ss_pred             --------HHHHhcCch---hhHHHhHhhhHHHHHHHHHHH---------------------------Hh-ccCCcEEEE
Confidence                    111122322   223345777777777655544                           11 445999999


Q ss_pred             eCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765        199 DEPTTGLDSQSCSQC-IKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL  262 (606)
Q Consensus       199 DEPTsgLD~~~~~~i-~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~  262 (606)
                      ||||+|+|+.....+ ..+++.+++ .|.|+|++||+.+  +.+++|++..+.+|++...++.+++
T Consensus       748 DEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e--l~~lad~~~~v~ng~v~~~~~~~~l  811 (934)
T 3thx_A          748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHE--LTALANQIPTVNNLHVTALTTEETL  811 (934)
T ss_dssp             ESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG--GGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred             eCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH--HHHHhcccceeEeeEEEEEecCCcE
Confidence            999999999999888 677788876 4999999999954  5689999999999999998877654

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.77  E-value=2.6e-22  Score=209.21  Aligned_cols=159  Identities=11%  Similarity=0.055  Sum_probs=106.1

Q ss_pred             EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCcccc
Q psy13765         59 FPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQ  138 (606)
Q Consensus        59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~  138 (606)
                      +++|++++|+||||||||||+++|+|+..+ ..|.              +.+++|+|++.+++. |+.+.+   ++....
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~-~~G~--------------~~v~~v~qd~~~~~~-t~~e~~---~~~~~~  147 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR-WDHH--------------PRVDLVTTDGFLYPN-AELQRR---NLMHRK  147 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHT-STTC--------------CCEEEEEGGGGBCCH-HHHHHT---TCTTCT
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccc-cCCC--------------CeEEEEecCccCCcc-cHHHHH---HHHHhc
Confidence            899999999999999999999999998765 2332              468999999998887 765433   321111


Q ss_pred             CCccccCChH-HHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHH
Q psy13765        139 NTRSSQLSGG-QKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL  217 (606)
Q Consensus       139 ~~~~~~lSgG-qrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l  217 (606)
                           +.... ..+++.-..+.+...   ..+.+...+|+||+||+.+|++++.+|+|||+|||+..+|+..        
T Consensus       148 -----g~~~~~d~~~~~~~L~~l~~~---~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------  211 (312)
T 3aez_A          148 -----GFPESYNRRALMRFVTSVKSG---SDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------  211 (312)
T ss_dssp             -----TSGGGBCHHHHHHHHHHHHTT---CSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------
T ss_pred             -----CCChHHHHHHHHHHHHHhCCC---cccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------
Confidence                 11111 122222122222221   1234556799999999999999999999999999999998621        


Q ss_pred             HHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765        218 KMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ  252 (606)
Q Consensus       218 ~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~  252 (606)
                      ..+.+.=-.+|++.|+.+....+..+|.+.+.+|+
T Consensus       212 ~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~  246 (312)
T 3aez_A          212 LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTA  246 (312)
T ss_dssp             CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred             HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence            11222212346666665555556777877776664

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.77  E-value=6.1e-19  Score=164.10  Aligned_cols=89  Identities=27%  Similarity=0.400  Sum_probs=78.6

Q ss_pred             cCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHH
Q psy13765        138 QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL  217 (606)
Q Consensus       138 ~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l  217 (606)
                      .++++.+||||||||+++|.+|                        +||++|+.+|++++|||||+|||+.++..+.+.+
T Consensus        51 ~~~~~~~LSgGe~qrv~lA~~L------------------------alaral~~~p~lllLDEPt~~LD~~~~~~l~~~l  106 (148)
T 1f2t_B           51 KERPLTFLSGGERIALGLAFRL------------------------AMSLYLAGEISLLILDEPTPYLDEERRRKLITIM  106 (148)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHH------------------------HHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHH
T ss_pred             ccCChhHCCHHHHHHHHHHhhh------------------------HHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHH
Confidence            4567889999999999988654                        3788999999999999999999999999999999


Q ss_pred             HHHHhCCCEEEEEecCCchHHHhhcceeeeec--CCc
Q psy13765        218 KMISQQGRTIICTIHQPSATLFQMFDQVYLLS--GGQ  252 (606)
Q Consensus       218 ~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~--~G~  252 (606)
                      ++++++|+|||++||++.  +.+.||++++|+  +|.
T Consensus       107 ~~~~~~~~tiiivsH~~~--~~~~~d~ii~l~~~~g~  141 (148)
T 1f2t_B          107 ERYLKKIPQVILVSHDEE--LKDAADHVIRISLENGS  141 (148)
T ss_dssp             HHTGGGSSEEEEEESCGG--GGGGCSEEEEEEEETTE
T ss_pred             HHHHccCCEEEEEEChHH--HHHhCCEEEEEEcCCCe
Confidence            999877999999999973  568999999994  554

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.76  E-value=1.7e-19  Score=210.61  Aligned_cols=107  Identities=28%  Similarity=0.509  Sum_probs=84.4

Q ss_pred             HHHHcCCccc-cCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCC
Q psy13765        128 VMSLLGLDES-QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLD  206 (606)
Q Consensus       128 ~l~~~gl~~~-~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD  206 (606)
                      .+..+||.+. .++.+.+|||||||||+||++|..+|+                            |++|+|||||+|||
T Consensus       447 ~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~----------------------------~~lllLDEPT~gLD  498 (916)
T 3pih_A          447 FLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLT----------------------------GVIYVLDEPTIGLH  498 (916)
T ss_dssp             HHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCC----------------------------SCEEEEECTTTTCC
T ss_pred             HHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCC----------------------------CcEEEEECCccCCC
Confidence            3444566543 455666666666666665555555422                            44999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeee------cCCcEEEEcChhHHHH
Q psy13765        207 SQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL------SGGQCLYQGATDQLVN  264 (606)
Q Consensus       207 ~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~~~~~G~~~~~~~  264 (606)
                      +.....++++|++++++|.|||+++||+. .+ ..||++++|      ++|++++.|+++++.+
T Consensus       499 ~~~~~~l~~~L~~L~~~G~TvivVtHd~~-~~-~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~  560 (916)
T 3pih_A          499 PRDTERLIKTLKKLRDLGNTVIVVEHDEE-VI-RNADHIIDIGPGGGTNGGRVVFQGTVDELLK  560 (916)
T ss_dssp             GGGHHHHHHHHHHTTTTTCEEEEECCCHH-HH-HTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence            99999999999999888999999999975 34 569999999      8999999999998764

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.76  E-value=1.7e-19  Score=183.33  Aligned_cols=133  Identities=20%  Similarity=0.383  Sum_probs=96.1

Q ss_pred             ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHH
Q psy13765         50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVM  129 (606)
Q Consensus        50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l  129 (606)
                      ++|+++|  +++|++++|+||||||||||+++|+|+.++..+|+|.++|.+... ..+...++++|.             
T Consensus        15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~-~~~~~~~~v~q~-------------   78 (261)
T 2eyu_A           15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY-VFKHKKSIVNQR-------------   78 (261)
T ss_dssp             THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCS-CCCCSSSEEEEE-------------
T ss_pred             HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCccee-ecCCcceeeeHH-------------
Confidence            4899999  999999999999999999999999998765227999999876431 112223344442             


Q ss_pred             HHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHH
Q psy13765        130 SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQS  209 (606)
Q Consensus       130 ~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~  209 (606)
                       .+|++.      ..+      |++                              ||++|..+|+++++||||   |+.+
T Consensus        79 -~~gl~~------~~l------~~~------------------------------la~aL~~~p~illlDEp~---D~~~  112 (261)
T 2eyu_A           79 -EVGEDT------KSF------ADA------------------------------LRAALREDPDVIFVGEMR---DLET  112 (261)
T ss_dssp             -EBTTTB------SCH------HHH------------------------------HHHHHHHCCSEEEESCCC---SHHH
T ss_pred             -HhCCCH------HHH------HHH------------------------------HHHHHhhCCCEEEeCCCC---CHHH
Confidence             122221      111      455                              455555559999999999   9888


Q ss_pred             HHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765        210 CSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG  250 (606)
Q Consensus       210 ~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~  250 (606)
                      ...++   +. ++.|.+|++++|+.+  ....+||++.|..
T Consensus       113 ~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~  147 (261)
T 2eyu_A          113 VETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP  147 (261)
T ss_dssp             HHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred             HHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence            66543   33 356999999999976  4588999998864

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.75  E-value=9e-20  Score=213.23  Aligned_cols=155  Identities=14%  Similarity=0.132  Sum_probs=103.3

Q ss_pred             ccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHH
Q psy13765         48 PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIEN  127 (606)
Q Consensus        48 ~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~  127 (606)
                      ++.+++|+|+++++|++++|+||||||||||||++++.......|.      .....  ...++.+   +.++       
T Consensus       659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~------~vpa~--~~~i~~~---d~i~-------  720 (918)
T 3thx_B          659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS------YVPAE--EATIGIV---DGIF-------  720 (918)
T ss_dssp             SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTC------CBSSS--EEEEECC---SEEE-------
T ss_pred             CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCc------cccch--hhhhhHH---HHHH-------
Confidence            5689999999999999999999999999999999986421100110      00000  0111111   1122       


Q ss_pred             HHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCH
Q psy13765        128 VMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDS  207 (606)
Q Consensus       128 ~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~  207 (606)
                        ..+|+.+........+|+|++|++.++++ +.                              +|+++||||||+|||+
T Consensus       721 --~~ig~~d~l~~~~stfs~em~~~~~il~~-a~------------------------------~p~LlLLDEP~~GlD~  767 (918)
T 3thx_B          721 --TRMGAADNIYKGRSTFMEELTDTAEIIRK-AT------------------------------SQSLVILDELGRGTST  767 (918)
T ss_dssp             --EEC----------CCHHHHHHHHHHHHHH-CC------------------------------TTCEEEEESTTTTSCH
T ss_pred             --HhCChHHHHHHhHHHhhHHHHHHHHHHHh-cc------------------------------CCCEEEEeCCCCCCCH
Confidence              22344444445566788999988886655 33                              4999999999999999


Q ss_pred             HHHHHHH-HHHHHHHh-CCCEEEEEecCCchHHHhhcceeee-ecCCcEEE
Q psy13765        208 QSCSQCI-KLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYL-LSGGQCLY  255 (606)
Q Consensus       208 ~~~~~i~-~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~-L~~G~~~~  255 (606)
                      .....+. .+++.+++ .|.|+|++||+++  +.+++|+.-- +.++++.+
T Consensus       768 ~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~~~~v~n~~~~~  816 (918)
T 3thx_B          768 HDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNYSHQVGNYHMGF  816 (918)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHTTTTEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhcccceEEEEEEE
Confidence            9999997 77888876 5999999999965  4577887642 55555544

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.75  E-value=4.1e-19  Score=178.39  Aligned_cols=177  Identities=14%  Similarity=0.125  Sum_probs=105.6

Q ss_pred             cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHH
Q psy13765         47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIE  126 (606)
Q Consensus        47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~  126 (606)
                      +++.+|+|+||++++|+++||+||||||||||+++|+|+.     |.+.++       ..++.++|++|++ +++.+|+.
T Consensus        10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-----G~~~~~-------~~~~~i~~v~~d~-~~~~l~~~   76 (245)
T 2jeo_A           10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-----GQNEVE-------QRQRKVVILSQDR-FYKVLTAE   76 (245)
T ss_dssp             -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-----TGGGSC-------GGGCSEEEEEGGG-GBCCCCHH
T ss_pred             CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-----chhccc-------ccCCceEEEeCCc-CccccCHh
Confidence            5678999999999999999999999999999999999964     333333       3467799999995 67788987


Q ss_pred             HHHHHc-CCccccCCccccCChHHHHHH-HHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCC
Q psy13765        127 NVMSLL-GLDESQNTRSSQLSGGQKKRL-SIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTG  204 (606)
Q Consensus       127 ~~l~~~-gl~~~~~~~~~~lSgGqrqRv-~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsg  204 (606)
                      +.+... +.....+  .....   .+++ .....+ .++    .+.+...+|+||+||+.+ ++++.+|+++++|||...
T Consensus        77 ~~~~~~~~~~~~~~--~~~~~---~~~~~~~L~~l-~~~----~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~  145 (245)
T 2jeo_A           77 QKAKALKGQYNFDH--PDAFD---NDLMHRTLKNI-VEG----KTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVF  145 (245)
T ss_dssp             HHHHHHTTCCCTTS--GGGBC---HHHHHHHHHHH-HTT----CCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTT
T ss_pred             HhhhhhccCCCCCC--ccccc---HHHHHHHHHHH-HCC----CCeecccccccccCccCc-eEEecCCCEEEEeCcccc
Confidence            765432 2111111  01111   1111 111223 222    345667899999999988 688999999999999888


Q ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHHH
Q psy13765        205 LDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNY  265 (606)
Q Consensus       205 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~~  265 (606)
                      .|..        +.++  .+.+|++++|+.......+++++   ++|+     +.+++.+.
T Consensus       146 ~~~~--------l~~~--~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~~  188 (245)
T 2jeo_A          146 YSQE--------IRDM--FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILTQ  188 (245)
T ss_dssp             TSHH--------HHTT--CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHHH
T ss_pred             ccHH--------HHHh--cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHHH
Confidence            8763        2222  37899999997432222334444   6664     56666543

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.73  E-value=4e-19  Score=174.72  Aligned_cols=167  Identities=13%  Similarity=0.039  Sum_probs=106.8

Q ss_pred             cccceeeeE-EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcc---cEEEEccCCCCCCCCc
Q psy13765         49 KDVLKNLCG-RFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR---VSCYIQQDDRLQPLLT  124 (606)
Q Consensus        49 ~~iL~~vs~-~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~---~~~yv~Q~~~l~~~lt  124 (606)
                      .+.|+++.+ .+++|++++|+||||||||||++.|++...+ ..|.|.+.+.+.....+++   ..++.+|+.... .+.
T Consensus         9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   86 (235)
T 2w0m_A            9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR-DGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLI   86 (235)
T ss_dssp             CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH-HTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEE
T ss_pred             chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH-CCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEE
Confidence            457888885 8999999999999999999999999986543 2577777665443322221   233333321110 000


Q ss_pred             -HHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCc--EEEEeCC
Q psy13765        125 -IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPR--VMFLDEP  201 (606)
Q Consensus       125 -v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~--lllLDEP  201 (606)
                       ++......+ ..   ......|.++.++...+.                              +...+|+  ++++|||
T Consensus        87 ~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~llilDe~  132 (235)
T 2w0m_A           87 IIDALMKEKE-DQ---WSLVNLTPEELVNKVIEA------------------------------KQKLGYGKARLVIDSV  132 (235)
T ss_dssp             EEECCC-----CT---TBCSSCCHHHHHHHHHHH------------------------------HHHHCSSCEEEEEETG
T ss_pred             EEeccccccC-ce---eeecCCCHHHHHHHHHHH------------------------------HHhhCCCceEEEEECc
Confidence             000000001 00   011223666655544333                              3334599  9999999


Q ss_pred             CCCC--CHHHHHHHHHHHHHHHh-CCCEEEEEecCCc-------hHHHhhcceeeeecCC
Q psy13765        202 TTGL--DSQSCSQCIKLLKMISQ-QGRTIICTIHQPS-------ATLFQMFDQVYLLSGG  251 (606)
Q Consensus       202 TsgL--D~~~~~~i~~~l~~l~~-~g~tii~~~H~~~-------~~i~~~~D~v~~L~~G  251 (606)
                      |+++  |+....++++.|+++++ .|.|||+++|+..       ..+.+.||++++|++.
T Consensus       133 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~  192 (235)
T 2w0m_A          133 SALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM  192 (235)
T ss_dssp             GGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred             hHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence            9887  99999999999999975 5999999999972       2477899999999753

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.72  E-value=1.7e-18  Score=170.42  Aligned_cols=157  Identities=15%  Similarity=0.158  Sum_probs=100.5

Q ss_pred             EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC-C-----CccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHH
Q psy13765         57 GRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN-G-----VTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMS  130 (606)
Q Consensus        57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~-~-----~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~  130 (606)
                      +-+++||+++|+||||||||||+++|+|...+ .     ..|.+++++.....   .+.+++++|+..+.+.    ++.+
T Consensus        20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~----~~~~   92 (231)
T 4a74_A           20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD----EVLK   92 (231)
T ss_dssp             SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH----HHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH----HHhh
Confidence            47999999999999999999999999995332 1     24578887754211   1235556666554432    3333


Q ss_pred             HcCCccccCCccccCChHHH-HHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhh--hcCCcEEEEeCCCCCCCH
Q psy13765        131 LLGLDESQNTRSSQLSGGQK-KRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL--INNPRVMFLDEPTTGLDS  207 (606)
Q Consensus       131 ~~gl~~~~~~~~~~lSgGqr-qRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL--~~~P~lllLDEPTsgLD~  207 (606)
                      .+.+       ....+++++ +.+..+.+++.                         +++  ..+|+++++||||+++|+
T Consensus        93 ~~~~-------~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~llilDe~~~~l~~  140 (231)
T 4a74_A           93 HIYV-------ARAFNSNHQMLLVQQAEDKIK-------------------------ELLNTDRPVKLLIVDSLTSHFRS  140 (231)
T ss_dssp             TEEE-------EECCSHHHHHHHHHHHHHHHH-------------------------HHTTSSSCEEEEEEETSSHHHHH
T ss_pred             cEEE-------EecCChHHHHHHHHHHHHHHH-------------------------HhcccCCceeEEEECChHHHhcc
Confidence            2221       112344443 33444444443                         111  346999999999999998


Q ss_pred             HH------------HHHHHHHHHHHHh-CCCEEEEEecCCch---HHHhhcceeeeecCCc
Q psy13765        208 QS------------CSQCIKLLKMISQ-QGRTIICTIHQPSA---TLFQMFDQVYLLSGGQ  252 (606)
Q Consensus       208 ~~------------~~~i~~~l~~l~~-~g~tii~~~H~~~~---~i~~~~D~v~~L~~G~  252 (606)
                      ..            ..++++.|+++++ .|.|||+++|....   .+...+|+++.|++|+
T Consensus       141 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~  201 (231)
T 4a74_A          141 EYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK  201 (231)
T ss_dssp             HSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred             ccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence            42            2367888888865 49999999995331   3668899999998753

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.70  E-value=2.1e-17  Score=192.03  Aligned_cols=95  Identities=22%  Similarity=0.388  Sum_probs=87.5

Q ss_pred             ccCCCCCCCCchhhhHHHHHHhhhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcce
Q psy13765        167 FLDEPTTSNPNDQKKRLSIALELINNP--RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQ  244 (606)
Q Consensus       167 ~~de~~~~~s~g~~krl~IA~aL~~~P--~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~  244 (606)
                      -+|.++..|||||||||.||++|..+|  ++|+|||||+|||+.....+.++|++|++.|.|||+++|++. .+ +.||+
T Consensus       497 ~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~i-~~ADr  574 (972)
T 2r6f_A          497 TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED-TM-LAADY  574 (972)
T ss_dssp             BSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH-HH-HSCSE
T ss_pred             ccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCE
Confidence            378999999999999999999999985  999999999999999999999999999888999999999975 34 68999


Q ss_pred             eeee------cCCcEEEEcChhHHH
Q psy13765        245 VYLL------SGGQCLYQGATDQLV  263 (606)
Q Consensus       245 v~~L------~~G~~~~~G~~~~~~  263 (606)
                      |++|      ++|++++.|+++++.
T Consensus       575 Ii~LgpgaG~~gG~iv~~G~~~e~~  599 (972)
T 2r6f_A          575 LIDIGPGAGIHGGEVVAAGTPEEVM  599 (972)
T ss_dssp             EEEECSSSGGGCCSEEEEECTTTTT
T ss_pred             EEEeCCCccCCCCEEEEecCHHHHH
Confidence            9999      799999999998764

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.69  E-value=3.9e-18  Score=196.57  Aligned_cols=150  Identities=18%  Similarity=0.118  Sum_probs=102.5

Q ss_pred             cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHH
Q psy13765         47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIE  126 (606)
Q Consensus        47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~  126 (606)
                      +++.+++|+|++   |++++|+||||||||||||+|+|+......|.+.      .  ..+..+++++|   +++.+++.
T Consensus       564 ~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v------p--a~~~~i~~v~~---i~~~~~~~  629 (765)
T 1ewq_A          564 RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV------P--AEEAHLPLFDG---IYTRIGAS  629 (765)
T ss_dssp             TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB------S--SSEEEECCCSE---EEEECCC-
T ss_pred             CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee------e--hhccceeeHHH---hhccCCHH
Confidence            346799999998   9999999999999999999999975311245432      1  12345788776   45555554


Q ss_pred             HHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCC---CC
Q psy13765        127 NVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP---TT  203 (606)
Q Consensus       127 ~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEP---Ts  203 (606)
                      +.+            ..++|+|+++++.+++++-                            .+++|++++||||   |+
T Consensus       630 d~l------------~~g~S~~~~e~~~la~il~----------------------------~a~~p~LlLLDEpgrGTs  669 (765)
T 1ewq_A          630 DDL------------AGGKSTFMVEMEEVALILK----------------------------EATENSLVLLDEVGRGTS  669 (765)
T ss_dssp             -----------------CCSHHHHHHHHHHHHHH----------------------------HCCTTEEEEEESTTTTSC
T ss_pred             HHH------------HhcccHHHHHHHHHHHHHH----------------------------hccCCCEEEEECCCCCCC
Confidence            322            2346888888887665550                            1445999999999   99


Q ss_pred             CCCHHHH-HHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        204 GLDSQSC-SQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       204 gLD~~~~-~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      +||..+. ..+++.|++   .|.|+|++||+.+  +.+++  .--+.++++....
T Consensus       670 ~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~--l~~~~--~~~v~n~~~~~~~  717 (765)
T 1ewq_A          670 SLDGVAIATAVAEALHE---RRAYTLFATHYFE--LTALG--LPRLKNLHVAARE  717 (765)
T ss_dssp             HHHHHHHHHHHHHHHHH---HTCEEEEECCCHH--HHTCC--CTTEEEEEEEEEC
T ss_pred             CcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH--HHHhh--hhcceEEEEEEEE
Confidence            9998875 567777765   5899999999954  34554  2233444444443

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.69  E-value=2.8e-18  Score=181.51  Aligned_cols=171  Identities=18%  Similarity=0.189  Sum_probs=111.6

Q ss_pred             cceee-eEEEeCCeEEEEECCCCCCHHHHHHHHhCCC--CCCC---ccE-EEECCccCChhhhcccEEEEccCCCCCCCC
Q psy13765         51 VLKNL-CGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR--SNGV---TGQ-ILTNGHSRNINAFRRVSCYIQQDDRLQPLL  123 (606)
Q Consensus        51 iL~~v-s~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~--~~~~---~G~-I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~l  123 (606)
                      .|+++ ++.+++|++++|+||||||||||++.|++..  ++..   .|+ |++++....   .++++++++|+..+.+. 
T Consensus       119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~-  194 (349)
T 1pzn_A          119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-  194 (349)
T ss_dssp             HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-
T ss_pred             HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-
Confidence            46665 6899999999999999999999999999976  3321   368 899986531   13457778887665432 


Q ss_pred             cHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCC
Q psy13765        124 TIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTT  203 (606)
Q Consensus       124 tv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTs  203 (606)
                         .+++.+.+...      .-|.+++|++.++++++..            +|+||           .+|+++++||||+
T Consensus       195 ---~v~~ni~~~~~------~~~~~~~~~l~~~~~~~~~------------lS~G~-----------~~~~llIlDs~ta  242 (349)
T 1pzn_A          195 ---EVLKHIYVARA------FNSNHQMLLVQQAEDKIKE------------LLNTD-----------RPVKLLIVDSLTS  242 (349)
T ss_dssp             ---HHGGGEEEEEC------CSHHHHHHHHHHHHHHHHH------------SSSSS-----------SCEEEEEEETSST
T ss_pred             ---HHhhCEEEEec------CChHHHHHHHHHHHHHHHH------------hcccc-----------CCCCEEEEeCchH
Confidence               33322221111      1257888888888887754            45665           5699999999999


Q ss_pred             CCCHHH------------HHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        204 GLDSQS------------CSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       204 gLD~~~------------~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      ++|+..            ..++++.|+++++ .|.|||+++|... .....++......+|+++.++.
T Consensus       243 ~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~  309 (349)
T 1pzn_A          243 HFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSA  309 (349)
T ss_dssp             THHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred             hhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecC
Confidence            999852            3566777777766 4899999999865 3333455556666676655544

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.69  E-value=5.1e-19  Score=171.34  Aligned_cols=155  Identities=15%  Similarity=0.141  Sum_probs=102.9

Q ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCc-----
Q psy13765         62 NQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLD-----  135 (606)
Q Consensus        62 Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~-~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~-----  135 (606)
                      |++++|+||||||||||+++|+|+.+  .+| |.++|.... ...+++.+||++|+..  ...   +.+..++..     
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~--~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g~~---~~l~~~~~~~~~~~   72 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK--SSG-VPVDGFYTEEVRQGGRRIGFDVVTLS--GTR---GPLSRVGLEPPPGK   72 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH--HTT-CCCEEEECCEEETTSSEEEEEEEETT--SCE---EEEEECCCCCCSSS
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc--cCC-EEEcCEecchhHhhhceEEEEEEecc--cce---ehhhcccccCCccc
Confidence            78999999999999999999999876  378 988886543 2345788999999751  111   111111111     


Q ss_pred             --cccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeC--CCCCCCHHHHH
Q psy13765        136 --ESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDE--PTTGLDSQSCS  211 (606)
Q Consensus       136 --~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDE--PTsgLD~~~~~  211 (606)
                        ...++....+|+|||+++....    .                      +|+|++.+|+++++||  ||..+|.....
T Consensus        73 ~~~~v~~~~~~ls~~er~~~~~l~----~----------------------~a~A~~~~~dvlilDE~g~~~~~~~~~~~  126 (189)
T 2i3b_A           73 RECRVGQYVVDLTSFEQLALPVLR----N----------------------ADCSSGPGQRVCVIDEIGKMELFSQLFIQ  126 (189)
T ss_dssp             CCEESSSSEECHHHHHTTTTTTTC----C----------------------CCCCCSSCCCCEEECCCSTTTTTCSHHHH
T ss_pred             cccccceEEEcchHHHHHHHHHHh----h----------------------hhHhhccCCCEEEEeCCCccccccHHHHH
Confidence              1223334468888887663100    0                      1125677899999999  89989987655


Q ss_pred             HHHHHHHHHHhCCCEEEE----EecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765        212 QCIKLLKMISQQGRTIIC----TIHQPSATLFQMFDQVYLLSGGQCLYQG  257 (606)
Q Consensus       212 ~i~~~l~~l~~~g~tii~----~~H~~~~~i~~~~D~v~~L~~G~~~~~G  257 (606)
                      .+.+++    +...++|+    ++|+.+   ..+.|++..+.+|+++...
T Consensus       127 ~l~~~l----~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~  169 (189)
T 2i3b_A          127 AVRQTL----STPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT  169 (189)
T ss_dssp             HHHHHH----HCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred             HHHHHH----hCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence            444444    44455553    238864   2578999999999988754

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.69  E-value=3.9e-18  Score=197.64  Aligned_cols=159  Identities=11%  Similarity=0.045  Sum_probs=107.8

Q ss_pred             cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHH
Q psy13765         47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIE  126 (606)
Q Consensus        47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~  126 (606)
                      +++.+++|+|++ ++|++++|+||||||||||||+|+|.......|      .....  -+..+++++|   +++.+++.
T Consensus       593 ~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa--~~~~i~~~~~---i~~~~~~~  660 (800)
T 1wb9_A          593 NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA--QKVEIGPIDR---IFTRVGAA  660 (800)
T ss_dssp             SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS--SEEEECCCCE---EEEEEC--
T ss_pred             CCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch--hcccceeHHH---HHhhCCHH
Confidence            346799999999 999999999999999999999999963211122      11111  1234566555   44444443


Q ss_pred             HHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCC
Q psy13765        127 NVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLD  206 (606)
Q Consensus       127 ~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD  206 (606)
                      +.+.         .....+|+++++ ++.+..                              .+++|++++||||++|+|
T Consensus       661 d~l~---------~~~stf~~e~~~-~~~il~------------------------------~a~~psLlLLDEp~~Gtd  700 (800)
T 1wb9_A          661 DDLA---------SGRSTFMVEMTE-TANILH------------------------------NATEYSLVLMDEIGRGTS  700 (800)
T ss_dssp             ------------------CHHHHHH-HHHHHH------------------------------HCCTTEEEEEESCCCCSS
T ss_pred             HHHH---------hhhhhhhHHHHH-HHHHHH------------------------------hccCCCEEEEECCCCCCC
Confidence            3221         122345666654 332222                              244599999999999999


Q ss_pred             HHHHHHH-HHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765        207 SQSCSQC-IKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT  259 (606)
Q Consensus       207 ~~~~~~i-~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~  259 (606)
                      +.....+ ..+++.+++ .|.|+|++||+++  +..++|++..+.+|++.+....
T Consensus       701 ~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n~~~~~~~~~  753 (800)
T 1wb9_A          701 TYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVANVHLDALEHG  753 (800)
T ss_dssp             SSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEEEEEEEEEET
T ss_pred             hhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEEEEEEEEEcC
Confidence            9887775 788888887 4999999999975  3578999988888888766543

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.68  E-value=7.7e-17  Score=186.87  Aligned_cols=94  Identities=27%  Similarity=0.443  Sum_probs=86.8

Q ss_pred             cCCCCCCCCchhhhHHHHHHhhhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhccee
Q psy13765        168 LDEPTTSNPNDQKKRLSIALELINNP--RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQV  245 (606)
Q Consensus       168 ~de~~~~~s~g~~krl~IA~aL~~~P--~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v  245 (606)
                      +|.++..|||||||||.||++|+.+|  ++|+|||||+|||+.....+.++|++|+++|.|||+++|++.  +.+.||+|
T Consensus       373 l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~--~l~~aD~i  450 (842)
T 2vf7_A          373 LDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLD--VIRRADWL  450 (842)
T ss_dssp             TTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH--HHTTCSEE
T ss_pred             ccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEE
Confidence            68889999999999999999999999  599999999999999999999999999988999999999975  45789999


Q ss_pred             eee------cCCcEEEEcChhHHH
Q psy13765        246 YLL------SGGQCLYQGATDQLV  263 (606)
Q Consensus       246 ~~L------~~G~~~~~G~~~~~~  263 (606)
                      ++|      ++|++++.|+++++.
T Consensus       451 i~lgpgaG~~~G~iv~~g~~~~~~  474 (842)
T 2vf7_A          451 VDVGPEAGEKGGEILYSGPPEGLK  474 (842)
T ss_dssp             EEECSSSGGGCCSEEEEECGGGGG
T ss_pred             EEeCCCcccCCCEEEEecCHHHHH
Confidence            999      799999999998764

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.68  E-value=1.7e-16  Score=172.28  Aligned_cols=76  Identities=16%  Similarity=0.166  Sum_probs=68.8

Q ss_pred             CCCCCchhhhHHHHHHhhh----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeee
Q psy13765        172 TTSNPNDQKKRLSIALELI----NNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYL  247 (606)
Q Consensus       172 ~~~~s~g~~krl~IA~aL~----~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~  247 (606)
                      ...+|||||||+.||++|+    .+|++++|||||++||+..+..+.+.|+++.++|.++|+++|++  .....||+++.
T Consensus       331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~  408 (430)
T 1w1w_A          331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVG  408 (430)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEE
T ss_pred             cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEE
Confidence            3458999999999999999    68999999999999999999999999999876688999999994  35688999999


Q ss_pred             ec
Q psy13765        248 LS  249 (606)
Q Consensus       248 L~  249 (606)
                      +.
T Consensus       409 ~~  410 (430)
T 1w1w_A          409 VY  410 (430)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.68  E-value=8.6e-19  Score=181.79  Aligned_cols=157  Identities=13%  Similarity=0.087  Sum_probs=81.4

Q ss_pred             cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCC-CCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcH
Q psy13765         47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY-RSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTI  125 (606)
Q Consensus        47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~-~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv  125 (606)
                      +++.+++|++++|      +|+||||+|||||+|.|+|. ..+ .+| |.++|.+.....-.+.+++++|++.....+|+
T Consensus         9 ~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~-~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv   80 (301)
T 2qnr_A            9 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP-ERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTV   80 (301)
T ss_dssp             ---------CEEE------EEEEETTSSHHHHHHHHHC--------------------------CEEEEC---CCEEEEE
T ss_pred             CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccC-CCC-cccCCcccCCcceEeeEEEEecCCCcccCcch
Confidence            4578999999998      99999999999999999997 444 478 88888664332223568899998877777765


Q ss_pred             HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCC-
Q psy13765        126 ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTG-  204 (606)
Q Consensus       126 ~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsg-  204 (606)
                      .+...   .....+.       .++.+ .+...+..     ..+.....+|+|+|||+.+|+|++    ++++||||++ 
T Consensus        81 ~Dt~g---~~~~~~~-------~e~~~-~l~~~l~~-----~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~  140 (301)
T 2qnr_A           81 VDTPG---YGDAINC-------RDCFK-TIISYIDE-----QFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHG  140 (301)
T ss_dssp             EEEC---------------------CT-THHHHHHH-----HHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSS
T ss_pred             hhhhh---hhhhcCc-------HHHHH-HHHHHHHH-----HHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccC
Confidence            43221   1100000       00000 01110000     012233457899999999999875    9999999985 


Q ss_pred             CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCc
Q psy13765        205 LDSQSCSQCIKLLKMISQQ-GRTIICTIHQPS  235 (606)
Q Consensus       205 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~  235 (606)
                      ||+...    +.++++.++ +.++|++.||..
T Consensus       141 Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A          141 LKPLDV----AFMKAIHNKVNIVPVIAKADTL  168 (301)
T ss_dssp             CCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred             CCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence            999873    566666654 789999999965

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.67  E-value=3.2e-19  Score=174.22  Aligned_cols=146  Identities=15%  Similarity=0.166  Sum_probs=104.7

Q ss_pred             EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCC--CCCcHHHHHHHcCCcc
Q psy13765         59 FPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQ--PLLTIENVMSLLGLDE  136 (606)
Q Consensus        59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~--~~ltv~~~l~~~gl~~  136 (606)
                      .++|++++|+||||||||||+++|+|+..+                    .++|++|++.++  ..+++.+.... ....
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--------------------~i~~v~~d~~~~~~~~~~~~~~~~~-~~~~   61 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGE--------------------RVALLPMDHYYKDLGHLPLEERLRV-NYDH   61 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGG--------------------GEEEEEGGGCBCCCTTSCHHHHHHS-CTTS
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--------------------CeEEEecCccccCcccccHHHhcCC-CCCC
Confidence            478999999999999999999999997431                    589999998876  45676544322 1110


Q ss_pred             ccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchh----hhHHHHHHhhhcCCcEEEEeCCCCC-------C
Q psy13765        137 SQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQ----KKRLSIALELINNPRVMFLDEPTTG-------L  205 (606)
Q Consensus       137 ~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~----~krl~IA~aL~~~P~lllLDEPTsg-------L  205 (606)
                           ....   .++++.-+.+.+...+  ..+.|....|+|+    +||+.+|++++.+|+++++||||++       |
T Consensus        62 -----~~~~---~~~~~~~~l~~~~~~~--~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l  131 (211)
T 3asz_A           62 -----PDAF---DLALYLEHAQALLRGL--PVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV  131 (211)
T ss_dssp             -----GGGB---CHHHHHHHHHHHHTTC--CEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred             -----hhhh---hHHHHHHHHHHHHcCC--CcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence                 0111   1233322222222211  2355777788886    4788999999999999999999999       9


Q ss_pred             CHHHHHHHHHHHHHH-HhCCCEEEEEecCCc
Q psy13765        206 DSQSCSQCIKLLKMI-SQQGRTIICTIHQPS  235 (606)
Q Consensus       206 D~~~~~~i~~~l~~l-~~~g~tii~~~H~~~  235 (606)
                      |+.....+.+.+++. +++|+|++.++|+..
T Consensus       132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~  162 (211)
T 3asz_A          132 DADADERFIRRLKRDVLERGRSLEGVVAQYL  162 (211)
T ss_dssp             ECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             eCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            999999999999876 456999999999743

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.66  E-value=4.7e-18  Score=192.27  Aligned_cols=193  Identities=15%  Similarity=0.208  Sum_probs=115.0

Q ss_pred             EEEEEeeEEEEecCCcccccccccceee----------eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEEC
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNL----------CGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTN   97 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~v----------s~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~   97 (606)
                      .++++||+..|+.      ..+++|+.+          +++++.   ++|+|||||||||||++|+|+..|..+|.|.++
T Consensus        10 ~i~~~~l~~~~~~------~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~   80 (608)
T 3szr_A           10 SVAENNLCSQYEE------KVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRC   80 (608)
T ss_dssp             ----------CHH------HHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCS
T ss_pred             hhhhhhhhHHHHH------HHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEc
Confidence            5788999988642      123344433          355554   999999999999999999999765348999999


Q ss_pred             CccCC------hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCC
Q psy13765         98 GHSRN------INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEP  171 (606)
Q Consensus        98 G~~~~------~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~  171 (606)
                      |.+..      ...+++.++|++|++.+++.+||.+.+.....                        .....        
T Consensus        81 g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~------------------------~~~~~--------  128 (608)
T 3szr_A           81 PLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQN------------------------AIAGE--------  128 (608)
T ss_dssp             CEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHH------------------------HHHCS--------
T ss_pred             CEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHH------------------------HhcCC--------
Confidence            97631      24567889999999999998888665543100                        00000        


Q ss_pred             CCCCCchhhhHHHHHHhhhcCCcEEEEeCC------CCCCCHHHHHHHHHHHHHHHh--CCCEEEEEecCCch------H
Q psy13765        172 TTSNPNDQKKRLSIALELINNPRVMFLDEP------TTGLDSQSCSQCIKLLKMISQ--QGRTIICTIHQPSA------T  237 (606)
Q Consensus       172 ~~~~s~g~~krl~IA~aL~~~P~lllLDEP------TsgLD~~~~~~i~~~l~~l~~--~g~tii~~~H~~~~------~  237 (606)
                         -.+..++++.++.+...+|+++++|||      |+|||+.....+.++++++.+  .+.++++++|+.+.      .
T Consensus       129 ---~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~  205 (608)
T 3szr_A          129 ---GMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALS  205 (608)
T ss_dssp             ---SSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHH
T ss_pred             ---ccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHH
Confidence               000111223344445556999999999      999999999999999999754  36788999998752      1


Q ss_pred             HHhhc-----ceeeeecCCcEEEEcChhHHHH
Q psy13765        238 LFQMF-----DQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       238 i~~~~-----D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      +.+..     ..|.++.++..+..|+.+++.+
T Consensus       206 la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~  237 (608)
T 3szr_A          206 MAQEVDPEGDRTIGILTKPDLVDKGTEDKVVD  237 (608)
T ss_dssp             HHHHHCSSCCSEEEEEECGGGSSSSSTTCCCC
T ss_pred             HHHHHhhcCCceEEEecchhhcCcccHHHHHH
Confidence            22222     3467778888777777654443

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.66  E-value=4.3e-17  Score=172.71  Aligned_cols=128  Identities=23%  Similarity=0.364  Sum_probs=91.1

Q ss_pred             EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccc
Q psy13765         58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDES  137 (606)
Q Consensus        58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~  137 (606)
                      ...+|++++|+|||||||||||++|+|..++...|.|...+.+... ..+...++++|.+......+..+          
T Consensus       119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~~~~~~~----------  187 (356)
T 3jvv_A          119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEF-VHESKKCLVNQREVHRDTLGFSE----------  187 (356)
T ss_dssp             HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCS-CCCCSSSEEEEEEBTTTBSCHHH----------
T ss_pred             HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHh-hhhccccceeeeeeccccCCHHH----------
Confidence            6789999999999999999999999998765325777655544321 22334456666544333233222          


Q ss_pred             cCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHH
Q psy13765        138 QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL  217 (606)
Q Consensus       138 ~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l  217 (606)
                                      +                              ||+||..+|++|++||||   |..+    .+.+
T Consensus       188 ----------------~------------------------------La~aL~~~PdvillDEp~---d~e~----~~~~  214 (356)
T 3jvv_A          188 ----------------A------------------------------LRSALREDPDIILVGEMR---DLET----IRLA  214 (356)
T ss_dssp             ----------------H------------------------------HHHHTTSCCSEEEESCCC---SHHH----HHHH
T ss_pred             ----------------H------------------------------HHHHhhhCcCEEecCCCC---CHHH----HHHH
Confidence                            4                              556666669999999999   6555    4444


Q ss_pred             HHHHhCCCEEEEEecCCchHHHhhcceeeeecCC
Q psy13765        218 KMISQQGRTIICTIHQPSATLFQMFDQVYLLSGG  251 (606)
Q Consensus       218 ~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G  251 (606)
                      .+++++|.||++|+|+.+. + +.+||++.|..|
T Consensus       215 ~~~~~~G~~vl~t~H~~~~-~-~~~dRli~l~~~  246 (356)
T 3jvv_A          215 LTAAETGHLVFGTLHTTSA-A-KTIDRVVDVFPA  246 (356)
T ss_dssp             HHHHHTTCEEEEEESCSSH-H-HHHHHHHHTSCH
T ss_pred             HHHHhcCCEEEEEEccChH-H-HHHHHHhhhcCc
Confidence            5556779999999999874 4 889999999654

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.65  E-value=4.7e-17  Score=168.86  Aligned_cols=143  Identities=15%  Similarity=0.206  Sum_probs=97.2

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-------hhh--cccEEEEccCCCCCCCCcHHHHHHH
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-------NAF--RRVSCYIQQDDRLQPLLTIENVMSL  131 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-------~~~--~~~~~yv~Q~~~l~~~ltv~~~l~~  131 (606)
                      +|++++|+||||||||||+++|+|+..+ .+|+|.++|.+...       ..+  ++.++|++|++.+.|..++.+.+..
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~-~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~  179 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN-LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA  179 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHT-TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHh-cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence            7999999999999999999999999876 48999999986421       112  3468999999988887777655432


Q ss_pred             cCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCC------CCchhhhHHHHHHhhhcCCcEEEEeCCCCCC
Q psy13765        132 LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS------NPNDQKKRLSIALELINNPRVMFLDEPTTGL  205 (606)
Q Consensus       132 ~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~------~s~g~~krl~IA~aL~~~P~lllLDEPTsgL  205 (606)
                      ...                          .+.++.++|.+...      .+..++||+.||||++.+|+.++|     .|
T Consensus       180 ~~~--------------------------~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vL  228 (304)
T 1rj9_A          180 MKA--------------------------RGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWL-----VL  228 (304)
T ss_dssp             HHH--------------------------HTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EE
T ss_pred             HHh--------------------------CCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EE
Confidence            100                          01111122211110      122345666677777777994444     45


Q ss_pred             CHHHHHHHHHHHHHHHhC-CCEEEEEecCCc
Q psy13765        206 DSQSCSQCIKLLKMISQQ-GRTIICTIHQPS  235 (606)
Q Consensus       206 D~~~~~~i~~~l~~l~~~-g~tii~~~H~~~  235 (606)
                      |+.+..++++.++++.++ |.|+|++||+..
T Consensus       229 Da~t~~~~~~~~~~~~~~~~~t~iivTh~d~  259 (304)
T 1rj9_A          229 DAVTGQNGLEQAKKFHEAVGLTGVIVTKLDG  259 (304)
T ss_dssp             ETTBCTHHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred             cHHHHHHHHHHHHHHHHHcCCcEEEEECCcc
Confidence            555556677777887764 999999999854

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.62  E-value=2.8e-17  Score=159.47  Aligned_cols=181  Identities=14%  Similarity=0.095  Sum_probs=90.1

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC-----CCCCccEEEECCcc-C
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR-----SNGVTGQILTNGHS-R  101 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~-----~~~~~G~I~~~G~~-~  101 (606)
                      .|+++|+++.|.         ..++++  +.+++|+.++|+|+||||||||+|.|+|..     .+ ..|++...+.. .
T Consensus         3 ~l~~~~~~~~~~---------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~-~~G~~~~~~~~~~   70 (210)
T 1pui_A            3 NLNYQQTHFVMS---------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSK-TPGRTQLINLFEV   70 (210)
T ss_dssp             --------CEEE---------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEEE
T ss_pred             chhhhhhhheee---------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccC-CCccceeeEEEEe
Confidence            378999999873         257887  889999999999999999999999999976     33 35554432110 0


Q ss_pred             -ChhhhcccEEEEccCCCCCCCCc-------HHHHHHHcCCcc----ccCCccccCChHHHHHHHHHHHHhcCCcccccC
Q psy13765        102 -NINAFRRVSCYIQQDDRLQPLLT-------IENVMSLLGLDE----SQNTRSSQLSGGQKKRLSIALELINNPRVMFLD  169 (606)
Q Consensus       102 -~~~~~~~~~~yv~Q~~~l~~~lt-------v~~~l~~~gl~~----~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~d  169 (606)
                       ....+....|+..++   .+...       +...++.....+    ..|. ....+. +.+++.-.......| +++..
T Consensus        71 ~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~~-~~~~~~~~~~~~~~~-~~~v~  144 (210)
T 1pui_A           71 ADGKRLVDLPGYGYAE---VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDI-RHPLKD-LDQQMIEWAVDSNIA-VLVLL  144 (210)
T ss_dssp             ETTEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEET-TSCCCH-HHHHHHHHHHHTTCC-EEEEE
T ss_pred             cCCEEEEECcCCcccc---cCHHHHHHHHHHHHHHHHhhhcccEEEEEEEC-CCCCch-hHHHHHHHHHHcCCC-eEEEE
Confidence             000000000110000   00000       011111100000    0000 001222 112221111112222 23334


Q ss_pred             CCCCCCCchhhhH-HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy13765        170 EPTTSNPNDQKKR-LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRT  226 (606)
Q Consensus       170 e~~~~~s~g~~kr-l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~t  226 (606)
                      .....+|+||||| +..+++++.+|+++++|||||++|.....++.+.|.++.++|.|
T Consensus       145 nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~  202 (210)
T 1pui_A          145 TKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP  202 (210)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred             ecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence            4455677788777 67888888889999999999999999999999999998766644

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.60  E-value=2.9e-16  Score=160.53  Aligned_cols=138  Identities=19%  Similarity=0.165  Sum_probs=88.4

Q ss_pred             EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCC-------------Cc
Q psy13765         58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPL-------------LT  124 (606)
Q Consensus        58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~-------------lt  124 (606)
                      .+++|++++|+||||||||||++.+++...   .|++. .|.....   ...+.|+..++.....             ..
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~---~g~~~-~g~~~~~---~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~   98 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA---GGPDL-LEVGELP---TGPVIYLPAEDPPTAIHHRLHALGAHLSAEE   98 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHH---TCCCT-TCCCCCC---CCCEEEEESSSCHHHHHHHHHHHHTTSCHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHh---cCCCc-CCCccCC---CccEEEEECCCCHHHHHHHHHHHHhhcChhh
Confidence            589999999999999999999999998532   34442 3432211   2346676655432100             00


Q ss_pred             HHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCC-
Q psy13765        125 IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTT-  203 (606)
Q Consensus       125 v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTs-  203 (606)
                      .+++++.+++.+..                              +.+...+|+||++++   ++++.+|+++++||||+ 
T Consensus        99 ~~~~~~~l~l~~~~------------------------------~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~  145 (279)
T 1nlf_A           99 RQAVADGLLIQPLI------------------------------GSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRF  145 (279)
T ss_dssp             HHHHHHHEEECCCT------------------------------TSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGG
T ss_pred             hhhccCceEEeecC------------------------------CCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHh
Confidence            11222333333333                              334444555554432   45566799999999999 


Q ss_pred             -CCCHHHH---HHHHHHHHHHHh-CCCEEEEEecCCc
Q psy13765        204 -GLDSQSC---SQCIKLLKMISQ-QGRTIICTIHQPS  235 (606)
Q Consensus       204 -gLD~~~~---~~i~~~l~~l~~-~g~tii~~~H~~~  235 (606)
                       ++|....   .++++.|+++++ .|+|||+++|+..
T Consensus       146 ~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~  182 (279)
T 1nlf_A          146 HIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASK  182 (279)
T ss_dssp             CCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred             cCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence             9998544   788889999875 5999999999965

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.58  E-value=3.4e-18  Score=181.78  Aligned_cols=163  Identities=14%  Similarity=0.063  Sum_probs=91.9

Q ss_pred             cceeeeEEEeC--CeEEEEECCCCCCHHHHHHHHhCCCCCCCc----cEEEEC----CccC--ChhhhcccEEEEccCCC
Q psy13765         51 VLKNLCGRFPS--NQLIAIMGPSGAGKSSLLDVLSGYRSNGVT----GQILTN----GHSR--NINAFRRVSCYIQQDDR  118 (606)
Q Consensus        51 iL~~vs~~i~~--Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~----G~I~~~----G~~~--~~~~~~~~~~yv~Q~~~  118 (606)
                      +.+.|++++++  |+.++|+||||||||||+++|+|+..+ .+    |++.++    |.+.  ...++ +.+++++|+..
T Consensus       157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~-~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~  234 (365)
T 1lw7_A          157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT-TSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYI  234 (365)
T ss_dssp             GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC-EEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHH
T ss_pred             ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC-CcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHH
Confidence            46789999999  999999999999999999999999876 46    777763    3322  12233 34666666532


Q ss_pred             CCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhh-hcCCcEEE
Q psy13765        119 LQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL-INNPRVMF  197 (606)
Q Consensus       119 l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL-~~~P~lll  197 (606)
                      ++. .|+.+.+...+ .+..++.+..+|+|+                              +++..+++++ ..+|++++
T Consensus       235 ~~~-~t~~~nl~~~~-~~~~~~~~~~~~~~~------------------------------~~~~~i~~~~~~~~~~lll  282 (365)
T 1lw7_A          235 DYA-VRHSHKIAFID-TDFITTQAFCIQYEG------------------------------KAHPFLDSMIKEYPFDVTI  282 (365)
T ss_dssp             HHH-HHHCSSEEEES-SCHHHHHHHHHHHHS------------------------------CCCHHHHHHHHHSCCSEEE
T ss_pred             HHH-HhccCCEEEEe-CCchHHHHHHHHHcC------------------------------CCCHHHHHHHhhcCCCEEE
Confidence            211 11111000000 000111111223333                              3444444443 24577777


Q ss_pred             EeC---CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeec
Q psy13765        198 LDE---PT------TGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLS  249 (606)
Q Consensus       198 LDE---PT------sgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~  249 (606)
                      |||   |+      .++|...+..+.+.|+++.+ .|.+|++++|. + ...+++|++..++
T Consensus       283 LdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~  342 (365)
T 1lw7_A          283 LLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE  342 (365)
T ss_dssp             EEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred             ECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence            777   54      46777777777777776644 36677777654 3 3446667666664

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.57  E-value=1.5e-16  Score=157.53  Aligned_cols=152  Identities=16%  Similarity=0.207  Sum_probs=101.4

Q ss_pred             EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC-CCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCc
Q psy13765         57 GRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN-GVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLD  135 (606)
Q Consensus        57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~-~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~  135 (606)
                      -..++|++++|+||||||||||+|+|+|..++ ...|.|.+++++... ..++.++|++|++..++.++++.-.    ++
T Consensus        11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f----~E   85 (219)
T 1s96_A           11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAF----LE   85 (219)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCE----EE
T ss_pred             ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHH----HH
Confidence            35789999999999999999999999998764 368999998876542 2356789999988766655441100    00


Q ss_pred             cccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHH
Q psy13765        136 ESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIK  215 (606)
Q Consensus       136 ~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~  215 (606)
                      .. . ..+.+.|-.++++   .+++.                              ++++++||     ||+.++.++.+
T Consensus        86 ~~-~-~~~~~yg~~~~~v---~~~l~------------------------------~G~illLD-----LD~~~~~~i~~  125 (219)
T 1s96_A           86 HA-E-VFGNYYGTSREAI---EQVLA------------------------------TGVDVFLD-----IDWQGAQQIRQ  125 (219)
T ss_dssp             EE-E-ETTEEEEEEHHHH---HHHHT------------------------------TTCEEEEE-----CCHHHHHHHHH
T ss_pred             HH-H-HHhccCCCCHHHH---HHHHh------------------------------cCCeEEEE-----ECHHHHHHHHH
Confidence            00 0 0011111112222   22233                              38999999     99999999998


Q ss_pred             HHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHHHHH
Q psy13765        216 LLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLS  267 (606)
Q Consensus       216 ~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~~f~  267 (606)
                      .+.    +++||++++|+++. +.   .|+  +.+|    .++++++...++
T Consensus       126 ~l~----~~~tI~i~th~~~~-l~---~Rl--~~rG----~~~~e~i~~rl~  163 (219)
T 1s96_A          126 KMP----HARSIFILPPSKIE-LD---RRL--RGRG----QDSEEVIAKRMA  163 (219)
T ss_dssp             HCT----TCEEEEEECSSHHH-HH---HHH--HTTS----CSCHHHHHHHHH
T ss_pred             Hcc----CCEEEEEECCCHHH-HH---HHH--HHcC----CCCHHHHHHHHH
Confidence            876    58999999999763 33   353  6777    577887776543

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.56  E-value=3.7e-15  Score=145.52  Aligned_cols=155  Identities=16%  Similarity=0.163  Sum_probs=96.9

Q ss_pred             ccceeee-EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCcc-CChhhhcccEEEEccCCCCCCCCcHHH
Q psy13765         50 DVLKNLC-GRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINAFRRVSCYIQQDDRLQPLLTIEN  127 (606)
Q Consensus        50 ~iL~~vs-~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~-~~~~~~~~~~~yv~Q~~~l~~~ltv~~  127 (606)
                      +.|+++. +-+++|++++|+||||||||||++.|++  ..+ .+.++++... .+...+++..    +..    ....++
T Consensus         7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~-~~v~~i~~~~~~~~~~~~~~~----~~~----~~~~~~   75 (220)
T 2cvh_A            7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSG-KKVAYVDTEGGFSPERLVQMA----ETR----GLNPEE   75 (220)
T ss_dssp             HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHC-SEEEEEESSCCCCHHHHHHHH----HTT----TCCHHH
T ss_pred             HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcC-CcEEEEECCCCCCHHHHHHHH----Hhc----CCChHH
Confidence            4577766 4799999999999999999999999998  221 3445554432 1111111100    000    011122


Q ss_pred             HHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcC-CcEEEEeCCCCCCC
Q psy13765        128 VMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINN-PRVMFLDEPTTGLD  206 (606)
Q Consensus       128 ~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~-P~lllLDEPTsgLD  206 (606)
                      +++.+        .+...+++++                            +++++..+++++.+ |+++++||||+++|
T Consensus        76 ~~~~~--------~~~~~~~~~~----------------------------~~~~~~~~~~l~~~~~~lliiD~~~~~l~  119 (220)
T 2cvh_A           76 ALSRF--------ILFTPSDFKE----------------------------QRRVIGSLKKTVDSNFALVVVDSITAHYR  119 (220)
T ss_dssp             HHHHE--------EEECCTTTSH----------------------------HHHHHHHHHHHCCTTEEEEEEECCCCCTT
T ss_pred             HhhcE--------EEEecCCHHH----------------------------HHHHHHHHHHHhhcCCCEEEEcCcHHHhh
Confidence            22111        1112233322                            23344556666654 99999999999999


Q ss_pred             HHH--------HHHHHHHHHHHHhC-CCEEEEEecCCch------------HHHhhcceeeeecCC
Q psy13765        207 SQS--------CSQCIKLLKMISQQ-GRTIICTIHQPSA------------TLFQMFDQVYLLSGG  251 (606)
Q Consensus       207 ~~~--------~~~i~~~l~~l~~~-g~tii~~~H~~~~------------~i~~~~D~v~~L~~G  251 (606)
                      +..        ..++++.|++++++ |.|||+++|....            .+...+|++++|++.
T Consensus       120 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~  185 (220)
T 2cvh_A          120 AEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL  185 (220)
T ss_dssp             GGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred             hcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence            743        24566668888764 9999999998652            467899999999754

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.53  E-value=2.3e-15  Score=159.86  Aligned_cols=138  Identities=13%  Similarity=0.112  Sum_probs=99.2

Q ss_pred             cceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCcc-CChhhhcccEEEEc-cCCCCCCCCcHHHH
Q psy13765         51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINAFRRVSCYIQ-QDDRLQPLLTIENV  128 (606)
Q Consensus        51 iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~-~~~~~~~~~~~yv~-Q~~~l~~~ltv~~~  128 (606)
                      +++++|+.+++|++++|+||||||||||+|+|+|+.++ .+|.|.++|.. ......++.+++++ |++.+         
T Consensus       164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~-~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~---------  233 (361)
T 2gza_A          164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF-DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE---------  233 (361)
T ss_dssp             HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEEESSSCCCCTTCSSEEEEECC--------------
T ss_pred             HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC-CceEEEECCccccCccccCCEEEEeecCcccc---------
Confidence            34999999999999999999999999999999999876 58999999853 22233567799999 66432         


Q ss_pred             HHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHH
Q psy13765        129 MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQ  208 (606)
Q Consensus       129 l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~  208 (606)
                          +           ++++...|..                              |+.++..+|+.+++|||+.     
T Consensus       234 ----~-----------~~~~~t~~~~------------------------------i~~~l~~~pd~~l~~e~r~-----  263 (361)
T 2gza_A          234 ----E-----------ENAPVTAATL------------------------------LRSCLRMKPTRILLAELRG-----  263 (361)
T ss_dssp             --------------------CCHHHH------------------------------HHHHTTSCCSEEEESCCCS-----
T ss_pred             ----c-----------cccccCHHHH------------------------------HHHHHhcCCCEEEEcCchH-----
Confidence                0           0122223444                              4444444599999999986     


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765        209 SCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ  252 (606)
Q Consensus       209 ~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~  252 (606)
                        .++.+.++.+.....|++.++|..+  ....+||+..+..|.
T Consensus       264 --~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~  303 (361)
T 2gza_A          264 --GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN  303 (361)
T ss_dssp             --THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred             --HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence              2455667766554468899999966  457899999998764

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.53  E-value=2.5e-15  Score=160.26  Aligned_cols=132  Identities=21%  Similarity=0.405  Sum_probs=95.2

Q ss_pred             ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHH
Q psy13765         50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVM  129 (606)
Q Consensus        50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l  129 (606)
                      .+|++++  +++|++++|+||||||||||+++|+|+.++..+|+|.+.|.+.. ..+++.+++|+|..            
T Consensus       126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~~~~~~~~~v~Q~~------------  190 (372)
T 2ewv_A          126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-YVFKHKKSIVNQRE------------  190 (372)
T ss_dssp             SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-SCCCCSSSEEEEEE------------
T ss_pred             HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-hhhccCceEEEeee------------
Confidence            3567765  78999999999999999999999999876522799987776554 23466788999852            


Q ss_pred             HHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHH
Q psy13765        130 SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQS  209 (606)
Q Consensus       130 ~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~  209 (606)
                        +|++      +..+      +.+                              |+++|..+|+++++||||   |..+
T Consensus       191 --~g~~------~~~~------~~~------------------------------l~~~L~~~pd~illdE~~---d~e~  223 (372)
T 2ewv_A          191 --VGED------TKSF------ADA------------------------------LRAALREDPDVIFVGEMR---DLET  223 (372)
T ss_dssp             --BTTT------BSCS------HHH------------------------------HHHHTTSCCSEEEESCCC---SHHH
T ss_pred             --cCCC------HHHH------HHH------------------------------HHHHhhhCcCEEEECCCC---CHHH
Confidence              2221      1223      234                              445555559999999999   7766


Q ss_pred             HHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec
Q psy13765        210 CSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS  249 (606)
Q Consensus       210 ~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~  249 (606)
                      ...   .++. +..|.+++.|+|+.+  +.+.+||++.|.
T Consensus       224 ~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~  257 (372)
T 2ewv_A          224 VET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF  257 (372)
T ss_dssp             HHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred             HHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence            443   3443 356899999999965  568899998774

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.50  E-value=3.7e-16  Score=168.73  Aligned_cols=162  Identities=17%  Similarity=0.200  Sum_probs=91.3

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CccEEEECCccCChhhh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG-VTGQILTNGHSRNINAF  106 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~-~~G~I~~~G~~~~~~~~  106 (606)
                      .|+++||+++|        +.+.+++|+|++|      +|+||||||||||+|+|+|...+. ..|.+.+++.+   ...
T Consensus        11 ~l~~~~l~~~y--------~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~---t~~   73 (418)
T 2qag_C           11 YVGFANLPNQV--------YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK---TVQ   73 (418)
T ss_dssp             ----CCCCCCT--------TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC--------CCE
T ss_pred             cEEEEecceeE--------CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc---cee
Confidence            48889998764        4567999999998      999999999999999999986531 12222222111   112


Q ss_pred             cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI  185 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I  185 (606)
                      .+.+++++|++.+++.+|+.+.+   |+....+       ..+ .+.+  ...+ .+           .++.+.++|+.|
T Consensus        74 ~~~i~~v~q~~~~~~~Ltv~Dt~---g~~~~~~-------~~~~~~~i--~~~i-~~-----------~~~~~l~qr~~I  129 (418)
T 2qag_C           74 VEQSKVLIKEGGVQLLLTIVDTP---GFGDAVD-------NSNCWQPV--IDYI-DS-----------KFEDYLNAESRV  129 (418)
T ss_dssp             EEEEECC------CEEEEEEECC---------------------CHHH--HHHH-HH-----------HHHHHTTTSCC-
T ss_pred             eeeEEEEEecCCcccceeeeech---hhhhhcc-------chhhHHHH--HHHH-HH-----------HHHHHHHHHHHH
Confidence            35689999988877777754322   1111110       000 0111  0000 00           123456778889


Q ss_pred             HHhhhcCCc---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765        186 ALELINNPR---VMFLDEPT-TGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS  235 (606)
Q Consensus       186 A~aL~~~P~---lllLDEPT-sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~  235 (606)
                      |++++.+|+   +|++|||| .|||+...    ++++++.. +.+||+++|..+
T Consensus       130 aRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~D  178 (418)
T 2qag_C          130 NRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKAD  178 (418)
T ss_dssp             CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEESTT
T ss_pred             HHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEccc
Confidence            999999999   99999999 69998873    44555544 788888888743

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.48  E-value=1.5e-16  Score=152.63  Aligned_cols=170  Identities=16%  Similarity=0.198  Sum_probs=105.5

Q ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCc---ccc
Q psy13765         62 NQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLD---ESQ  138 (606)
Q Consensus        62 Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~---~~~  138 (606)
                      |++++|+||||||||||+++|++.    .+|.+.++|.+...   ....++++|.....+..++.+.+......   ...
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~----~~g~~~i~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   74 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQ----LDNSAYIEGDIINH---MVVGGYRPPWESDELLALTWKNITDLTVNFLLAQN   74 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH----SSSEEEEEHHHHHT---TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcc----cCCeEEEcccchhh---hhccccccCccchhHHHHHHHHHHHHHHHHHhcCC
Confidence            789999999999999999999972    36899998854311   12346677765444444554433321000   000


Q ss_pred             CCcccc-CChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHH------hhhcCCcEEEEeCCCCCCCHHHHH
Q psy13765        139 NTRSSQ-LSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL------ELINNPRVMFLDEPTTGLDSQSCS  211 (606)
Q Consensus       139 ~~~~~~-lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~------aL~~~P~lllLDEPTsgLD~~~~~  211 (606)
                      +..+.. +....++++   +.++.              |+|+++++.++.      ++..+|+...+||   |||+....
T Consensus        75 ~~ild~~~~~~~~~~~---~~~~~--------------s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~  134 (189)
T 2bdt_A           75 DVVLDYIAFPDEAEAL---AQTVQ--------------AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLE  134 (189)
T ss_dssp             EEEEESCCCHHHHHHH---HHHHH--------------HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGH
T ss_pred             cEEEeeccCHHHHHHH---HHHHH--------------hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHH
Confidence            001111 121222221   11110              456677777777      8888899888884   89998888


Q ss_pred             HHHHHHHHHHhCCCEEEEEecC-CchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765        212 QCIKLLKMISQQGRTIICTIHQ-PSATLFQMFDQVYLLSGGQCLYQGATDQL  262 (606)
Q Consensus       212 ~i~~~l~~l~~~g~tii~~~H~-~~~~i~~~~D~v~~L~~G~~~~~G~~~~~  262 (606)
                      . .+.++.+.+.+.++|.++|+ ++ ++.+.||+|+  ++|+++..|+++-+
T Consensus       135 ~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~~g~~~~~~~~~~~  182 (189)
T 2bdt_A          135 L-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK--TNPRFIFCMAGDPL  182 (189)
T ss_dssp             H-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--HCGGGSCC------
T ss_pred             H-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--hCCcEEEeecCCch
Confidence            8 88888876668899999998 76 4778999999  99999999998654

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.48  E-value=9.5e-14  Score=132.30  Aligned_cols=96  Identities=18%  Similarity=0.245  Sum_probs=73.3

Q ss_pred             cCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHH
Q psy13765        138 QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL  217 (606)
Q Consensus       138 ~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l  217 (606)
                      ..+.+..||||||||+++|++++.+|                          ...|++++|||||+|||+.+...+.+.|
T Consensus        58 ~~~~~~~LSgGekqr~ala~~la~~~--------------------------~~~~~~llLDEp~a~LD~~~~~~~~~~l  111 (173)
T 3kta_B           58 DVKRIEAMSGGEKALTALAFVFAIQK--------------------------FKPAPFYLFDEIDAHLDDANVKRVADLI  111 (173)
T ss_dssp             SCCCGGGCCHHHHHHHHHHHHHHHHH--------------------------HSCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred             cccccccCCHHHHHHHHHHHHHHhcc--------------------------cCCCCEEEECCCccCCCHHHHHHHHHHH
Confidence            34567789999999999888876431                          1227999999999999999999999999


Q ss_pred             HHHHhCCCEEEEEecCCchHHHhhcceeeeec--CCcE-EEEcChhHH
Q psy13765        218 KMISQQGRTIICTIHQPSATLFQMFDQVYLLS--GGQC-LYQGATDQL  262 (606)
Q Consensus       218 ~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~--~G~~-~~~G~~~~~  262 (606)
                      +++++ +.++|+++|+.  .+...+|+++.+.  +|.. +...+.++.
T Consensus       112 ~~~~~-~~~~ivith~~--~~~~~ad~i~~v~~~~g~s~~~~~~~~~~  156 (173)
T 3kta_B          112 KESSK-ESQFIVITLRD--VMMANADKIIGVSMRDGVSKVVSLSLEKA  156 (173)
T ss_dssp             HHHTT-TSEEEEECSCH--HHHTTCSEEEEEEEETTEEEEEECCHHHH
T ss_pred             HHhcc-CCEEEEEEecH--HHHHhCCEEEEEEecCCEEEEEEEEcHHH
Confidence            99865 46899999995  3568999998664  5643 233444443

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.45  E-value=5.3e-15  Score=159.33  Aligned_cols=174  Identities=16%  Similarity=0.167  Sum_probs=104.4

Q ss_pred             cccccceeeeEEEeCCeE--EEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCc
Q psy13765         47 EPKDVLKNLCGRFPSNQL--IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLT  124 (606)
Q Consensus        47 ~~~~iL~~vs~~i~~Ge~--~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~lt  124 (606)
                      +..+ |+++|+++++|++  ++|+||||||||||+|+|+|..-   .|.....   ......++.++|++|++.+++.+|
T Consensus        26 ~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l---~g~~~~~---~~~~~~~~~i~~v~Q~~~l~~~lt   98 (427)
T 2qag_B           26 DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF---EGEPATH---TQPGVQLQSNTYDLQESNVRLKLT   98 (427)
T ss_dssp             C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------------CCSSCEEEEEEEEEEC--CEEEEE
T ss_pred             CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc---cCCcCCC---CCccceEeeEEEEeecCccccccc
Confidence            3445 9999999999999  99999999999999999999842   2221110   111223457999999988877777


Q ss_pred             HHHHHHHcCCccccCCc--cccCChHHHHHHHH--HHHH--------hcCCc----ccccCCCCCCCCchhhhHHHHHHh
Q psy13765        125 IENVMSLLGLDESQNTR--SSQLSGGQKKRLSI--ALEL--------INNPR----VMFLDEPTTSNPNDQKKRLSIALE  188 (606)
Q Consensus       125 v~~~l~~~gl~~~~~~~--~~~lSgGqrqRv~i--a~~L--------~~~~~----~~~~de~~~~~s~g~~krl~IA~a  188 (606)
                      +.+.   +++....+..  -..++.-.+++..-  ...+        ..+.+    ++++......++..+   ++|+++
T Consensus        99 v~D~---~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~  172 (427)
T 2qag_B           99 IVST---VGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKK  172 (427)
T ss_dssp             EEEE---ECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHH
T ss_pred             hhhh---hhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHH
Confidence            5432   2222111100  00011111222211  1110        01112    223333333455444   789999


Q ss_pred             hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEecC
Q psy13765        189 LINNPRVMFLDEPTTGLDSQSCSQCIKLLKM-ISQQGRTIICTIHQ  233 (606)
Q Consensus       189 L~~~P~lllLDEPTsgLD~~~~~~i~~~l~~-l~~~g~tii~~~H~  233 (606)
                      |..+++++++||||..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus       173 L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~  218 (427)
T 2qag_B          173 LDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD  218 (427)
T ss_dssp             TCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred             HhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence            9999999999999999999999999999886 87789999988865

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.45  E-value=2.8e-13  Score=134.09  Aligned_cols=149  Identities=11%  Similarity=0.181  Sum_probs=89.2

Q ss_pred             EEEeCCeEEEEECCCCCCHHHHHHHHhC--CCCC----CCccEEEECCccC-Chhh---hcccEEEEccCCCCCCCCcHH
Q psy13765         57 GRFPSNQLIAIMGPSGAGKSSLLDVLSG--YRSN----GVTGQILTNGHSR-NINA---FRRVSCYIQQDDRLQPLLTIE  126 (606)
Q Consensus        57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L~g--~~~~----~~~G~I~~~G~~~-~~~~---~~~~~~yv~Q~~~l~~~ltv~  126 (606)
                      +-+++|++++|+||||||||||++.|++  ..++    ...|.+++++... ....   ..+.+++.+|           
T Consensus        19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~-----------   87 (243)
T 1n0w_A           19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS-----------   87 (243)
T ss_dssp             TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-----------
T ss_pred             CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHH-----------
Confidence            5699999999999999999999999999  3332    1367888888652 2221   2233343332           


Q ss_pred             HHHHHcCCccccCCccccCChHHHHH-HHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCC
Q psy13765        127 NVMSLLGLDESQNTRSSQLSGGQKKR-LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL  205 (606)
Q Consensus       127 ~~l~~~gl~~~~~~~~~~lSgGqrqR-v~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgL  205 (606)
                      ++++.+.+       ....+..+... +..+.+++.                            ..+|+++++|||++.+
T Consensus        88 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~lliiD~~~~~~  132 (243)
T 1n0w_A           88 DVLDNVAY-------ARAFNTDHQTQLLYQASAMMV----------------------------ESRYALLIVDSATALY  132 (243)
T ss_dssp             HHHHTEEE-------EECCSHHHHHHHHHHHHHHHH----------------------------HSCEEEEEEETSSGGG
T ss_pred             HHhhCeEE-------EecCCHHHHHHHHHHHHHHHh----------------------------cCCceEEEEeCchHHH
Confidence            22222111       11234444332 221222221                            1359999999999999


Q ss_pred             CHH-------H-----HHHHHHHHHHHHhC-CCEEEEEecCCchH------------------HHhhcceeeeecCC
Q psy13765        206 DSQ-------S-----CSQCIKLLKMISQQ-GRTIICTIHQPSAT------------------LFQMFDQVYLLSGG  251 (606)
Q Consensus       206 D~~-------~-----~~~i~~~l~~l~~~-g~tii~~~H~~~~~------------------i~~~~D~v~~L~~G  251 (606)
                      |+.       +     ..++++.|++++++ |.|||+++|.....                  +...||.+++|++|
T Consensus       133 ~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~  209 (243)
T 1n0w_A          133 RTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG  209 (243)
T ss_dssp             C-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred             HHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence            975       3     34566667776654 99999999965421                  22279999999865

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.42  E-value=8.3e-15  Score=140.26  Aligned_cols=158  Identities=10%  Similarity=0.039  Sum_probs=93.7

Q ss_pred             EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChh-hhcccEEEEccCCCCCCCCcHHHHHHHc----
Q psy13765         58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNIN-AFRRVSCYIQQDDRLQPLLTIENVMSLL----  132 (606)
Q Consensus        58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~-~~~~~~~yv~Q~~~l~~~ltv~~~l~~~----  132 (606)
                      .+++|++++|+||||||||||+++|+|.  + ..|.|.++|.+.... ..++.++|++|+..  +..++.+.+...    
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~-~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~   79 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL--P-GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRY   79 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC--S-SSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc--c-CCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHH
Confidence            4789999999999999999999999997  3 379999998643111 11234677777543  334554433221    


Q ss_pred             ---CCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHH
Q psy13765        133 ---GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQS  209 (606)
Q Consensus       133 ---gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~  209 (606)
                         |.....+......   +.+...       .     .+.+...+|+|++||+.++|++.++|+++        +|+..
T Consensus        80 ~~~~~~~~~~~~~~~~---~l~~~~-------~-----~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~  136 (191)
T 1zp6_A           80 AKEGYFVILDGVVRPD---WLPAFT-------A-----LARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLV  136 (191)
T ss_dssp             HHTSCEEEECSCCCTT---TTHHHH-------T-----TCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHH
T ss_pred             hccCCeEEEeccCcHH---HHHHHH-------h-----cCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHH
Confidence               1111111111000   000000       0     02344567889999999999999999876        68887


Q ss_pred             HHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceee
Q psy13765        210 CSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVY  246 (606)
Q Consensus       210 ~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~  246 (606)
                      ...+.+.++.+...+..+|.++|+ +  +.+.+|+++
T Consensus       137 ~~~~~~~~~~l~~~~~~~i~t~~~-~--~~~~~~~i~  170 (191)
T 1zp6_A          137 VADLHSQFADLGAFEHHVLPVSGK-D--TDQALQSAI  170 (191)
T ss_dssp             HHHHHHHTTCCGGGGGGEEECTTC-C--TTTTTTTTH
T ss_pred             HHHHHHHHhccCcccccEEECCCC-C--HHHHHHHHH
Confidence            777777776654433344444432 2  124455553

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.42  E-value=3.2e-14  Score=135.31  Aligned_cols=46  Identities=15%  Similarity=0.118  Sum_probs=41.5

Q ss_pred             CCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q psy13765        192 NPRVMFLDEPTT-GLDSQSCSQCIKLLKMISQQGRTIICTIHQPSAT  237 (606)
Q Consensus       192 ~P~lllLDEPTs-gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~  237 (606)
                      +|++|+||||++ ++|+.....+.+++.+..++|+++|++||.+..+
T Consensus       100 ~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~  146 (180)
T 3ec2_A          100 NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR  146 (180)
T ss_dssp             TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence            499999999995 9999999999999998888899999999998654

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.42  E-value=1.4e-15  Score=142.86  Aligned_cols=85  Identities=14%  Similarity=0.066  Sum_probs=69.0

Q ss_pred             cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHH
Q psy13765         47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIE  126 (606)
Q Consensus        47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~  126 (606)
                      +++.+++++|+++++|++++|+||||||||||+|+|+|.. + .+|+|.++|.+... .... ..+++|+..++ .+|+.
T Consensus        18 g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~-~~G~V~~~g~~i~~-~~~~-~~~~~q~~~l~-~ltv~   92 (158)
T 1htw_A           18 GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G-HQGNVKSPTYTLVE-EYNI-AGKMIYHFDLY-RLADP   92 (158)
T ss_dssp             HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T-CCSCCCCCTTTCEE-EEEE-TTEEEEEEECT-TCSCT
T ss_pred             HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C-CCCeEEECCEeeee-eccC-CCcceeccccc-cCCcH
Confidence            4567999999999999999999999999999999999988 5 58999999986532 1111 12799998888 88986


Q ss_pred             HHHHHcCCcc
Q psy13765        127 NVMSLLGLDE  136 (606)
Q Consensus       127 ~~l~~~gl~~  136 (606)
                      +-+..+|+.+
T Consensus        93 e~l~~~g~~~  102 (158)
T 1htw_A           93 EELEFMGIRD  102 (158)
T ss_dssp             THHHHSTHHH
T ss_pred             HHHHHcChHh
Confidence            6666677654

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.42  E-value=1e-13  Score=128.85  Aligned_cols=96  Identities=18%  Similarity=0.278  Sum_probs=72.7

Q ss_pred             ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcc--EEEECCccCChhhhcccEEEEccCCCCCCCCcHHH
Q psy13765         50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTG--QILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIEN  127 (606)
Q Consensus        50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G--~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~  127 (606)
                      .+|+++     +|+.++|+||||+|||||+++|++...+  +|  .+++++.+....                       
T Consensus        29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~g~~~~~~~~~~~~~~-----------------------   78 (149)
T 2kjq_A           29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE--AGKNAAYIDAASMPLT-----------------------   78 (149)
T ss_dssp             HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT--TTCCEEEEETTTSCCC-----------------------
T ss_pred             HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEcHHHhhHH-----------------------
Confidence            467776     8999999999999999999999997643  45  555554322100                       


Q ss_pred             HHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCH
Q psy13765        128 VMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDS  207 (606)
Q Consensus       128 ~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~  207 (606)
                                                    +++.+                              |++|++|||++ +|.
T Consensus        79 ------------------------------~~~~~------------------------------~~lLilDE~~~-~~~   97 (149)
T 2kjq_A           79 ------------------------------DAAFE------------------------------AEYLAVDQVEK-LGN   97 (149)
T ss_dssp             ------------------------------GGGGG------------------------------CSEEEEESTTC-CCS
T ss_pred             ------------------------------HHHhC------------------------------CCEEEEeCccc-cCh
Confidence                                          11223                              99999999998 666


Q ss_pred             HHHHHHHHHHHHHHhCCCE-EEEEecCCch
Q psy13765        208 QSCSQCIKLLKMISQQGRT-IICTIHQPSA  236 (606)
Q Consensus       208 ~~~~~i~~~l~~l~~~g~t-ii~~~H~~~~  236 (606)
                      ..+..+.+++.++.++|++ +|+++|.+..
T Consensus        98 ~~~~~l~~li~~~~~~g~~~iiits~~~p~  127 (149)
T 2kjq_A           98 EEQALLFSIFNRFRNSGKGFLLLGSEYTPQ  127 (149)
T ss_dssp             HHHHHHHHHHHHHHHHTCCEEEEEESSCTT
T ss_pred             HHHHHHHHHHHHHHHcCCcEEEEECCCCHH
Confidence            6688899999998888888 8899986543

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.40  E-value=1.5e-15  Score=152.17  Aligned_cols=153  Identities=16%  Similarity=0.197  Sum_probs=97.8

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHh---CCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHH-cCCcc
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLS---GYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSL-LGLDE  136 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~---g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~-~gl~~  136 (606)
                      ++++++|+||||||||||+++|+   |+..+ ..|+|.++|.+.. ....+.+.+++|+..+.+..++.+.+.. +.-..
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~-~~G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~  103 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL-SSGHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMSELENRR  103 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE-EHHHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe-cHHHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence            47999999999999999999999   98765 4788888775432 1233445566788777787777665543 21000


Q ss_pred             ccCCccccCChHHHHHHHHHHHHhcCCccc-c------------cCCCCCCCCchhhhHHHHHHhh-hcCCcEEEEe---
Q psy13765        137 SQNTRSSQLSGGQKKRLSIALELINNPRVM-F------------LDEPTTSNPNDQKKRLSIALEL-INNPRVMFLD---  199 (606)
Q Consensus       137 ~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~------------~de~~~~~s~g~~krl~IA~aL-~~~P~lllLD---  199 (606)
                      ...-...+.+..+.|.-.+  ..+..++++ .            .+.+...+||    |+   +++ +.+|++++||   
T Consensus       104 ~~~~il~g~~~~~~~~~~l--~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~  174 (246)
T 2bbw_A          104 GQHWLLDGFPRTLGQAEAL--DKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVT  174 (246)
T ss_dssp             TSCEEEESCCCSHHHHHHH--HTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTT
T ss_pred             CCeEEEECCCCCHHHHHHH--HhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccc
Confidence            0000011122222211111  111334421 2            2334445666    55   677 9999999999   


Q ss_pred             -CCCCCCCHHHHHHHHHHHHHHHhCC
Q psy13765        200 -EPTTGLDSQSCSQCIKLLKMISQQG  224 (606)
Q Consensus       200 -EPTsgLD~~~~~~i~~~l~~l~~~g  224 (606)
                       |||+|||..+...+.+.++++.+++
T Consensus       175 ~EP~~~ld~~~~~~i~~~l~~~~~~~  200 (246)
T 2bbw_A          175 GEPLVQQEDDKPEAVAARLRQYKDVA  200 (246)
T ss_dssp             CCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred             ccccccCCCCcHHHHHHHHHHHHHhH
Confidence             9999999999999999999887653

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.37  E-value=7.6e-13  Score=140.91  Aligned_cols=84  Identities=27%  Similarity=0.427  Sum_probs=68.4

Q ss_pred             cccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcC-CcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy13765        142 SSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINN-PRVMFLDEPTTGLDSQSCSQCIKLLKMI  220 (606)
Q Consensus       142 ~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~-P~lllLDEPTsgLD~~~~~~i~~~l~~l  220 (606)
                      +..+||||+||+++|..                        +++|++|+.+ |++|+|||||+|||+..+..+.+.|+++
T Consensus       278 ~~~lS~G~~~~~~lal~------------------------la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~  333 (371)
T 3auy_A          278 IDNLSGGEQIAVALSLR------------------------LAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKV  333 (371)
T ss_dssp             GGGSCHHHHHHHHHHHH------------------------HHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHC
T ss_pred             hHhcCHHHHHHHHHHHH------------------------HHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHh
Confidence            34566777666666542                        3578999999 9999999999999999999999999987


Q ss_pred             HhCCCEEEEEecCCchHHHhhcceeeeec-CCc
Q psy13765        221 SQQGRTIICTIHQPSATLFQMFDQVYLLS-GGQ  252 (606)
Q Consensus       221 ~~~g~tii~~~H~~~~~i~~~~D~v~~L~-~G~  252 (606)
                      .+ +.+||++||++.  +...+|++++|+ +|.
T Consensus       334 ~~-~~~vi~~th~~~--~~~~~d~~~~l~k~~~  363 (371)
T 3auy_A          334 KS-IPQMIIITHHRE--LEDVADVIINVKKDGN  363 (371)
T ss_dssp             CS-CSEEEEEESCGG--GGGGCSEEEEEEESSS
T ss_pred             cc-CCeEEEEEChHH--HHhhCCEEEEEEecCC
Confidence            43 569999999975  468999999996 443

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.36  E-value=8.7e-14  Score=151.89  Aligned_cols=177  Identities=17%  Similarity=0.147  Sum_probs=108.9

Q ss_pred             ceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-------hh--hcccEEEEccCCCCCCC
Q psy13765         52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-------NA--FRRVSCYIQQDDRLQPL  122 (606)
Q Consensus        52 L~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-------~~--~~~~~~yv~Q~~~l~~~  122 (606)
                      -+++|+++++|++++|+||||||||||+++|+|++.+ .+|+|.++|.+...       ..  .++.++|++|+..+.+.
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~-~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~  361 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ-QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA  361 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh-cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence            4689999999999999999999999999999998765 48999998765321       12  25679999999888887


Q ss_pred             CcHHHHHHHc---CCcc-ccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhh-cCC-cEE
Q psy13765        123 LTIENVMSLL---GLDE-SQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELI-NNP-RVM  196 (606)
Q Consensus       123 ltv~~~l~~~---gl~~-~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~-~~P-~ll  196 (606)
                      +++.+.+...   +.+. ..|+- +.+.. ..   .+..+                    -+|++.+++++. ..| .+|
T Consensus       362 ~tV~e~l~~a~~~~~DvVLIDTa-Grl~~-~~---~lm~E--------------------L~kiv~iar~l~~~~P~evL  416 (503)
T 2yhs_A          362 SVIFDAIQAAKARNIDVLIADTA-GRLQN-KS---HLMEE--------------------LKKIVRVMKKLDVEAPHEVM  416 (503)
T ss_dssp             HHHHHHHHHHHHTTCSEEEECCC-CSCCC-HH---HHHHH--------------------HHHHHHHHHTTCTTCSSEEE
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCC-Cccch-hh---hHHHH--------------------HHHHHHHHHHhccCCCCeeE
Confidence            7876655432   1111 11211 11100 00   00001                    134555666543 346 456


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeec--CCcEEEEcChhHH
Q psy13765        197 FLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLS--GGQCLYQGATDQL  262 (606)
Q Consensus       197 lLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~--~G~~~~~G~~~~~  262 (606)
                      |...||+|.|..      +.++.+.+ -|.|.+++||- +. ..+..+.+-++.  +..+.|.|.-+.+
T Consensus       417 LvLDattGq~al------~~ak~f~~~~~itgvIlTKL-D~-takgG~~lsi~~~~~~PI~fig~Ge~v  477 (503)
T 2yhs_A          417 LTIDASTGQNAV------SQAKLFHEAVGLTGITLTKL-DG-TAKGGVIFSVADQFGIPIRYIGVGERI  477 (503)
T ss_dssp             EEEEGGGTHHHH------HHHHHHHHHTCCSEEEEECG-GG-CSCCTHHHHHHHHHCCCEEEEECSSSG
T ss_pred             EEecCcccHHHH------HHHHHHHhhcCCCEEEEEcC-CC-cccccHHHHHHHHHCCCEEEEecCCCh
Confidence            555588886543      44555554 48899999994 22 223334333333  4467777765443

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.35  E-value=3.7e-15  Score=155.60  Aligned_cols=142  Identities=12%  Similarity=0.071  Sum_probs=87.2

Q ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCC-------CCCccEEEECCccCCh------------------hhhcccEEEE---
Q psy13765         62 NQLIAIMGPSGAGKSSLLDVLSGYRS-------NGVTGQILTNGHSRNI------------------NAFRRVSCYI---  113 (606)
Q Consensus        62 Ge~~aIiGpsGaGKSTLL~~L~g~~~-------~~~~G~I~~~G~~~~~------------------~~~~~~~~yv---  113 (606)
                      =++++|+|+||||||||+|.|.|...       .+..|+|.+||.+...                  .++++.++++   
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~   83 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN   83 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence            36899999999999999999999852       2258999999975421                  2344556666   


Q ss_pred             ccCCCCCCCCcH---------HHHHHHc-CCcc-----ccCCccc--cCChHHHHHHHHHHHHhcCCcccccCCCCCCCC
Q psy13765        114 QQDDRLQPLLTI---------ENVMSLL-GLDE-----SQNTRSS--QLSGGQKKRLSIALELINNPRVMFLDEPTTSNP  176 (606)
Q Consensus       114 ~Q~~~l~~~ltv---------~~~l~~~-gl~~-----~~~~~~~--~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s  176 (606)
                      +|+..+++..++         ..++..+ .-..     ..+..+.  ++...+++..                    .+|
T Consensus        84 ~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~--------------------~ls  143 (318)
T 1nij_A           84 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN--------------------QFT  143 (318)
T ss_dssp             HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH--------------------HCH
T ss_pred             HhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh--------------------hch
Confidence            566555444432         1221111 0000     0000000  1111222211                    246


Q ss_pred             chhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765        177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS  235 (606)
Q Consensus       177 ~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~  235 (606)
                      +||+||+..+++++.+|+++  |||         .++.+.+++++ .+.||++++|++.
T Consensus       144 ~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~  190 (318)
T 1nij_A          144 IAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI  190 (318)
T ss_dssp             HHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred             HHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence            66777766677777778877  888         67888888875 5899999999865

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.34  E-value=9.3e-15  Score=139.10  Aligned_cols=100  Identities=12%  Similarity=0.132  Sum_probs=61.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCC--CccEEEECCccC-C-----hhhhc-ccEE----EEccCCCCCCC-----C-
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGYRSNG--VTGQILTNGHSR-N-----INAFR-RVSC----YIQQDDRLQPL-----L-  123 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~~~~~--~~G~I~~~G~~~-~-----~~~~~-~~~~----yv~Q~~~l~~~-----l-  123 (606)
                      ++++|+||||||||||+++|+|++.+.  ..|.|.+||.+. +     .+.+| +.+|    +++|+..++-.     . 
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~~~~~~~   82 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIRRVSEEEG   82 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEEECCHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEecCChhhh
Confidence            589999999999999999999987542  279999999762 2     23455 4566    88998765511     1 


Q ss_pred             -cHHHHHHH-cCCccccCCcc-ccCChHHHHHHHHHHHHhcCCcc
Q psy13765        124 -TIENVMSL-LGLDESQNTRS-SQLSGGQKKRLSIALELINNPRV  165 (606)
Q Consensus       124 -tv~~~l~~-~gl~~~~~~~~-~~lSgGqrqRv~ia~~L~~~~~~  165 (606)
                       .+++.++. +.   -.|+.+ .++|||||||++|||+++.+|++
T Consensus        83 a~l~~~i~~~l~---g~dt~i~EglSgGq~qri~lARall~~p~i  124 (171)
T 2f1r_A           83 NDLDWIYERYLS---DYDLVITEGFSKAGKDRIVVVKKPEEVEHF  124 (171)
T ss_dssp             TCHHHHHHHHTT---TCSEEEEESCGGGCCCEEEECSSGGGGGGG
T ss_pred             hCHHHHHHhhCC---CCCEEEECCcCCCCCcEEEEEecccCCCcc
Confidence             23344433 21   122222 23777777777777777776654

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.32  E-value=5.1e-13  Score=141.05  Aligned_cols=107  Identities=20%  Similarity=0.216  Sum_probs=68.4

Q ss_pred             cceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCccEEEEC-CccCChhhhcccEEEEccCCCCCCCCcHH--
Q psy13765         51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS-NGVTGQILTN-GHSRNINAFRRVSCYIQQDDRLQPLLTIE--  126 (606)
Q Consensus        51 iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~-~~~~G~I~~~-G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~--  126 (606)
                      -+++++.. .+|++++|+||||||||||+|+|+|... + .+|+|.++ |+... ...++.+++++|+..+++..++.  
T Consensus       205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~-~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~  281 (358)
T 2rcn_A          205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEI-LTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREF  281 (358)
T ss_dssp             THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCC-CCC--------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred             CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccccc-ccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHh
Confidence            45666664 4899999999999999999999999976 6 58999987 65432 23456789999998777765552  


Q ss_pred             ---------------HHHHHcCCccccCCccccCChHHHHHHHHHHHHhc
Q psy13765        127 ---------------NVMSLLGLDESQNTRSSQLSGGQKKRLSIALELIN  161 (606)
Q Consensus       127 ---------------~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~  161 (606)
                                     ++++.+|+.+..+....++| ||+||+++|++++.
T Consensus       282 ~l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli~  330 (358)
T 2rcn_A          282 GLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAIA  330 (358)
T ss_dssp             CCCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSSC
T ss_pred             hhcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCCC
Confidence                           23344455555555566666 66666666655543

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=99.31  E-value=2.6e-12  Score=137.96  Aligned_cols=149  Identities=10%  Similarity=0.121  Sum_probs=91.6

Q ss_pred             EEEeCCeEEEEECCCCCCHHHHHHHH--hCCCCCC----CccEEEECCccC-Chhh---hcccEEEEccCCCCCCCCcHH
Q psy13765         57 GRFPSNQLIAIMGPSGAGKSSLLDVL--SGYRSNG----VTGQILTNGHSR-NINA---FRRVSCYIQQDDRLQPLLTIE  126 (606)
Q Consensus        57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L--~g~~~~~----~~G~I~~~G~~~-~~~~---~~~~~~yv~Q~~~l~~~ltv~  126 (606)
                      +-+++|++++|+||||||||||++.|  .+..++.    ..+.+++++... ....   +.+.+++.+|           
T Consensus       173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-----------  241 (400)
T 3lda_A          173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-----------  241 (400)
T ss_dssp             TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-----------
T ss_pred             CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-----------
Confidence            57999999999999999999999944  5665431    234788887642 2211   2233333322           


Q ss_pred             HHHHHcCCccccCCccccCChHH--HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCC
Q psy13765        127 NVMSLLGLDESQNTRSSQLSGGQ--KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTG  204 (606)
Q Consensus       127 ~~l~~~gl~~~~~~~~~~lSgGq--rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsg  204 (606)
                      ++++.+-+        .....++  .+.+..+.+++.                            ..+|+++++||||+.
T Consensus       242 ~vleni~~--------~~~~~~~~~~~~l~~~~~~l~----------------------------~~~~~llVIDs~t~~  285 (400)
T 3lda_A          242 DALNNVAY--------ARAYNADHQLRLLDAAAQMMS----------------------------ESRFSLIVVDSVMAL  285 (400)
T ss_dssp             HHHHTEEE--------EECCSHHHHHHHHHHHHHHHH----------------------------HSCEEEEEEETGGGG
T ss_pred             hHhhcEEE--------eccCChHHHHHHHHHHHHHHH----------------------------hcCCceEEecchhhh
Confidence            22221111        1112222  233332222221                            135999999999999


Q ss_pred             CCHHHH------------HHHHHHHHHHHhC-CCEEEEEecCCc------------------hHHHhhcceeeeecCCc
Q psy13765        205 LDSQSC------------SQCIKLLKMISQQ-GRTIICTIHQPS------------------ATLFQMFDQVYLLSGGQ  252 (606)
Q Consensus       205 LD~~~~------------~~i~~~l~~l~~~-g~tii~~~H~~~------------------~~i~~~~D~v~~L~~G~  252 (606)
                      +|+...            .++++.|++++++ |.|||+++|...                  ..+...+|.++.|++|+
T Consensus       286 ~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~  364 (400)
T 3lda_A          286 YRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK  364 (400)
T ss_dssp             CC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred             CchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence            996543            6688888888775 999999999821                  23456789999997653

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.31  E-value=4e-13  Score=140.70  Aligned_cols=142  Identities=13%  Similarity=0.083  Sum_probs=92.0

Q ss_pred             EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-------hhhcc--cEEEEccCCCCCCCCcHHHHH
Q psy13765         59 FPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-------NAFRR--VSCYIQQDDRLQPLLTIENVM  129 (606)
Q Consensus        59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-------~~~~~--~~~yv~Q~~~l~~~ltv~~~l  129 (606)
                      .++|++++|+||||||||||++.|+|+..+ ..|+|.++|.+...       ..+++  .+.+++|+..+.|.+++.+.+
T Consensus       126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~-~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l  204 (328)
T 3e70_C          126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKN-HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI  204 (328)
T ss_dssp             SCSSEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHh-cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence            368999999999999999999999998765 48999999976431       11233  355999999888888886655


Q ss_pred             HHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCC-C-CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCH
Q psy13765        130 SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS-N-PNDQKKRLSIALELINNPRVMFLDEPTTGLDS  207 (606)
Q Consensus       130 ~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~-~-s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~  207 (606)
                      .... .                         .+.+++++|.+... . ..=.++.-.|++++..++.+++||.+|.    
T Consensus       205 ~~~~-~-------------------------~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~----  254 (328)
T 3e70_C          205 QHAK-A-------------------------RGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG----  254 (328)
T ss_dssp             HHHH-H-------------------------HTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT----
T ss_pred             HHHH-h-------------------------ccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH----
Confidence            4310 0                         11122222221110 0 0001111236677776688888885553    


Q ss_pred             HHHHHHHHHHHHHHh-CCCEEEEEecCC
Q psy13765        208 QSCSQCIKLLKMISQ-QGRTIICTIHQP  234 (606)
Q Consensus       208 ~~~~~i~~~l~~l~~-~g~tii~~~H~~  234 (606)
                         .++++.++.+.+ .+.|+|++||..
T Consensus       255 ---~~~~~~~~~~~~~~~it~iilTKlD  279 (328)
T 3e70_C          255 ---NAIVEQARQFNEAVKIDGIILTKLD  279 (328)
T ss_dssp             ---THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred             ---HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence               355666777764 489999999964

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.31  E-value=1.8e-12  Score=136.07  Aligned_cols=182  Identities=12%  Similarity=0.106  Sum_probs=90.8

Q ss_pred             EEEECCCCCCHHHHHHHHhC-CCCCCCccEEEECCccCC-hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCcc
Q psy13765         65 IAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHSRN-INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRS  142 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g-~~~~~~~G~I~~~G~~~~-~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~  142 (606)
                      +.|.||||+|||||+++|++ +..+ ..|++.++|.+.. ....+..+++++|.+.+.-...              +.  
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l~~~-~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~--  101 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESIFGP-GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--------------DM--  101 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHSCT-TCCC------------------CCEECSSEEEECCC------------------
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCC-CCCeEEecceeecccccccceeeeecccceEEecHh--------------hc--
Confidence            89999999999999999999 5554 4799999987543 1222456788888764321100              00  


Q ss_pred             ccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy13765        143 SQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ  222 (606)
Q Consensus       143 ~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~  222 (606)
                      +.-.+.+-+.  +...+.....+   ++.. .+|+           +..+|+++++|||++ ||..++..+.+.+.+.. 
T Consensus       102 ~~~~~~~~~~--~i~~~~~~~~~---~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-  162 (354)
T 1sxj_E          102 GNNDRIVIQE--LLKEVAQMEQV---DFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-  162 (354)
T ss_dssp             --CCHHHHHH--HHHHHTTTTC---------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST-
T ss_pred             CCcchHHHHH--HHHHHHHhccc---cccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-
Confidence            0000000000  01111111000   0000 1111           455699999999999 99999999999998764 


Q ss_pred             CCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh--hHHHHHHH----hCCCCCCCCCChHHHHHHHhcC
Q psy13765        223 QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT--DQLVNYLS----SVNLPCPKYHNPADFVIELASG  289 (606)
Q Consensus       223 ~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~--~~~~~~f~----~~g~~~~~~~~~ad~~~~~~~~  289 (606)
                      .+.++|+++|++....-.+.+|+      ..+...++  +++.++.+    ..|...+. ....+.+.+...+
T Consensus       163 ~~~~~Il~t~~~~~l~~~l~sR~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~l~~i~~~~~G  228 (354)
T 1sxj_E          163 KNIRLIMVCDSMSPIIAPIKSQC------LLIRCPAPSDSEISTILSDVVTNERIQLET-KDILKRIAQASNG  228 (354)
T ss_dssp             TTEEEEEEESCSCSSCHHHHTTS------EEEECCCCCHHHHHHHHHHHHHHHTCEECC-SHHHHHHHHHHTT
T ss_pred             CCCEEEEEeCCHHHHHHHHHhhc------eEEecCCcCHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHcCC
Confidence            36899999999874332333443      33444443  45555443    33443220 2334555555544

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.30  E-value=4.5e-14  Score=148.57  Aligned_cols=179  Identities=11%  Similarity=0.127  Sum_probs=116.5

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-----
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-----  103 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-----  103 (606)
                      |+.+|+++.+        +.+.+|+++|+++++|++++|+||||||||||+|+|+|+..+ .+|+|.+.|.+...     
T Consensus        30 ie~~~~~~~~--------~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~-~~g~v~i~~~d~~~~~~~~  100 (337)
T 2qm8_A           30 AESRRADHRA--------AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA-AGHKVAVLAVDPSSTRTGG  100 (337)
T ss_dssp             HTCSSHHHHH--------HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECGGGGSSCC
T ss_pred             HeeCCccccc--------ChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh-CCCEEEEEEEcCccccccc
Confidence            4556665542        346799999999999999999999999999999999998765 48999999865421     


Q ss_pred             --hhhcccEEEEccCCCCCCCCc-------------HHHH--HHH----------cCCcc-------ccCCc--cccCCh
Q psy13765        104 --NAFRRVSCYIQQDDRLQPLLT-------------IENV--MSL----------LGLDE-------SQNTR--SSQLSG  147 (606)
Q Consensus       104 --~~~~~~~~yv~Q~~~l~~~lt-------------v~~~--l~~----------~gl~~-------~~~~~--~~~lSg  147 (606)
                        ...++.+++++|++.+++..+             .+.+  ++.          .|+..       ..|..  +...+.
T Consensus       101 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~  180 (337)
T 2qm8_A          101 SILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGA  180 (337)
T ss_dssp             CSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC
T ss_pred             chHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCC
Confidence              124567899999988876421             1221  111          11111       00100  001122


Q ss_pred             HH-HHHHHHHHHHhcCCcccccCC----CCCCCCchhhhHHHHHHhhhc------CCcEEEEeCCCCCCCHHHHHHHHHH
Q psy13765        148 GQ-KKRLSIALELINNPRVMFLDE----PTTSNPNDQKKRLSIALELIN------NPRVMFLDEPTTGLDSQSCSQCIKL  216 (606)
Q Consensus       148 Gq-rqRv~ia~~L~~~~~~~~~de----~~~~~s~g~~krl~IA~aL~~------~P~lllLDEPTsgLD~~~~~~i~~~  216 (606)
                      |+ .|.+.  ..+...++++++..    +....|+|+++++..|++++.      +|++++    ||++|.....++.+.
T Consensus       181 ~~~~~~i~--~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~  254 (337)
T 2qm8_A          181 GDELQGIK--KGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSR  254 (337)
T ss_dssp             ------CC--TTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHH
T ss_pred             cccHHHHH--HHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHH
Confidence            22 11110  00112245554422    223467889999999999987      688887    999999999999999


Q ss_pred             HHHHHh
Q psy13765        217 LKMISQ  222 (606)
Q Consensus       217 l~~l~~  222 (606)
                      |.++.+
T Consensus       255 I~~~~~  260 (337)
T 2qm8_A          255 IEDHRS  260 (337)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988754

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.28  E-value=8.3e-13  Score=142.46  Aligned_cols=168  Identities=18%  Similarity=0.207  Sum_probs=95.8

Q ss_pred             ceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHH
Q psy13765         52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSL  131 (606)
Q Consensus        52 L~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~  131 (606)
                      -+++++++++|+.++|+|+|||||||||++|+|..+       .+.+.+..  .....+++|.+++.  ..+++.   +.
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~-------~i~~~~ft--Tl~p~~G~V~~~~~--~~~~l~---Dt  212 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP-------KIAPYPFT--TLSPNLGVVEVSEE--ERFTLA---DI  212 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC-------EECCCTTC--SSCCEEEEEECSSS--CEEEEE---EC
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc-------cccCcccc--eecceeeEEEecCc--ceEEEE---ec
Confidence            479999999999999999999999999999999743       23333221  22344666666541  001100   00


Q ss_pred             cCCccccCCccccCChHHHHHHHHHHHHhcCCccc--cc---CCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCC
Q psy13765        132 LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM--FL---DEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLD  206 (606)
Q Consensus       132 ~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~--~~---de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD  206 (606)
                      .|+...... ...+.. +..|     . +.+.+.+  +.   ++|...+|+|+++++.+|++|+.+|.++++    +++|
T Consensus       213 pGli~~a~~-~~~L~~-~fl~-----~-~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlD  280 (416)
T 1udx_A          213 PGIIEGASE-GKGLGL-EFLR-----H-IARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVD  280 (416)
T ss_dssp             CCCCCCGGG-SCCSCH-HHHH-----H-HTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCT
T ss_pred             cccccchhh-hhhhhH-HHHH-----H-HHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCC
Confidence            111110000 001110 0000     0 1111211  11   345555667777777777777778999999    9999


Q ss_pred             HHHHHHHHHHHHH-HHhCCCEEEEEecCCchHHHhhcceee
Q psy13765        207 SQSCSQCIKLLKM-ISQQGRTIICTIHQPSATLFQMFDQVY  246 (606)
Q Consensus       207 ~~~~~~i~~~l~~-l~~~g~tii~~~H~~~~~i~~~~D~v~  246 (606)
                      ...+ ..++.+++ +.+.|.+++.+|..-...+.++++.+.
T Consensus       281 l~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~  320 (416)
T 1udx_A          281 LLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEALH  320 (416)
T ss_dssp             TSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHH
T ss_pred             hhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHH
Confidence            9877 44444444 444577777666443445666666654

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=99.24  E-value=2.6e-14  Score=158.17  Aligned_cols=178  Identities=11%  Similarity=0.132  Sum_probs=110.2

Q ss_pred             cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCcc-CChhhhcccEEEEccCCCCCCCCcHHH
Q psy13765         49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINAFRRVSCYIQQDDRLQPLLTIEN  127 (606)
Q Consensus        49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~-~~~~~~~~~~~yv~Q~~~l~~~ltv~~  127 (606)
                      ..+++++++.+++|+.++|+|||||||||||++|+|+.++ .+|.|.++|.. .... ....++++.|........+..+
T Consensus       247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~-~~giitied~~E~~~~-~~~~v~~~~r~~~~~~~~~~~~  324 (511)
T 2oap_1          247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP-DAKVVSIEDTREIKLY-HENWIAEVTRTGMGEGEIDMYD  324 (511)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT-TCCEEEEESSCCCCCC-CSSEEEEECBCCSSSCCBCHHH
T ss_pred             HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC-CCCEEEEcCcccccCC-CCCeEEEEeecccccCCcCHHH
Confidence            4578999999999999999999999999999999999876 58999999864 2211 1344666666554223345544


Q ss_pred             HHHHcCCccccC-CccccCChHHHHHHHHHHHHhc--------------------CCcc------c-ccC---CCCCCCC
Q psy13765        128 VMSLLGLDESQN-TRSSQLSGGQKKRLSIALELIN--------------------NPRV------M-FLD---EPTTSNP  176 (606)
Q Consensus       128 ~l~~~gl~~~~~-~~~~~lSgGqrqRv~ia~~L~~--------------------~~~~------~-~~d---e~~~~~s  176 (606)
                      .+... |....| -.++++.+.|-..+ +..+...                    ++..      . .+|   .....+|
T Consensus       325 ~l~~~-LR~~PD~iivgEir~~E~~~~-l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s  402 (511)
T 2oap_1          325 LLRAA-LRQRPDYIIVGEVRGREAQTL-FQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR  402 (511)
T ss_dssp             HHHTT-GGGCCSEEEESCCCSTHHHHH-HHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred             HHHHh-hccCCCeEEeCCcCHHHHHHH-HHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence            44321 111111 11234444442211 1111101                    1100      0 111   1223468


Q ss_pred             chhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EecCCchHHHhhcc
Q psy13765        177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIIC--TIHQPSATLFQMFD  243 (606)
Q Consensus       177 ~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~--~~H~~~~~i~~~~D  243 (606)
                      +||+||+.+|.+           | |+|||+.+...+.+.+.++.++|.|+++  ++|+.+ ++.+.|+
T Consensus       403 ~G~~~R~~~ai~-----------E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~g  458 (511)
T 2oap_1          403 GNTRLRRTKEVN-----------E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFLG  458 (511)
T ss_dssp             SSCEEEEEEEEE-----------E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHHT
T ss_pred             CCCceEEEEEEE-----------E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHcC
Confidence            899888776521           7 9999998887777777777667889885  899876 4555554

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=99.14  E-value=6.1e-12  Score=124.62  Aligned_cols=59  Identities=20%  Similarity=0.128  Sum_probs=43.8

Q ss_pred             CCcEEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCCEEEEEecCCchH-------HHhhcceeeeecC
Q psy13765        192 NPRVMFLDEPTTGL--DSQSCSQCIKLLKMIS-QQGRTIICTIHQPSAT-------LFQMFDQVYLLSG  250 (606)
Q Consensus       192 ~P~lllLDEPTsgL--D~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~-------i~~~~D~v~~L~~  250 (606)
                      +|+++++|||++.+  |+....+.+..+.+++ +.|.||++++|.....       +.+.+|.++.|+.
T Consensus       128 ~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          128 NAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL  196 (247)
T ss_dssp             TCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred             CCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence            59999999999988  6655566666666664 4699999999986531       4577899999964

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=99.13  E-value=5.2e-11  Score=130.07  Aligned_cols=181  Identities=15%  Similarity=0.171  Sum_probs=122.0

Q ss_pred             cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcc-EEEECCccCChhhhcccEEEEccCCCCCCCCcHHH
Q psy13765         49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTG-QILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIEN  127 (606)
Q Consensus        49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G-~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~  127 (606)
                      -..|+++.+-+++|+++.|.|+||+|||||+..+++..... .| .|.+.+.+.+..++.+                  .
T Consensus       190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~s~~~l~~------------------r  250 (454)
T 2r6a_A          190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEMSAQQLVM------------------R  250 (454)
T ss_dssp             CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSSCHHHHHH------------------H
T ss_pred             cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCCCHHHHHH------------------H
Confidence            34688888889999999999999999999999998754321 23 3444333322222111                  1


Q ss_pred             HH-HHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhh--cCCcEEEEeCCCCC
Q psy13765        128 VM-SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELI--NNPRVMFLDEPTTG  204 (606)
Q Consensus       128 ~l-~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~--~~P~lllLDEPTsg  204 (606)
                      ++ ...|..... -+-+.++..+.+|+.-|...+...++.+.|.  ..+|.+|.+  +.++.+.  .+|+++++|+++..
T Consensus       251 ~~~~~~~~~~~~-l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~--~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~  325 (454)
T 2r6a_A          251 MLCAEGNINAQN-LRTGKLTPEDWGKLTMAMGSLSNAGIYIDDT--PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLI  325 (454)
T ss_dssp             HHHHHHTCCHHH-HHTSCCCHHHHHHHHHHHHHHHSSCEEEECC--TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGS
T ss_pred             HHHHHcCCCHHH-HhcCCCCHHHHHHHHHHHHHHhcCCEEEECC--CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHh
Confidence            11 112222100 0123578888888888777777767666664  467788776  5666665  68999999999997


Q ss_pred             CCH--------HHHHHHHHHHHHHHhC-CCEEEEEec---------C--Cc-------hHHHhhcceeeeecCCcE
Q psy13765        205 LDS--------QSCSQCIKLLKMISQQ-GRTIICTIH---------Q--PS-------ATLFQMFDQVYLLSGGQC  253 (606)
Q Consensus       205 LD~--------~~~~~i~~~l~~l~~~-g~tii~~~H---------~--~~-------~~i~~~~D~v~~L~~G~~  253 (606)
                      .++        ....++.+.|+.++++ |.+||+++|         +  |.       ..+...+|.|++|..++.
T Consensus       326 ~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~  401 (454)
T 2r6a_A          326 QGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY  401 (454)
T ss_dssp             CCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence            743        3346777888888865 999999999         2  43       136678999999987653

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.12  E-value=2.2e-13  Score=132.25  Aligned_cols=57  Identities=14%  Similarity=0.234  Sum_probs=43.6

Q ss_pred             HHH-hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765        185 IAL-ELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG  250 (606)
Q Consensus       185 IA~-aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~  250 (606)
                      +|+ +++.+|++++|||||+++|..+...+.+.|++..++    +...|.+     ..+|+++++++
T Consensus       116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~  173 (198)
T 1lvg_A          116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD  173 (198)
T ss_dssp             CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred             CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence            344 677779999999999999999999999998887653    2334621     56899988764

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.11  E-value=1.1e-12  Score=140.24  Aligned_cols=160  Identities=14%  Similarity=0.138  Sum_probs=108.4

Q ss_pred             EEeCCeEEEEECCCCCCHHHHHHHHhCCCC-----------CCCccEEEECCccCCh--h--hhcccE---EEEccCCCC
Q psy13765         58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYRS-----------NGVTGQILTNGHSRNI--N--AFRRVS---CYIQQDDRL  119 (606)
Q Consensus        58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~-----------~~~~G~I~~~G~~~~~--~--~~~~~~---~yv~Q~~~l  119 (606)
                      .+++|+.++|+|+||||||||+|+|+|...           .+..|.|.++|...+.  .  .-++.+   .++.+.+.+
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl   95 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   95 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence            568999999999999999999999999321           1257999998853211  0  112222   366676666


Q ss_pred             CCCCcHH-----HHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc--c----cCCCCCCCCchhhhHHHHHHh
Q psy13765        120 QPLLTIE-----NVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM--F----LDEPTTSNPNDQKKRLSIALE  188 (606)
Q Consensus       120 ~~~ltv~-----~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~--~----~de~~~~~s~g~~krl~IA~a  188 (606)
                      .+..+..     ..+..+                            .+.+.+  +    -|.+..+++++.         
T Consensus        96 ~~~~s~~e~L~~~fl~~i----------------------------r~~d~il~Vvd~~~d~~i~~v~~~~---------  138 (392)
T 1ni3_A           96 TKGASTGVGLGNAFLSHV----------------------------RAVDAIYQVVRAFDDAEIIHVEGDV---------  138 (392)
T ss_dssp             CCCCCSSSSSCHHHHHHH----------------------------TTCSEEEEEEECCCTTCSSCCSSSS---------
T ss_pred             ccCCcHHHHHHHHHHHHH----------------------------HHHHHHHHHHhccccceeeeecccc---------
Confidence            6554421     111111                            111110  0    022222333321         


Q ss_pred             hhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCCchHHHhhcceee-eecCC-cEEEEcChh
Q psy13765        189 LINNP--RVMFLDEPTTGLDSQSCSQCIKLLKMI-SQQGRTIICTIHQPSATLFQMFDQVY-LLSGG-QCLYQGATD  260 (606)
Q Consensus       189 L~~~P--~lllLDEPTsgLD~~~~~~i~~~l~~l-~~~g~tii~~~H~~~~~i~~~~D~v~-~L~~G-~~~~~G~~~  260 (606)
                         +|  +++++|||+.++|+.......+.++++ ++.|.|++  +|+.. .+.++||++. +|.+| ++++.|+.+
T Consensus       139 ---dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~G~~~~~~~~~~  209 (392)
T 1ni3_A          139 ---DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTETKQPIRKGDWS  209 (392)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred             ---CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhccCCceeecCCCC
Confidence               58  999999999999999999999999988 66677864  89865 5789999999 99999 988877653

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.08  E-value=2.6e-13  Score=140.95  Aligned_cols=92  Identities=12%  Similarity=0.160  Sum_probs=73.4

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEE-------------------eCCeEEEEECCCCCCHHHHHHHHhCCCC-
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRF-------------------PSNQLIAIMGPSGAGKSSLLDVLSGYRS-   87 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i-------------------~~Ge~~aIiGpsGaGKSTLL~~L~g~~~-   87 (606)
                      .|+++||++.|          .++++++++.+                   ++|++++|+||||||||||+++|+|+.. 
T Consensus        37 ~i~~~~v~~~y----------~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~  106 (308)
T 1sq5_A           37 DLSLEEVAEIY----------LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR  106 (308)
T ss_dssp             TCCHHHHHHTH----------HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT
T ss_pred             ccchHhHHHHH----------HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            37778888654          35899999988                   8999999999999999999999999765 


Q ss_pred             -CCCccEEEE---CCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHc
Q psy13765         88 -NGVTGQILT---NGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLL  132 (606)
Q Consensus        88 -~~~~G~I~~---~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~  132 (606)
                       + .+|+|.+   ||..... ..++.++++ |+..+++.+++.+.+..+
T Consensus       107 ~~-~~G~i~vi~~d~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~  152 (308)
T 1sq5_A          107 WP-EHRRVELITTDGFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFV  152 (308)
T ss_dssp             ST-TCCCEEEEEGGGGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred             CC-CCCeEEEEecCCccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence             4 4899999   8876543 334567888 877777888887766543

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.08  E-value=2.2e-13  Score=133.02  Aligned_cols=43  Identities=30%  Similarity=0.429  Sum_probs=34.0

Q ss_pred             EeCCeEEEEECCCCCCHHHHHHHHhCCCCCC--CccEEEECCccC
Q psy13765         59 FPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG--VTGQILTNGHSR  101 (606)
Q Consensus        59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~--~~G~I~~~G~~~  101 (606)
                      .++|++++|+||||||||||+++|+|+..+.  ..|.|.++|...
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~   63 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL   63 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence            5799999999999999999999999986531  246666665443

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=99.06  E-value=1e-12  Score=141.91  Aligned_cols=136  Identities=17%  Similarity=0.089  Sum_probs=84.8

Q ss_pred             cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-------hhhcccEEEEc-------
Q psy13765         49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-------NAFRRVSCYIQ-------  114 (606)
Q Consensus        49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-------~~~~~~~~yv~-------  114 (606)
                      +.+|+++ + .++|++++|+|||||||||||++|+|..++ .+|+|.++|.+...       ...++.+++++       
T Consensus       156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~-~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~  232 (418)
T 1p9r_A          156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS-SERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAI  232 (418)
T ss_dssp             HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC-TTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHH
T ss_pred             HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC-CCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHH
Confidence            3467777 4 389999999999999999999999998766 48999998876531       12334455655       


Q ss_pred             --cCCCCC--CC----CcHHHHHHHcCCccc-cCCccccCC-hHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765        115 --QDDRLQ--PL----LTIENVMSLLGLDES-QNTRSSQLS-GGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS  184 (606)
Q Consensus       115 --Q~~~l~--~~----ltv~~~l~~~gl~~~-~~~~~~~lS-gGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~  184 (606)
                        |++...  +.    .|+.+.+....-.+. ..+ ...-+ ..-.+|+.   .+ .-++.    .....|||||+||  
T Consensus       233 Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~t-lh~~~~~~~i~rL~---~l-gl~~~----~~~~~LSgg~~QR--  301 (418)
T 1p9r_A          233 LRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMST-LHTNTAVGAVTRLR---DM-GIEPF----LISSSLLGVLAQR--  301 (418)
T ss_dssp             GGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEE-ECCSSSHHHHHHHH---HH-TCCHH----HHHHHEEEEEEEE--
T ss_pred             hccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccc-cchhhHHHHHHHHH---Hc-CCcHH----HHHHHHHHHHHHH--
Confidence              887652  33    467666654321110 000 01011 11122221   11 11111    1345689999999  


Q ss_pred             HHHhhhcCCcEEEE
Q psy13765        185 IALELINNPRVMFL  198 (606)
Q Consensus       185 IA~aL~~~P~lllL  198 (606)
                      ||++|+.+|++..-
T Consensus       302 LaraL~~~p~~~~~  315 (418)
T 1p9r_A          302 LVRTLCPDCKEPYE  315 (418)
T ss_dssp             EEEEECTTTCEEEE
T ss_pred             hhhhhcCCCCccCC
Confidence            99999999999763

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=99.03  E-value=4.2e-11  Score=123.30  Aligned_cols=131  Identities=15%  Similarity=0.112  Sum_probs=75.5

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHc---CCcc
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLL---GLDE  136 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~---gl~~  136 (606)
                      +++.+++|.||||||||||.+.|++...+  .|      .     . ++.+.+|+||+.+++....+++....   ++..
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~--~g------~-----~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~   94 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME--KY------G-----G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQ   94 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHH--HH------G-----G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhh--cC------C-----C-CceEEEeccccccCChHHHHHHhccccccchhh
Confidence            57899999999999999999999997643  22      0     1 34566679999887642222221110   0000


Q ss_pred             ccCCccccCChHHHHHHHHHHHHhcCC-----cccccCCCCCCCCchhhhHHHHH--HhhhcCCcEEEEeCCCCCCCHHH
Q psy13765        137 SQNTRSSQLSGGQKKRLSIALELINNP-----RVMFLDEPTTSNPNDQKKRLSIA--LELINNPRVMFLDEPTTGLDSQS  209 (606)
Q Consensus       137 ~~~~~~~~lSgGqrqRv~ia~~L~~~~-----~~~~~de~~~~~s~g~~krl~IA--~aL~~~P~lllLDEPTsgLD~~~  209 (606)
                      ..+ .+...-  ...-......|-..-     .-.....-...+||||++|+.+|  +++  +|+|+|+||||+++|+..
T Consensus        95 ~~g-~p~a~d--~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~  169 (290)
T 1odf_A           95 GRG-LPGTHD--MKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL  169 (290)
T ss_dssp             SSC-STTSBC--HHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred             hcc-CcchhH--HHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence            000 011111  011111112222210     00111122345789999999987  555  899999999999999864

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=99.02  E-value=3.7e-10  Score=119.17  Aligned_cols=66  Identities=15%  Similarity=0.109  Sum_probs=44.4

Q ss_pred             CcEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCEEEEEecCCch---------------HHHh
Q psy13765        193 PRVMFLDEPTTGL----------DS---QSCSQCIKLLKMI----SQQGRTIICTIHQPSA---------------TLFQ  240 (606)
Q Consensus       193 P~lllLDEPTsgL----------D~---~~~~~i~~~l~~l----~~~g~tii~~~H~~~~---------------~i~~  240 (606)
                      |+++++|||++.+          |+   ..++.+.+.++++    ++.|.|||++.|....               .+..
T Consensus       140 ~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~  219 (349)
T 2zr9_A          140 LDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKF  219 (349)
T ss_dssp             CSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHH
T ss_pred             CCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhh
Confidence            9999999999988          33   2223445555555    3459999999996431               2556


Q ss_pred             hcceeeeecCCcEEEEcC
Q psy13765        241 MFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       241 ~~D~v~~L~~G~~~~~G~  258 (606)
                      .+|.++.++.++++..|+
T Consensus       220 ~ad~~l~lrr~~~~k~g~  237 (349)
T 2zr9_A          220 YASVRLDVRRIETLKDGT  237 (349)
T ss_dssp             HCSEEEEEEEEEEECSSS
T ss_pred             ccceEEEEEEeeeeecCc
Confidence            889888888776654444

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.01  E-value=2.3e-13  Score=138.96  Aligned_cols=130  Identities=18%  Similarity=0.232  Sum_probs=81.1

Q ss_pred             cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---hhhcccEEEEccCC-CCCCC
Q psy13765         47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---NAFRRVSCYIQQDD-RLQPL  122 (606)
Q Consensus        47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~~~yv~Q~~-~l~~~  122 (606)
                      +.+.+++++++.+++|  ++|+||||||||||+++|+|...   .|.|.++|.+...   .+.++.+++++|+. ...|.
T Consensus        31 ~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~---~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~  105 (274)
T 2x8a_A           31 RNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG---LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC  105 (274)
T ss_dssp             HSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT---CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred             hCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC---CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence            3456899999999999  99999999999999999999764   3799999976421   23345577777764 33444


Q ss_pred             CcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCC
Q psy13765        123 LTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPT  202 (606)
Q Consensus       123 ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPT  202 (606)
                      +++.+-++.+.-.     +...-+ +...|+              .++....+||||+||+.|++|+..+|++|  |||+
T Consensus       106 i~~~Deid~~~~~-----r~~~~~-~~~~~~--------------~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al  163 (274)
T 2x8a_A          106 VIFFDEVDALCPR-----RSDRET-GASVRV--------------VNQLLTEMDGLEARQQVFIMAATNRPDII--DPAI  163 (274)
T ss_dssp             EEEEETCTTTCC---------------CTTH--------------HHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred             eEeeehhhhhhcc-----cCCCcc-hHHHHH--------------HHHHHHhhhcccccCCEEEEeecCChhhC--CHhh
Confidence            3321111111100     000000 000010              11112236788888888999999999975  8886


Q ss_pred             C
Q psy13765        203 T  203 (606)
Q Consensus       203 s  203 (606)
                      .
T Consensus       164 ~  164 (274)
T 2x8a_A          164 L  164 (274)
T ss_dssp             H
T ss_pred             c
Confidence            4

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.00  E-value=4.6e-11  Score=123.66  Aligned_cols=123  Identities=13%  Similarity=0.132  Sum_probs=71.6

Q ss_pred             EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEE---CCccCCh--hhhc-ccEEEEccCCCCC-----CCCcHHH
Q psy13765         59 FPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILT---NGHSRNI--NAFR-RVSCYIQQDDRLQ-----PLLTIEN  127 (606)
Q Consensus        59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~---~G~~~~~--~~~~-~~~~yv~Q~~~l~-----~~ltv~~  127 (606)
                      +.+|++++|+||||||||||+|+|+ ...+ .+|+|.+   +|++...  ..++ +.+|||+|++.+.     +.+|+++
T Consensus       162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~-~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~e~  239 (302)
T 2yv5_A          162 YLEGFICILAGPSGVGKSSILSRLT-GEEL-RTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKPRE  239 (302)
T ss_dssp             HTTTCEEEEECSTTSSHHHHHHHHH-SCCC-CCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCGGG
T ss_pred             hccCcEEEEECCCCCCHHHHHHHHH-HhhC-cccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCHHH
Confidence            4579999999999999999999999 7766 5899999   8876532  1222 3689999998664     6788877


Q ss_pred             HHHHcC-Ccc--ccCCccccCChHH-HHHHHHHHHHhcCCccc--ccCCCCCCCCchhhhHHHHHHh
Q psy13765        128 VMSLLG-LDE--SQNTRSSQLSGGQ-KKRLSIALELINNPRVM--FLDEPTTSNPNDQKKRLSIALE  188 (606)
Q Consensus       128 ~l~~~g-l~~--~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~--~~de~~~~~s~g~~krl~IA~a  188 (606)
                      +...++ +..  |....  ..+..| +.++.-|.+   .-.+-  ..+.+...+||.++|+++|||+
T Consensus       240 l~~~f~~~~~~~c~~~~--~~~~~e~~~~v~~~l~---~~~L~~~~~~~~~~~ls~~~~R~~~~~~~  301 (302)
T 2yv5_A          240 VRNYFREFLRYQCKYPD--CTHTNEPGCAVKEAVK---NGEISCERYKSYLKIIKVYLEEIKELCRE  301 (302)
T ss_dssp             GGGGCGGGHHHHHHSTT--CCSSSCTTCHHHHHHH---TTSSCHHHHHHHHHHTTCCCTTHHHHSSC
T ss_pred             HHHHHHHHHHccCCCCC--CCCCCCCCCHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            644433 000  10000  001111 122322222   22221  2344555689999999999974

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.94  E-value=3.9e-10  Score=116.87  Aligned_cols=46  Identities=15%  Similarity=0.169  Sum_probs=38.0

Q ss_pred             eeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCcc
Q psy13765         54 NLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS  100 (606)
Q Consensus        54 ~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~  100 (606)
                      .+++..++|++++|+|||||||||+++.|++...+ ..|+|.+.+.+
T Consensus        96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~-~g~kV~lv~~D  141 (306)
T 1vma_A           96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD-EGKSVVLAAAD  141 (306)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEEC
T ss_pred             CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh-cCCEEEEEccc
Confidence            34556789999999999999999999999998754 36788887654

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.91  E-value=2.2e-09  Score=110.61  Aligned_cols=119  Identities=14%  Similarity=0.141  Sum_probs=77.2

Q ss_pred             eeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHc
Q psy13765         53 KNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLL  132 (606)
Q Consensus        53 ~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~  132 (606)
                      ++++++  +|++++++|+||+||||++..|++...+ ..|+|.+.+.+........      |         .....+..
T Consensus        91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~-~~~~v~l~~~d~~~~~~~~------q---------l~~~~~~~  152 (295)
T 1ls1_A           91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPAARE------Q---------LRLLGEKV  152 (295)
T ss_dssp             CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH-TTCCEEEEECCSSCHHHHH------H---------HHHHHHHH
T ss_pred             ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEecCCcccHhHHH------H---------HHHhcccC
Confidence            678888  9999999999999999999999998654 3688988876543211110      0         01122333


Q ss_pred             CCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCC-CCCCCHHHHH
Q psy13765        133 GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP-TTGLDSQSCS  211 (606)
Q Consensus       133 gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEP-TsgLD~~~~~  211 (606)
                      |+.......  ...-.+.+|.+                              |+.+...+++++++||| +.|+|.....
T Consensus       153 ~l~~~~~~~--~~~p~~l~~~~------------------------------l~~~~~~~~D~viiDtpp~~~~d~~~~~  200 (295)
T 1ls1_A          153 GVPVLEVMD--GESPESIRRRV------------------------------EEKARLEARDLILVDTAGRLQIDEPLMG  200 (295)
T ss_dssp             TCCEEECCT--TCCHHHHHHHH------------------------------HHHHHHHTCCEEEEECCCCSSCCHHHHH
T ss_pred             CeEEEEcCC--CCCHHHHHHHH------------------------------HHHHHhCCCCEEEEeCCCCccccHHHHH
Confidence            443221100  01122333444                              44444455999999999 9999998888


Q ss_pred             HHHHHHHHHH
Q psy13765        212 QCIKLLKMIS  221 (606)
Q Consensus       212 ~i~~~l~~l~  221 (606)
                      ++.+..+.+.
T Consensus       201 ~l~~~~~~~~  210 (295)
T 1ls1_A          201 ELARLKEVLG  210 (295)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHhhhcC
Confidence            8877776653

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.88  E-value=4.9e-12  Score=125.20  Aligned_cols=39  Identities=15%  Similarity=0.198  Sum_probs=22.9

Q ss_pred             cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHh-CCCC
Q psy13765         49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLS-GYRS   87 (606)
Q Consensus        49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~-g~~~   87 (606)
                      .+..+++|+++++|++++|+||||||||||+++|+ |+.+
T Consensus        14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~   53 (231)
T 3lnc_A           14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN   53 (231)
T ss_dssp             --------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred             hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            46789999999999999999999999999999999 9863

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.87  E-value=2.4e-09  Score=110.46  Aligned_cols=153  Identities=14%  Similarity=0.179  Sum_probs=88.6

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHH----cCCc
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSL----LGLD  135 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~----~gl~  135 (606)
                      ++|++++++||||+||||+++.|++...+ .+|               +.+.++.+|..   ..+..+.+..    .|+.
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~-~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~~~gl~  163 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISML-EKH---------------KKIAFITTDTY---RIAAVEQLKTYAELLQAP  163 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHH-TTC---------------CCEEEEECCCS---STTHHHHHHHHHTTTTCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHH-hcC---------------CEEEEEecCcc---cchHHHHHHHHHHhcCCC
Confidence            57999999999999999999999997643 135               23555555542   1222222222    2221


Q ss_pred             cccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHH
Q psy13765        136 ESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIK  215 (606)
Q Consensus       136 ~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~  215 (606)
                      ...     ..+. +.-+.+                              |+  .+.+|+++|+|  |+|+|+.....+.+
T Consensus       164 ~~~-----~~~~-~~l~~a------------------------------l~--~~~~~dlvIiD--T~G~~~~~~~~~~e  203 (296)
T 2px0_A          164 LEV-----CYTK-EEFQQA------------------------------KE--LFSEYDHVFVD--TAGRNFKDPQYIDE  203 (296)
T ss_dssp             CCB-----CSSH-HHHHHH------------------------------HH--HGGGSSEEEEE--CCCCCTTSHHHHHH
T ss_pred             eEe-----cCCH-HHHHHH------------------------------HH--HhcCCCEEEEe--CCCCChhhHHHHHH
Confidence            110     0111 111222                              22  22569999999  99999877655555


Q ss_pred             HHHHHH---hCCCEEEE-EecCCchHHHhhcceeeeecCCcEEEEcC-----hhHHHHHHHhCCCC
Q psy13765        216 LLKMIS---QQGRTIIC-TIHQPSATLFQMFDQVYLLSGGQCLYQGA-----TDQLVNYLSSVNLP  272 (606)
Q Consensus       216 ~l~~l~---~~g~tii~-~~H~~~~~i~~~~D~v~~L~~G~~~~~G~-----~~~~~~~f~~~g~~  272 (606)
                      +.+-+.   ..+.++++ ++|+.. ++.+.+|++..+..+.++...-     ...+.+.....|.|
T Consensus       204 l~~~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~giVltk~D~~~~~g~~~~~~~~~~~p  268 (296)
T 2px0_A          204 LKETIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQYIFTKIDETTSLGSVFNILAESKIG  268 (296)
T ss_dssp             HHHHSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCEEEEECTTTCSCCHHHHHHHHTCSCC
T ss_pred             HHHHHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCEEEEeCCCcccchhHHHHHHHHHCcC
Confidence            444332   12334444 478754 5778889887777777776431     12444555555544

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.86  E-value=9.5e-10  Score=120.30  Aligned_cols=51  Identities=14%  Similarity=0.040  Sum_probs=47.0

Q ss_pred             cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC
Q psy13765         49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR  101 (606)
Q Consensus        49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~  101 (606)
                      ..+|+|+|+++++ |+++|+|||||||||||++|+|+.++ .+|+|.++|++.
T Consensus        17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~I~~~g~~~   67 (483)
T 3euj_A           17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIP-DLTLLNFRNTTE   67 (483)
T ss_dssp             ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCC-CTTTCCCCCTTS
T ss_pred             cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCC-CCCEEEECCEEc
Confidence            4589999999999 99999999999999999999999876 589999999764

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.84  E-value=2.4e-11  Score=127.31  Aligned_cols=168  Identities=15%  Similarity=0.201  Sum_probs=100.6

Q ss_pred             cccccceeeeEEEeCC-------eEEEEECCCCCCHHHHHHHHhCCCCC---CCccEEEECCccCCh--hhh-cccEEEE
Q psy13765         47 EPKDVLKNLCGRFPSN-------QLIAIMGPSGAGKSSLLDVLSGYRSN---GVTGQILTNGHSRNI--NAF-RRVSCYI  113 (606)
Q Consensus        47 ~~~~iL~~vs~~i~~G-------e~~aIiGpsGaGKSTLL~~L~g~~~~---~~~G~I~~~G~~~~~--~~~-~~~~~yv  113 (606)
                      +.+.+++++++.+++|       +.++|.||||+|||||+++|+|....   ..+|.+..++.+...  ... ++.+.++
T Consensus        29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~i  108 (334)
T 1in4_A           29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFI  108 (334)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEE
T ss_pred             CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEE
Confidence            4457899999999887       89999999999999999999997521   135655555433211  112 4568999


Q ss_pred             ccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcC
Q psy13765        114 QQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINN  192 (606)
Q Consensus       114 ~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~  192 (606)
                      +|.+.+.+  ++++.+... ++......+  ++.|+ .+++.   ..+....+...+.+...+|+|+|+|+.++      
T Consensus       109 DE~~~l~~--~~~e~L~~~-~~~~~~~i~--~~~~~~~~~i~---~~l~~~~li~at~~~~~Ls~~l~sR~~l~------  174 (334)
T 1in4_A          109 DEIHRLNK--AVEELLYSA-IEDFQIDIM--IGKGPSAKSIR---IDIQPFTLVGATTRSGLLSSPLRSRFGII------  174 (334)
T ss_dssp             ETGGGCCH--HHHHHHHHH-HHTSCCCC--------------------CCCEEEEEESCGGGSCHHHHTTCSEE------
T ss_pred             cchhhcCH--HHHHHHHHH-HHhccccee--eccCccccccc---ccCCCeEEEEecCCcccCCHHHHHhcCce------
Confidence            99888765  676665321 111100000  11122 22221   12222222234555567888888888644      


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcce
Q psy13765        193 PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQ  244 (606)
Q Consensus       193 P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~  244 (606)
                                .+||+.+..++.++|++.++. |     +.|+++ .+..++++
T Consensus       175 ----------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~-~~~~ia~~  211 (334)
T 1in4_A          175 ----------LELDFYTVKELKEIIKRAASLMD-----VEIEDA-AAEMIAKR  211 (334)
T ss_dssp             ----------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHH-HHHHHHHT
T ss_pred             ----------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHH-HHHHHHHh
Confidence                      688999999999999988753 4     246643 34445543

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.82  E-value=1.1e-09  Score=113.11  Aligned_cols=61  Identities=18%  Similarity=0.331  Sum_probs=40.0

Q ss_pred             EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEE---CCccCCh--hhhc-ccEEEEccCCCC
Q psy13765         58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILT---NGHSRNI--NAFR-RVSCYIQQDDRL  119 (606)
Q Consensus        58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~---~G~~~~~--~~~~-~~~~yv~Q~~~l  119 (606)
                      ++.+|++++|+||||||||||+|+|+|+..+ .+|+|.+   +|+....  ..++ +.+|||+|++.+
T Consensus       165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~-~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~  231 (301)
T 1u0l_A          165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKL-RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGF  231 (301)
T ss_dssp             HHHSSSEEEEECSTTSSHHHHHHHHSTTCCC-C-------------CCCSCCEEECTTSCEEESSCSS
T ss_pred             HHhcCCeEEEECCCCCcHHHHHHHhcccccc-cccceecccCCCCCceeeeEEEEcCCCCEEEECcCC
Confidence            4567999999999999999999999999876 5899999   8876432  1122 358999999853

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.79  E-value=6.4e-10  Score=125.72  Aligned_cols=155  Identities=13%  Similarity=0.131  Sum_probs=96.3

Q ss_pred             cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHH
Q psy13765         47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIE  126 (606)
Q Consensus        47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~  126 (606)
                      +...+++++++.+++|+.++|+||||+|||||+++|++..++...|.+.+++.+.+  .....++++++...       +
T Consensus        45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~--~~~p~i~~~p~g~~-------~  115 (604)
T 3k1j_A           45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED--ENMPRIKTVPACQG-------R  115 (604)
T ss_dssp             SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC--TTSCEEEEEETTHH-------H
T ss_pred             CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc--ccCCcEEEEecchH-------H
Confidence            45678999999999999999999999999999999999987644588999887653  23456778776431       1


Q ss_pred             HHHHHc------------------CC--------cccc--CCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCch
Q psy13765        127 NVMSLL------------------GL--------DESQ--NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPND  178 (606)
Q Consensus       127 ~~l~~~------------------gl--------~~~~--~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g  178 (606)
                      ++++..                  .+        .++.  ....-.-.+-.      ...|...  +-.-.+..+.++.|
T Consensus       116 ~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~------~~~L~G~--~~~~~~~~g~~~~g  187 (604)
T 3k1j_A          116 RIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAH------AGALLGD--VRHDPFQSGGLGTP  187 (604)
T ss_dssp             HHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCC------HHHHHCE--ECCCCC----CCCC
T ss_pred             HHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCC------HHhcCce--EEechhhcCCcccc
Confidence            110000                  00        0000  00000000000      0111111  00001112456777


Q ss_pred             hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy13765        179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKM  219 (606)
Q Consensus       179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~  219 (606)
                      +++++..++....++.+||+||... |++.....+.+.|++
T Consensus       188 ~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~  227 (604)
T 3k1j_A          188 AHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE  227 (604)
T ss_dssp             GGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred             ccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence            7888778888888899999999988 898888888777763

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.72  E-value=1.1e-09  Score=105.53  Aligned_cols=65  Identities=22%  Similarity=0.193  Sum_probs=45.6

Q ss_pred             eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---hhhcccEEEEccCCCCCCCCcH
Q psy13765         56 CGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---NAFRRVSCYIQQDDRLQPLLTI  125 (606)
Q Consensus        56 s~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~~~yv~Q~~~l~~~ltv  125 (606)
                      |+++++|++++|+||||||||||+++|+|+.+     .+.+++.....   ...++.++|++|++..++.+++
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVK   68 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHh
Confidence            56788999999999999999999999999853     35666643221   2235668899998776655443

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.69  E-value=5.3e-11  Score=121.16  Aligned_cols=125  Identities=17%  Similarity=0.311  Sum_probs=77.5

Q ss_pred             ccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhhhcccEEEEccCCC-CCCCC
Q psy13765         48 PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INAFRRVSCYIQQDDR-LQPLL  123 (606)
Q Consensus        48 ~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~~~~~~~yv~Q~~~-l~~~l  123 (606)
                      ...+++++++.+++|  ++|+||||+|||||+++|++...   .|.|.++|.+..   ....++.+++++|+.. ..+.+
T Consensus        61 ~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i  135 (278)
T 1iy2_A           61 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI  135 (278)
T ss_dssp             CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred             CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC---CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence            346789999999999  89999999999999999999753   689999886421   1122344666777643 34444


Q ss_pred             cH-HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcE
Q psy13765        124 TI-ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRV  195 (606)
Q Consensus       124 tv-~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~l  195 (606)
                      ++ +|+ +.++....     ...+++....-.....++.            .+||||+||+.|++++..+|++
T Consensus       136 ~~iDei-d~l~~~~~-----~~~~~~~~~~~~~~~~ll~------------~lsgg~~~~~~i~~a~t~~p~~  190 (278)
T 1iy2_A          136 VFIDEI-DAVGRKRG-----SGVGGGNDEREQTLNQLLV------------EMDGFEKDTAIVVMAATNRPDI  190 (278)
T ss_dssp             EEEETH-HHHHCC-------------CHHHHHHHHHHHH------------HHTTCCTTCCEEEEEEESCTTS
T ss_pred             Eehhhh-Hhhhcccc-----cccCCcchHHHHHHHHHHH------------HHhCCCCCCCEEEEEecCCchh
Confidence            43 333 22221110     0111111111122223332            2688999999999999999976

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.69  E-value=2.5e-08  Score=105.22  Aligned_cols=155  Identities=14%  Similarity=0.098  Sum_probs=87.5

Q ss_pred             cceeee--EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEE-EECCccCChhhhcccEEEEccCCCCCCCCcHHH
Q psy13765         51 VLKNLC--GRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQI-LTNGHSRNINAFRRVSCYIQQDDRLQPLLTIEN  127 (606)
Q Consensus        51 iL~~vs--~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I-~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~  127 (606)
                      -|+.+-  +-+++|+++.|.||||+|||||+..+++.... ..|.+ ++++.........+.+|+.+|+..+....++++
T Consensus        48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~-~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~  126 (356)
T 3hr8_A           48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK-MGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQ  126 (356)
T ss_dssp             HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHH
T ss_pred             HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHH
Confidence            344433  36899999999999999999999999876432 23544 566544322223344555554433333333333


Q ss_pred             HHHHcCCccccCCccccCChHHHHHHHHHHHHh--cCCcccccCCCCCCCC-------chhhhHHHHHHhhhcCCcEEEE
Q psy13765        128 VMSLLGLDESQNTRSSQLSGGQKKRLSIALELI--NNPRVMFLDEPTTSNP-------NDQKKRLSIALELINNPRVMFL  198 (606)
Q Consensus       128 ~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~--~~~~~~~~de~~~~~s-------~g~~krl~IA~aL~~~P~lllL  198 (606)
                      +                        +.+++.++  .++++++.|+-..-.+       .|++++...|+++.        
T Consensus       127 ~------------------------l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la--------  174 (356)
T 3hr8_A          127 A------------------------LEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMS--------  174 (356)
T ss_dssp             H------------------------HHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHH--------
T ss_pred             H------------------------HHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHH--------
Confidence            2                        23333333  2444444444333322       13444444444432        


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCc---------------hHHHhhcceeeeecCC
Q psy13765        199 DEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPS---------------ATLFQMFDQVYLLSGG  251 (606)
Q Consensus       199 DEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~---------------~~i~~~~D~v~~L~~G  251 (606)
                                   ++++.|+.++++ |.|||++.|-..               ..+...+|-++.++.+
T Consensus       175 -------------~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k~  230 (356)
T 3hr8_A          175 -------------QALRKIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRG  230 (356)
T ss_dssp             -------------HHHHHHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEEE
T ss_pred             -------------HHHHHHHHHHHhcCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEec
Confidence                         456666677664 889988877611               1244678888888753

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.67  E-value=6.4e-11  Score=118.66  Aligned_cols=129  Identities=18%  Similarity=0.325  Sum_probs=79.0

Q ss_pred             ccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhhhcccEEEEccCCC-CCCCC
Q psy13765         48 PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INAFRRVSCYIQQDDR-LQPLL  123 (606)
Q Consensus        48 ~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~~~~~~~yv~Q~~~-l~~~l  123 (606)
                      ...+++++++.+++|  ++|+||||+|||||+++|++...   .|.+.++|.+..   ....++.+++++|+.. ..+.+
T Consensus        37 ~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i  111 (254)
T 1ixz_A           37 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI  111 (254)
T ss_dssp             CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred             CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC---CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence            346899999999999  99999999999999999999753   688999885421   1122344566676542 33444


Q ss_pred             cH-HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCC
Q psy13765        124 TI-ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP  201 (606)
Q Consensus       124 tv-~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEP  201 (606)
                      ++ +|+ +.++....     ...++++..+-.....++..            +||||+||+.|++++..+|++  +|++
T Consensus       112 ~~~Dei-d~l~~~~~-----~~~~~~~~~~~~~~~~ll~~------------l~g~~~~~~~i~~a~t~~p~~--ld~~  170 (254)
T 1ixz_A          112 VFIDEI-DAVGRKRG-----SGVGGGNDEREQTLNQLLVE------------MDGFEKDTAIVVMAATNRPDI--LDPA  170 (254)
T ss_dssp             EEEETH-HHHHC--------------CHHHHHHHHHHHHH------------HHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred             EEehhh-hhhhcccC-----ccccccchHHHHHHHHHHHH------------HhCCCCCCCEEEEEccCCchh--CCHH
Confidence            33 332 22211110     01112222222223333332            578899999999999999987  5554

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.64  E-value=8.8e-11  Score=125.06  Aligned_cols=161  Identities=12%  Similarity=0.163  Sum_probs=90.1

Q ss_pred             cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCC-CCCCc---
Q psy13765         49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRL-QPLLT---  124 (606)
Q Consensus        49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l-~~~lt---  124 (606)
                      ..+++++++.+++|++++|.||||||||||+++|+|.    ..|++.....+.  ..++..+++++|...+ ++..+   
T Consensus       156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~----~~g~~~~~~~~~--~~~~~~lg~~~q~~~~l~dd~~~~~  229 (377)
T 1svm_A          156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL----CGGKALNVNLPL--DRLNFELGVAIDQFLVVFEDVKGTG  229 (377)
T ss_dssp             HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH----HCCEEECCSSCT--TTHHHHHGGGTTCSCEEETTCCCST
T ss_pred             HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh----cCCcEEEEeccc--hhHHHHHHHhcchhHHHHHHHHHHH
Confidence            4689999999999999999999999999999999985    257766522111  1122235566665421 11111   


Q ss_pred             -----------------HHHHHHH---cCCc-------------cccCCccccCChHHHHHHHHHHHHhcCCcccc-cCC
Q psy13765        125 -----------------IENVMSL---LGLD-------------ESQNTRSSQLSGGQKKRLSIALELINNPRVMF-LDE  170 (606)
Q Consensus       125 -----------------v~~~l~~---~gl~-------------~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~-~de  170 (606)
                                       +.+.+..   ..+.             ...+.....+++|+++|+..+.++...|++++ +|+
T Consensus       230 ~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~  309 (377)
T 1svm_A          230 GESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLER  309 (377)
T ss_dssp             TTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHT
T ss_pred             HHHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeC
Confidence                             1222210   0011             01122233466777777766555566666653 666


Q ss_pred             CCCCCCchhhhHHHHH-HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy13765        171 PTTSNPNDQKKRLSIA-LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ  222 (606)
Q Consensus       171 ~~~~~s~g~~krl~IA-~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~  222 (606)
                      |+..+    ++|+.-. +...   .++++|||+...++.-...+.+.++.+..
T Consensus       310 ~~~~l----~~RL~~Rg~t~~---~~l~~~~~~~dy~~~l~~~~~~w~~~l~~  355 (377)
T 1svm_A          310 SEFLL----EKRIIQSGIALL---LMLIWYRPVAEFAQSIQSRIVEWKERLDK  355 (377)
T ss_dssp             CTHHH----HTTCTTCHHHHH---HHHHHHSCGGGSCGGGHHHHHHHHHHHHH
T ss_pred             CHHHH----HHHHHHcCccHH---HhhhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            66532    1111100 0000   02346777777777777777777666654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.63  E-value=3.2e-09  Score=101.50  Aligned_cols=37  Identities=16%  Similarity=0.237  Sum_probs=32.9

Q ss_pred             hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy13765        181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKM  219 (606)
Q Consensus       181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~  219 (606)
                      +...+|++++.+|+++++|  ||++|.....++++.|.+
T Consensus       152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~  188 (191)
T 1oix_A          152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT  188 (191)
T ss_dssp             SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence            4567889999999999999  999999999999988865

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.61  E-value=1.2e-09  Score=108.26  Aligned_cols=74  Identities=12%  Similarity=0.122  Sum_probs=49.8

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---  102 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---  102 (606)
                      ...|+++|++..+        + .      ++++++ ++++|+|||||||||||++|+|...+ .+|+|.++|.+..   
T Consensus         7 ~~~l~l~~~~~~~--------~-~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~-~~G~i~~~g~~~~~~~   69 (227)
T 1qhl_A            7 FRSLTLINWNGFF--------A-R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP-DLTLLHFRNTTEAGAT   69 (227)
T ss_dssp             EEEEEEEEETTEE--------E-E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC-CTTTC-----------
T ss_pred             eeEEEEEeeeccc--------C-C------EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc-CCCeEEECCEEcccCC
Confidence            3467788876442        1 1      456666 89999999999999999999999876 4899999997641   


Q ss_pred             --------hhhhcccEEEEccC
Q psy13765        103 --------INAFRRVSCYIQQD  116 (606)
Q Consensus       103 --------~~~~~~~~~yv~Q~  116 (606)
                              ....++.++||+|+
T Consensus        70 ~~~~~~~~~~~~~~~i~~v~~~   91 (227)
T 1qhl_A           70 SGSRDKGLHGKLKAGVCYSMLD   91 (227)
T ss_dssp             -------CGGGBCSSEEEEEEE
T ss_pred             ccccccchhhHhhcCcEEEEEe
Confidence                    11235678999985

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.60  E-value=8.7e-09  Score=106.64  Aligned_cols=71  Identities=20%  Similarity=0.199  Sum_probs=43.5

Q ss_pred             EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEE---CCccCCh-hh-hcccEEEEccCCCCCC----CCcHHH
Q psy13765         57 GRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILT---NGHSRNI-NA-FRRVSCYIQQDDRLQP----LLTIEN  127 (606)
Q Consensus        57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~---~G~~~~~-~~-~~~~~~yv~Q~~~l~~----~ltv~~  127 (606)
                      +++.+|++++|+||||+|||||+|+|+|...+ .+|+|.+   +|+.... .. ++..++|++|.+.+.+    .+|+++
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~e~  246 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGL-RTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEEEE  246 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCHHH
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhcccccc-cccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCHHH
Confidence            45679999999999999999999999998766 5899998   7765432 12 2222799999998765    678866


Q ss_pred             H
Q psy13765        128 V  128 (606)
Q Consensus       128 ~  128 (606)
                      +
T Consensus       247 l  247 (307)
T 1t9h_A          247 L  247 (307)
T ss_dssp             H
T ss_pred             H
Confidence            6

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=98.59  E-value=2.5e-09  Score=117.77  Aligned_cols=50  Identities=20%  Similarity=0.280  Sum_probs=37.3

Q ss_pred             HHHhhhcCCc-EEEEeCCCCCCCHHHHHHHHHHHHHHHh----CCCEEEEEecCCc
Q psy13765        185 IALELINNPR-VMFLDEPTTGLDSQSCSQCIKLLKMISQ----QGRTIICTIHQPS  235 (606)
Q Consensus       185 IA~aL~~~P~-lllLDEPTsgLD~~~~~~i~~~l~~l~~----~g~tii~~~H~~~  235 (606)
                      +|+++...|. ++++||++.-+|.. ..++.+.+.++++    .|.++|++||+|+
T Consensus       289 ~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~  343 (512)
T 2ius_A          289 QHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS  343 (512)
T ss_dssp             -CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred             cccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence            5666777798 78999999988843 3455666666654    2779999999998

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.56  E-value=1.4e-07  Score=103.38  Aligned_cols=113  Identities=20%  Similarity=0.334  Sum_probs=71.6

Q ss_pred             ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHH
Q psy13765         50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVM  129 (606)
Q Consensus        50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l  129 (606)
                      ..++++++.+++|  +.|.||||+|||||+++|++....+   -+.+++....                  .        
T Consensus        39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~---f~~is~~~~~------------------~--------   87 (476)
T 2ce7_A           39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP---FFHISGSDFV------------------E--------   87 (476)
T ss_dssp             HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC---EEEEEGGGTT------------------T--------
T ss_pred             HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC---eeeCCHHHHH------------------H--------
Confidence            3566777777777  7899999999999999999853211   1222221100                  0        


Q ss_pred             HHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCC--------
Q psy13765        130 SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP--------  201 (606)
Q Consensus       130 ~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEP--------  201 (606)
                                ..++  .+++++|..++.+....                              |.+||+||+        
T Consensus        88 ----------~~~g--~~~~~~r~lf~~A~~~~------------------------------p~ILfIDEid~l~~~r~  125 (476)
T 2ce7_A           88 ----------LFVG--VGAARVRDLFAQAKAHA------------------------------PCIVFIDEIDAVGRHRG  125 (476)
T ss_dssp             ----------CCTT--HHHHHHHHHHHHHHHTC------------------------------SEEEEEETGGGTCCC--
T ss_pred             ----------HHhc--ccHHHHHHHHHHHHhcC------------------------------CCEEEEechhhhhhhcc
Confidence                      0001  25566666655554444                              999999999        


Q ss_pred             --CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCCc
Q psy13765        202 --TTGLDSQSCSQCIKLLKMIS----QQGRTIICTIHQPS  235 (606)
Q Consensus       202 --TsgLD~~~~~~i~~~l~~l~----~~g~tii~~~H~~~  235 (606)
                        ++|.|......+.+++..+.    ..+..||.++|+|.
T Consensus       126 ~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~  165 (476)
T 2ce7_A          126 AGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD  165 (476)
T ss_dssp             -------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred             cccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence              44677777777777777764    24789999999974

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=98.39  E-value=1.6e-07  Score=98.42  Aligned_cols=156  Identities=16%  Similarity=0.183  Sum_probs=102.1

Q ss_pred             ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHH
Q psy13765         50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVM  129 (606)
Q Consensus        50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l  129 (606)
                      .-|+.+.+-+++|+++.|.|++|+|||||+.-++..... ..+.|.                |+.=      .++.+++.
T Consensus        34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~Vl----------------~fSl------Ems~~ql~   90 (338)
T 4a1f_A           34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-DDRGVA----------------VFSL------EMSAEQLA   90 (338)
T ss_dssp             HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCEEE----------------EEES------SSCHHHHH
T ss_pred             hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEE----------------EEeC------CCCHHHHH
Confidence            457777777999999999999999999999888753211 112232                2211      12333333


Q ss_pred             HHc-----CCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhh--c-CCcEEEEeCC
Q psy13765        130 SLL-----GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELI--N-NPRVMFLDEP  201 (606)
Q Consensus       130 ~~~-----gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~--~-~P~lllLDEP  201 (606)
                      ..+     +++.. +-+-+.||.++.+|+..|...+.++++.+.|+|..+  -.  .-.+.++.+.  . +++++++|--
T Consensus        91 ~Rlls~~~~v~~~-~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s--i~--~i~~~ir~l~~~~gg~~lIVIDyL  165 (338)
T 4a1f_A           91 LRALSDLTSINMH-DLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR--IE--QIRLQLRKLKSQHKELGIAFIDYL  165 (338)
T ss_dssp             HHHHHHHHCCCHH-HHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC--HH--HHHHHHHHHHHHCTTEEEEEEEEE
T ss_pred             HHHHHHhhCCCHH-HHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc--HH--HHHHHHHHHHHhcCCCCEEEEech
Confidence            221     22111 011246999999999999999999999999987543  22  3334444443  2 6899999965


Q ss_pred             CCCCCHH-------HHHHHHHHHHHHHhC-CCEEEEEecC
Q psy13765        202 TTGLDSQ-------SCSQCIKLLKMISQQ-GRTIICTIHQ  233 (606)
Q Consensus       202 TsgLD~~-------~~~~i~~~l~~l~~~-g~tii~~~H~  233 (606)
                      ..=-.+.       ...++.+.|+.++++ +.+||+++|-
T Consensus       166 qlm~~~~~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQl  205 (338)
T 4a1f_A          166 QLMSGSKATKERHEQIAEISRELKTLARELEIPIIALVQL  205 (338)
T ss_dssp             ECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred             HHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCeEEEEEec
Confidence            5422221       245678888888876 8999999885

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.39  E-value=4.6e-08  Score=93.77  Aligned_cols=38  Identities=18%  Similarity=0.234  Sum_probs=32.4

Q ss_pred             HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy13765        182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMIS  221 (606)
Q Consensus       182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~  221 (606)
                      ....|++++.+|+++++|  ||++|.....++.+.|.+..
T Consensus       129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~  166 (199)
T 2f9l_A          129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI  166 (199)
T ss_dssp             CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence            345688888889999999  99999999999998887653

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=98.38  E-value=3.3e-07  Score=95.07  Aligned_cols=172  Identities=15%  Similarity=0.146  Sum_probs=107.2

Q ss_pred             ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHH
Q psy13765         50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVM  129 (606)
Q Consensus        50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l  129 (606)
                      .-|+++.+-+++|+++.|.|++|+|||||+..++.....  .|               ..+.|+.=+      ++.+++.
T Consensus        56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~--~g---------------~~vl~~slE------~s~~~l~  112 (315)
T 3bh0_A           56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD--ND---------------DVVNLHSLE------MGKKENI  112 (315)
T ss_dssp             HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT--TT---------------CEEEEEESS------SCHHHHH
T ss_pred             HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--cC---------------CeEEEEECC------CCHHHHH
Confidence            457887777999999999999999999998877642111  11               123333221      2333332


Q ss_pred             HH-----cCCc--cccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhh--cCCc--EEEE
Q psy13765        130 SL-----LGLD--ESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELI--NNPR--VMFL  198 (606)
Q Consensus       130 ~~-----~gl~--~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~--~~P~--lllL  198 (606)
                      ..     .+++  +..+.. ..||.++++|+..|...+.++++.+.|+|..+  -  ..-.+.++.+.  .+++  ++++
T Consensus       113 ~R~~~~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--~--~~i~~~i~~l~~~~~~~~~lVVI  187 (315)
T 3bh0_A          113 KRLIVTAGSINAQKIKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS--V--NYIWSKTRQTKRKNPGKRVIVMI  187 (315)
T ss_dssp             HHHHHHHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB--H--HHHHHHHHHHHHTSSSCCEEEEE
T ss_pred             HHHHHHHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC--H--HHHHHHHHHHHHhcCCCCeEEEE
Confidence            22     1222  221111 12899999999999999988888888887533  2  22233344443  3577  9999


Q ss_pred             eCCCCC------CCH-HHHHHHHHHHHHHHhC-CCEEEEEecCCc------------------hHHHhhcceeeeec
Q psy13765        199 DEPTTG------LDS-QSCSQCIKLLKMISQQ-GRTIICTIHQPS------------------ATLFQMFDQVYLLS  249 (606)
Q Consensus       199 DEPTsg------LD~-~~~~~i~~~l~~l~~~-g~tii~~~H~~~------------------~~i~~~~D~v~~L~  249 (606)
                      |--+.=      -+. ....++.+.|++++++ |.+|++++|-..                  ..+...+|-|+.|.
T Consensus       188 D~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~dlr~sg~ie~~aD~vi~L~  264 (315)
T 3bh0_A          188 DYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLY  264 (315)
T ss_dssp             ECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEEEECCCGGGTTSSSCCCCGGGGTTTSHHHHHCSEEEEEE
T ss_pred             eCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEeecCcccccCCCCCCCHHHhhhhhhhHhhCCEEEEEe
Confidence            965421      111 2335667778888775 999999988431                  12556677777774

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.35  E-value=2.7e-07  Score=87.07  Aligned_cols=37  Identities=27%  Similarity=0.373  Sum_probs=33.2

Q ss_pred             cc--eeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC
Q psy13765         51 VL--KNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN   88 (606)
Q Consensus        51 iL--~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~   88 (606)
                      .+  +++++.+.+| +++|+||||||||||+++|.+...+
T Consensus        14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~   52 (182)
T 3kta_A           14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG   52 (182)
T ss_dssp             GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence            56  7899999999 9999999999999999999987543

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=98.33  E-value=1.9e-07  Score=108.34  Aligned_cols=74  Identities=16%  Similarity=0.159  Sum_probs=49.4

Q ss_pred             hhhhHHHHHHhhhcCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-ecCCchHHHhhcceeeee-cCCc
Q psy13765        178 DQKKRLSIALELINNPRVMFLDEPTT-GLDSQSCSQCIKLLKMISQQGRTIICT-IHQPSATLFQMFDQVYLL-SGGQ  252 (606)
Q Consensus       178 g~~krl~IA~aL~~~P~lllLDEPTs-gLD~~~~~~i~~~l~~l~~~g~tii~~-~H~~~~~i~~~~D~v~~L-~~G~  252 (606)
                      |+.+|..++..++.+++++++|||.. +||......+++.+.......++|+++ ||++. .+.+++++..++ ..|+
T Consensus       194 G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~vi~v~gr  270 (773)
T 2xau_A          194 GMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPLLAVPGR  270 (773)
T ss_dssp             HHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCEEECCCC
T ss_pred             HHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCcccccCc
Confidence            33333334445566699999999996 999887777776666554456778885 88765 566777765444 3454

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.31  E-value=3.1e-08  Score=95.53  Aligned_cols=58  Identities=14%  Similarity=0.138  Sum_probs=40.2

Q ss_pred             eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChh--hhcccEEEEccCCC
Q psy13765         56 CGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNIN--AFRRVSCYIQQDDR  118 (606)
Q Consensus        56 s~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~~~  118 (606)
                      ....++|++++|+||||||||||+++|++..     |.+.++|.+....  ..+...++++|++.
T Consensus        23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~   82 (200)
T 4eun_A           23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET-----GLEFAEADAFHSPENIATMQRGIPLTDED   82 (200)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHHH-----CCEEEEGGGGSCHHHHHHHHTTCCCCHHH
T ss_pred             hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-----CCeEEcccccccHHHHHHHhcCCCCCCcc
Confidence            4566799999999999999999999999863     7889988654321  11234577777643

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.31  E-value=4.4e-08  Score=98.52  Aligned_cols=52  Identities=15%  Similarity=0.277  Sum_probs=35.8

Q ss_pred             EEEEEee-EEEEecCCcccccccccceeeeEEEeC---CeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         28 EIKFKDL-TYTVSTGLGFKQEPKDVLKNLCGRFPS---NQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        28 ~l~~~nl-~~~~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++++|+ +++|.       +.+.+|+|+|+++++   |+.++|+|++||||||+.++|++.+
T Consensus        17 ~l~~~~~~~~~~~-------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           17 LLETGSLLHSPFD-------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             ----------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             ceEEcceeeEEec-------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            6899999 98862       346799999999999   9999999999999999999999853

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.30  E-value=1.1e-06  Score=92.80  Aligned_cols=125  Identities=13%  Similarity=0.107  Sum_probs=76.2

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNT  140 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~  140 (606)
                      ..-.++++|+||+|||||+|.|+|....       ..+.+....  ...++.+.++...         +...+.....+.
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~-------~~~~~~~t~--~~~~~~~~~~~~~---------~~l~Dt~G~~~~  227 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAKPE-------IASYPFTTR--GINVGQFEDGYFR---------YQIIDTPGLLDR  227 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSCCE-------EECCTTCSS--CEEEEEEEETTEE---------EEEEECTTTSSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCc-------cCCCCCeee--ceeEEEEEecCce---------EEEEeCCCcccc
Confidence            4558999999999999999999986421       111111111  1123334332110         000111112223


Q ss_pred             ccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEe-CCCCCCCHHHHHHHHHHHHH
Q psy13765        141 RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLD-EPTTGLDSQSCSQCIKLLKM  219 (606)
Q Consensus       141 ~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLD-EPTsgLD~~~~~~i~~~l~~  219 (606)
                      ....+|++|+|++. +.+                              ...++-++++| +|++|+|......+++.+++
T Consensus       228 ~~~~~~~~~~~~~~-~~~------------------------------~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~  276 (357)
T 2e87_A          228 PISERNEIEKQAIL-ALR------------------------------YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHG  276 (357)
T ss_dssp             CSTTSCHHHHHHHH-GGG------------------------------GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHH
T ss_pred             chhhhhHHHHHHHH-HHH------------------------------hcCCEEEEEEeCCccccCCHHHHHHHHHHHHH
Confidence            44567888887664 222                              22337789999 99999999988888877776


Q ss_pred             HHhCCCEEEEEe--cCCc
Q psy13765        220 ISQQGRTIICTI--HQPS  235 (606)
Q Consensus       220 l~~~g~tii~~~--H~~~  235 (606)
                      ... +..+|++.  ||..
T Consensus       277 ~~~-~~piilV~NK~Dl~  293 (357)
T 2e87_A          277 EFK-DLPFLVVINKIDVA  293 (357)
T ss_dssp             HTT-TSCEEEEECCTTTC
T ss_pred             hcC-CCCEEEEEECcccC
Confidence            543 77888888  7754

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=98.28  E-value=1.9e-06  Score=93.52  Aligned_cols=156  Identities=17%  Similarity=0.157  Sum_probs=100.8

Q ss_pred             ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHH
Q psy13765         50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVM  129 (606)
Q Consensus        50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l  129 (606)
                      .-|+.+.+-+++|+++.|.|++|+|||||..-++...... .|               ..+.|+.=+      ++.+++.
T Consensus       188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g---------------~~vl~~slE------~~~~~l~  245 (444)
T 2q6t_A          188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK-EG---------------VGVGIYSLE------MPAAQLT  245 (444)
T ss_dssp             HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TC---------------CCEEEEESS------SCHHHHH
T ss_pred             HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CC---------------CeEEEEECC------CCHHHHH
Confidence            3577777779999999999999999999998877532110 11               112332211      2233322


Q ss_pred             H-----HcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhh--cCCcEEEEeCCC
Q psy13765        130 S-----LLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELI--NNPRVMFLDEPT  202 (606)
Q Consensus       130 ~-----~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~--~~P~lllLDEPT  202 (606)
                      .     ..+++.. .-+-+.++..+.+|+.-|...+.+.++.+.|.|.  ++..+  ..+.++.+.  .+|+++++|..+
T Consensus       246 ~R~~~~~~~i~~~-~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s~~~--l~~~~~~l~~~~~~~lIvID~l~  320 (444)
T 2q6t_A          246 LRMMCSEARIDMN-RVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPD--LTLME--VRARARRLVSQNQVGLIIIDYLQ  320 (444)
T ss_dssp             HHHHHHHTTCCTT-TCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTT--CBHHH--HHHHHHHHHHHSCCCEEEEECGG
T ss_pred             HHHHHHHcCCCHH-HHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHH--HHHHHHHHHHHcCCCEEEEcChh
Confidence            2     1233221 1122569999999999888888877787777653  33333  334555554  589999999987


Q ss_pred             CCCCH----------HHHHHHHHHHHHHHhC-CCEEEEEec
Q psy13765        203 TGLDS----------QSCSQCIKLLKMISQQ-GRTIICTIH  232 (606)
Q Consensus       203 sgLD~----------~~~~~i~~~l~~l~~~-g~tii~~~H  232 (606)
                      .-.+.          ....++.+.|+.++++ |.+||+++|
T Consensus       321 ~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsq  361 (444)
T 2q6t_A          321 LMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQ  361 (444)
T ss_dssp             GCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred             hcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence            64332          1224677778888775 899999988

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.23  E-value=3e-07  Score=88.28  Aligned_cols=31  Identities=29%  Similarity=0.384  Sum_probs=27.1

Q ss_pred             EEeCCeEEEEECCCCCCHHHHHHHHhCCCCC
Q psy13765         58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN   88 (606)
Q Consensus        58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~   88 (606)
                      ++++|++++|+|||||||||++++|++...+
T Consensus         2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~   32 (207)
T 2j41_A            2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPST   32 (207)
T ss_dssp             --CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence            6789999999999999999999999998744

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.22  E-value=2.5e-08  Score=96.23  Aligned_cols=53  Identities=21%  Similarity=0.210  Sum_probs=43.5

Q ss_pred             cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEE--EECCccC
Q psy13765         47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQI--LTNGHSR  101 (606)
Q Consensus        47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I--~~~G~~~  101 (606)
                      +.....+.++...++|++++|+|||||||||++++|++.+.  ..|.+  +++|...
T Consensus        10 ~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~--~~G~~~~~~d~d~~   64 (200)
T 3uie_A           10 CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY--QKGKLCYILDGDNV   64 (200)
T ss_dssp             CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEHHHH
T ss_pred             cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCceEEEecCchh
Confidence            44556777888889999999999999999999999999764  25777  8887543

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.22  E-value=9.3e-07  Score=93.65  Aligned_cols=148  Identities=16%  Similarity=0.135  Sum_probs=79.7

Q ss_pred             CCeE-EEEECCCCCCHHHHHHHHhCCCCC----------CCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHH--
Q psy13765         61 SNQL-IAIMGPSGAGKSSLLDVLSGYRSN----------GVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIEN--  127 (606)
Q Consensus        61 ~Ge~-~aIiGpsGaGKSTLL~~L~g~~~~----------~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~--  127 (606)
                      +|-. ++|+|++|||||||+|.|+|....          ..+|.|.++|.+..   +....|++.|.+.    ..++.  
T Consensus       177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~----~lve~f~  249 (364)
T 2qtf_A          177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPP----QIVDAFF  249 (364)
T ss_dssp             --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCG----GGHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCH----HHHHHHH
Confidence            4544 999999999999999999997531          24688988885431   2233455444221    12222  


Q ss_pred             -HHHHcCCccccCCc--cccCChHH------HHHH-HHHHHHh-cCCcccccCCCCCCCCchhhhHHHHH----Hhh-hc
Q psy13765        128 -VMSLLGLDESQNTR--SSQLSGGQ------KKRL-SIALELI-NNPRVMFLDEPTTSNPNDQKKRLSIA----LEL-IN  191 (606)
Q Consensus       128 -~l~~~gl~~~~~~~--~~~lSgGq------rqRv-~ia~~L~-~~~~~~~~de~~~~~s~g~~krl~IA----~aL-~~  191 (606)
                       .++.+.   ..|-.  +-..|...      .+.+ .+...+- .+.++++.......+|+++++++.++    +++ ..
T Consensus       250 ~tl~~~~---~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~  326 (364)
T 2qtf_A          250 VTLSEAK---YSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSP  326 (364)
T ss_dssp             HHHHGGG---GSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSC
T ss_pred             HHHHHHH---hCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCC
Confidence             222111   01111  11222211      1111 1222221 22223322233334567777777776    555 44


Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy13765        192 NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ  222 (606)
Q Consensus       192 ~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~  222 (606)
                      +|++    +|+|++|.....++.+.|.++..
T Consensus       327 ~~~~----~~~SA~~g~gi~~L~~~I~~~l~  353 (364)
T 2qtf_A          327 IFDV----IPISALKRTNLELLRDKIYQLAT  353 (364)
T ss_dssp             EEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred             CCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence            4554    89999999999999999987654

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.21  E-value=1.3e-07  Score=95.00  Aligned_cols=64  Identities=20%  Similarity=0.225  Sum_probs=47.8

Q ss_pred             ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHh---CCCCCCCccEEE--------ECCccCC----hhhhcccEEEEc
Q psy13765         50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLS---GYRSNGVTGQIL--------TNGHSRN----INAFRRVSCYIQ  114 (606)
Q Consensus        50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~---g~~~~~~~G~I~--------~~G~~~~----~~~~~~~~~yv~  114 (606)
                      .++++.+   ++|++++|+|||||||||++++|+   |+..+ .+|.+.        .+|.+..    ...+++.+++++
T Consensus        18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~-d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   93 (252)
T 4e22_A           18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLL-DSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRF   93 (252)
T ss_dssp             -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE-EHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEE
T ss_pred             hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC-CCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEE
Confidence            3455544   789999999999999999999999   88655 489998        8886542    345677889998


Q ss_pred             cCC
Q psy13765        115 QDD  117 (606)
Q Consensus       115 Q~~  117 (606)
                      |++
T Consensus        94 ~~~   96 (252)
T 4e22_A           94 VSQ   96 (252)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            864

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.21  E-value=1.9e-07  Score=90.12  Aligned_cols=127  Identities=13%  Similarity=0.199  Sum_probs=69.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccc
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSS  143 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~  143 (606)
                      +++|+|||||||||+.+.|+++      |...+++-     .+.+.+.   +    ....++.++.+.+|....      
T Consensus         4 ~i~l~G~~GsGKST~~~~La~l------g~~~id~d-----~~~~~~~---~----~~~~~~~~i~~~~g~~~~------   59 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTDL------GVPLVDAD-----VVAREVV---A----KDSPLLSKIVEHFGAQIL------   59 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHTT------TCCEEEHH-----HHHHHTT---C----SSCHHHHHHHHHHCTTCC------
T ss_pred             EEEEECCCCCCHHHHHHHHHHC------CCcccchH-----HHHHHHc---c----CChHHHHHHHHHhCHHHh------
Confidence            6899999999999999999983      33344431     1111110   0    012245666677665332      


Q ss_pred             cCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy13765        144 QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ  223 (606)
Q Consensus       144 ~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~  223 (606)
                       .+.|+.+|..++.....+|+.              +++                +  ++.++|.....+.+.++..  .
T Consensus        60 -~~~g~~~r~~l~~~~f~~~~~--------------~~~----------------l--~~~~~p~v~~~~~~~~~~~--~  104 (206)
T 1jjv_A           60 -TEQGELNRAALRERVFNHDED--------------KLW----------------L--NNLLHPAIRERMKQKLAEQ--T  104 (206)
T ss_dssp             -------CHHHHHHHHHTCHHH--------------HHH----------------H--HHHHHHHHHHHHHHHHHTC--C
T ss_pred             -ccCccccHHHHHHHHhCCHHH--------------HHH----------------H--HhccCHHHHHHHHHHHHhc--C
Confidence             256778888877776666321              111                1  2234555555554444322  3


Q ss_pred             CCEEEEEecCCchH-HHhhcceeeeec
Q psy13765        224 GRTIICTIHQPSAT-LFQMFDQVYLLS  249 (606)
Q Consensus       224 g~tii~~~H~~~~~-i~~~~D~v~~L~  249 (606)
                      +.++|+.+|..... +...||.+++++
T Consensus       105 ~~~vv~~~~~l~e~~~~~~~d~vi~l~  131 (206)
T 1jjv_A          105 APYTLFVVPLLIENKLTALCDRILVVD  131 (206)
T ss_dssp             SSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred             CCEEEEEechhhhcCcHhhCCEEEEEE
Confidence            56888888875432 245678877774

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.20  E-value=4.1e-06  Score=87.97  Aligned_cols=43  Identities=14%  Similarity=0.071  Sum_probs=35.4

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCCc
Q psy13765        192 NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ---QGRTIICTIHQPS  235 (606)
Q Consensus       192 ~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~---~g~tii~~~H~~~  235 (606)
                      +|.++++||+... |......+.+.+.++..   .+.++|+++|++.
T Consensus       125 ~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~  170 (389)
T 1fnn_A          125 LYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA  170 (389)
T ss_dssp             CCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred             CeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence            3889999999876 88888888888877665   5789999999874

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.19  E-value=2e-06  Score=93.31  Aligned_cols=96  Identities=13%  Similarity=0.175  Sum_probs=63.9

Q ss_pred             CCcEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeee-ecCCcEEEEcChh--HHHH---
Q psy13765        192 NPRVMFLDEPTTGLDS-QSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYL-LSGGQCLYQGATD--QLVN---  264 (606)
Q Consensus       192 ~P~lllLDEPTsgLD~-~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~-L~~G~~~~~G~~~--~~~~---  264 (606)
                      +|++|++||+..-.+. .++..+...+..+.+.|+.||+++|++...+..+.+++.- +..|.++..++++  +..+   
T Consensus       194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~  273 (440)
T 2z4s_A          194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIAR  273 (440)
T ss_dssp             TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHH
T ss_pred             CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHH
Confidence            4999999999887664 6778888999988888999999999865443234444443 4567777777653  3333   


Q ss_pred             -HHHhCCCCCCCCCChHHHHHHHhcC
Q psy13765        265 -YLSSVNLPCPKYHNPADFVIELASG  289 (606)
Q Consensus       265 -~f~~~g~~~~~~~~~ad~~~~~~~~  289 (606)
                       ..+..|...++  +..+++.+...+
T Consensus       274 ~~~~~~~~~i~~--e~l~~la~~~~g  297 (440)
T 2z4s_A          274 KMLEIEHGELPE--EVLNFVAENVDD  297 (440)
T ss_dssp             HHHHHHTCCCCT--THHHHHHHHCCS
T ss_pred             HHHHHcCCCCCH--HHHHHHHHhcCC
Confidence             33444554433  456666655543

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.19  E-value=4.9e-08  Score=107.47  Aligned_cols=130  Identities=18%  Similarity=0.314  Sum_probs=81.3

Q ss_pred             cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---hhhcccEEEEccCCC-CCCCCc
Q psy13765         49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---NAFRRVSCYIQQDDR-LQPLLT  124 (606)
Q Consensus        49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~~~yv~Q~~~-l~~~lt  124 (606)
                      ..+++++++.+++|  +.|+||||+|||||+++|++...   .+.+.++|.+...   ....+.+..++|+.. ..|...
T Consensus        53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~---~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il  127 (499)
T 2dhr_A           53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV  127 (499)
T ss_dssp             GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT---CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEE
T ss_pred             hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC---CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEE
Confidence            45788999999999  89999999999999999999753   5789998865321   112234556666643 233332


Q ss_pred             H-HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCC
Q psy13765        125 I-ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTT  203 (606)
Q Consensus       125 v-~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTs  203 (606)
                      + +|+ +.++..     +...+.+++..+-.....|+..            +|||++++..|+.+...+|++  |||+..
T Consensus       128 ~IDEI-d~l~~~-----r~~~~~~~~~e~~~~l~~LL~~------------Ldg~~~~~~viviAatn~p~~--LD~aLl  187 (499)
T 2dhr_A          128 FIDEI-DAVGRK-----RGSGVGGGNDEREQTLNQLLVE------------MDGFEKDTAIVVMAATNRPDI--LDPALL  187 (499)
T ss_dssp             EEECG-GGTCCC-----SSSSTTTSSHHHHHHHHHHHHH------------GGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred             EEehH-HHHHHh-----hccCcCCCcHHHHHHHHHHHHH------------hcccccCccEEEEEecCChhh--cCcccc
Confidence            2 222 112211     1111223332222222333332            578888888899999999987  888764

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.18  E-value=2.9e-07  Score=105.01  Aligned_cols=131  Identities=11%  Similarity=0.091  Sum_probs=76.8

Q ss_pred             eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC-CCccEEEECCccC---ChhhhcccEEEEccCCCCCCCCcHHHHHHH
Q psy13765         56 CGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN-GVTGQILTNGHSR---NINAFRRVSCYIQQDDRLQPLLTIENVMSL  131 (606)
Q Consensus        56 s~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~-~~~G~I~~~G~~~---~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~  131 (606)
                      |+.+++|+.++|+|++|+|||||++.|++.... ...|+| .+|...   ...+.++.+++.+|...+... ++      
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~------   74 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GH------   74 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TE------
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CE------
Confidence            356789999999999999999999999965432 236777 555432   223345566666665443321 00      


Q ss_pred             cCCccccCCccc-cCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHH
Q psy13765        132 LGLDESQNTRSS-QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSC  210 (606)
Q Consensus       132 ~gl~~~~~~~~~-~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~  210 (606)
                        .....|+... .++ .+..                                  ...-..++.++++| |+.|+|+.+.
T Consensus        75 --~~nliDTpG~~~f~-~~~~----------------------------------~~l~~ad~~ilVvD-~~~g~~~qt~  116 (665)
T 2dy1_A           75 --RVFLLDAPGYGDFV-GEIR----------------------------------GALEAADAALVAVS-AEAGVQVGTE  116 (665)
T ss_dssp             --EEEEEECCCSGGGH-HHHH----------------------------------HHHHHCSEEEEEEE-TTTCSCHHHH
T ss_pred             --EEEEEeCCCccchH-HHHH----------------------------------HHHhhcCcEEEEEc-CCcccchhHH
Confidence              0011122111 011 1111                                  11112347889999 9999998876


Q ss_pred             HHHHHHHHHHHhCCCEEEEEecCCch
Q psy13765        211 SQCIKLLKMISQQGRTIICTIHQPSA  236 (606)
Q Consensus       211 ~~i~~~l~~l~~~g~tii~~~H~~~~  236 (606)
                          +.++.+.+.|..+|++.|..+.
T Consensus       117 ----~~~~~~~~~~ip~ilv~NKiD~  138 (665)
T 2dy1_A          117 ----RAWTVAERLGLPRMVVVTKLDK  138 (665)
T ss_dssp             ----HHHHHHHHTTCCEEEEEECGGG
T ss_pred             ----HHHHHHHHccCCEEEEecCCch
Confidence                3344444568888899998653

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.17  E-value=1.9e-06  Score=89.70  Aligned_cols=49  Identities=14%  Similarity=0.245  Sum_probs=42.1

Q ss_pred             ceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC
Q psy13765         52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR  101 (606)
Q Consensus        52 L~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~  101 (606)
                      ++++++++++|++++|+||||+||||++..|++...+ ..|+|.+.+.+.
T Consensus        95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~-~g~kVllid~D~  143 (320)
T 1zu4_A           95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE-LGYKVLIAAADT  143 (320)
T ss_dssp             -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCC
T ss_pred             ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence            3789999999999999999999999999999998654 378898877654

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.05  E-value=1.1e-06  Score=83.38  Aligned_cols=39  Identities=13%  Similarity=0.260  Sum_probs=31.0

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG   98 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G   98 (606)
                      .+|++++|+||||||||||++.|++..++...|.|....
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~tt   41 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTT   41 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEEC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccC
Confidence            369999999999999999999999976533456665443

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.05  E-value=1.8e-06  Score=83.07  Aligned_cols=40  Identities=23%  Similarity=0.097  Sum_probs=24.4

Q ss_pred             cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      +...+++|||+++++|++++|+||+||||||+.+.|++..
T Consensus        10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            4457899999999999999999999999999999999753

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.03  E-value=2.1e-06  Score=90.44  Aligned_cols=34  Identities=35%  Similarity=0.605  Sum_probs=27.5

Q ss_pred             cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ..+|++++++++   .++|+|++|||||||+|.|+|.
T Consensus        24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~   57 (360)
T 3t34_A           24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK   57 (360)
T ss_dssp             SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred             ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence            458999999988   8999999999999999999995

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.01  E-value=2.3e-06  Score=88.15  Aligned_cols=153  Identities=16%  Similarity=0.170  Sum_probs=80.8

Q ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCc
Q psy13765         62 NQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTR  141 (606)
Q Consensus        62 Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~  141 (606)
                      +..++|+|++|+|||||+|.|.|....     + ..+.+..  ...+..+++.+++.-+.               ..|+.
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~~~-----i-~s~~~~t--Tr~~~~gi~~~~~~~i~---------------~iDTp   64 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQKIS-----I-TSRKAQT--TRHRIVGIHTEGAYQAI---------------YVDTP   64 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEE-----E-CCCCSSC--CSSCEEEEEEETTEEEE---------------EESSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcc-----c-cCCCCCc--ceeeEEEEEEECCeeEE---------------EEECc
Confidence            448999999999999999999986311     0 1111111  12344566666532100               01111


Q ss_pred             ccc-CC-hHH-HHHHHHHHHHhcCCccc--ccCCCCCCCCchhhhHHHHHHhhh--cCCcEEEEeCCCCCCCHHH-HHHH
Q psy13765        142 SSQ-LS-GGQ-KKRLSIALELINNPRVM--FLDEPTTSNPNDQKKRLSIALELI--NNPRVMFLDEPTTGLDSQS-CSQC  213 (606)
Q Consensus       142 ~~~-lS-gGq-rqRv~ia~~L~~~~~~~--~~de~~~~~s~g~~krl~IA~aL~--~~P~lllLDEPTsgLD~~~-~~~i  213 (606)
                      ... -. ... +.....+...+.+.++.  +.|- .. +++|++   .++..+.  ..|.++++    +.+|... ...+
T Consensus        65 G~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~-~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~  135 (301)
T 1ega_A           65 GLHMEEKRAINRLMNKAASSSIGDVELVIFVVEG-TR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADL  135 (301)
T ss_dssp             SCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEET-TC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHH
T ss_pred             CCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeC-CC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHH
Confidence            000 00 000 00000111122333442  2332 22 555554   3444444  56999999    7899877 6677


Q ss_pred             HHHHHHHHhC-CC--EEEEEecCCchHHHhhcceeee
Q psy13765        214 IKLLKMISQQ-GR--TIICTIHQPSATLFQMFDQVYL  247 (606)
Q Consensus       214 ~~~l~~l~~~-g~--tii~~~H~~~~~i~~~~D~v~~  247 (606)
                      .+.++++++. |.  .+.++.|+-. .+..++|.+.-
T Consensus       136 ~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~~  171 (301)
T 1ega_A          136 LPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVRK  171 (301)
T ss_dssp             HHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHHT
T ss_pred             HHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHHH
Confidence            8888888764 43  5666777654 46677777653

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.98  E-value=3e-05  Score=78.83  Aligned_cols=27  Identities=22%  Similarity=0.410  Sum_probs=23.8

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++.-+.|.||+|+|||||.+++++..
T Consensus        52 ~~~~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           52 APAKGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            467789999999999999999999753

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.97  E-value=1.1e-05  Score=84.54  Aligned_cols=29  Identities=24%  Similarity=0.283  Sum_probs=26.5

Q ss_pred             EEEeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         57 GRFPSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +-+++|+++.|.||+|+|||||+..++..
T Consensus       117 GGl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          117 GGIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999999988764

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.94  E-value=2.6e-06  Score=83.95  Aligned_cols=40  Identities=20%  Similarity=0.263  Sum_probs=34.8

Q ss_pred             eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCcc
Q psy13765         56 CGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS  100 (606)
Q Consensus        56 s~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~  100 (606)
                      +...++|++++|.||||||||||+++|+|.     .|+|.+++.+
T Consensus        14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-----~g~v~~~~~~   53 (230)
T 2vp4_A           14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-----KNDICLLTEP   53 (230)
T ss_dssp             BTTTCCCEEEEEECSTTSCHHHHHHTTGGG-----TTTEEEECCT
T ss_pred             cCCCCCceEEEEECCCCCCHHHHHHHHHhc-----cCCeEEEecC
Confidence            345689999999999999999999999987     5788888865

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.92  E-value=1e-05  Score=84.00  Aligned_cols=29  Identities=28%  Similarity=0.439  Sum_probs=26.3

Q ss_pred             EEEeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         57 GRFPSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +-+++|+++.|.||+|+|||||+..++..
T Consensus       102 GGl~~G~i~~i~G~~GsGKT~la~~la~~  130 (324)
T 2z43_A          102 GGIETRTMTEFFGEFGSGKTQLCHQLSVN  130 (324)
T ss_dssp             TSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence            56899999999999999999999888763

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.84  E-value=3.4e-06  Score=88.21  Aligned_cols=27  Identities=22%  Similarity=0.338  Sum_probs=24.2

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      ++++.+.|.||+|+|||||++.+++..
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999998854

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.80  E-value=3.5e-05  Score=81.21  Aligned_cols=34  Identities=26%  Similarity=0.489  Sum_probs=27.7

Q ss_pred             cceeee--EEEeCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765         51 VLKNLC--GRFPSNQLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        51 iL~~vs--~~i~~Ge~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      -|+.+-  +-+++|+++.|.||+|+|||||...++.
T Consensus        50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~   85 (356)
T 1u94_A           50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA   85 (356)
T ss_dssp             HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            355543  3589999999999999999999987765

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.80  E-value=8.4e-06  Score=79.01  Aligned_cols=36  Identities=25%  Similarity=0.356  Sum_probs=29.2

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEE
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQIL   95 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~   95 (606)
                      ++|++++|+||||||||||++.|++..++...+.+.
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~   41 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSIS   41 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCC
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEe
Confidence            589999999999999999999999986542333333

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.77  E-value=4.7e-05  Score=82.04  Aligned_cols=153  Identities=14%  Similarity=0.102  Sum_probs=83.2

Q ss_pred             eeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHc
Q psy13765         53 KNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLL  132 (606)
Q Consensus        53 ~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~  132 (606)
                      ++++++  +|++++++|+||+||||++..|++.... ..|+|.+.+.+.........               .....+..
T Consensus        91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~-~g~~Vllvd~D~~r~aa~~q---------------L~~~~~~~  152 (425)
T 2ffh_A           91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPAAREQ---------------LRLLGEKV  152 (425)
T ss_dssp             CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEEECCSSCHHHHHH---------------HHHHHHHH
T ss_pred             ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEeeccccCchhHHH---------------HHHhcccC
Confidence            677887  8999999999999999999999998654 36788877654321110000               00111222


Q ss_pred             CCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCC--chhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHH
Q psy13765        133 GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNP--NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSC  210 (606)
Q Consensus       133 gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s--~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~  210 (606)
                      |+.-.....  +..-.+--+-.+..+-..+-|+++.|-|...-.  ........+++++..++-++++| +++|.|..  
T Consensus       153 gv~v~~~~~--~~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvD-a~tgq~av--  227 (425)
T 2ffh_A          153 GVPVLEVMD--GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD-AMTGQEAL--  227 (425)
T ss_dssp             TCCEEECCT--TCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE-GGGTTHHH--
T ss_pred             CccEEecCC--CCCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEe-ccchHHHH--
Confidence            332211100  001111111122222235667888888764321  12444556677776677778888 45665443  


Q ss_pred             HHHHHHHHHHHh-CCCEEEEEec
Q psy13765        211 SQCIKLLKMISQ-QGRTIICTIH  232 (606)
Q Consensus       211 ~~i~~~l~~l~~-~g~tii~~~H  232 (606)
                          +.++...+ -+.+-++.++
T Consensus       228 ----~~a~~f~~~l~i~GVIlTK  246 (425)
T 2ffh_A          228 ----SVARAFDEKVGVTGLVLTK  246 (425)
T ss_dssp             ----HHHHHHHHHTCCCEEEEES
T ss_pred             ----HHHHHHHhcCCceEEEEeC
Confidence                23334433 3556556565

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.76  E-value=3.2e-05  Score=79.32  Aligned_cols=38  Identities=21%  Similarity=0.377  Sum_probs=30.5

Q ss_pred             EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECC
Q psy13765         58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG   98 (606)
Q Consensus        58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G   98 (606)
                      .++++..+.|.||+|+|||||.++|++...   .+-+.+++
T Consensus        45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~---~~~i~v~~   82 (301)
T 3cf0_A           45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKG   82 (301)
T ss_dssp             CCCCCSEEEEECSSSSSHHHHHHHHHHHTT---CEEEEECH
T ss_pred             CCCCCceEEEECCCCcCHHHHHHHHHHHhC---CCEEEEEh
Confidence            467899999999999999999999998642   34555554

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.76  E-value=1.5e-05  Score=76.84  Aligned_cols=29  Identities=28%  Similarity=0.326  Sum_probs=26.9

Q ss_pred             EEeCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      ++++|++++|+|+|||||||+.+.|++..
T Consensus        17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            57889999999999999999999999864

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.73  E-value=0.0001  Score=73.37  Aligned_cols=34  Identities=29%  Similarity=0.689  Sum_probs=24.3

Q ss_pred             cceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        51 iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++++++..++|  +.|.||+|+|||||+++|++..
T Consensus        36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~   69 (257)
T 1lv7_A           36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA   69 (257)
T ss_dssp             GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence            345555555655  8899999999999999999864

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.72  E-value=9e-06  Score=75.99  Aligned_cols=37  Identities=22%  Similarity=0.345  Sum_probs=31.2

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR  101 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~  101 (606)
                      .+|++++|+|||||||||+++.|++..     |.+.+++...
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-----g~~~i~~d~~   42 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL-----HAAFLDGDFL   42 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH-----TCEEEEGGGG
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh-----CcEEEeCccc
Confidence            469999999999999999999998852     6778877543

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.70  E-value=3.6e-06  Score=93.77  Aligned_cols=48  Identities=21%  Similarity=0.343  Sum_probs=39.9

Q ss_pred             cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECC
Q psy13765         49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG   98 (606)
Q Consensus        49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G   98 (606)
                      ..+++++++++ +|+.++|+||||+|||||+++|++...+ ..|+|.++|
T Consensus        96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~i~~~~  143 (543)
T 3m6a_A           96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGR-KFVRISLGG  143 (543)
T ss_dssp             HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTC-EEEEECCCC
T ss_pred             HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCC-CeEEEEecc
Confidence            34678888888 8999999999999999999999998654 367776665

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.66  E-value=1.6e-05  Score=76.83  Aligned_cols=30  Identities=23%  Similarity=0.506  Sum_probs=26.1

Q ss_pred             EEeCCeEEEEECCCCCCHHHHHHHHhCCCC
Q psy13765         58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYRS   87 (606)
Q Consensus        58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~   87 (606)
                      ...+|++++|+||||||||||++.|.+..+
T Consensus        15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           15 YFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             -CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            345899999999999999999999998654

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.64  E-value=8.7e-06  Score=78.40  Aligned_cols=41  Identities=20%  Similarity=0.161  Sum_probs=33.7

Q ss_pred             EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCc
Q psy13765         58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH   99 (606)
Q Consensus        58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~   99 (606)
                      ..++|++++|+||||||||||++.|++...+ ..|.|.+.+.
T Consensus        18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~-~~~~v~~~~~   58 (201)
T 1rz3_A           18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLRE-QGISVCVFHM   58 (201)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHHH-TTCCEEEEEG
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHHHhh-cCCeEEEecc
Confidence            3678999999999999999999999997643 3577776554

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=97.61  E-value=0.0001  Score=79.92  Aligned_cols=160  Identities=13%  Similarity=0.145  Sum_probs=92.2

Q ss_pred             ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHH
Q psy13765         50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVM  129 (606)
Q Consensus        50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l  129 (606)
                      .-|+.+.+-+++|+++.|.|++|+|||||.--++.....  .|               ..+.|+.=+..  +.-.+..++
T Consensus       185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~--~g---------------~~vl~fSlEms--~~ql~~R~~  245 (444)
T 3bgw_A          185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD--ND---------------DVVNLHSLEMG--KKENIKRLI  245 (444)
T ss_dssp             HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHH--TT---------------CEEEEECSSSC--TTHHHHHHH
T ss_pred             HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHH--cC---------------CEEEEEECCCC--HHHHHHHHH
Confidence            346666666999999999999999999998776643111  11               11222221100  000011111


Q ss_pred             H-HcCCccccCCcccc--CChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhh--cCCc--EEEEeCCC
Q psy13765        130 S-LLGLDESQNTRSSQ--LSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELI--NNPR--VMFLDEPT  202 (606)
Q Consensus       130 ~-~~gl~~~~~~~~~~--lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~--~~P~--lllLDEPT  202 (606)
                      . ..|++...- +-+.  |+..+.+|+.-|...+.+.++.+.|+|.  ++-.+  -.+.++.+.  .+|+  ++++|--+
T Consensus       246 ~~~~~i~~~~l-~~g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~~--i~~~ir~l~~~~~~~~~lIVID~Lq  320 (444)
T 3bgw_A          246 VTAGSINAQKI-KAARRDFASEDWGKLSMAIGEISNSNINIFDKAG--QSVNY--IWSKTRQTKRKNPGKRVIVMIDYLQ  320 (444)
T ss_dssp             HHHSCCCHHHH-HHTGGGTCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHHH--HHHHHHHHHHHSCSSCEEEEEECST
T ss_pred             HHHcCCCHHHH-hcccCCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHH--HHHHHHHHHHHhCCCCeEEEEecHH
Confidence            1 112221100 1123  7888889998888888777887777764  33322  222333332  4789  99999654


Q ss_pred             CC---C---CH-HHHHHHHHHHHHHHhC-CCEEEEEecC
Q psy13765        203 TG---L---DS-QSCSQCIKLLKMISQQ-GRTIICTIHQ  233 (606)
Q Consensus       203 sg---L---D~-~~~~~i~~~l~~l~~~-g~tii~~~H~  233 (606)
                      .=   -   +. ....++.+.|+.++++ |.+||+++|-
T Consensus       321 ~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql  359 (444)
T 3bgw_A          321 LLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQL  359 (444)
T ss_dssp             TSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred             hccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence            21   1   11 1334667778888775 9999999983

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.60  E-value=8.5e-05  Score=73.14  Aligned_cols=52  Identities=23%  Similarity=0.383  Sum_probs=42.1

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCchHHHhhcceeeeec
Q psy13765        193 PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIH---------QPSATLFQMFDQVYLLS  249 (606)
Q Consensus       193 P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H---------~~~~~i~~~~D~v~~L~  249 (606)
                      |+++++||--. |+.    ++++.++.+++.|.+||++-|         .++..+..++|+|.-|+
T Consensus        90 ~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~  150 (223)
T 2b8t_A           90 TKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT  150 (223)
T ss_dssp             CCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred             CCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence            89999999854 654    355666777777999999999         66678889999999875

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.60  E-value=6.1e-06  Score=85.77  Aligned_cols=41  Identities=27%  Similarity=0.379  Sum_probs=35.8

Q ss_pred             cccccceeeeEEEeCCe------EEEEECCCCCCHHHHHHHHhCCCC
Q psy13765         47 EPKDVLKNLCGRFPSNQ------LIAIMGPSGAGKSSLLDVLSGYRS   87 (606)
Q Consensus        47 ~~~~iL~~vs~~i~~Ge------~~aIiGpsGaGKSTLL~~L~g~~~   87 (606)
                      +.++.|++++..+.+++      ++||+||||||||||+++|+++..
T Consensus        71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            45678888888888877      999999999999999999999754

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.56  E-value=4.4e-05  Score=70.26  Aligned_cols=31  Identities=35%  Similarity=0.536  Sum_probs=25.7

Q ss_pred             eeeeEEEeCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765         53 KNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        53 ~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ++.++++.+| +++|+|||||||||++++|.-
T Consensus        15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence            4456666666 999999999999999999863

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.50  E-value=3.5e-05  Score=72.17  Aligned_cols=22  Identities=36%  Similarity=0.690  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .++|+|++|+|||||++.|+|.
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999985

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.49  E-value=0.00015  Score=78.20  Aligned_cols=37  Identities=16%  Similarity=0.197  Sum_probs=29.6

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG   98 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G   98 (606)
                      ++.+++++||+|+||||++..|++.... ..++|.+-+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~-~G~kVllv~  132 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK-RGYKVGLVA  132 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEe
Confidence            5899999999999999999999987543 245665544

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.48  E-value=6.2e-05  Score=74.14  Aligned_cols=55  Identities=9%  Similarity=0.124  Sum_probs=33.4

Q ss_pred             hcCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcce
Q psy13765        190 INNPRVMFLDEPTT-GLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQ  244 (606)
Q Consensus       190 ~~~P~lllLDEPTs-gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~  244 (606)
                      +.+.+++++||.-. ++|.......++.+.+...+-++++++.--+...+.+++++
T Consensus       174 l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~  229 (235)
T 3llm_A          174 IRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN  229 (235)
T ss_dssp             CTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred             hcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence            45689999999976 67776665455444443333346666655444445555554

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.45  E-value=4.1e-05  Score=71.15  Aligned_cols=26  Identities=35%  Similarity=0.484  Sum_probs=23.8

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .|++++|+|||||||||++++|++..
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l   28 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQL   28 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            47889999999999999999999864

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.45  E-value=2.1e-05  Score=87.63  Aligned_cols=42  Identities=29%  Similarity=0.303  Sum_probs=35.1

Q ss_pred             EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcc-EEE-ECCcc
Q psy13765         58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTG-QIL-TNGHS  100 (606)
Q Consensus        58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G-~I~-~~G~~  100 (606)
                      .+++|++++|+|+||||||||+++|+|.+.+. +| ++. ++|..
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~-~G~~i~~lDgD~  408 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM-GGRCVTLLDGDI  408 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT-CSSCEEEESSHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhccc-CCceEEEECCcH
Confidence            57899999999999999999999999987653 54 674 78753

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.42  E-value=8.6e-05  Score=76.58  Aligned_cols=44  Identities=9%  Similarity=0.168  Sum_probs=33.8

Q ss_pred             CCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765        192 NPRVMFLDEPTT-GLDSQSCSQCIKLLKMISQQGRTIICTIHQPS  235 (606)
Q Consensus       192 ~P~lllLDEPTs-gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~  235 (606)
                      +|++|++||+-. .-|..+...+...+..+.+.|..+|++++.+.
T Consensus        98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~  142 (324)
T 1l8q_A           98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP  142 (324)
T ss_dssp             TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred             CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence            389999999865 23447788888898888777877888877654

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.39  E-value=0.00014  Score=69.44  Aligned_cols=24  Identities=25%  Similarity=0.372  Sum_probs=21.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      ..+.|.||+|+|||||+++|+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            688999999999999999998753

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.37  E-value=0.00033  Score=71.29  Aligned_cols=25  Identities=28%  Similarity=0.486  Sum_probs=22.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCCCC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGYRS   87 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~~~   87 (606)
                      ..+.|.||+|+||||+.++|++...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~   72 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLF   72 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHc
Confidence            6899999999999999999998754

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.36  E-value=2.1e-05  Score=83.28  Aligned_cols=52  Identities=25%  Similarity=0.306  Sum_probs=43.9

Q ss_pred             EEEEEeeEEEEecCCcccccccccce--------------eeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLK--------------NLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~--------------~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .+.|+||++.|+.       ++..|+              |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus       133 ri~Fe~ltp~yP~-------er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          133 KILFENLTPLHAN-------SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             SCCTTTSCEESCC-------SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             CceeccccccCCC-------CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            4667888877642       355777              899999999999999999999999999998753

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.34  E-value=0.00038  Score=70.00  Aligned_cols=28  Identities=25%  Similarity=0.427  Sum_probs=24.3

Q ss_pred             EeCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         59 FPSNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      +.++.-+.|.||+|+|||||.++++...
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            4567779999999999999999998753

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.34  E-value=0.00015  Score=70.42  Aligned_cols=43  Identities=12%  Similarity=0.152  Sum_probs=29.8

Q ss_pred             CcEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCE-EEEEecCCc
Q psy13765        193 PRVMFLDEPTTGL-DSQSCSQCIKLLKMISQQGRT-IICTIHQPS  235 (606)
Q Consensus       193 P~lllLDEPTsgL-D~~~~~~i~~~l~~l~~~g~t-ii~~~H~~~  235 (606)
                      |+++++||.-.-- +......+.+.+....+.+.. +|++++...
T Consensus       105 ~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~  149 (242)
T 3bos_A          105 FDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP  149 (242)
T ss_dssp             SSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred             CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence            8999999965422 233367788888887776655 777777543

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.33  E-value=0.00063  Score=70.16  Aligned_cols=34  Identities=21%  Similarity=0.353  Sum_probs=27.9

Q ss_pred             cceeee-EEEeCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765         51 VLKNLC-GRFPSNQLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        51 iL~~vs-~~i~~Ge~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      .|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus        86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            344433 5689999999999999999999987764

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.29  E-value=0.0011  Score=65.03  Aligned_cols=42  Identities=19%  Similarity=0.304  Sum_probs=29.0

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEecC
Q psy13765        192 NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ--QGRTIICTIHQ  233 (606)
Q Consensus       192 ~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~--~g~tii~~~H~  233 (606)
                      +|+++++..+.+.++......+..+++.+..  ...++|+.+|-
T Consensus       112 ~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~  155 (239)
T 3lxx_A          112 GPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK  155 (239)
T ss_dssp             CCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred             CCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence            4899999999888888666555555544432  13588888884

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.28  E-value=1.9e-05  Score=82.68  Aligned_cols=52  Identities=15%  Similarity=0.190  Sum_probs=42.0

Q ss_pred             cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCc
Q psy13765         47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH   99 (606)
Q Consensus        47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~   99 (606)
                      +.+.+++++++.+++|.+++|+|++|+|||||++.|++...+ ..|+|.+-+.
T Consensus        41 ~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~-~~~~v~v~~~   92 (341)
T 2p67_A           41 LSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIR-EGLKVAVIAV   92 (341)
T ss_dssp             HHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHH-TTCCEEEEEE
T ss_pred             HHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEEee
Confidence            345688999999999999999999999999999999987543 2455655443

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.23  E-value=8.6e-05  Score=78.32  Aligned_cols=57  Identities=19%  Similarity=0.289  Sum_probs=44.1

Q ss_pred             ccc-cCChHHHHHHHHHHHHh---------cCCcccccCCCCCCCCchhhhHH-HHHHhhhcCCcEEEEeC
Q psy13765        141 RSS-QLSGGQKKRLSIALELI---------NNPRVMFLDEPTTSNPNDQKKRL-SIALELINNPRVMFLDE  200 (606)
Q Consensus       141 ~~~-~lSgGqrqRv~ia~~L~---------~~~~~~~~de~~~~~s~g~~krl-~IA~aL~~~P~lllLDE  200 (606)
                      .++ .+|||||||++||++|+         .+|+++++|||++.|+...++++ .+...+.   ..++...
T Consensus       261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~t  328 (359)
T 2o5v_A          261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGT  328 (359)
T ss_dssp             EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEES
T ss_pred             chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEE
Confidence            344 59999999999999999         89999999999999997655544 4444432   5666653

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.19  E-value=0.00048  Score=85.14  Aligned_cols=28  Identities=25%  Similarity=0.513  Sum_probs=25.8

Q ss_pred             EEeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         58 RFPSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -+++|+++.|.||+|+|||||+..++..
T Consensus       728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~  755 (1706)
T 3cmw_A          728 GLPMGRIVEIYGPESSGKTTLTLQVIAA  755 (1706)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCCCceEEEECCCCCCcHHHHHHHHHH
Confidence            4999999999999999999999888764

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.18  E-value=0.00021  Score=69.02  Aligned_cols=31  Identities=35%  Similarity=0.536  Sum_probs=25.5

Q ss_pred             eeeeEEEeCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765         53 KNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        53 ~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ++.++.+.+| +++|+|||||||||++++|.-
T Consensus        15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~   45 (203)
T 3qks_A           15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV   45 (203)
T ss_dssp             SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             cceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence            3456666665 999999999999999999853

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.15  E-value=0.0019  Score=67.68  Aligned_cols=27  Identities=22%  Similarity=0.427  Sum_probs=23.4

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .+..-+.|.||+|+|||||.++|+...
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            456789999999999999999998753

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.14  E-value=0.0002  Score=70.51  Aligned_cols=37  Identities=22%  Similarity=0.314  Sum_probs=26.5

Q ss_pred             cceeeeEEEe---CCeEEEEECCCCCCHHHHHHHHhCCCC
Q psy13765         51 VLKNLCGRFP---SNQLIAIMGPSGAGKSSLLDVLSGYRS   87 (606)
Q Consensus        51 iL~~vs~~i~---~Ge~~aIiGpsGaGKSTLL~~L~g~~~   87 (606)
                      -|.++|+.++   +|.+++|.||+||||||+++.|+..+.
T Consensus        12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            3666666666   899999999999999999999998754

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.10  E-value=0.00011  Score=77.26  Aligned_cols=40  Identities=20%  Similarity=0.367  Sum_probs=32.6

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCcc
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS  100 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~  100 (606)
                      +++.+++|+|++|||||||+|.|+|...+ ..|+|.+.+.+
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~-~~~~v~V~~~d  111 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE-RGHKLSVLAVD  111 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEECC
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhh-cCCeEEEEeec
Confidence            46889999999999999999999997544 36777776654

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=97.10  E-value=0.00059  Score=74.99  Aligned_cols=172  Identities=15%  Similarity=0.135  Sum_probs=90.9

Q ss_pred             ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHH
Q psy13765         50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVM  129 (606)
Q Consensus        50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l  129 (606)
                      .-|+.+.+-+++|+++.|.|++|+|||||..-++-..... .|               ..+.|+.=      .++.+++.
T Consensus       230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g---------------~~vl~~s~------E~s~~~l~  287 (503)
T 1q57_A          230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA-MG---------------KKVGLAML------EESVEETA  287 (503)
T ss_dssp             TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT-SC---------------CCEEEEES------SSCHHHHH
T ss_pred             hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHh-cC---------------CcEEEEec------cCCHHHHH
Confidence            3456555569999999999999999999987665421110 11               11222211      11222222


Q ss_pred             HH-----cCCcccc--CCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhh--cCCcEEEEeC
Q psy13765        130 SL-----LGLDESQ--NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELI--NNPRVMFLDE  200 (606)
Q Consensus       130 ~~-----~gl~~~~--~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~--~~P~lllLDE  200 (606)
                      ..     .|++...  .-+.+.++..+.+++.  .+++.+.++.+.|.|. ..  ...+.++.++.+.  .+|+++++|=
T Consensus       288 ~r~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~--~~~~~~~~l~i~~~~~-~~--~~~~i~~~i~~~~~~~~~~lvVID~  362 (503)
T 1q57_A          288 EDLIGLHNRVRLRQSDSLKREIIENGKFDQWF--DELFGNDTFHLYDSFA-EA--ETDRLLAKLAYMRSGLGCDVIILDH  362 (503)
T ss_dssp             HHHHHHHTTSCCTTCHHHHHHHHHTSHHHHHH--HHHHTTTCEEEECCC------CHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             HHHHHHHcCCChhhccccccCCCCHHHHHHHH--HHHhccCCEEEECCCC-CC--CHHHHHHHHHHHHHhcCCCEEEEcc
Confidence            21     1221110  0011223333444432  2334445566666542 12  2233333444443  4699999995


Q ss_pred             CCCCC-------CH-HHHHHHHHHHHHHHhC-CCEEEEEecCCc---------------------hHHHhhcceeeeec
Q psy13765        201 PTTGL-------DS-QSCSQCIKLLKMISQQ-GRTIICTIHQPS---------------------ATLFQMFDQVYLLS  249 (606)
Q Consensus       201 PTsgL-------D~-~~~~~i~~~l~~l~~~-g~tii~~~H~~~---------------------~~i~~~~D~v~~L~  249 (606)
                      -+. +       +. ....++++.|++++++ |.+||+++|-..                     ..+...+|-|+.|.
T Consensus       363 l~~-l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~  440 (503)
T 1q57_A          363 ISI-VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALE  440 (503)
T ss_dssp             TTC-CCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEE
T ss_pred             chh-cCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCChhhhccchHhhecCcEEEEEE
Confidence            432 2       11 2234577778888765 999999988542                     13456688888885

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.07  E-value=0.001  Score=70.27  Aligned_cols=27  Identities=26%  Similarity=0.551  Sum_probs=24.3

Q ss_pred             EEeCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765         58 RFPSNQLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      -+++|+++.|.||+|+|||||...++.
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la~   96 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIVA   96 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence            589999999999999999999877653

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.05  E-value=0.00021  Score=68.70  Aligned_cols=42  Identities=19%  Similarity=0.264  Sum_probs=29.3

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765        192 NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS  235 (606)
Q Consensus       192 ~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~  235 (606)
                      +|.++++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus       126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~  167 (250)
T 1njg_A          126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ  167 (250)
T ss_dssp             SSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred             CceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence            388999999765 7777766666655432 13567888888754

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.04  E-value=0.00025  Score=68.79  Aligned_cols=57  Identities=21%  Similarity=0.173  Sum_probs=39.7

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCC--CCCccEEEE--------CCccCC----hhhhcccEEEEccCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGYRS--NGVTGQILT--------NGHSRN----INAFRRVSCYIQQDD  117 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~~--~~~~G~I~~--------~G~~~~----~~~~~~~~~yv~Q~~  117 (606)
                      .+.+++|+|||||||||+.++|++.+.  ...+|++..        +|.+.+    ...+++.+++++|++
T Consensus         4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   74 (227)
T 1cke_A            4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST   74 (227)
T ss_dssp             CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence            356899999999999999999997531  113677765        555432    123456678887764

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.03  E-value=0.00028  Score=66.08  Aligned_cols=38  Identities=26%  Similarity=0.325  Sum_probs=29.7

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcc--EEEECCc
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTG--QILTNGH   99 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G--~I~~~G~   99 (606)
                      ++|++++|+|++||||||+.+.|++.+.+  .|  .+.++|.
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~--~g~~~i~~d~~   42 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC--HGIPCYTLDGD   42 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhh--CCCcEEEECCh
Confidence            47999999999999999999999986532  34  5556553

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.02  E-value=0.00056  Score=73.88  Aligned_cols=38  Identities=24%  Similarity=0.479  Sum_probs=30.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCCCC-----------CCCccEEEECCcc
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGYRS-----------NGVTGQILTNGHS  100 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~~~-----------~~~~G~I~~~G~~  100 (606)
                      -.++|+|+||+|||||+|.|+|...           ....|.+.++|+.
T Consensus       181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~  229 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK  229 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence            3799999999999999999999742           0236888888864

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.00  E-value=0.0061  Score=62.95  Aligned_cols=28  Identities=29%  Similarity=0.380  Sum_probs=24.2

Q ss_pred             EeCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         59 FPSNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      ..+..-+.|.||+|+|||||.++++...
T Consensus        42 ~~~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           42 RTPWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence            4566789999999999999999999754

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.99  E-value=0.00069  Score=69.98  Aligned_cols=27  Identities=33%  Similarity=0.480  Sum_probs=22.0

Q ss_pred             EEEeCCeEEEEECCCCCCHHHHH-HHHhC
Q psy13765         57 GRFPSNQLIAIMGPSGAGKSSLL-DVLSG   84 (606)
Q Consensus        57 ~~i~~Ge~~aIiGpsGaGKSTLL-~~L~g   84 (606)
                      +=+++| ++.|.||+|+|||||+ .+++.
T Consensus        24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~   51 (333)
T 3io5_A           24 GGMQSG-LLILAGPSKSFKSNFGLTMVSS   51 (333)
T ss_dssp             CCBCSE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred             CCCcCC-eEEEECCCCCCHHHHHHHHHHH
Confidence            458899 9999999999999995 44443

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.96  E-value=0.0024  Score=63.00  Aligned_cols=26  Identities=23%  Similarity=0.406  Sum_probs=22.4

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++..-+.|.||+|+|||||.+.++..
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHH
Confidence            45556889999999999999999874

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.96  E-value=0.00034  Score=66.10  Aligned_cols=32  Identities=25%  Similarity=0.354  Sum_probs=26.2

Q ss_pred             eeeEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         54 NLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        54 ~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++|+...+|..++|+|++||||||+.+.|+..
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            57888889999999999999999999999864

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.95  E-value=0.00068  Score=71.56  Aligned_cols=31  Identities=32%  Similarity=0.553  Sum_probs=27.4

Q ss_pred             ceeeeEEEeCCeEEEEECCCCCCHHHHHHHHh
Q psy13765         52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLS   83 (606)
Q Consensus        52 L~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~   83 (606)
                      +++..+++.+| +++|.|||||||||+|.+|.
T Consensus        16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred             ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence            46778888776 99999999999999999986

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.94  E-value=0.00034  Score=67.16  Aligned_cols=29  Identities=24%  Similarity=0.423  Sum_probs=25.4

Q ss_pred             EEeCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      ...+|.+++|+||||||||||.+.|+...
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            35689999999999999999999998754

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.93  E-value=0.00055  Score=71.32  Aligned_cols=27  Identities=15%  Similarity=0.233  Sum_probs=23.6

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++..+.|.||+|+|||||++.++...
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            467789999999999999999998653

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.90  E-value=0.0018  Score=81.15  Aligned_cols=34  Identities=26%  Similarity=0.489  Sum_probs=27.7

Q ss_pred             cceeee--EEEeCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765         51 VLKNLC--GRFPSNQLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        51 iL~~vs--~~i~~Ge~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      -|+.+-  +=+++|+++.|.||+|+|||||...++.
T Consensus       370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~  405 (2050)
T 3cmu_A          370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA  405 (2050)
T ss_dssp             HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            355543  2599999999999999999999877764

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.89  E-value=0.00011  Score=77.39  Aligned_cols=56  Identities=27%  Similarity=0.267  Sum_probs=34.6

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECC
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG   98 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G   98 (606)
                      .+.++|++..+        +++.+++++++.|      +|+|+||+|||||++.|.|.... ..|.+..++
T Consensus        17 ~v~~~~l~~~~--------~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~-~~~~~~~~~   72 (361)
T 2qag_A           17 YVGFANLPNQV--------HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY-PERVIPGAA   72 (361)
T ss_dssp             ----CCHHHHH--------HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----------
T ss_pred             eEEeccchHHh--------CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCC-CCCcccCCC
Confidence            46777776543        4567899999877      99999999999999999886433 234443333

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=96.88  E-value=0.00048  Score=64.04  Aligned_cols=27  Identities=41%  Similarity=0.589  Sum_probs=23.4

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      ++|..++|+|++|+|||||++.|+|..
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            468899999999999999999999864

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.88  E-value=0.00017  Score=69.64  Aligned_cols=40  Identities=25%  Similarity=0.164  Sum_probs=33.0

Q ss_pred             EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcc--EEEECC
Q psy13765         58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTG--QILTNG   98 (606)
Q Consensus        58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G--~I~~~G   98 (606)
                      .+++|.++.|+|++||||||+.+.|++.+.+ ..|  .+.++|
T Consensus        21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~-~~g~~~~~~~~   62 (211)
T 1m7g_A           21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVR-DRRVHAYRLDG   62 (211)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHHHH-HHCCCEEEECH
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHHhcc-ccCCcEEEECC
Confidence            4678999999999999999999999987543 256  777765

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.81  E-value=0.00019  Score=74.23  Aligned_cols=42  Identities=12%  Similarity=0.145  Sum_probs=30.9

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q psy13765        193 PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSA  236 (606)
Q Consensus       193 P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~  236 (606)
                      ++++++|| ...|++.....+.+.+.+... ...+|++++++..
T Consensus       134 ~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~~  175 (353)
T 1sxj_D          134 YKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVTR  175 (353)
T ss_dssp             CEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGGG
T ss_pred             ceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchhh
Confidence            78999999 778998888888887766533 3456667776653

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.78  E-value=0.0023  Score=79.19  Aligned_cols=34  Identities=26%  Similarity=0.489  Sum_probs=27.7

Q ss_pred             cceeee--EEEeCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765         51 VLKNLC--GRFPSNQLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        51 iL~~vs--~~i~~Ge~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      -|+.+-  +=+++|+++.|.||+|+|||||.-.++.
T Consensus       370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~  405 (1706)
T 3cmw_A          370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA  405 (1706)
T ss_dssp             HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            456554  3589999999999999999999876654

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=96.77  E-value=0.0015  Score=62.54  Aligned_cols=52  Identities=23%  Similarity=0.452  Sum_probs=40.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCchHHHhhcceeeeec
Q psy13765        193 PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIH---------QPSATLFQMFDQVYLLS  249 (606)
Q Consensus       193 P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H---------~~~~~i~~~~D~v~~L~  249 (606)
                      .+++++||--- +|+.    .++.++++++.|..||++-+         .++..+..++|.|.-|+
T Consensus        82 ~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~  142 (191)
T 1xx6_A           82 TEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ  142 (191)
T ss_dssp             CSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred             CCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence            78999999433 6543    35677787778999999999         55677889999998775

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=96.70  E-value=0.0056  Score=58.83  Aligned_cols=65  Identities=20%  Similarity=0.145  Sum_probs=48.6

Q ss_pred             HHHhhh--cCCcEEEEeCCCCC--CCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765        185 IALELI--NNPRVMFLDEPTTG--LDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG  250 (606)
Q Consensus       185 IA~aL~--~~P~lllLDEPTsg--LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~  250 (606)
                      -|+..+  .+.++++|||.+..  ++--...+++++|.+ +-++..||+|.+.+..++.+.+|-|.-|..
T Consensus       111 ~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~  179 (196)
T 1g5t_A          111 HGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDLADTVSELRP  179 (196)
T ss_dssp             HHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred             HHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCCEEEEECCCCcHHHHHhCcceeeecc
Confidence            444444  44899999999763  344445567777753 224789999999999999999999999975

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.69  E-value=0.00058  Score=65.15  Aligned_cols=21  Identities=29%  Similarity=0.526  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      +++|+|+|||||||+.+.|++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            589999999999999999998

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.68  E-value=0.00024  Score=67.75  Aligned_cols=36  Identities=28%  Similarity=0.373  Sum_probs=31.8

Q ss_pred             cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +.+++++|+..++++ ++|+|++|+|||||++.+.+-
T Consensus        13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~   48 (198)
T 1f6b_A           13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD   48 (198)
T ss_dssp             CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred             HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence            468999999988886 689999999999999999874

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=96.67  E-value=0.00063  Score=64.21  Aligned_cols=35  Identities=31%  Similarity=0.387  Sum_probs=20.8

Q ss_pred             ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .+++++++..++. .++++|++|+|||||++.+.+.
T Consensus        12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred             HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999998888 5689999999999999999874

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.65  E-value=0.001  Score=63.13  Aligned_cols=52  Identities=21%  Similarity=0.353  Sum_probs=37.9

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc---------hHHHhhcceeeeec
Q psy13765        193 PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS---------ATLFQMFDQVYLLS  249 (606)
Q Consensus       193 P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~---------~~i~~~~D~v~~L~  249 (606)
                      ++++++||--. +|+    ++++.|+.++++|..|+++.++.+         ..+...+|.+.-|+
T Consensus        77 ~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~  137 (184)
T 2orw_A           77 TRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK  137 (184)
T ss_dssp             EEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred             CCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence            78999999643 443    366677777778999999998443         45666788886664

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.61  E-value=0.0038  Score=56.43  Aligned_cols=42  Identities=12%  Similarity=0.097  Sum_probs=29.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q psy13765        193 PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSA  236 (606)
Q Consensus       193 P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~  236 (606)
                      ..+|++||.- .|++..+..+.+.++.. ..+..+|++++.+..
T Consensus        77 ~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~  118 (145)
T 3n70_A           77 GGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLV  118 (145)
T ss_dssp             TSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHH
T ss_pred             CcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHH
Confidence            6789999984 58888888888877322 224567777776543

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.61  E-value=0.00023  Score=74.71  Aligned_cols=38  Identities=32%  Similarity=0.489  Sum_probs=34.2

Q ss_pred             cccceeeeEEEeCCeE--EEEECCCCCCHHHHHHHHhCCC
Q psy13765         49 KDVLKNLCGRFPSNQL--IAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        49 ~~iL~~vs~~i~~Ge~--~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      ..+++++++.+++|+.  ++|+||+||||||+.++|++.+
T Consensus         9 ~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l   48 (359)
T 2ga8_A            9 DDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII   48 (359)
T ss_dssp             HHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence            3578889999999998  9999999999999999999853

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.59  E-value=0.002  Score=66.25  Aligned_cols=24  Identities=29%  Similarity=0.404  Sum_probs=22.0

Q ss_pred             CeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         62 NQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        62 Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++-+.|.||+|+|||+|+++|+..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            688999999999999999999864

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.58  E-value=0.0011  Score=60.74  Aligned_cols=23  Identities=35%  Similarity=0.664  Sum_probs=21.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++|+|++|+|||||++.++|..
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999864

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.57  E-value=0.00022  Score=69.80  Aligned_cols=58  Identities=19%  Similarity=0.203  Sum_probs=37.6

Q ss_pred             CCcEEEEeCCCC----CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchH---------HHhhcceeeeec
Q psy13765        192 NPRVMFLDEPTT----GLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSAT---------LFQMFDQVYLLS  249 (606)
Q Consensus       192 ~P~lllLDEPTs----gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~---------i~~~~D~v~~L~  249 (606)
                      +|+++++|--+.    .-|.....+++..|++++++ |.+++++.|.....         +...+|-|+.|.
T Consensus       135 ~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~  206 (251)
T 2zts_A          135 NAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD  206 (251)
T ss_dssp             TCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred             CCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence            488888885432    11445566777788887765 99999999864321         234677777774

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.53  E-value=0.0012  Score=61.70  Aligned_cols=25  Identities=32%  Similarity=0.553  Sum_probs=22.4

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      .+|.+++|+|++||||||+.+.|+.
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999999984

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.53  E-value=0.0014  Score=61.70  Aligned_cols=29  Identities=17%  Similarity=0.353  Sum_probs=25.8

Q ss_pred             EeCCeEEEEECCCCCCHHHHHHHHhCCCC
Q psy13765         59 FPSNQLIAIMGPSGAGKSSLLDVLSGYRS   87 (606)
Q Consensus        59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~   87 (606)
                      .++|.++.|+|++||||||+.+.|++...
T Consensus        10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~   38 (186)
T 2yvu_A           10 IEKGIVVWLTGLPGSGKTTIATRLADLLQ   38 (186)
T ss_dssp             CSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            45799999999999999999999998654

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.50  E-value=0.00029  Score=73.24  Aligned_cols=41  Identities=22%  Similarity=0.356  Sum_probs=36.1

Q ss_pred             cccccceeeeEEEeCCeE--EEEECCCCCCHHHHHHHHhCCCC
Q psy13765         47 EPKDVLKNLCGRFPSNQL--IAIMGPSGAGKSSLLDVLSGYRS   87 (606)
Q Consensus        47 ~~~~iL~~vs~~i~~Ge~--~aIiGpsGaGKSTLL~~L~g~~~   87 (606)
                      +...+++.++..+++|++  +.+.||+|+||||+++++++...
T Consensus        29 g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence            345688889999999998  99999999999999999998653

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=96.49  E-value=0.0085  Score=58.99  Aligned_cols=52  Identities=19%  Similarity=0.258  Sum_probs=43.0

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC---------CchHHHhhcceeeeec
Q psy13765        192 NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQ---------PSATLFQMFDQVYLLS  249 (606)
Q Consensus       192 ~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~---------~~~~i~~~~D~v~~L~  249 (606)
                      +.+++++||----.|      +.++++.+++.|+.||++-++         +...+..++|.|.-|+
T Consensus        90 ~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk  150 (234)
T 2orv_A           90 GVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT  150 (234)
T ss_dssp             TCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred             cCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence            389999999866543      666666667789999999999         8888999999999875

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.45  E-value=0.001  Score=63.50  Aligned_cols=24  Identities=38%  Similarity=0.522  Sum_probs=21.9

Q ss_pred             CeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         62 NQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        62 Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ..+++|+|+|||||||+.+.|++.
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999875

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=96.45  E-value=0.0012  Score=70.22  Aligned_cols=30  Identities=37%  Similarity=0.630  Sum_probs=26.3

Q ss_pred             eEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         56 CGRFPSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        56 s~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -+.+..|..++|+|+||+|||||+|.|+|.
T Consensus        16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             HhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            346678899999999999999999999996

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.44  E-value=0.00069  Score=67.50  Aligned_cols=45  Identities=18%  Similarity=0.229  Sum_probs=34.9

Q ss_pred             cceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCc
Q psy13765         51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH   99 (606)
Q Consensus        51 iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~   99 (606)
                      ++++.+ ..+++.++.|+|+|||||||+.+.|+....   .+.+.++|.
T Consensus        22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D   66 (253)
T 2p5t_B           22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGD   66 (253)
T ss_dssp             HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGG
T ss_pred             HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecH
Confidence            455544 577889999999999999999999998643   245667763

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.43  E-value=0.0042  Score=56.09  Aligned_cols=41  Identities=5%  Similarity=0.063  Sum_probs=30.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy13765        193 PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQP  234 (606)
Q Consensus       193 P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~  234 (606)
                      ..+|++||.- .|+...+..+.+.+.+-...+..+|++++.+
T Consensus        76 ~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~  116 (143)
T 3co5_A           76 GGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA  116 (143)
T ss_dssp             TSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred             CCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence            6799999975 5788888888888776543456677777754

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.39  E-value=0.0018  Score=60.12  Aligned_cols=25  Identities=32%  Similarity=0.489  Sum_probs=22.7

Q ss_pred             CeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         62 NQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        62 Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      |.++.|.|++||||||+.+.|+...
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            5789999999999999999998764

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.38  E-value=0.0017  Score=59.70  Aligned_cols=22  Identities=36%  Similarity=0.363  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +++|+||+||||||+.+.|+..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999864

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.31  E-value=0.00043  Score=71.07  Aligned_cols=46  Identities=15%  Similarity=0.156  Sum_probs=36.9

Q ss_pred             ee-eeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCcc
Q psy13765         53 KN-LCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS  100 (606)
Q Consensus        53 ~~-vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~  100 (606)
                      ++ ++++.+ |++++++|++|+||||++..|++.... ..|+|.+.+.+
T Consensus        89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~-~g~~v~l~~~D  135 (297)
T 1j8m_F           89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKK-KGFKVGLVGAD  135 (297)
T ss_dssp             CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHH-TTCCEEEEECC
T ss_pred             ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEecC
Confidence            45 777766 999999999999999999999987654 35677776544

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=96.30  E-value=0.0093  Score=61.70  Aligned_cols=28  Identities=21%  Similarity=0.465  Sum_probs=25.5

Q ss_pred             EEEeCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765         57 GRFPSNQLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      +-+.+|..+.|.||+|+|||||...++.
T Consensus       118 GGi~~gsviLI~GpPGsGKTtLAlqlA~  145 (331)
T 2vhj_A          118 GHRYASGMVIVTGKGNSGKTPLVHALGE  145 (331)
T ss_dssp             TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            5688999999999999999999998874

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.30  E-value=0.0019  Score=60.36  Aligned_cols=22  Identities=36%  Similarity=0.611  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .++|+|++|+|||||++.++|.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999986

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.30  E-value=0.017  Score=62.08  Aligned_cols=27  Identities=22%  Similarity=0.506  Sum_probs=22.9

Q ss_pred             EeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         59 FPSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +++-.=+.+.||+|+|||+|.+++|+.
T Consensus       203 ~~~prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          203 IDPPRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            445555889999999999999999975

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=96.30  E-value=0.007  Score=58.91  Aligned_cols=52  Identities=17%  Similarity=0.316  Sum_probs=42.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCchHHHhhcceeeeec
Q psy13765        193 PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIH---------QPSATLFQMFDQVYLLS  249 (606)
Q Consensus       193 P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H---------~~~~~i~~~~D~v~~L~  249 (606)
                      .+++++||--- +|..    .++.++++++.|+.||++-+         .+...+..++|.|.-|+
T Consensus       102 ~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~  162 (214)
T 2j9r_A          102 MDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ  162 (214)
T ss_dssp             CCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred             CCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence            78999999755 6543    33777787778999999999         77888889999998885

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.26  E-value=0.013  Score=61.41  Aligned_cols=26  Identities=31%  Similarity=0.461  Sum_probs=22.4

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .+..-+.|.||+|+|||||.++++..
T Consensus        82 ~~~~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           82 KPTSGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHH
Confidence            45556889999999999999999875

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.24  E-value=0.0019  Score=63.44  Aligned_cols=28  Identities=29%  Similarity=0.394  Sum_probs=24.1

Q ss_pred             EEeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         58 RFPSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .-.+|.+++|+|++||||||+.+.|++.
T Consensus        12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~   39 (236)
T 1q3t_A           12 DKMKTIQIAIDGPASSGKSTVAKIIAKD   39 (236)
T ss_dssp             --CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3568899999999999999999999873

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.23  E-value=0.0034  Score=63.96  Aligned_cols=27  Identities=22%  Similarity=0.265  Sum_probs=22.2

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      ++...+.|.||+|+|||+|.++|+...
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            344567888999999999999998753

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.23  E-value=0.0019  Score=60.97  Aligned_cols=38  Identities=32%  Similarity=0.314  Sum_probs=28.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCC--CCccEEEECCcc
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGYRSN--GVTGQILTNGHS  100 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~~~~--~~~G~I~~~G~~  100 (606)
                      .+++|+|+||||||||++.|.+....  ..-|.|..++++
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~   46 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD   46 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence            58999999999999999999875321  124777776543

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.21  E-value=0.00082  Score=70.69  Aligned_cols=43  Identities=16%  Similarity=0.139  Sum_probs=32.8

Q ss_pred             hcCCcccccCC---CCC----CCCchhhhHHHHHHhh---hc--CCcEEEEeCCC
Q psy13765        160 INNPRVMFLDE---PTT----SNPNDQKKRLSIALEL---IN--NPRVMFLDEPT  202 (606)
Q Consensus       160 ~~~~~~~~~de---~~~----~~s~g~~krl~IA~aL---~~--~P~lllLDEPT  202 (606)
                      ..+|+++++||   |+.    .+|+||++|..++++|   ..  +++++++||||
T Consensus       275 ~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~  329 (365)
T 1lw7_A          275 EYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS  329 (365)
T ss_dssp             HSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             hcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence            35899999998   763    4789999999999999   77  89999999997

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.21  E-value=0.0024  Score=59.63  Aligned_cols=25  Identities=16%  Similarity=0.389  Sum_probs=21.9

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +|.++.|.|++||||||+.+.|+..
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~~   26 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMDN   26 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3678999999999999999999864

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.20  E-value=0.0086  Score=56.52  Aligned_cols=42  Identities=19%  Similarity=0.302  Sum_probs=27.9

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765        192 NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS  235 (606)
Q Consensus       192 ~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~  235 (606)
                      ++.++++||. ..++......+.+.+.+. ..+..+|++++.+.
T Consensus       102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~~  143 (226)
T 2chg_A          102 PFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYVS  143 (226)
T ss_dssp             SCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCGG
T ss_pred             CceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCChh
Confidence            3899999995 446776666666666543 23556777777653

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.17  E-value=0.025  Score=59.66  Aligned_cols=25  Identities=24%  Similarity=0.509  Sum_probs=22.6

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++.-+.|.||+|+|||+|.++|+..
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~~  171 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAAE  171 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHh
Confidence            5678999999999999999999875

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.17  E-value=0.004  Score=68.29  Aligned_cols=27  Identities=22%  Similarity=0.427  Sum_probs=23.3

Q ss_pred             EeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         59 FPSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +++..-+.|.||+|+|||++.++|+..
T Consensus       235 ~~~~~~vLL~GppGtGKT~lAraia~~  261 (489)
T 3hu3_A          235 VKPPRGILLYGPPGTGKTLIARAVANE  261 (489)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence            455667999999999999999999875

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.15  E-value=0.0024  Score=59.86  Aligned_cols=26  Identities=27%  Similarity=0.419  Sum_probs=23.1

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +++.++.|.|++||||||+.+.|+..
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~   28 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATG   28 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            46789999999999999999999753

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.13  E-value=0.0096  Score=74.70  Aligned_cols=50  Identities=18%  Similarity=0.292  Sum_probs=35.7

Q ss_pred             cceeeeE--EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCcc
Q psy13765         51 VLKNLCG--RFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS  100 (606)
Q Consensus        51 iL~~vs~--~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~  100 (606)
                      -|+.+.+  -+++|+++.|-|++|+|||||+..++......-..-+++.+..
T Consensus       719 eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ee  770 (2050)
T 3cmu_A          719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH  770 (2050)
T ss_dssp             HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred             HHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCC
Confidence            3566654  6999999999999999999999888764322111245566543

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.12  E-value=0.0027  Score=62.82  Aligned_cols=24  Identities=38%  Similarity=0.576  Sum_probs=21.4

Q ss_pred             CeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         62 NQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        62 Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .-+++|.||+||||||+.+.|+..
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~   32 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARA   32 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            448999999999999999999853

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.08  E-value=0.023  Score=61.36  Aligned_cols=27  Identities=30%  Similarity=0.433  Sum_probs=23.6

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .+..-+.|.||+|+|||||.++++...
T Consensus       165 ~~~~~vLL~GppGtGKT~lA~aia~~~  191 (444)
T 2zan_A          165 TPWRGILLFGPPGTGKSYLAKAVATEA  191 (444)
T ss_dssp             CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            456778999999999999999999764

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.03  E-value=0.015  Score=58.85  Aligned_cols=27  Identities=19%  Similarity=0.381  Sum_probs=22.9

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      +++.-+.|.||+|+|||||.+.++...
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            455679999999999999999988753

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.02  E-value=0.028  Score=59.86  Aligned_cols=26  Identities=23%  Similarity=0.443  Sum_probs=21.8

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++-.=+.+.||+|+|||+|.+++|+.
T Consensus       180 ~~prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          180 AQPKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCCCceEEeCCCCCCHHHHHHHHHHh
Confidence            33344789999999999999999985

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=95.99  E-value=0.0034  Score=57.30  Aligned_cols=19  Identities=42%  Similarity=0.695  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHH
Q psy13765         64 LIAIMGPSGAGKSSLLDVL   82 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L   82 (606)
                      +++|.||+||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999999999

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=95.98  E-value=0.0036  Score=58.44  Aligned_cols=25  Identities=32%  Similarity=0.372  Sum_probs=21.7

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .+..+.|+||+||||||+.+.|+..
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~   28 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKL   28 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999854

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=95.97  E-value=0.0065  Score=59.70  Aligned_cols=41  Identities=12%  Similarity=0.235  Sum_probs=25.3

Q ss_pred             CCcEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy13765        192 NPRVMFLDEPTTG-LDSQSCSQCIKLLKMISQQGRTIICTIH  232 (606)
Q Consensus       192 ~P~lllLDEPTsg-LD~~~~~~i~~~l~~l~~~g~tii~~~H  232 (606)
                      +|+++++||+-.- .+........+.+..+...|..++.++|
T Consensus        84 ~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N  125 (228)
T 2r8r_A           84 APSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN  125 (228)
T ss_dssp             CCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence            4999999997632 3322222233333444556889999998

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.96  E-value=0.016  Score=59.57  Aligned_cols=26  Identities=31%  Similarity=0.461  Sum_probs=22.8

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .+..-+.|.||+|+|||+|.++++..
T Consensus        49 ~~~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           49 KPTSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            45667899999999999999999865

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=95.95  E-value=0.0037  Score=62.31  Aligned_cols=23  Identities=26%  Similarity=0.377  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++++|+||||||||||.+.|++.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~   24 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQE   24 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhc
Confidence            37899999999999999999874

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=95.93  E-value=0.0042  Score=59.86  Aligned_cols=24  Identities=25%  Similarity=0.522  Sum_probs=21.9

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      .+-+++|.|++||||||+.+.|+.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999987

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=95.91  E-value=0.0035  Score=58.43  Aligned_cols=25  Identities=28%  Similarity=0.329  Sum_probs=22.4

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      .++..+.|.|++||||||+.+.|+.
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence            4577899999999999999999984

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.90  E-value=0.0037  Score=59.60  Aligned_cols=22  Identities=55%  Similarity=0.717  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .+.|+||||||||||++.|...
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4789999999999999998653

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=95.89  E-value=0.0043  Score=58.72  Aligned_cols=26  Identities=19%  Similarity=0.165  Sum_probs=23.7

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      +|.+++|.|++||||||+.+.|+...
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            67899999999999999999998764

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=95.88  E-value=0.0046  Score=58.69  Aligned_cols=26  Identities=38%  Similarity=0.510  Sum_probs=23.3

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      +|.+++|.|++||||||+.+.|+...
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l   28 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWI   28 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            57889999999999999999998754

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=95.87  E-value=0.0041  Score=58.66  Aligned_cols=22  Identities=45%  Similarity=0.582  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +++|.|++||||||+.+.|+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            5899999999999999999874

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.87  E-value=0.035  Score=59.83  Aligned_cols=64  Identities=22%  Similarity=0.391  Sum_probs=40.8

Q ss_pred             cCCcEEEEeCCCC----------CCCHHHHHHHHHHHHHHHh----CCCEEEEEecCCchHHHhhcceeeeecCCcE---
Q psy13765        191 NNPRVMFLDEPTT----------GLDSQSCSQCIKLLKMISQ----QGRTIICTIHQPSATLFQMFDQVYLLSGGQC---  253 (606)
Q Consensus       191 ~~P~lllLDEPTs----------gLD~~~~~~i~~~l~~l~~----~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~---  253 (606)
                      ..|.|+|+||--+          +-|......+.++|.++-.    .+.-||++|++|..     .|.- +++.||.   
T Consensus       273 ~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~-----LDpA-llRpGRfD~~  346 (437)
T 4b4t_L          273 HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT-----LDPA-LLRPGRLDRK  346 (437)
T ss_dssp             SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS-----SCTT-TTSTTSEEEE
T ss_pred             cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh-----hCHH-HhCCCcccee
Confidence            3499999999753          2244455566677777642    35689999998762     3543 3466664   


Q ss_pred             EEEcChh
Q psy13765        254 LYQGATD  260 (606)
Q Consensus       254 ~~~G~~~  260 (606)
                      ++.+.|+
T Consensus       347 I~i~lPd  353 (437)
T 4b4t_L          347 VEIPLPN  353 (437)
T ss_dssp             ECCCCCC
T ss_pred             eecCCcC
Confidence            5666664

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=95.80  E-value=0.005  Score=56.84  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      .++.|.|++||||||+.+.|+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4789999999999999999986

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=95.79  E-value=0.0049  Score=66.77  Aligned_cols=22  Identities=32%  Similarity=0.694  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .++|+|++|+|||||+|.|+|.
T Consensus        25 ~V~lvG~~nvGKSTL~n~l~~~   46 (456)
T 4dcu_A           25 VVAIVGRPNVGKSTIFNRIAGE   46 (456)
T ss_dssp             EEEEECSSSSSHHHHHHHHEEE
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            6899999999999999999884

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.78  E-value=0.031  Score=57.31  Aligned_cols=24  Identities=33%  Similarity=0.551  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      ..+.|.||+|+|||||.+.++...
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~~   79 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYEM   79 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHh
Confidence            458999999999999999998754

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=95.75  E-value=0.0048  Score=58.78  Aligned_cols=26  Identities=27%  Similarity=0.431  Sum_probs=23.4

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++|.+++|.|++||||||+.+.|+..
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            46889999999999999999999864

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=95.74  E-value=0.0048  Score=62.73  Aligned_cols=37  Identities=22%  Similarity=0.284  Sum_probs=29.0

Q ss_pred             EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECC
Q psy13765         59 FPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG   98 (606)
Q Consensus        59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G   98 (606)
                      -..|.++.|.|||||||||+.+.|+...+   .|.+.+++
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~   66 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDN   66 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEec
Confidence            34678999999999999999999986432   25566665

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=95.70  E-value=0.005  Score=57.83  Aligned_cols=26  Identities=19%  Similarity=0.402  Sum_probs=23.2

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .++.+++|.|++||||||+.+.|+..
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~   32 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQK   32 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            46789999999999999999999853

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=95.68  E-value=0.0051  Score=57.06  Aligned_cols=22  Identities=36%  Similarity=0.471  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .+.|+||+||||||+.+.|+..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~   27 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKD   27 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4889999999999999999864

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=95.65  E-value=0.0046  Score=61.96  Aligned_cols=23  Identities=30%  Similarity=0.752  Sum_probs=21.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++|+|++|||||||+|.|+|..
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999974

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=95.61  E-value=0.0057  Score=58.35  Aligned_cols=27  Identities=30%  Similarity=0.251  Sum_probs=23.6

Q ss_pred             EeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         59 FPSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .++|.+++|.|++||||||+.+.|+..
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~   32 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVEA   32 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            357889999999999999999999854

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=95.61  E-value=0.0061  Score=57.56  Aligned_cols=24  Identities=33%  Similarity=0.603  Sum_probs=21.6

Q ss_pred             CeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         62 NQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        62 Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ..+++|.|++||||||+.+.|+..
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            457999999999999999999874

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.58  E-value=0.007  Score=56.55  Aligned_cols=24  Identities=21%  Similarity=0.387  Sum_probs=21.1

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ++.+++|.|++||||||+.+.|+.
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999999975

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=95.56  E-value=0.0027  Score=60.68  Aligned_cols=23  Identities=57%  Similarity=0.754  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      +++|.|++||||||+++.|+..+
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l   24 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAF   24 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998764

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=95.55  E-value=0.025  Score=58.62  Aligned_cols=42  Identities=19%  Similarity=0.241  Sum_probs=27.7

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765        192 NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS  235 (606)
Q Consensus       192 ~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~  235 (606)
                      +++++++||.- .|+......+.+.+.+. ..+..+|++++++.
T Consensus       119 ~~~vliiDe~~-~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~~  160 (373)
T 1jr3_A          119 RFKVYLIDEVH-MLSRHSFNALLKTLEEP-PEHVKFLLATTDPQ  160 (373)
T ss_dssp             SSEEEEEECGG-GSCHHHHHHHHHHHHSC-CSSEEEEEEESCGG
T ss_pred             CeEEEEEECcc-hhcHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence            37899999953 47777666666655432 12566777887754

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=95.50  E-value=0.0066  Score=56.62  Aligned_cols=22  Identities=27%  Similarity=0.437  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++.|.|++||||||+.+.|+..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~   24 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999864

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.45  E-value=0.037  Score=59.54  Aligned_cols=27  Identities=22%  Similarity=0.368  Sum_probs=23.1

Q ss_pred             EeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         59 FPSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +++-.=+.+.||+|+|||+|.+++|+.
T Consensus       212 ~~~prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          212 IRAPKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence            445556889999999999999999985

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.44  E-value=0.045  Score=59.16  Aligned_cols=27  Identities=22%  Similarity=0.395  Sum_probs=23.2

Q ss_pred             EeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         59 FPSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +++-.=+.+.||+|+|||+|.++||+.
T Consensus       240 i~pprGILLyGPPGTGKTlLAkAiA~e  266 (467)
T 4b4t_H          240 IDPPKGILLYGPPGTGKTLCARAVANR  266 (467)
T ss_dssp             CCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred             CCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence            455566889999999999999999985

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.40  E-value=0.0082  Score=56.30  Aligned_cols=24  Identities=17%  Similarity=0.350  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .+++|+|++|||||||++.|.+.+
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhh
Confidence            478999999999999999988753

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=95.38  E-value=0.0082  Score=54.67  Aligned_cols=23  Identities=30%  Similarity=0.686  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      -++|+|++|+|||||++.+.+..
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCccHHHHHHHHhcCC
Confidence            47899999999999999999853

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.37  E-value=0.0083  Score=54.27  Aligned_cols=22  Identities=36%  Similarity=0.484  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .++++|++|+|||||++.+.+.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999874

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.36  E-value=0.059  Score=57.74  Aligned_cols=62  Identities=18%  Similarity=0.357  Sum_probs=39.6

Q ss_pred             CcEEEEeCCCC----------CCCHHHHHHHHHHHHHHHh----CCCEEEEEecCCchHHHhhcceeeeecCCcE---EE
Q psy13765        193 PRVMFLDEPTT----------GLDSQSCSQCIKLLKMISQ----QGRTIICTIHQPSATLFQMFDQVYLLSGGQC---LY  255 (606)
Q Consensus       193 P~lllLDEPTs----------gLD~~~~~~i~~~l~~l~~----~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~---~~  255 (606)
                      |.|+|+||--+          +=|......+.++|..+-.    .+.-||++|++|..     .|.-+ ++-||.   ++
T Consensus       276 P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~-----LDpAL-lRpGRfD~~I~  349 (437)
T 4b4t_I          276 PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIET-----LDPAL-IRPGRIDRKIL  349 (437)
T ss_dssp             SEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTT-----CCTTS-SCTTTEEEEEC
T ss_pred             CcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhh-----cCHHH-hcCCceeEEEE
Confidence            99999999543          2233445566677766643    35689999998763     35443 466665   56


Q ss_pred             EcChh
Q psy13765        256 QGATD  260 (606)
Q Consensus       256 ~G~~~  260 (606)
                      .+.|+
T Consensus       350 v~lPd  354 (437)
T 4b4t_I          350 FENPD  354 (437)
T ss_dssp             CCCCC
T ss_pred             cCCcC
Confidence            66664

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=95.36  E-value=0.0068  Score=54.80  Aligned_cols=23  Identities=30%  Similarity=0.673  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      -++|+|++|+|||||++.+.|..
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~~   26 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGVE   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCcc
Confidence            37899999999999999998754

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=95.34  E-value=0.0063  Score=57.26  Aligned_cols=27  Identities=26%  Similarity=0.429  Sum_probs=23.6

Q ss_pred             EeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         59 FPSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .+++.+++|.|++||||||+.+.|+..
T Consensus         9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A            9 LRKCKIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             HHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            346789999999999999999999864

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=95.33  E-value=0.0091  Score=57.58  Aligned_cols=26  Identities=27%  Similarity=0.469  Sum_probs=22.4

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++|..+.|+|++||||||+.+.|+..
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~   27 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQER   27 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            35678999999999999999999864

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.33  E-value=0.0067  Score=56.60  Aligned_cols=25  Identities=40%  Similarity=0.607  Sum_probs=22.0

Q ss_pred             CeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         62 NQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        62 Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .-.++|+|++|+|||||++.+.+..
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3478999999999999999998864

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=95.33  E-value=0.013  Score=54.74  Aligned_cols=22  Identities=27%  Similarity=0.339  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.+.+.
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999876653

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=95.29  E-value=0.01  Score=61.09  Aligned_cols=37  Identities=24%  Similarity=0.136  Sum_probs=32.1

Q ss_pred             ccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         48 PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        48 ~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +...+++....+ .|+-++|+|+||+||||+...|.++
T Consensus       131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence            346788888887 7999999999999999999999874

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=95.26  E-value=0.05  Score=55.55  Aligned_cols=27  Identities=33%  Similarity=0.523  Sum_probs=23.4

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      +.+.-+.|.||+|+|||++.+.|....
T Consensus        23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~   49 (304)
T 1ojl_A           23 PSDATVLIHGDSGTGKELVARALHACS   49 (304)
T ss_dssp             STTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred             CCCCcEEEECCCCchHHHHHHHHHHhC
Confidence            566778999999999999999998753

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=95.26  E-value=0.0094  Score=54.04  Aligned_cols=22  Identities=36%  Similarity=0.738  Sum_probs=19.6

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      ++|+|++|+|||||++.+.+..
T Consensus         5 i~ivG~~~~GKSsli~~l~~~~   26 (169)
T 3q85_A            5 VMLVGESGVGKSTLAGTFGGLQ   26 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHCC-
T ss_pred             EEEECCCCCCHHHHHHHHHhcc
Confidence            7899999999999999998753

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=95.26  E-value=0.0074  Score=54.50  Aligned_cols=22  Identities=23%  Similarity=0.389  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .++|+|++|+|||||++.+.+.
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4789999999999999999875

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.25  E-value=0.0066  Score=56.38  Aligned_cols=25  Identities=32%  Similarity=0.452  Sum_probs=17.9

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++.++.|.|++||||||+.+.|+..
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~   28 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHER   28 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            4678999999999999999999854

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=95.22  E-value=0.0089  Score=54.67  Aligned_cols=22  Identities=45%  Similarity=0.588  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.+.+.
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=95.21  E-value=0.028  Score=65.68  Aligned_cols=37  Identities=22%  Similarity=0.313  Sum_probs=27.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCc
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH   99 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~   99 (606)
                      ..+.|.||+|+|||++.+.|+........--|.+|..
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~  625 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT  625 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEech
Confidence            5789999999999999999998643211234556653

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=95.18  E-value=0.01  Score=59.87  Aligned_cols=23  Identities=35%  Similarity=0.710  Sum_probs=21.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++|+|++|+|||||+|.|+|..
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999964

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=95.18  E-value=0.012  Score=53.77  Aligned_cols=25  Identities=32%  Similarity=0.550  Sum_probs=22.0

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +.-.++|+|++|+|||||++.+.+.
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3457899999999999999999885

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=95.18  E-value=0.0082  Score=53.93  Aligned_cols=22  Identities=27%  Similarity=0.431  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.+.+.
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999864

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=95.14  E-value=0.0085  Score=53.74  Aligned_cols=23  Identities=39%  Similarity=0.538  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++++|++|+|||||++.+.+..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998753

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=95.13  E-value=0.0087  Score=55.68  Aligned_cols=23  Identities=35%  Similarity=0.507  Sum_probs=20.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -.++|+|++|+|||||++.+.+.
T Consensus        17 ~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           17 VRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999999875

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=95.12  E-value=0.0085  Score=53.86  Aligned_cols=22  Identities=27%  Similarity=0.342  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++++|++|+|||||++.+.+.
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999875

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.11  E-value=0.011  Score=56.01  Aligned_cols=22  Identities=36%  Similarity=0.594  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +++|.|++||||||+.+.|+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~   25 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAA   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            7999999999999999999874

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=95.10  E-value=0.01  Score=57.65  Aligned_cols=26  Identities=23%  Similarity=0.345  Sum_probs=21.8

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .++.++.|.|++||||||+.+.|+..
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~   30 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTH   30 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999854

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=95.08  E-value=0.0079  Score=53.87  Aligned_cols=22  Identities=32%  Similarity=0.453  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .++++|++|+|||||++.+.+.
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999999875

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=95.06  E-value=0.013  Score=55.65  Aligned_cols=25  Identities=32%  Similarity=0.505  Sum_probs=21.9

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .+.+++|.|++||||||+.+.|+..
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999999753

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=95.06  E-value=0.0093  Score=53.94  Aligned_cols=23  Identities=26%  Similarity=0.450  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      -++|+|++|+|||||++.+.+..
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47899999999999999998864

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.04  E-value=0.0094  Score=55.58  Aligned_cols=24  Identities=38%  Similarity=0.523  Sum_probs=21.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      -.++|+|++|+|||||++.|.+..
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            358999999999999999999863

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=95.04  E-value=0.0094  Score=54.00  Aligned_cols=22  Identities=23%  Similarity=0.342  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.+.+.
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4789999999999999999865

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.02  E-value=0.0095  Score=53.77  Aligned_cols=23  Identities=22%  Similarity=0.388  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      -++++|++|+|||||++.+.+..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            37899999999999999998753

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.00  E-value=0.069  Score=52.80  Aligned_cols=28  Identities=29%  Similarity=0.456  Sum_probs=23.6

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGYRS   87 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~~   87 (606)
                      +.+.-+.|.||+|+|||+|.+.|+....
T Consensus        27 ~~~~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           27 PLDKPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             TSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             CCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence            3456788999999999999999987643

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=95.00  E-value=0.013  Score=55.48  Aligned_cols=25  Identities=28%  Similarity=0.410  Sum_probs=21.6

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ...+++|.|++||||||+.+.|+..
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~   38 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKD   38 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999999753

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=95.00  E-value=0.0098  Score=54.35  Aligned_cols=22  Identities=32%  Similarity=0.554  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.+.+.
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999865

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=94.99  E-value=0.012  Score=56.31  Aligned_cols=22  Identities=32%  Similarity=0.457  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .++|.||+||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999653

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=94.99  E-value=0.0098  Score=53.60  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.+.+.
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999999864

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=94.98  E-value=0.0099  Score=54.38  Aligned_cols=23  Identities=35%  Similarity=0.577  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++|+|++|+|||||++.+.+..
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            48999999999999999998753

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=94.98  E-value=0.01  Score=55.09  Aligned_cols=23  Identities=43%  Similarity=0.590  Sum_probs=21.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++|+|++|+|||||++.+.+..
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCc
Confidence            68899999999999999999864

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=94.96  E-value=0.0089  Score=54.06  Aligned_cols=23  Identities=39%  Similarity=0.524  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      -++|+|++|+|||||++.+.+..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            37899999999999999998753

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=94.95  E-value=0.0045  Score=65.50  Aligned_cols=46  Identities=17%  Similarity=0.133  Sum_probs=39.3

Q ss_pred             cCCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q psy13765        191 NNPRVMFLDEPTTGLD---SQSCSQCIKLLKMISQQGRTIICTIHQPSA  236 (606)
Q Consensus       191 ~~P~lllLDEPTsgLD---~~~~~~i~~~l~~l~~~g~tii~~~H~~~~  236 (606)
                      ..|.++++||-=.=++   +.....+.+.+++.++.|..++++||.|+.
T Consensus       261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d  309 (392)
T 4ag6_A          261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID  309 (392)
T ss_dssp             CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred             CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence            4689999999987774   667788889999988889999999999874

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=94.95  E-value=0.014  Score=53.66  Aligned_cols=24  Identities=38%  Similarity=0.414  Sum_probs=21.1

Q ss_pred             CeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         62 NQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        62 Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      =+.++|.|+.||||||+.+.|+..
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHH
Confidence            368999999999999999999863

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=94.94  E-value=0.013  Score=54.69  Aligned_cols=22  Identities=41%  Similarity=0.599  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +++|.|++||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~   23 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEY   23 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999764

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=94.92  E-value=0.012  Score=54.15  Aligned_cols=23  Identities=22%  Similarity=0.353  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .+++|.|++||||||+.+.|+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999763

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=94.91  E-value=0.011  Score=54.76  Aligned_cols=22  Identities=41%  Similarity=0.608  Sum_probs=20.1

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      ++|+|++|+|||||++.+.+..
T Consensus         4 i~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            4 IIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHhCcC
Confidence            6899999999999999999853

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=94.89  E-value=0.017  Score=60.68  Aligned_cols=37  Identities=24%  Similarity=0.283  Sum_probs=27.6

Q ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCC----------CCCccEEEECC
Q psy13765         62 NQLIAIMGPSGAGKSSLLDVLSGYRS----------NGVTGQILTNG   98 (606)
Q Consensus        62 Ge~~aIiGpsGaGKSTLL~~L~g~~~----------~~~~G~I~~~G   98 (606)
                      |-.++|+|.+|+|||||+|.|+|...          .+..|.+.+++
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~   48 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD   48 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence            34689999999999999999998321          11357777665

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=94.89  E-value=0.043  Score=60.22  Aligned_cols=37  Identities=19%  Similarity=0.146  Sum_probs=29.3

Q ss_pred             ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .+++.+...+..|.-+.|.||+|+|||+|.+.|+...
T Consensus        29 ~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l   65 (500)
T 3nbx_X           29 HAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF   65 (500)
T ss_dssp             HHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred             HHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHH
Confidence            3444444555677889999999999999999999864

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=94.87  E-value=0.011  Score=57.09  Aligned_cols=25  Identities=16%  Similarity=0.303  Sum_probs=21.8

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .+..+.|+||+||||||+.+.|+..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~   28 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTK   28 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999999854

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=94.84  E-value=0.013  Score=53.55  Aligned_cols=22  Identities=27%  Similarity=0.477  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.+.+.
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4789999999999999999874

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=94.84  E-value=0.041  Score=63.39  Aligned_cols=23  Identities=30%  Similarity=0.557  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .+.+.||+|+|||++.++|+...
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l  545 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESI  545 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999998764

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=94.84  E-value=0.016  Score=57.78  Aligned_cols=25  Identities=32%  Similarity=0.434  Sum_probs=22.5

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++.++.|.|++||||||+.+.|+..
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999864

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=94.83  E-value=0.01  Score=54.25  Aligned_cols=22  Identities=27%  Similarity=0.386  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.+.+.
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4799999999999999999875

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=94.82  E-value=0.015  Score=53.11  Aligned_cols=22  Identities=32%  Similarity=0.333  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .++|.|++||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRS   23 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999763

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=94.82  E-value=0.012  Score=53.17  Aligned_cols=22  Identities=32%  Similarity=0.383  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.+.+.
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999864

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.82  E-value=0.0086  Score=55.14  Aligned_cols=24  Identities=38%  Similarity=0.488  Sum_probs=20.9

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      +.-.++|+|++|+|||||++.+.+
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            445789999999999999999875

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=94.81  E-value=0.015  Score=55.84  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .++|+||+||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999999753

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=94.81  E-value=0.012  Score=54.36  Aligned_cols=22  Identities=32%  Similarity=0.454  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.|.+.
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999875

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=94.81  E-value=0.014  Score=54.23  Aligned_cols=24  Identities=17%  Similarity=0.356  Sum_probs=21.2

Q ss_pred             CeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         62 NQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        62 Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ..+++|.|++||||||+.+.|+..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999753

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=94.80  E-value=0.012  Score=54.78  Aligned_cols=22  Identities=32%  Similarity=0.398  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.|.+.
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999885

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=94.80  E-value=0.012  Score=54.84  Aligned_cols=23  Identities=26%  Similarity=0.367  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .+++|+|++||||||+.+.|+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKA   25 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999764

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=94.77  E-value=0.023  Score=58.07  Aligned_cols=41  Identities=20%  Similarity=0.233  Sum_probs=27.2

Q ss_pred             CcEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765        193 PRVMFLDEPTTGLD-SQSCSQCIKLLKMISQQGRTIICTIHQPS  235 (606)
Q Consensus       193 P~lllLDEPTsgLD-~~~~~~i~~~l~~l~~~g~tii~~~H~~~  235 (606)
                      ++++++||.-. |. ......+.+.+.+.. .+..+|++++++.
T Consensus       106 ~~vliiDEi~~-l~~~~~~~~L~~~le~~~-~~~~iI~~~n~~~  147 (324)
T 3u61_B          106 QKVIVIDEFDR-SGLAESQRHLRSFMEAYS-SNCSIIITANNID  147 (324)
T ss_dssp             EEEEEEESCCC-GGGHHHHHHHHHHHHHHG-GGCEEEEEESSGG
T ss_pred             CeEEEEECCcc-cCcHHHHHHHHHHHHhCC-CCcEEEEEeCCcc
Confidence            89999999743 44 555555556565443 3567888887754

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=94.77  E-value=0.012  Score=53.30  Aligned_cols=23  Identities=39%  Similarity=0.463  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -.++|+|++|+|||||++.+.+-
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999999764

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=94.73  E-value=0.078  Score=61.30  Aligned_cols=28  Identities=21%  Similarity=0.409  Sum_probs=23.7

Q ss_pred             EeCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         59 FPSNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      +++-.-+.+.||+|+|||||.+++++..
T Consensus       235 ~~~p~GILL~GPPGTGKT~LAraiA~el  262 (806)
T 3cf2_A          235 VKPPRGILLYGPPGTGKTLIARAVANET  262 (806)
T ss_dssp             CCCCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4455568899999999999999999864

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=94.70  E-value=0.013  Score=54.75  Aligned_cols=23  Identities=30%  Similarity=0.603  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      -++|+|++|+|||||++.+.+..
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47999999999999999998753

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=94.70  E-value=0.013  Score=54.22  Aligned_cols=22  Identities=32%  Similarity=0.412  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .++|+|++|+|||||++.+.+.
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999874

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=94.70  E-value=0.018  Score=56.80  Aligned_cols=25  Identities=20%  Similarity=0.280  Sum_probs=22.3

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      +++-.++|.||+||||||+.+.|+.
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3677899999999999999999974

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=94.69  E-value=0.013  Score=52.77  Aligned_cols=21  Identities=33%  Similarity=0.404  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++++|++|+|||||++.+.+.
T Consensus         3 i~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            689999999999999999763

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=94.69  E-value=0.013  Score=58.83  Aligned_cols=23  Identities=35%  Similarity=0.512  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++|+|++|+|||||+|.|.+..
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~~   32 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLTD   32 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            38899999999999999998753

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=94.67  E-value=0.016  Score=59.21  Aligned_cols=26  Identities=42%  Similarity=0.655  Sum_probs=22.6

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      +.| .++|+|++|+|||||+|.|.|..
T Consensus         6 ~~g-~V~ivG~~nvGKSTLln~l~g~~   31 (301)
T 1wf3_A            6 YSG-FVAIVGKPNVGKSTLLNNLLGVK   31 (301)
T ss_dssp             EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             cCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence            445 58999999999999999999863

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=94.61  E-value=0.017  Score=53.45  Aligned_cols=26  Identities=23%  Similarity=0.466  Sum_probs=22.3

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      +.=.++|+|++|+|||||++.+.+..
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            44568999999999999999998754

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=94.59  E-value=0.015  Score=58.05  Aligned_cols=23  Identities=22%  Similarity=0.486  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++|+|++|+|||||+|.|+|..
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            57999999999999999999963

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.58  E-value=0.014  Score=53.39  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      -++|+|++|+|||||++.+.+..
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            47899999999999999998753

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=94.57  E-value=0.018  Score=59.03  Aligned_cols=23  Identities=43%  Similarity=0.707  Sum_probs=21.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++|+|++|+|||||+|.|.|..
T Consensus        12 ~v~ivG~~nvGKSTLin~l~g~~   34 (308)
T 3iev_A           12 YVAIVGKPNVGKSTLLNNLLGTK   34 (308)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            78999999999999999999863

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=94.56  E-value=0.014  Score=53.53  Aligned_cols=22  Identities=27%  Similarity=0.342  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .++|+|++|+|||||++.+.+.
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            4889999999999999999874

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=94.56  E-value=0.014  Score=55.10  Aligned_cols=22  Identities=36%  Similarity=0.684  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .++|+|++|+|||||++.++|.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5799999999999999999864

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=94.56  E-value=0.015  Score=53.09  Aligned_cols=23  Identities=35%  Similarity=0.528  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      -++|+|++|+|||||++.+.+..
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            48899999999999999998753

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=94.54  E-value=0.013  Score=53.41  Aligned_cols=22  Identities=23%  Similarity=0.357  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.+.+.
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999864

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=94.53  E-value=0.031  Score=53.79  Aligned_cols=36  Identities=22%  Similarity=0.182  Sum_probs=29.8

Q ss_pred             cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ...+++.-..+ .|..++|+||+|+|||||...|+..
T Consensus        22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            45677766655 5889999999999999999999865

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=94.50  E-value=0.015  Score=53.23  Aligned_cols=23  Identities=35%  Similarity=0.478  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      -++|+|++|+|||||++.+.+..
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~~   36 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKDQ   36 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47999999999999999998753

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=94.49  E-value=0.015  Score=53.98  Aligned_cols=22  Identities=32%  Similarity=0.453  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .++++|++|+|||||++.|++.
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5889999999999999999875

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=94.48  E-value=0.019  Score=56.75  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -+++|.|++||||||+.+.|+..
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~~   45 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQL   45 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999874

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=94.46  E-value=0.016  Score=53.84  Aligned_cols=24  Identities=25%  Similarity=0.303  Sum_probs=21.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYRS   87 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~~   87 (606)
                      -++|+|++|+|||||++.+.|...
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcc
Confidence            478999999999999999998643

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.45  E-value=0.015  Score=55.38  Aligned_cols=23  Identities=43%  Similarity=0.652  Sum_probs=20.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++|+|++|+|||||++.|.+..
T Consensus        14 ~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           14 SIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998754

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=94.42  E-value=0.023  Score=52.09  Aligned_cols=26  Identities=19%  Similarity=0.434  Sum_probs=22.5

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ..+..+.|.||+|+|||||++.++..
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHH
Confidence            44577899999999999999999875

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=94.40  E-value=0.021  Score=54.47  Aligned_cols=25  Identities=28%  Similarity=0.563  Sum_probs=21.8

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ...+++|.|++||||||+.+.|+..
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHh
Confidence            3468999999999999999999753

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=94.40  E-value=0.018  Score=57.01  Aligned_cols=23  Identities=26%  Similarity=0.406  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++|+|++|+|||||++.|.|..
T Consensus        24 ~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           24 RIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999863

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=94.39  E-value=0.019  Score=53.71  Aligned_cols=22  Identities=32%  Similarity=0.644  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.+.+.
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=94.39  E-value=0.016  Score=54.32  Aligned_cols=22  Identities=27%  Similarity=0.342  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.+.+.
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999864

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=94.38  E-value=0.02  Score=57.09  Aligned_cols=23  Identities=35%  Similarity=0.647  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++|+|++|+|||||+|.|+|..
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            48999999999999999999853

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=94.37  E-value=0.017  Score=54.38  Aligned_cols=23  Identities=35%  Similarity=0.621  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++|+|++|+|||||++.+.+..
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            48999999999999999998753

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=94.37  E-value=0.021  Score=53.70  Aligned_cols=23  Identities=35%  Similarity=0.390  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      -++|+|++|+|||||++.+.+..
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47999999999999999998853

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=94.34  E-value=0.017  Score=53.72  Aligned_cols=23  Identities=26%  Similarity=0.355  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      -++|+|++|+|||||++.+.+..
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47999999999999999998753

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=94.34  E-value=0.015  Score=53.58  Aligned_cols=22  Identities=32%  Similarity=0.510  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.+.+.
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999875

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=94.33  E-value=0.016  Score=61.12  Aligned_cols=21  Identities=33%  Similarity=0.612  Sum_probs=19.8

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++|+|++|+|||||+|.|++.
T Consensus         4 v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            4 VGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             EEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999999985

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=94.32  E-value=0.017  Score=53.67  Aligned_cols=23  Identities=35%  Similarity=0.492  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      -++|+|++|+|||||++.+.+..
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            48999999999999999998753

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=94.32  E-value=0.24  Score=53.36  Aligned_cols=26  Identities=23%  Similarity=0.508  Sum_probs=23.3

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      ++.+++++|++|+||||+...|+...
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l  124 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYF  124 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence            57899999999999999999998654

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=94.27  E-value=0.012  Score=59.90  Aligned_cols=25  Identities=28%  Similarity=0.547  Sum_probs=18.9

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++-+++|.||+||||||+.+.|+..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~   28 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQI   28 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999999763

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.26  E-value=0.016  Score=54.01  Aligned_cols=22  Identities=32%  Similarity=0.450  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.+.+-
T Consensus        10 ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            5899999999999999999874

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=94.26  E-value=0.018  Score=52.95  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .++|+|++|+|||||++.+.+.
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999864

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=94.25  E-value=0.02  Score=57.63  Aligned_cols=23  Identities=35%  Similarity=0.732  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++|+|++|+|||||+|.|+|..
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999863

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=94.24  E-value=0.022  Score=55.03  Aligned_cols=23  Identities=30%  Similarity=0.547  Sum_probs=20.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -.++|+|++|+|||||++.+.+.
T Consensus        30 ~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           30 KTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999875

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=94.24  E-value=0.019  Score=58.29  Aligned_cols=23  Identities=35%  Similarity=0.619  Sum_probs=21.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++|+|+.|+|||||+|.|+|..
T Consensus        26 ~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           26 QIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHHCCC
Confidence            68999999999999999999974

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=94.23  E-value=0.02  Score=56.29  Aligned_cols=29  Identities=24%  Similarity=0.391  Sum_probs=21.4

Q ss_pred             EEeCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      +..+|.++.+.|++||||||+.+.|+..+
T Consensus        21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l   49 (227)
T 3v9p_A           21 SMARGKFITFEGIDGAGKTTHLQWFCDRL   49 (227)
T ss_dssp             --CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34689999999999999999999998653

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=94.22  E-value=0.024  Score=54.97  Aligned_cols=22  Identities=32%  Similarity=0.573  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .+.|.|++||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~   23 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDK   23 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999753

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=94.22  E-value=0.023  Score=53.01  Aligned_cols=24  Identities=13%  Similarity=0.361  Sum_probs=21.1

Q ss_pred             CeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         62 NQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        62 Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .-.++|+|++|+|||||++.+.+.
T Consensus        17 ~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           17 KLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcC
Confidence            345789999999999999999875

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=94.21  E-value=0.019  Score=52.73  Aligned_cols=22  Identities=23%  Similarity=0.336  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++++|++|+|||||++.+.+.
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999864

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=94.20  E-value=0.017  Score=53.75  Aligned_cols=23  Identities=17%  Similarity=0.404  Sum_probs=20.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++|+|++|+|||||++.+.+..
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           23 HVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EEEEEECTTSSHHHHHHHTSCGG
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58899999999999999998754

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=94.20  E-value=0.017  Score=54.03  Aligned_cols=23  Identities=26%  Similarity=0.473  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      -++|+|++|+|||||++.+.+..
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47999999999999999998753

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=94.20  E-value=0.036  Score=52.18  Aligned_cols=35  Identities=23%  Similarity=0.145  Sum_probs=27.9

Q ss_pred             cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765         49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      +..++..-..+ .|.-++|.|+||+|||||...|..
T Consensus         4 ~~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A            4 KQTWHANFLVI-DKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             CEEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             cEEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            44566665554 588999999999999999988864

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=94.20  E-value=0.022  Score=54.91  Aligned_cols=25  Identities=16%  Similarity=0.426  Sum_probs=21.7

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +|-.+.|+|++||||||+.+.|+..
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~   28 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKE   28 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            3567899999999999999999764

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=94.19  E-value=0.027  Score=54.85  Aligned_cols=28  Identities=21%  Similarity=0.457  Sum_probs=24.1

Q ss_pred             EEeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         58 RFPSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ..++..++.|+||+||||+|..+.|+..
T Consensus        25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           25 KLAKAKVIFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             CTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             hccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4466789999999999999999999854

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=94.19  E-value=0.028  Score=54.55  Aligned_cols=27  Identities=33%  Similarity=0.495  Sum_probs=23.6

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      -+|.++.+.|++||||||+.+.|+..+
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l   30 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERL   30 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence            468999999999999999999997654

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=94.18  E-value=0.017  Score=53.55  Aligned_cols=22  Identities=36%  Similarity=0.572  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.+.+.
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.16  E-value=0.022  Score=52.86  Aligned_cols=24  Identities=29%  Similarity=0.419  Sum_probs=21.0

Q ss_pred             CeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         62 NQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        62 Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .=.++|+|++|+|||||++.+.+.
T Consensus        16 ~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           16 EHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            346899999999999999999864

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=94.14  E-value=0.02  Score=53.21  Aligned_cols=22  Identities=27%  Similarity=0.353  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.+.+.
T Consensus        22 ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999864

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=94.14  E-value=0.022  Score=53.74  Aligned_cols=22  Identities=32%  Similarity=0.540  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.+.+.
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4789999999999999999875

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=94.12  E-value=0.012  Score=56.41  Aligned_cols=24  Identities=42%  Similarity=0.565  Sum_probs=21.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      -.++|+|++|+|||||+|.|.|..
T Consensus        30 ~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCC
Confidence            368999999999999999999864

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=94.10  E-value=0.02  Score=53.83  Aligned_cols=21  Identities=33%  Similarity=0.803  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      .++|+|++|+|||||++.+.|
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999999986

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=94.10  E-value=0.026  Score=53.68  Aligned_cols=23  Identities=26%  Similarity=0.482  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      -++|+|++|+|||||++.+.+..
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~~   49 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDNK   49 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47899999999999999999853

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=94.07  E-value=0.023  Score=57.41  Aligned_cols=23  Identities=35%  Similarity=0.504  Sum_probs=20.8

Q ss_pred             CeEEEEECCCCCCHHHHHHHHhC
Q psy13765         62 NQLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        62 Ge~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ..+++|.|++||||||+.+.|+.
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999983

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=94.04  E-value=0.022  Score=53.19  Aligned_cols=23  Identities=39%  Similarity=0.548  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      -++|+|++|+|||||++.+.+..
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47899999999999999998753

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=94.04  E-value=0.021  Score=52.83  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .++|+|++|+|||||++.+.+.
T Consensus        23 ~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           23 KVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEETTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999875

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=94.04  E-value=0.022  Score=52.23  Aligned_cols=22  Identities=23%  Similarity=0.303  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.+.+.
T Consensus        10 ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D           10 KCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999864

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=94.03  E-value=0.028  Score=56.73  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      .++.|+|++||||||+.+.|+.
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999986

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=94.02  E-value=0.019  Score=54.12  Aligned_cols=24  Identities=25%  Similarity=0.315  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      =-++|+|++|+|||||++.+.+..
T Consensus        25 ~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           25 RKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            358899999999999999998753

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=94.01  E-value=0.021  Score=54.64  Aligned_cols=23  Identities=30%  Similarity=0.468  Sum_probs=20.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -.++|+|++|+|||||++.|++.
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            47999999999999999999864

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=93.98  E-value=0.022  Score=52.78  Aligned_cols=23  Identities=48%  Similarity=0.566  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++|+|++|+|||||++.+.+..
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58899999999999999998753

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=93.97  E-value=0.023  Score=52.98  Aligned_cols=22  Identities=18%  Similarity=0.442  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.+.+.
T Consensus        24 ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999864

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=93.95  E-value=0.023  Score=53.22  Aligned_cols=22  Identities=36%  Similarity=0.499  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.+.+.
T Consensus        30 ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           30 KLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999875

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=93.95  E-value=0.032  Score=54.40  Aligned_cols=26  Identities=31%  Similarity=0.539  Sum_probs=22.4

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ..+..+.|+|++||||||+.+.|+..
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~~   39 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAKN   39 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34568999999999999999999864

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=93.95  E-value=0.029  Score=52.61  Aligned_cols=24  Identities=21%  Similarity=0.300  Sum_probs=20.6

Q ss_pred             CeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         62 NQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        62 Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .=-++|+|++|+|||||++.+.+.
T Consensus        20 ~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           20 GVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            345899999999999999999875

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=93.94  E-value=0.02  Score=53.38  Aligned_cols=23  Identities=30%  Similarity=0.372  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      -++|+|++|+|||||++.+.+..
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            47899999999999999998753

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=93.94  E-value=0.037  Score=58.17  Aligned_cols=74  Identities=28%  Similarity=0.552  Sum_probs=63.4

Q ss_pred             HHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCch-hhhHHHHHHhhhc--CCcEEEE
Q psy13765        125 IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPND-QKKRLSIALELIN--NPRVMFL  198 (606)
Q Consensus       125 v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g-~~krl~IA~aL~~--~P~lllL  198 (606)
                      ++++++.+||.+..++++.+|||||||||+|||||+.+|+++++|||+++|+.. +++-+.+.+.+..  +-.+++.
T Consensus       144 v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~v  220 (366)
T 3tui_C          144 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLI  220 (366)
T ss_dssp             HHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred             HHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            678899999999999999999999999999999999999999999999999974 5555667777764  3445553

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=93.94  E-value=0.037  Score=57.56  Aligned_cols=26  Identities=35%  Similarity=0.505  Sum_probs=23.4

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      ++.++.|+||+|||||||-..|+...
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHC
Confidence            56799999999999999999999764

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.92  E-value=0.023  Score=53.68  Aligned_cols=24  Identities=38%  Similarity=0.412  Sum_probs=21.1

Q ss_pred             CeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         62 NQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        62 Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .=-++|+|++|+|||||++.+.+.
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            346899999999999999999864

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=93.92  E-value=0.023  Score=53.03  Aligned_cols=23  Identities=30%  Similarity=0.416  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      -++|+|++|+|||||++.+.+..
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            48899999999999999998753

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=93.92  E-value=0.02  Score=53.97  Aligned_cols=22  Identities=41%  Similarity=0.531  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.+.+.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4799999999999999999875

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=93.90  E-value=0.027  Score=54.03  Aligned_cols=22  Identities=23%  Similarity=0.326  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .++|.|++||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEK   23 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999999753

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=93.89  E-value=0.023  Score=57.08  Aligned_cols=23  Identities=43%  Similarity=0.631  Sum_probs=21.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++|+|++|+|||||+|.|.|..
T Consensus        28 ~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHHCCC
Confidence            68999999999999999999964

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=93.89  E-value=0.024  Score=53.33  Aligned_cols=24  Identities=33%  Similarity=0.379  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      =-++|+|++|+|||||++.+.+..
T Consensus        29 ~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           29 YKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC
Confidence            467999999999999999998753

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=93.87  E-value=0.026  Score=51.79  Aligned_cols=21  Identities=43%  Similarity=0.425  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      .++|+|++|+|||||++.+.+
T Consensus         8 ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            478999999999999999984

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=93.80  E-value=0.028  Score=53.68  Aligned_cols=22  Identities=36%  Similarity=0.607  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .++|+|++|+|||||++.+.+.
T Consensus        36 ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4889999999999999999874

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=93.78  E-value=0.019  Score=52.79  Aligned_cols=22  Identities=32%  Similarity=0.469  Sum_probs=9.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.+.+.
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4799999999999999998764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=93.77  E-value=0.023  Score=54.12  Aligned_cols=22  Identities=27%  Similarity=0.519  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.+.+.
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4799999999999999998764

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=93.77  E-value=0.032  Score=59.67  Aligned_cols=26  Identities=27%  Similarity=0.455  Sum_probs=22.9

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .+.+++.|+|++||||||+.+.|+..
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            45789999999999999999999753

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=93.76  E-value=0.031  Score=55.18  Aligned_cols=26  Identities=35%  Similarity=0.501  Sum_probs=23.5

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      +|.++.+.|++||||||+.+.|+..+
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l   51 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETL   51 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            68899999999999999999998653

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=93.75  E-value=0.027  Score=52.87  Aligned_cols=24  Identities=29%  Similarity=0.319  Sum_probs=20.8

Q ss_pred             CeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         62 NQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        62 Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .=-++|+|++|+|||||++.+.+-
T Consensus        29 ~~ki~v~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           29 QMRILMVGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhC
Confidence            345899999999999999999764

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=93.71  E-value=0.02  Score=52.41  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++++|++|+|||||++.+.+.
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999874

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=93.69  E-value=0.024  Score=53.72  Aligned_cols=22  Identities=32%  Similarity=0.487  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.+.+.
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999999875

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=93.68  E-value=0.03  Score=51.37  Aligned_cols=27  Identities=19%  Similarity=0.332  Sum_probs=22.7

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      ..+..+.|.||+|+|||||++.++...
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            346678999999999999999998753

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=93.66  E-value=0.028  Score=52.40  Aligned_cols=22  Identities=41%  Similarity=0.477  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.+.+.
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHhC
Confidence            4789999999999999998764

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=93.63  E-value=0.037  Score=58.10  Aligned_cols=74  Identities=26%  Similarity=0.515  Sum_probs=63.4

Q ss_pred             HHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH-HHHhhhc--CCcEEEE
Q psy13765        125 IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS-IALELIN--NPRVMFL  198 (606)
Q Consensus       125 v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~-IA~aL~~--~P~lllL  198 (606)
                      ++++++.+||.+..++++.+|||||||||+|||||+.+|+++++|||+++|+...|+++. ....+..  +-.+++.
T Consensus       119 v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~v  195 (359)
T 3fvq_A          119 IEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFV  195 (359)
T ss_dssp             HHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            678999999999999999999999999999999999999999999999999998888874 4444443  3445554

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=93.63  E-value=0.031  Score=52.46  Aligned_cols=23  Identities=35%  Similarity=0.364  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      -++|+|++|+|||||++.+.+..
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~~~   44 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFHKM   44 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            48899999999999999998853

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=93.62  E-value=0.033  Score=54.79  Aligned_cols=74  Identities=30%  Similarity=0.481  Sum_probs=61.1

Q ss_pred             HHHHHHHcCCccc-cCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCc-hhhhHHHHHHhhhc--CCcEEEE
Q psy13765        125 IENVMSLLGLDES-QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPN-DQKKRLSIALELIN--NPRVMFL  198 (606)
Q Consensus       125 v~~~l~~~gl~~~-~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~-g~~krl~IA~aL~~--~P~lllL  198 (606)
                      +.++++.+|+.+. .++++.+|||||||||+||++|+.+|+++++|||+++|+. .+++-..+.+.+..  +-.+++.
T Consensus       125 ~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~v  202 (235)
T 3tif_A          125 ALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVV  202 (235)
T ss_dssp             HHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred             HHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence            4678888999875 4899999999999999999999999999999999999996 45555667777765  3455553

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=93.62  E-value=0.035  Score=55.73  Aligned_cols=74  Identities=27%  Similarity=0.389  Sum_probs=62.9

Q ss_pred             HHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhc------CCcccccCCCCCCCCchhh-hHHHHHHhhhcCC--cE
Q psy13765        125 IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELIN------NPRVMFLDEPTTSNPNDQK-KRLSIALELINNP--RV  195 (606)
Q Consensus       125 v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~------~~~~~~~de~~~~~s~g~~-krl~IA~aL~~~P--~l  195 (606)
                      ++++++.+|+.+..++++.+|||||||||+||++|+.      +|+++++|||+++|+...+ +-..+-+.+..+-  .+
T Consensus       122 ~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tv  201 (266)
T 4g1u_C          122 LQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAV  201 (266)
T ss_dssp             HHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEE
T ss_pred             HHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEE
Confidence            6788999999999999999999999999999999999      9999999999999997554 4556777776553  34


Q ss_pred             EEE
Q psy13765        196 MFL  198 (606)
Q Consensus       196 llL  198 (606)
                      ++.
T Consensus       202 i~v  204 (266)
T 4g1u_C          202 CCV  204 (266)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=93.61  E-value=0.028  Score=53.33  Aligned_cols=23  Identities=22%  Similarity=0.255  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++|+|++|+|||||++.+.+..
T Consensus         9 ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            9 AVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998643

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=93.60  E-value=0.031  Score=55.58  Aligned_cols=23  Identities=35%  Similarity=0.625  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++|+|++|+|||||+|.|.|..
T Consensus        38 ~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           38 TVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999999864

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=93.55  E-value=0.036  Score=53.94  Aligned_cols=28  Identities=25%  Similarity=0.301  Sum_probs=24.7

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGYRS   87 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~~   87 (606)
                      ++|.++.+.|++||||||+.+.|+..+.
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~   30 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQ   30 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4689999999999999999999987543

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=93.55  E-value=0.043  Score=53.71  Aligned_cols=26  Identities=31%  Similarity=0.630  Sum_probs=23.5

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .+|.++.+.|++||||||+.+.|+..
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~   44 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEY   44 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999999764

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=93.55  E-value=0.042  Score=56.62  Aligned_cols=24  Identities=33%  Similarity=0.594  Sum_probs=21.7

Q ss_pred             CeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         62 NQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        62 Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +.+++|+||+|||||||...|+..
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHh
Confidence            568999999999999999999865

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=93.53  E-value=0.036  Score=57.69  Aligned_cols=24  Identities=33%  Similarity=0.454  Sum_probs=21.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .+++|.||+|||||||.+.|+...
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l   31 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKF   31 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHc
Confidence            489999999999999999998753

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=93.53  E-value=0.026  Score=53.76  Aligned_cols=22  Identities=36%  Similarity=0.572  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.+.+.
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4889999999999999999875

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=93.52  E-value=0.037  Score=53.68  Aligned_cols=26  Identities=31%  Similarity=0.420  Sum_probs=23.3

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      +|.++.+.|++||||||+.+.|+..+
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l   27 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETL   27 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            48899999999999999999998654

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=93.50  E-value=0.039  Score=53.96  Aligned_cols=26  Identities=23%  Similarity=0.379  Sum_probs=23.0

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      +|.+++|-|+.||||||+.+.|+..+
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence            36789999999999999999998754

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=93.48  E-value=0.033  Score=55.63  Aligned_cols=23  Identities=43%  Similarity=0.689  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++++|++|+|||||+|.|.|..
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999999854

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=93.46  E-value=0.04  Score=53.17  Aligned_cols=22  Identities=32%  Similarity=0.750  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .++|+|++|+|||||++.+.|.
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999974

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=93.42  E-value=0.044  Score=59.40  Aligned_cols=34  Identities=26%  Similarity=0.427  Sum_probs=28.1

Q ss_pred             cceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        51 iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +++.+ ..+-+|+..+|+||||+|||||++.|++.
T Consensus       141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~  174 (473)
T 1sky_E          141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHN  174 (473)
T ss_dssp             HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred             HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhh
Confidence            44444 45668999999999999999999999764

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=93.39  E-value=0.019  Score=54.77  Aligned_cols=22  Identities=23%  Similarity=0.490  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.|.+.
T Consensus        13 ki~vvG~~~~GKSsli~~l~~~   34 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLDG   34 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999864

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=93.37  E-value=0.029  Score=52.89  Aligned_cols=22  Identities=36%  Similarity=0.501  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.+.+.
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999874

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=93.35  E-value=0.043  Score=58.04  Aligned_cols=74  Identities=24%  Similarity=0.462  Sum_probs=62.8

Q ss_pred             HHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH-HHHHhhhc--CCcEEEE
Q psy13765        125 IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL-SIALELIN--NPRVMFL  198 (606)
Q Consensus       125 v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl-~IA~aL~~--~P~lllL  198 (606)
                      ++++++.+||.+..++++.+|||||||||+|||||+.+|+++++|||+++|+.-.|+++ .+.+.+..  +-.+++.
T Consensus       114 v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~v  190 (381)
T 3rlf_A          114 VNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV  190 (381)
T ss_dssp             HHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred             HHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            67899999999999999999999999999999999999999999999999998765554 45566654  3455554

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=93.34  E-value=0.029  Score=55.69  Aligned_cols=28  Identities=29%  Similarity=0.343  Sum_probs=23.6

Q ss_pred             EeCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         59 FPSNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .+++.+++|.|+.||||||+.+.|+..+
T Consensus        21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           21 GTRIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             --CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence            3578899999999999999999998654

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=93.33  E-value=0.038  Score=52.92  Aligned_cols=24  Identities=33%  Similarity=0.465  Sum_probs=21.4

Q ss_pred             CeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         62 NQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        62 Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +.+++|+|++||||||+.+.|+..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~   26 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASE   26 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            457899999999999999999874

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=93.28  E-value=0.027  Score=52.31  Aligned_cols=24  Identities=29%  Similarity=0.313  Sum_probs=20.6

Q ss_pred             CeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         62 NQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        62 Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .=-++|+|++|+|||||++.+.+-
T Consensus        22 ~~~i~v~G~~~~GKssli~~l~~~   45 (189)
T 2x77_A           22 KIRVLMLGLDNAGKTSILYRLHLG   45 (189)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            345899999999999999999653

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=93.24  E-value=0.0064  Score=58.89  Aligned_cols=39  Identities=15%  Similarity=0.077  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhh
Q psy13765        148 GQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL  189 (606)
Q Consensus       148 GqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL  189 (606)
                      |||||++||++|+.+|+++++|||+++   .+++-..+.+.+
T Consensus       108 Gq~qrv~lAraL~~~p~lllLDEPts~---~~~~l~~~l~~l  146 (208)
T 3b85_A          108 VEVAPLAYMRGRTLNDAFVILDEAQNT---TPAQMKMFLTRL  146 (208)
T ss_dssp             EEEEEGGGGTTCCBCSEEEEECSGGGC---CHHHHHHHHTTB
T ss_pred             chHHHHHHHHHHhcCCCEEEEeCCccc---cHHHHHHHHHHh
Confidence            999999999999999999999999998   666666666666

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=93.19  E-value=1.5  Score=48.27  Aligned_cols=23  Identities=22%  Similarity=0.371  Sum_probs=21.2

Q ss_pred             CeEEEEECCCCCCHHHHHHHHhC
Q psy13765         62 NQLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        62 Ge~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ..+++|.|+.|.|||||.+.++.
T Consensus       152 ~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          152 SFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHH
Confidence            47999999999999999999984

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=93.19  E-value=0.033  Score=51.89  Aligned_cols=22  Identities=23%  Similarity=0.344  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.+.+.
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999864

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=93.15  E-value=0.048  Score=56.36  Aligned_cols=24  Identities=38%  Similarity=0.535  Sum_probs=21.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++.|+||+|||||||-+.|+...
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            478999999999999999998753

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=93.14  E-value=0.048  Score=52.57  Aligned_cols=22  Identities=32%  Similarity=0.634  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++.|+||+||||+|.-+.|+..
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4679999999999999999864

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=93.13  E-value=0.02  Score=53.79  Aligned_cols=22  Identities=27%  Similarity=0.578  Sum_probs=4.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.+.+.
T Consensus        22 ~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           22 KVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEC-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5889999999999999999875

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=93.02  E-value=0.046  Score=54.71  Aligned_cols=25  Identities=32%  Similarity=0.605  Sum_probs=22.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCCCC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGYRS   87 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~~~   87 (606)
                      ..++++|.+|+|||||+|.|.|...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~  124 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRA  124 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccc
Confidence            3789999999999999999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	606
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	7e-30
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	1e-29
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	4e-29
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	2e-28
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	1e-27
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	2e-27
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	2e-25
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	2e-25
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	3e-25
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	1e-24
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	2e-24
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	3e-24
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	4e-24
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	9e-24
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	1e-20
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	1e-19
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	2e-19
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	7e-19
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	9e-19
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	2e-17
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	1e-10
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	2e-09
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	2e-08
d1yrba1	244	c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09	4e-05
d1w1wa_	427	c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac	9e-05
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	1e-04
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	9e-04
d1nlfa_	274	c.37.1.11 (A:) Hexameric replicative helicase repA	0.001
d1pzna2	254	c.37.1.11 (A:96-349) DNA repair protein Rad51, cat	0.002
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	0.002
d2fnaa2	283	c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfo	0.003
d1jwyb_	306	c.37.1.8 (B:) Dynamin G domain {Dictyostelium disc	0.004
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	0.004
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	0.004

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score =  116 bits (291), Expect = 7e-30
 Identities = 57/244 (23%), Positives = 107/244 (43%), Gaps = 25/244 (10%)

Query: 28  EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
            I    +++       +      +LK++       + +A +G SG GKS+L++++  +  
Sbjct: 16  RIDIDHVSFQ------YNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD 69

Query: 88  NGVTGQILTNGH---SRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQ 144
              +GQIL +GH        + R     +QQD+ L      EN++  LG   + +    +
Sbjct: 70  V-TSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENIL--LGRPTATDEEVVE 126

Query: 145 LSGGQKKRLSIALELINNPRVMFLDEPTTSNPND----QKKRLSIALELINNPRVMFLDE 200
            +     +++ A + I N      D             QK+RLSIA   +NNP ++ LDE
Sbjct: 127 AA-----KMANAHDFIMN-LPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDE 180

Query: 201 PTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260
            T+ LD +S S   + L ++  + RT +   H+ S       D++ ++  G  +  G   
Sbjct: 181 ATSALDLESESIIQEALDVL-SKDRTTLIVAHRLST--ITHADKIVVIENGHIVETGTHR 237

Query: 261 QLVN 264
           +L+ 
Sbjct: 238 ELIA 241

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (289), Expect = 1e-29
 Identities = 50/242 (20%), Positives = 100/242 (41%), Gaps = 17/242 (7%)

Query: 28  EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YR 86
            ++F+D+++         +    VL+ L       ++ A++GP+G+GKS++  +L   Y+
Sbjct: 11  LVQFQDVSFAYPN-----RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 65

Query: 87  SNGVTGQILTNGH---SRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSS 143
             G   Q+L +G            R    + Q+ ++      EN+   L    +    ++
Sbjct: 66  PTGG--QLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITA 123

Query: 144 QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTT 203
                 K      +  +       +DE  +     Q++ +++A  LI  P V+ LD+ T+
Sbjct: 124 AA---VKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATS 180

Query: 204 GLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
            LD+ S  Q  +LL    ++  R+++      S    +  D +  L GG     G   QL
Sbjct: 181 ALDANSQLQVEQLLYESPERYSRSVLLITQHLSL--VEQADHILFLEGGAIREGGTHQQL 238

Query: 263 VN 264
           + 
Sbjct: 239 ME 240

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score =  114 bits (286), Expect = 4e-29
 Identities = 52/267 (19%), Positives = 105/267 (39%), Gaps = 70/267 (26%)

Query: 28  EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
           +++F+++T+T      +       L+N+  + P+ + +A++G SG+GKS++  +++ +  
Sbjct: 13  DLEFRNVTFT------YPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD 66

Query: 88  NGVTGQILTNGH---SRNINAFRRVSCYIQQDDRLQPLLTIENVMSLL------------ 132
               G IL +GH      + + R     + Q+  L       N+                
Sbjct: 67  I-DEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEA 125

Query: 133 ---------------GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPN 177
                          GLD         LSGGQ++R++IA       R             
Sbjct: 126 ARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA-------RA------------ 166

Query: 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSAT 237
                      L+ +  ++ LDE T+ LD++S       L  + Q+ RT +   H+ S  
Sbjct: 167 -----------LLRDSPILILDEATSALDTESERAIQAALDEL-QKNRTSLVIAHRLSTI 214

Query: 238 LFQMFDQVYLLSGGQCLYQGATDQLVN 264
             +  D++ ++  G  + +G   +L+ 
Sbjct: 215 --EQADEIVVVEDGIIVERGTHSELLA 239

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  112 bits (281), Expect = 2e-28
 Identities = 51/265 (19%), Positives = 98/265 (36%), Gaps = 41/265 (15%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHSRNINAFR 107
             VLKN+       +++AI G +G+GK+SLL ++ G   ++   G I  +G         
Sbjct: 49  NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE--GIIKHSG--------- 97

Query: 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-- 165
           RVS +  Q   + P    EN++  +  DE +            K   +  ++        
Sbjct: 98  RVS-FCSQFSWIMPGTIKENIIFGVSYDEYRYKS-------VVKACQLQQDITKFAEQDN 149

Query: 166 MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGR 225
             L E   +    Q+ R+S+A  +  +  +  LD P   LD  +  Q  +         +
Sbjct: 150 TVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANK 209

Query: 226 TIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIE 285
           T I    +      +  D++ +L  G   + G   +L +         P +         
Sbjct: 210 TRILVTSKMEH--LRKADKILILHQGSSYFYGTFSELQS-------LRPDF--------- 251

Query: 286 LASGEYGVDNINAMVEQAQNDVKPD 310
            +S   G D  +   E+ ++ +  +
Sbjct: 252 -SSKLMGYDTFDQFTEERRSSILTE 275

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score =  109 bits (274), Expect = 1e-27
 Identities = 58/243 (23%), Positives = 102/243 (41%), Gaps = 25/243 (10%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRS 87
           +  + + +            + +L+++      N +IA  GPSG GKS++  +L   Y+ 
Sbjct: 2   LSARHVDFAYDDS-------EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP 54

Query: 88  NGVTGQILTNGH---SRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQ 144
               G+I  +G    + ++  +R    ++ QD  +      EN+   L  D +       
Sbjct: 55  TA--GEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLW-- 110

Query: 145 LSGGQKKRLSIALELINNPRVMFLDEPTTSNPN---DQKKRLSIALELINNPRVMFLDEP 201
               Q   L+ A   + N       E           Q++RL+IA   + NP+++ LDE 
Sbjct: 111 ----QVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEA 166

Query: 202 TTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ 261
           T  LDS+S S   K L  +  +GRT +   H+ S       D++Y +  GQ    G  ++
Sbjct: 167 TASLDSESESMVQKALDSL-MKGRTTLVIAHRLST--IVDADKIYFIEKGQITGSGKHNE 223

Query: 262 LVN 264
           LV 
Sbjct: 224 LVA 226

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score =  108 bits (271), Expect = 2e-27
 Identities = 53/256 (20%), Positives = 98/256 (38%), Gaps = 58/256 (22%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           ++ +D+  +              L  L G   + +++ ++GP+GAGKS+LL  ++G  S 
Sbjct: 4   MQLQDVAEST------------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG 51

Query: 89  GVTGQILTNGH---SRNINAFRRVSCYIQQDDRLQPLLTI-----------------ENV 128
              G I   G    + +         Y+ Q         +                  +V
Sbjct: 52  --KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDV 109

Query: 129 MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALE 188
              L LD+     ++QLSGG+ +R+ +A  ++                            
Sbjct: 110 AGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPA------------------- 150

Query: 189 LINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL 248
                +++ LDEP   LD    S   K+L  + QQG  I+ + H  + TL +   + +LL
Sbjct: 151 ----GQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTL-RHAHRAWLL 205

Query: 249 SGGQCLYQGATDQLVN 264
            GG+ L  G  ++++ 
Sbjct: 206 KGGKMLASGRREEVLT 221

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  102 bits (256), Expect = 2e-25
 Identities = 61/262 (23%), Positives = 112/262 (42%), Gaps = 69/262 (26%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG--YR 86
           IK K++T T   G    +E    LKN+       + ++IMGPSG+GKS++L+++      
Sbjct: 2   IKLKNVTKTYKMG----EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP 57

Query: 87  SNG---VTGQILTNGHSRNINAFRRVSC-YIQQDDRLQPLLTI-ENV------------- 128
           + G   +      +     +   RR    ++ Q   L PLLT  ENV             
Sbjct: 58  TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMS 117

Query: 129 -----------MSLLGL-DESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNP 176
                      + +  L +   N + +QLSGGQ+                          
Sbjct: 118 GEERRKRALECLKMAELEERFANHKPNQLSGGQQ-------------------------- 151

Query: 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPS 235
               +R++IA  L NNP ++  D+PT  LDS++  + ++LLK ++++ G+T++   H  +
Sbjct: 152 ----QRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207

Query: 236 ATLFQMFDQVYLLSGGQCLYQG 257
             + +  +++  L  G+   + 
Sbjct: 208 --VARFGERIIYLKDGEVEREE 227

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  103 bits (257), Expect = 2e-25
 Identities = 39/227 (17%), Positives = 86/227 (37%), Gaps = 11/227 (4%)

Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNIN----AF 106
            L  +        +  I+GP+G+GKS+L++V++G+      G++               +
Sbjct: 19  ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD-EGRVYFENKDITNKEPAELY 77

Query: 107 RRVSCYIQQDDRLQPLLTI-ENVMSLLGLDESQNTRSSQLSGGQKKRLSI---ALELINN 162
                   Q  +    +T+ EN++            S        K   +   A +++  
Sbjct: 78  HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 137

Query: 163 PRV-MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMIS 221
            ++    D         Q K + I   L+ NP+++ +DEP  G+           +  + 
Sbjct: 138 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 197

Query: 222 QQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSS 268
            +G T +   H+    +    D +Y++  GQ + +G  ++ +  + S
Sbjct: 198 AKGITFLIIEHRLD-IVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLS 243

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score =  102 bits (256), Expect = 3e-25
 Identities = 58/267 (21%), Positives = 110/267 (41%), Gaps = 71/267 (26%)

Query: 28  EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YR 86
           +I F+++ +       +K +   +L N+       ++I I+G SG+GKS+L  ++   Y 
Sbjct: 1   DITFRNIRFR------YKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 54

Query: 87  SNGVTGQILTNGH---SRNINAFRRVSCYIQQDDRLQPLLTIENVMSLL----------- 132
                 Q+L +GH     + N  RR    + QD+ L     I+N+               
Sbjct: 55  PENG--QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYA 112

Query: 133 ---------------GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPN 177
                          G +     + + LSGG                             
Sbjct: 113 AKLAGAHDFISELREGYNTIVGEQGAGLSGG----------------------------- 143

Query: 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSAT 237
            Q++R++IA  L+NNP+++  DE T+ LD +S    ++ +  I  +GRT+I   H+ S  
Sbjct: 144 -QRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-CKGRTVIIIAHRLSTV 201

Query: 238 LFQMFDQVYLLSGGQCLYQGATDQLVN 264
             +  D++ ++  G+ + QG   +L++
Sbjct: 202 --KNADRIIVMEKGKIVEQGKHKELLS 226

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  101 bits (252), Expect = 1e-24
 Identities = 47/244 (19%), Positives = 99/244 (40%), Gaps = 28/244 (11%)

Query: 27  IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR 86
           +E+K ++LT                +  L       + + ++GPSG GK++ L +++G  
Sbjct: 5   VEVKLENLTKRFGN--------FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 56

Query: 87  SNGVTGQILTNGHSRN-INAFRRVSCYIQQDDRLQPLLTI-ENV---MSLLGLDESQNTR 141
                G+I         +    R    + Q   + P +T+ EN+   + +    + +   
Sbjct: 57  EP-TEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDE--- 112

Query: 142 SSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP 201
                    KR+  A EL+       L+         Q++R+++A  ++  P V+ +DEP
Sbjct: 113 -------IDKRVRWAAELLQIEE--LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEP 163

Query: 202 TTGLDSQSCSQCIKLLKMI-SQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260
            + LD++        +K +  +   T I   H     +  M D++ +++ GQ L  G+  
Sbjct: 164 LSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAM-TMGDRIAVMNRGQLLQIGSPT 222

Query: 261 QLVN 264
           ++  
Sbjct: 223 EVYL 226

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score =  100 bits (250), Expect = 2e-24
 Identities = 41/218 (18%), Positives = 94/218 (43%), Gaps = 14/218 (6%)

Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG----YRSNGVTGQILTNGHSRNINAF 106
            +K +  + P  Q++ ++G +GAGK++ L  ++G     +   +           ++   
Sbjct: 21  AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80

Query: 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM 166
             ++   +       L   EN+M            + +   G K+ L     L    +  
Sbjct: 81  MGIALVPEGRRIFPELTVYENLMMGA--------YNRKDKEGIKRDLEWIFSLFPRLKE- 131

Query: 167 FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRT 226
            L +   +    +++ L+I   L++ P+++ +DEP+ GL     S+  ++++ I+Q+G T
Sbjct: 132 RLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTT 191

Query: 227 IICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
           I+         L ++    Y+L  GQ + +G   +L++
Sbjct: 192 ILLVEQNALGAL-KVAHYGYVLETGQIVLEGKASELLD 228

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 99.7 bits (248), Expect = 3e-24
 Identities = 49/225 (21%), Positives = 103/225 (45%), Gaps = 12/225 (5%)

Query: 49  KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHSRNINAFR 107
           K++LK +       ++  ++GP+GAGK++ L ++S   + +     +         +  R
Sbjct: 15  KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVR 74

Query: 108 RVSCYIQQDDRLQPLLT-IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM 166
           ++  Y+ ++      +  IE +  + G   S ++         ++ +  A E+       
Sbjct: 75  KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSE-------IEEMVERATEIAGLGE-- 125

Query: 167 FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRT 226
            + +  ++      ++L IA  L+ NPR+  LDEPT+GLD  +  +  K+LK  SQ+G T
Sbjct: 126 KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 185

Query: 227 IICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNL 271
           I+ + H        + D++ L+  G  +  G  ++L     + N+
Sbjct: 186 ILVSSHNMLEVE-FLCDRIALIHNGTIVETGTVEELKERYKAQNI 229

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 99.2 bits (247), Expect = 4e-24
 Identities = 67/264 (25%), Positives = 111/264 (42%), Gaps = 63/264 (23%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR-- 86
           IK  ++T     G    Q     L N+    P+ Q+  ++G SGAGKS+L+  ++     
Sbjct: 2   IKLSNITKVFHQGTRTIQ----ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP 57

Query: 87  SNG---VTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTI-ENV-------------- 128
           + G   V GQ LT      +   RR    I Q   L    T+  NV              
Sbjct: 58  TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEV 117

Query: 129 -------MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKK 181
                  +SL+GL +  ++  S LSGGQK+R++IA  L +NP+V+               
Sbjct: 118 KRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLC------------- 164

Query: 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQ 240
                            DE T+ LD  +    ++LLK I+++ G TI+   H+    + +
Sbjct: 165 -----------------DEATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKR 206

Query: 241 MFDQVYLLSGGQCLYQGATDQLVN 264
           + D V ++S G+ + Q    ++ +
Sbjct: 207 ICDCVAVISNGELIEQDTVSEVFS 230

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 98.8 bits (246), Expect = 9e-24
 Identities = 49/280 (17%), Positives = 104/280 (37%), Gaps = 46/280 (16%)

Query: 28  EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
           ++   DL               +VLK +  +  +  +I+I+G SG+GKS+ L  ++    
Sbjct: 2   KLHVIDLHKRYGG--------HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK 53

Query: 88  NGVTGQILTNGHS----------------RNINAFRRVSCYIQQDDRLQPLLTIENVMSL 131
               G I+ NG +                  +   R     + Q   L   +T+   +  
Sbjct: 54  P-SEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME 112

Query: 132 LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELIN 191
             +     ++        ++R    L  +         +        Q++R+SIA  L  
Sbjct: 113 APIQVLGLSKHDA-----RERALKYLAKVGIDE-RAQGKYPVHLSGGQQQRVSIARALAM 166

Query: 192 NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGG 251
            P V+  DEPT+ LD +   + +++++ ++++G+T++   H+       +   V  L  G
Sbjct: 167 EPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQG 225

Query: 252 QCLYQGATDQLVNYLSSVNLPCPKYHNPAD-FVIELASGE 290
           +   +G  +Q+             + NP    + +   G 
Sbjct: 226 KIEEEGDPEQV-------------FGNPQSPRLQQFLKGS 252

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 88.1 bits (218), Expect = 1e-20
 Identities = 38/205 (18%), Positives = 84/205 (40%), Gaps = 23/205 (11%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           ++ +DL+             K VL+ +        ++   GP+G GK++LL  +S Y   
Sbjct: 3   LEIRDLS---------VGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP 53

Query: 89  GVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG 148
            + G+I+ NG    I   +    ++ ++  +   +++E+ +  +                
Sbjct: 54  -LKGEIIYNG--VPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN------- 103

Query: 149 QKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQ 208
            K  +  ALE +    V+ L +          +R+ +A  L+ N  +  LD+P   +D  
Sbjct: 104 -KNEIMDALESVE---VLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDED 159

Query: 209 SCSQCIKLLKMISQQGRTIICTIHQ 233
           S  + +K +  I ++   +I +  +
Sbjct: 160 SKHKVLKSILEILKEKGIVIISSRE 184

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 85.8 bits (212), Expect = 1e-19
 Identities = 54/255 (21%), Positives = 101/255 (39%), Gaps = 33/255 (12%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           ++ +++T        + +    V K++       + +  +GPSG GKS+LL +++G  + 
Sbjct: 1   VQLQNVTKA------WGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI 52

Query: 89  GVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLL-TIENVMSLLGLDESQNTRSSQLSG 147
                 +      +     R    + Q   L P L   EN+    GL  +   +      
Sbjct: 53  TSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMS--FGLKLAGAKKEVI--- 107

Query: 148 GQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDS 207
              +R++   E++       LD    +    Q++R++I   L+  P V  LDEP + LD+
Sbjct: 108 --NQRVNQVAEVLQLAH--LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 163

Query: 208 QSCSQCIKLL-KMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYL 266
               Q    + ++  + GRT+I   H        + D++ +L  G+    G   +L    
Sbjct: 164 ALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLEL---- 218

Query: 267 SSVNLPCPKYHNPAD 281
                    YH PAD
Sbjct: 219 ---------YHYPAD 224

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 85.5 bits (211), Expect = 2e-19
 Identities = 42/238 (17%), Positives = 106/238 (44%), Gaps = 24/238 (10%)

Query: 29  IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
           I+ + L+         ++     L NL  +  S +   I+GP+GAGK+  L++++G+   
Sbjct: 2   IEIESLS---------RKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP 52

Query: 89  GVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTI-ENVMSLLGLDESQNTRSSQLSG 147
                +L      +++  +    ++ Q+  L P + + +N+   + + + ++        
Sbjct: 53  DSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD-------- 104

Query: 148 GQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDS 207
              KR+      +       LD    +    +++R+++A  L+ NP+++ LDEP + LD 
Sbjct: 105 --PKRVLDTARDLK--IEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP 160

Query: 208 QSCSQCIKLL-KMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
           ++     ++L  +  +   T++   H  +     M D++ ++  G+ +  G  +++  
Sbjct: 161 RTQENAREMLSVLHKKNKLTVLHITHDQTEAR-IMADRIAVVMDGKLIQVGKPEEIFE 217

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 83.8 bits (207), Expect = 7e-19
 Identities = 49/260 (18%), Positives = 95/260 (36%), Gaps = 73/260 (28%)

Query: 51  VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-----YRSNGVTGQILTNGHSR-NIN 104
            ++ +       + + ++GPSG GK++ L +++G          +  +++ +      + 
Sbjct: 18  AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVP 77

Query: 105 AFRRVSCYIQQDDRLQPLLT----------------------IENVMSLLGLDESQNTRS 142
              R    + Q   L P +T                      +  V  LLGL E  N + 
Sbjct: 78  PKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP 137

Query: 143 SQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPT 202
            +LSGGQ++R+++        R                        ++  P+V  +DEP 
Sbjct: 138 RELSGGQRQRVALG-------RA-----------------------IVRKPQVFLMDEPL 167

Query: 203 TGLDSQSCSQCIKLLKMI-SQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ 261
           + LD++   +    LK +  Q G T I   H        M D++ +++ G     G+ D+
Sbjct: 168 SNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGSPDE 226

Query: 262 LVNYLSSVNLPCPKYHNPAD 281
           +             Y  PA+
Sbjct: 227 V-------------YDKPAN 233

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 83.6 bits (206), Expect = 9e-19
 Identities = 61/268 (22%), Positives = 115/268 (42%), Gaps = 37/268 (13%)

Query: 27  IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-- 84
           + I  K+++        FK+     L N+     + +   I+GPSGAGK++ + +++G  
Sbjct: 2   VRIIVKNVSKV------FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD 55

Query: 85  YRSNG---VTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTI-ENVMSLLGLDESQNT 140
             S G      +++ +     +    R    + Q   L P LT  EN+   L   +    
Sbjct: 56  VPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE 115

Query: 141 RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDE 200
                    +KR+    ++++   V+       S    Q++R+++A  L+ +P ++ LDE
Sbjct: 116 E-------IRKRVEEVAKILDIHHVLNHFPRELS--GAQQQRVALARALVKDPSLLLLDE 166

Query: 201 PTTGLDSQSCSQCIKLLKMI-SQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259
           P + LD++       L+K + S+ G T++   H P A +F + D+V +L  G+ +  G  
Sbjct: 167 PFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKP 225

Query: 260 DQLVNYLSSVNLPCPKYHNPAD-FVIEL 286
           + L             Y NP    V  L
Sbjct: 226 EDL-------------YDNPVSIQVASL 240

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 80.1 bits (197), Expect = 2e-17
 Identities = 46/218 (21%), Positives = 95/218 (43%), Gaps = 24/218 (11%)

Query: 65  IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINAFRRVSCYIQQDDRLQPLL 123
             ++GP+GAGKS  L++++G       G++  NG     +   RR   ++ QD  L P L
Sbjct: 27  CVLLGPTGAGKSVFLELIAGIVKP-DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHL 85

Query: 124 TIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINN-PRVMFLDEPTTSNPNDQKKR 182
           ++            +N      +  + +R     E+         LD         +++R
Sbjct: 86  SVY-----------RNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQR 134

Query: 183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMI-SQQGRTIICTIHQPSATLFQM 241
           +++A  L+  PR++ LDEP + +D ++    ++ L+ +  +    I+   H        +
Sbjct: 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAA-ML 193

Query: 242 FDQVYLLSGGQCLYQGATDQLVN--------YLSSVNL 271
            D+V ++  G+ + +G   +L +        +LS+ NL
Sbjct: 194 ADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSARNL 231

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 58.8 bits (141), Expect = 1e-10
 Identities = 19/188 (10%), Positives = 43/188 (22%), Gaps = 34/188 (18%)

Query: 65  IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLT 124
           I I G  G GK++L+  +             T          R     I  + + +   +
Sbjct: 3   IIITGEPGVGKTTLVKKIVERLGKR-AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61

Query: 125 IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS 184
                  L      N +  +         +      +  +V+ +DE              
Sbjct: 62  KFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFS------ 115

Query: 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQ 244
                                          + +++      ++ TI         +  +
Sbjct: 116 -------------------------KKFRDLVRQIMHDPNVNVVATIPIRDV--HPLVKE 148

Query: 245 VYLLSGGQ 252
           +  L G  
Sbjct: 149 IRRLPGAV 156

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

 Score = 43.1 bits (100), Expect = 4e-05
 Identities = 25/175 (14%), Positives = 52/175 (29%), Gaps = 21/175 (12%)

Query: 65  IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTN-------GHSRNINAFRRVSCYIQQDD 117
           +  +G +G+GK++L      Y  +      +          +  +I+    V+      +
Sbjct: 3   VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 62

Query: 118 RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPN 177
              P   I                   L     + L+  L L      + +D P      
Sbjct: 63  GYGPNGAIVESYDR-------------LMEKFNEYLNKILRLEKENDYVLIDTPGQMETF 109

Query: 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQS-CSQCIKLLKMISQQGRTIICTI 231
              +     +E +  P V+++ +P         C      L +  + G T I  +
Sbjct: 110 LFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPAL 164

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.8 bits (99), Expect = 9e-05
 Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 2/64 (3%)

Query: 183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMF 242
           L  A+          LDE    LD  +  +    ++         I    + +  +F+  
Sbjct: 345 LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT--MFEKS 402

Query: 243 DQVY 246
           D + 
Sbjct: 403 DALV 406

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 53  KNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCY 112
           K+ CG       IAI+G    GKS+LL+ L G + +  + +  T  H             
Sbjct: 2   KSYCGF------IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQA 55

Query: 113 IQQDD 117
           I  D 
Sbjct: 56  IYVDT 60

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.8 bits (89), Expect = 9e-04
 Identities = 18/138 (13%), Positives = 39/138 (28%), Gaps = 12/138 (8%)

Query: 65  IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLT 124
           I I GP  +GK+SLL +L+                +    +   +  +         L  
Sbjct: 6   IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSD 65

Query: 125 ------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFL------DEPT 172
                       +  +D + + +    +      +    E      +  L      +  T
Sbjct: 66  YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 125

Query: 173 TSNPNDQKKRLSIALELI 190
              P+  K  L   ++ +
Sbjct: 126 ARPPSKIKDALESEIQKV 143

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 22/130 (16%), Positives = 38/130 (29%), Gaps = 4/130 (3%)

Query: 44  FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI 103
           F   P   L  +     +  + A++ P GAGKS L   L+   + G     +    +  +
Sbjct: 12  FAAAPPP-LDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPV 70

Query: 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDE---SQNTRSSQLSGGQKKRLSIALELI 160
                         RL  L    +      + +    Q    S  +    +         
Sbjct: 71  IYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAA 130

Query: 161 NNPRVMFLDE 170
              R+M LD 
Sbjct: 131 EGRRLMVLDT 140

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 38/240 (15%), Positives = 72/240 (30%), Gaps = 25/240 (10%)

Query: 20  SLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL 79
           +   AD    K   +   +STG       K + K L G   +  +  + G  G+GK+ L 
Sbjct: 1   TFMRADEYLKKRATIG-RISTGS------KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 53

Query: 80  DVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQN 139
                          +                +I  ++  +P   I  +    GLD  + 
Sbjct: 54  -----------HTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEV 101

Query: 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLD 199
                +   +    +  + L+        +   T  P     +L I   L ++ R  ++ 
Sbjct: 102 --LKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPV----KLLIVDSLTSHFRSEYIG 155

Query: 200 EPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259
                   Q  ++ +  L  ++      +   +Q  A     F       GG  L   AT
Sbjct: 156 RGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSAT 215

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 9/53 (16%), Positives = 16/53 (30%)

Query: 65  IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDD 117
           + I+G    GKS+L + L   +   V  +                  +   D 
Sbjct: 3   VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDT 55

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Length = 283

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 37.8 bits (86), Expect = 0.003
 Identities = 16/130 (12%), Positives = 37/130 (28%), Gaps = 11/130 (8%)

Query: 44  FKQEPKDVLKNLCGRF--------PSNQLIAIMGPSGAGKSSLLDVLS---GYRSNGVTG 92
           F   PKD  K+   R             +  ++G    GKSS++ +           +  
Sbjct: 3   FDTSPKDNRKDFFDREKEIEKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDL 62

Query: 93  QILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKR 152
           +     +  +   F             +    ++ + ++ G+    N      +   +  
Sbjct: 63  RKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLS 122

Query: 153 LSIALELINN 162
            +  LE    
Sbjct: 123 FANLLESFEQ 132

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} Length = 306

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 37.5 bits (86), Expect = 0.004
 Identities = 27/187 (14%), Positives = 60/187 (32%), Gaps = 16/187 (8%)

Query: 65  IAIMGPSGAGKSSLLDVLSGYR-----SNGVTGQILTNGHSRNINAFRRVSCYIQQDDRL 119
           I ++G   +GKSS+L+ + G       S  VT + L    +    A          +   
Sbjct: 27  IVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLH 86

Query: 120 QPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSI---------ALELINNPRVMFLDE 170
           +P     +   +         R +  + G   +             L L++ P +     
Sbjct: 87  KPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGI-TKVP 145

Query: 171 PTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICT 230
                 + +++   + +  I     + +   T      + S  ++L K +  +G+  I  
Sbjct: 146 VGDQPTDIEQQIRRMVMAYIKKQNAIIV-AVTPANTDLANSDALQLAKEVDPEGKRTIGV 204

Query: 231 IHQPSAT 237
           I +    
Sbjct: 205 ITKLDLM 211

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 65  IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQD 116
           +AI+G    GKS+LL+ L G +   ++ +  T                +  D
Sbjct: 8   VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVD 59

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 8/124 (6%)

Query: 61  SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQ 120
            + +  +MG SG+GKS++   ++               H R           +  DDR  
Sbjct: 5   DHHIYVLMGVSGSGKSAVASEVA--HQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKP 62

Query: 121 PLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQK 180
            L  + +    +      +      S  +K    +  E   N   ++L      + +  +
Sbjct: 63  WLQALNDAAFAMQRTNKVSLIVC--SALKKHYRDLLREGNPNLSFIYLK----GDFDVIE 116

Query: 181 KRLS 184
            RL 
Sbjct: 117 SRLK 120

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	606
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.85
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.7
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.62
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	99.4
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	99.16
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	98.75
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	98.26
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	98.19
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.58
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	97.46
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.39
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.15
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.07
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.06
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.04
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.96
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.91
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.9
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.87
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.71
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.7
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.69
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.67
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.66
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.63
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.6
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.58
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.58
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.56
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.54
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.53
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.47
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.42
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.38
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.37
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.26
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.26
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.24
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.21
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.2
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.17
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.17
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.14
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.13
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.12
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.1
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.06
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.04
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.0
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.98
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.98
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	95.98
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.96
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	95.89
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	95.89
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	95.88
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	95.87
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.85
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	95.84
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	95.83
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.82
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	95.79
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.78
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.76
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	95.69
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.67
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.65
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.58
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	95.55
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	95.55
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	95.53
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.52
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	95.51
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	95.51
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.51
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.45
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.37
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	95.35
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	95.31
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	95.3
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	95.27
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	95.27
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	95.25
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	95.24
d1g2912	240	Maltose transport protein MalK, N-terminal domain	95.19
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	95.17
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	95.15
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	95.13
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.12
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.05
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.01
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	94.98
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.96
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	94.96
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	94.94
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	94.9
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	94.87
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	94.82
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	94.76
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	94.72
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	94.68
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.65
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	94.59
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	94.59
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.55
d2awna2	232	Maltose transport protein MalK, N-terminal domain	94.49
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	94.49
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.46
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.44
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.35
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	94.34
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	94.33
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	94.29
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	94.26
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.24
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	94.2
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	94.18
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	94.17
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	94.15
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.12
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	94.1
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	94.06
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	94.04
d1okkd2	207	GTPase domain of the signal recognition particle r	94.03
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.01
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	93.95
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	93.92
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	93.82
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	93.8
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	93.79
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	93.79
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	93.78
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	93.77
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.74
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	93.73
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	93.62
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	93.56
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	93.53
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	93.53
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	93.51
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	93.51
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	93.48
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	93.47
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	93.47
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	93.47
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	93.47
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	93.41
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	93.4
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	93.38
d1ls1a2	207	GTPase domain of the signal sequence recognition p	93.36
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	93.34
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.23
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	93.22
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	93.17
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	93.1
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	93.1
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	93.1
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	93.09
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	93.08
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	93.07
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	93.05
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	93.01
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	92.98
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	92.9
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	92.85
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	92.84
d1vmaa2	213	GTPase domain of the signal recognition particle r	92.71
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	92.69
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	92.66
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	92.65
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	92.58
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	92.48
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	92.47
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	92.41
d1j8yf2	211	GTPase domain of the signal sequence recognition p	92.37
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	92.37
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	92.35
d2qy9a2	211	GTPase domain of the signal recognition particle r	92.33
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	92.26
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	92.23
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	92.18
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	92.14
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	92.09
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	92.02
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	91.98
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	91.93
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	91.9
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	91.84
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	91.84
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	91.83
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	91.8
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	91.8
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	91.74
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	91.73
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	91.68
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	91.67
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	91.65
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	91.59
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	91.53
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	91.37
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	91.32
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.31
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	91.26
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	90.98
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	90.96
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	90.92
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	90.91
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	90.66
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	90.46
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	90.25
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	90.23
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	90.15
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	89.62
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	89.52
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	89.28
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	89.24
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	89.17
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	89.14
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	88.83
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	88.54
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	88.43
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	88.41
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	88.1
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	88.03
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	87.86
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	86.82
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	86.53
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	86.29
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	85.61
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	85.26
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	84.0
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	83.59
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	82.6
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	82.58
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	82.15
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	81.92
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	81.65
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	80.98

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=3.2e-51  Score=406.68  Aligned_cols=219  Identities=21%  Similarity=0.355  Sum_probs=180.3

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hh
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NA  105 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~  105 (606)
                      ..|+++||+++|        +++.+|+||||+|++||+++|+||||||||||+|+|+|+.+| .+|+|.+||++... ..
T Consensus         5 ~~I~v~nlsk~y--------g~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p-~sG~I~i~g~~i~~~~~   75 (239)
T d1v43a3           5 VEVKLENLTKRF--------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP-TEGRIYFGDRDVTYLPP   75 (239)
T ss_dssp             CCEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEETTEECTTSCG
T ss_pred             CeEEEEEEEEEE--------CCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCC-CCCEEEEcceecccCCc
Confidence            358999999997        457899999999999999999999999999999999999887 59999999997642 34


Q ss_pred             hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHH-HHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQK-KRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS  184 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqr-qRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~  184 (606)
                      .++.+|||||++.++|.+||.+.+... +      ...++|..+. +|+.-+.+.+.-.+  .+|.++..|||||||||+
T Consensus        76 ~~r~ig~v~Q~~~l~~~ltv~enl~~~-~------~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~LSGGq~QRva  146 (239)
T d1v43a3          76 KDRNISMVFQSYAVWPHMTVYENIAFP-L------KIKKFPKDEIDKRVRWAAELLQIEE--LLNRYPAQLSGGQRQRVA  146 (239)
T ss_dssp             GGGTEEEEEC------CCCHHHHHHTT-C------C--CCCHHHHHHHHHHHHHHTTCGG--GTTSCTTTCCSSCHHHHH
T ss_pred             ccceEEEEeechhhcccchHHHHHHHH-H------HHcCCCHHHHHHHHHHHHHHcCChh--hhcCChhhCCHHHHHHHH
Confidence            467899999999999999998766532 1      1224565554 44444444443322  688899999999999999


Q ss_pred             HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765        185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                      |||||+.+|++|+|||||+|||+.++.++.++|++++++ |+|||++|||+. ++.++|||+++|++|++++.|+++++.
T Consensus       147 iAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~G~iv~~G~~~el~  225 (239)
T d1v43a3         147 VARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEVY  225 (239)
T ss_dssp             HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            999999999999999999999999999999999999765 999999999987 578999999999999999999999985


Q ss_pred             H
Q psy13765        264 N  264 (606)
Q Consensus       264 ~  264 (606)
                      +
T Consensus       226 ~  226 (239)
T d1v43a3         226 L  226 (239)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.6e-51  Score=407.49  Aligned_cols=217  Identities=23%  Similarity=0.367  Sum_probs=153.3

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhhc
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAFR  107 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~~  107 (606)
                      |+++||+++|        +++++|+||||+|++||+++|+||||||||||+|+|+|+.+| .+|+|.+||++... +..+
T Consensus         1 Iev~nv~k~y--------g~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p-~sG~I~i~g~~i~~~~~~~   71 (232)
T d2awna2           1 VQLQNVTKAW--------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI-TSGDLFIGEKRMNDTPPAE   71 (232)
T ss_dssp             EEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEESSSCCTTSCGGG
T ss_pred             CEEEEEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC-CCCEEEECCEECCCCchhh
Confidence            6899999997        457899999999999999999999999999999999999887 59999999987642 3446


Q ss_pred             ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHH
Q psy13765        108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIA  186 (606)
Q Consensus       108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA  186 (606)
                      +.+|||||++.+++.+||.+.+... +      ...+++.-+ ++|+.-..+.+.-.+  ..|.++..|||||||||+||
T Consensus        72 r~ig~v~Q~~~l~~~~tv~eni~~~-~------~~~~~~~~~~~~~v~~~l~~~~l~~--~~~~~~~~LSGGqkQRvaiA  142 (232)
T d2awna2          72 RGVGMVFQSYALYPHLSVAENMSFG-L------KLAGAKKEVINQRVNQVAEVLQLAH--LLDRKPKALSGGQRQRVAIG  142 (232)
T ss_dssp             TCEEEECSSCCC----------------------------CHHHHHHHHHHHHC-----------------------CHH
T ss_pred             ceeeeeccccccccchhHHHHHHHH-H------HHcCCCHHHHHHHHHHHHHhCCChh--hhhCChhhCCHHHHHHHHHH
Confidence            7899999999999999986655432 1      112233333 334433333332221  56777777888888888888


Q ss_pred             HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      |||+.+|++|+|||||+|||+.++.++++.|+++.+ .|+|||++|||+. ++.++|||+++|++|++++.|+++++.+
T Consensus       143 raL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~G~iv~~G~~~el~~  220 (232)
T d2awna2         143 RTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELYH  220 (232)
T ss_dssp             HHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence            888888999999999999999999999999999976 5999999999986 5789999999999999999999999865

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=9.1e-51  Score=403.98  Aligned_cols=218  Identities=19%  Similarity=0.333  Sum_probs=170.3

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----  103 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----  103 (606)
                      .|+++||+++|        +++.+|+||||++++||+++|+||||||||||+|+|+|+..| .+|+|.+||++...    
T Consensus         3 ~i~v~nl~k~y--------g~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p-~sG~I~~~g~~i~~~~~~   73 (240)
T d1g2912           3 GVRLVDVWKVF--------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP-SRGQIYIGDKLVADPEKG   73 (240)
T ss_dssp             EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC-SEEEEEETTEEEEEGGGT
T ss_pred             cEEEEeEEEEE--------CCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCC-CCCEEEECCEEecccchh
Confidence            58999999997        457899999999999999999999999999999999999887 59999999986421    


Q ss_pred             ---hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHH-HHHHHHHHHhcCCcccccCCCCCCCCchh
Q psy13765        104 ---NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQK-KRLSIALELINNPRVMFLDEPTTSNPNDQ  179 (606)
Q Consensus       104 ---~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqr-qRv~ia~~L~~~~~~~~~de~~~~~s~g~  179 (606)
                         ...++.+|||+|++.++|.+||.+.+....       ...+++..|+ +|+.-..+.+.-.+  ..|.++..|||||
T Consensus        74 ~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~-------~~~~~~~~e~~~~v~~~l~~~~l~~--~~~~~p~~LSGGq  144 (240)
T d1g2912          74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPL-------KLRKVPRQEIDQRVREVAELLGLTE--LLNRKPRELSGGQ  144 (240)
T ss_dssp             EECCGGGSSEEEECSCCCCCTTSCHHHHHHHHH-------HHTTCCHHHHHHHHHHHHHHHTCGG--GTTCCGGGSCHHH
T ss_pred             hhcccccccceecccchhhcchhhhhHhhhhhH-------HHcCCCHHHHHHHHHHHHHHcCChh--HhcCChhhCCHHH
Confidence               123577999999999999999844332210       0112233222 23333333332222  3455555555555


Q ss_pred             hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      ||||+|||||+.+|++|+|||||+|||+.++.++++.|++++++ |.|||++|||++ ++.++|||+++|++|++++.|+
T Consensus       145 kQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~G~iv~~G~  223 (240)
T d1g2912         145 RQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGS  223 (240)
T ss_dssp             HHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEEC
T ss_pred             HHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcC
Confidence            55555666666669999999999999999999999999999876 999999999987 5789999999999999999999


Q ss_pred             hhHHHH
Q psy13765        259 TDQLVN  264 (606)
Q Consensus       259 ~~~~~~  264 (606)
                      ++|+.+
T Consensus       224 ~~el~~  229 (240)
T d1g2912         224 PDEVYD  229 (240)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999864

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=5.1e-51  Score=405.59  Aligned_cols=220  Identities=23%  Similarity=0.387  Sum_probs=179.5

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-----
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-----  102 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~-----  102 (606)
                      .|+++||+++|+      +++..+|+|||++|++||+++|+||||||||||+++|+|+.+| .+|+|.++|++..     
T Consensus         3 ~i~v~nlsk~y~------~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p-~~G~I~~~g~~i~~~~~~   75 (242)
T d1oxxk2           3 RIIVKNVSKVFK------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP-STGELYFDDRLVASNGKL   75 (242)
T ss_dssp             CEEEEEEEEEEG------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC-SEEEEEETTEEEEETTEE
T ss_pred             EEEEEeEEEEEC------CCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCC-CCceEEECCEEeecCchh
Confidence            589999999984      3456899999999999999999999999999999999999887 5999999998642     


Q ss_pred             -hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhh
Q psy13765        103 -INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQK  180 (606)
Q Consensus       103 -~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~  180 (606)
                       ....|+.+|||||++.++|.+||.+.+.. ++.      ..+++..+ ++|+.-..+.+.-.  -.+|..+..||||||
T Consensus        76 ~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~-~l~------~~~~~~~~~~~~v~~~l~~~gL~--~~~~~~p~~LSGGqk  146 (242)
T d1oxxk2          76 IVPPEDRKIGMVFQTWALYPNLTAFENIAF-PLT------NMKMSKEEIRKRVEEVAKILDIH--HVLNHFPRELSGAQQ  146 (242)
T ss_dssp             SSCGGGSCEEEEETTSCCCTTSCHHHHHHG-GGT------TSSCCHHHHHHHHHHHHHHTTCG--GGTTSCGGGSCHHHH
T ss_pred             hcchhhccceEEeccccccccccHHHHhhh-hhH------hhcCCHHHHHHHHHHHHhhcChH--hhhhCChhhCCHHHH
Confidence             13346789999999999999999665543 221      11244444 34444333333221  156777777777777


Q ss_pred             hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765        181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT  259 (606)
Q Consensus       181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~  259 (606)
                      |||+|||||+.+|++||+||||+|||+.++.++++.|++++++ |.|+|++|||++ ++.++|||+++|++|++++.|++
T Consensus       147 QRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~G~iv~~g~~  225 (242)
T d1oxxk2         147 QRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKP  225 (242)
T ss_dssp             HHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECH
T ss_pred             hHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEEcCH
Confidence            7777888888889999999999999999999999999999765 999999999987 57799999999999999999999


Q ss_pred             hHHHH
Q psy13765        260 DQLVN  264 (606)
Q Consensus       260 ~~~~~  264 (606)
                      +++.+
T Consensus       226 ~el~~  230 (242)
T d1oxxk2         226 EDLYD  230 (242)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99865

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=1.2e-50  Score=400.12  Aligned_cols=214  Identities=21%  Similarity=0.403  Sum_probs=167.9

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhhc
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAFR  107 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~~  107 (606)
                      |+++||+++|.        + .+|+||||+|++||+++|+||||||||||+|+|+|+.+| .+|+|.++|++... ...+
T Consensus         2 i~v~nlsk~y~--------~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p-~sG~I~~~G~~i~~~~~~~   71 (229)
T d3d31a2           2 IEIESLSRKWK--------N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP-DSGRILLDGKDVTDLSPEK   71 (229)
T ss_dssp             EEEEEEEEECS--------S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC-SEEEEEETTEECTTSCHHH
T ss_pred             EEEEEEEEEeC--------C-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCC-CCCEEEEccEeccccchhH
Confidence            78999999972        2 489999999999999999999999999999999999887 59999999987643 3446


Q ss_pred             ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHH
Q psy13765        108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL  187 (606)
Q Consensus       108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~  187 (606)
                      +.+|||||++.++|.+||.+.+... +..      .+.+  .++|+.-+.+.+.-.  -.+|.++..|||||||||+|||
T Consensus        72 r~ig~v~Q~~~l~~~~tV~enl~~~-~~~------~~~~--~~~~~~~~l~~~~l~--~~~~~~~~~LSGG~~QRvaiAr  140 (229)
T d3d31a2          72 HDIAFVYQNYSLFPHMNVKKNLEFG-MRM------KKIK--DPKRVLDTARDLKIE--HLLDRNPLTLSGGEQQRVALAR  140 (229)
T ss_dssp             HTCEEECTTCCCCTTSCHHHHHHHH-HHH------HCCC--CHHHHHHHHHHTTCT--TTTTSCGGGSCHHHHHHHHHHH
T ss_pred             hcceeeccccccCccccHHHHHHHH-Hhh------cccc--HHHHHHHHHHHhcch--hhHhCChhhCCHHHhcchhhhh
Confidence            7899999999999999985544321 000      0000  022222222222111  1345555556666666666777


Q ss_pred             hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        188 ELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       188 aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      ||+++|++|||||||+|||+.++.++.++|+++++ .|.|||++|||+. ++.++|||+++|++|++++.|+++++.+
T Consensus       141 aL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~G~iv~~g~~~el~~  217 (229)
T d3d31a2         141 ALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEIFE  217 (229)
T ss_dssp             HTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred             hhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            77777999999999999999999999999999976 4999999999987 5789999999999999999999999863

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.3e-50  Score=402.78  Aligned_cols=219  Identities=27%  Similarity=0.390  Sum_probs=177.0

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---h--
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---I--  103 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~--  103 (606)
                      |+++||+++|..+    .+..++|+||||+|++||+++|+||||||||||+++|+|+.+| .+|+|.++|++..   .  
T Consensus         2 i~v~nlsk~y~~~----~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p-~sG~I~~~g~~i~~~~~~~   76 (240)
T d3dhwc1           2 IKLSNITKVFHQG----TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQELTTLSESE   76 (240)
T ss_dssp             EEEEEEEEEEECS----SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCC-SEEEEEETTEEECTTCHHH
T ss_pred             EEEEeEEEEeCCC----CeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccc-cCCceEEcCeEeeeCChhh
Confidence            7899999998643    2234689999999999999999999999999999999999887 5999999998752   2  


Q ss_pred             -hhhcccEEEEccCCCCCCCCcHHHHHHH-cCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhh
Q psy13765        104 -NAFRRVSCYIQQDDRLQPLLTIENVMSL-LGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQK  180 (606)
Q Consensus       104 -~~~~~~~~yv~Q~~~l~~~ltv~~~l~~-~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~  180 (606)
                       ..+|+.+|||||++.+++.+||.+.+.. +.        ..+++..+ ++|+.-+.+.+.-++  .+|.++..||||||
T Consensus        77 ~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~--------~~~~~~~~~~~~v~~~L~~vgL~~--~~~~~~~~LSGG~~  146 (240)
T d3dhwc1          77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLE--------LDNTPKDEVKRRVTELLSLVGLGD--KHDSYPSNLSGGQK  146 (240)
T ss_dssp             HHHHHHHEEECCSSCCCCTTSBHHHHHHHHHH--------TTTCCTTHHHHHHHHHHHHHSTTT--TTSSCBSCCCHHHH
T ss_pred             hhhhhccccccccccccCCCccHHHHHHHHHH--------HcCCCHHHHHHHHHHHHHHcCCch--hhhCChhhCCHHHH
Confidence             2456789999999999999998554332 11        11233333 344444444443322  35677777777777


Q ss_pred             hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765        181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT  259 (606)
Q Consensus       181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~  259 (606)
                      |||+|||||+.+|++||+||||+|||+.++.++++.|++++++ |.|||++|||+. ++.++|||+++|++|++++.|++
T Consensus       147 QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~G~iv~~G~~  225 (240)
T d3dhwc1         147 QRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQDTV  225 (240)
T ss_dssp             HHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEETTEEEEEEET
T ss_pred             HHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEECCH
Confidence            7777888888889999999999999999999999999999876 999999999987 57789999999999999999999


Q ss_pred             hHHH
Q psy13765        260 DQLV  263 (606)
Q Consensus       260 ~~~~  263 (606)
                      +++.
T Consensus       226 ~ei~  229 (240)
T d3dhwc1         226 SEVF  229 (240)
T ss_dssp             TTTT
T ss_pred             HHHH
Confidence            9874

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=6.8e-49  Score=391.58  Aligned_cols=210  Identities=27%  Similarity=0.430  Sum_probs=174.4

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--hhhh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--INAF  106 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--~~~~  106 (606)
                      |+++||+++|        +++++|+||||++++||++||+||||||||||+|+|+|+.+| .+|+|.++|++..  ....
T Consensus         3 I~v~nl~k~y--------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p-~~G~i~i~G~~i~~~~~~~   73 (238)
T d1vpla_           3 VVVKDLRKRI--------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP-SSGIVTVFGKNVVEEPHEV   73 (238)
T ss_dssp             EEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEETTEETTTCHHHH
T ss_pred             EEEEeEEEEE--------CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCCEEEECcEecccChHHH
Confidence            7899999997        567899999999999999999999999999999999999887 5999999998753  3466


Q ss_pred             cccEEEEccCCCCCCCCcHHHHH----------------------HHcCCccccCCccccCChHHHHHHHHHHHHhcCCc
Q psy13765        107 RRVSCYIQQDDRLQPLLTIENVM----------------------SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPR  164 (606)
Q Consensus       107 ~~~~~yv~Q~~~l~~~ltv~~~l----------------------~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~  164 (606)
                      ++.+|||||++.+++.+|+.+.+                      +.+++.+..++++++||||||||+           
T Consensus        74 ~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv-----------  142 (238)
T d1vpla_          74 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKL-----------  142 (238)
T ss_dssp             HTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHH-----------
T ss_pred             HhhEeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHH-----------
Confidence            78899999999999999984443                      334444444445555555555555           


Q ss_pred             ccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcce
Q psy13765        165 VMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQ  244 (606)
Q Consensus       165 ~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~  244 (606)
                                         +||+||+++|++|+|||||+|||+.++.++.+++++++++|+|||++||+++ ++..+|||
T Consensus       143 -------------------~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~dr  202 (238)
T d1vpla_         143 -------------------LIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDR  202 (238)
T ss_dssp             -------------------HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSE
T ss_pred             -------------------HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence                               5566666669999999999999999999999999999999999999999987 58899999


Q ss_pred             eeeecCCcEEEEcChhHHHHHHHhCCCCCCCCCChHHHHHHH
Q psy13765        245 VYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIEL  286 (606)
Q Consensus       245 v~~L~~G~~~~~G~~~~~~~~f~~~g~~~~~~~~~ad~~~~~  286 (606)
                      |++|++|++++.|+++++.+.+        ...+..+.+.++
T Consensus       203 v~vl~~G~iv~~g~~~el~~~~--------~~~~~~~~f~~~  236 (238)
T d1vpla_         203 IALIHNGTIVETGTVEELKERY--------KAQNIEEVFEEV  236 (238)
T ss_dssp             EEEEETTEEEEEEEHHHHHHHT--------TCSSHHHHHHHH
T ss_pred             EEEEECCEEEEEcCHHHHHhcc--------CCchHHHHHHHh
Confidence            9999999999999999997642        234555665554

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=2.8e-49  Score=391.19  Aligned_cols=218  Identities=27%  Similarity=0.437  Sum_probs=173.8

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INA  105 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~  105 (606)
                      |+++||+++|+.+    .....+|+||||+|++||+++|+|||||||||||++|+|+.+| .+|+|.++|++..   .++
T Consensus         2 I~i~nlsk~y~~~----~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p-~sG~I~~~g~~i~~~~~~~   76 (230)
T d1l2ta_           2 IKLKNVTKTYKMG----EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP-TEGEVYIDNIKTNDLDDDE   76 (230)
T ss_dssp             EEEEEEEEEEEET----TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEECTTCCHHH
T ss_pred             EEEEeEEEEeCCC----CeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCC-CcceeEECCEEcCcCChhh
Confidence            7899999998643    2234589999999999999999999999999999999999887 5999999998753   222


Q ss_pred             ---h-cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc--ccCCCCCCCCchh
Q psy13765        106 ---F-RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM--FLDEPTTSNPNDQ  179 (606)
Q Consensus       106 ---~-~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~--~~de~~~~~s~g~  179 (606)
                         + ++.+|||+|++.++|.+||.+.+.. ++.   .......+.-+++  .-+.+++...++.  +.|.++..|||||
T Consensus        77 ~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~-~~~---~~~~~~~~~~~~~--~~~~~~l~~~~L~~~~~~~~p~~LSGGq  150 (230)
T d1l2ta_          77 LTKIRRDKIGFVFQQFNLIPLLTALENVEL-PLI---FKYRGAMSGEERR--KRALECLKMAELEERFANHKPNQLSGGQ  150 (230)
T ss_dssp             HHHHHHHHEEEECTTCCCCTTSCHHHHHHH-HHH---TCCSSCCCHHHHH--HHHHHHHHHTTCCGGGTTCCGGGSCHHH
T ss_pred             cchhhcceEEEEecchhhCcCccHHHHHhH-HHH---HhccCCCCHHHHH--HHHHHHHHhhchhhhhhcCChhhCCHHH
Confidence               2 3569999999999999999655432 111   1112234444332  2233344333332  4677778889999


Q ss_pred             hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      ||||+|||||+++|++|+|||||+|||+.++.+++++|++++++ |+|||++|||++ .+ ++|||+++|++|++++.|+
T Consensus       151 kQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a-~~~drv~~m~~G~Iv~~g~  228 (230)
T d1l2ta_         151 QQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN-VA-RFGERIIYLKDGEVEREEK  228 (230)
T ss_dssp             HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH-HH-TTSSEEEEEETTEEEEEEE
T ss_pred             HHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH-HH-HhCCEEEEEECCEEEEecc
Confidence            99999999999999999999999999999999999999999875 999999999975 44 8999999999999999987


Q ss_pred             h
Q psy13765        259 T  259 (606)
Q Consensus       259 ~  259 (606)
                      +
T Consensus       229 ~  229 (230)
T d1l2ta_         229 L  229 (230)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=6.8e-49  Score=395.85  Aligned_cols=220  Identities=22%  Similarity=0.337  Sum_probs=177.4

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----  103 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----  103 (606)
                      .|+++||+++|        +++++|+||||+|++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...    
T Consensus         2 ~Lev~nl~k~y--------g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p-~~G~I~~~G~~i~~~~~~   72 (258)
T d1b0ua_           2 KLHVIDLHKRY--------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP-SEGAIIVNGQNINLVRDK   72 (258)
T ss_dssp             CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEETTEECCEEECT
T ss_pred             eEEEEEEEEEE--------CCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccC-CCCCEEECCEEeccCCcc
Confidence            48999999997        457899999999999999999999999999999999999877 59999999986531    


Q ss_pred             ------------hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCC
Q psy13765        104 ------------NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDE  170 (606)
Q Consensus       104 ------------~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de  170 (606)
                                  ...++.+|||||++.+++.+||.+.+....+.      ....+..+ ++|+.-+.+.+.-.+ ...|.
T Consensus        73 ~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~  145 (258)
T d1b0ua_          73 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ------VLGLSKHDARERALKYLAKVGIDE-RAQGK  145 (258)
T ss_dssp             TSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHH------TTCCCHHHHHHHHHHHHHHTTCCH-HHHTS
T ss_pred             chhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHH------hcCCCHHHHHHHHHHHHHHcCCch-hhhcc
Confidence                        23567899999999999999985544321110      11233333 233332222222211 13456


Q ss_pred             CCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765        171 PTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG  250 (606)
Q Consensus       171 ~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~  250 (606)
                      ++..|||||||||.|||||+.+|++|||||||+|||+.++.+++++|++++++|+|||++|||+. ++.++||||++|++
T Consensus       146 ~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri~vm~~  224 (258)
T d1b0ua_         146 YPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ  224 (258)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEET
T ss_pred             CcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHH-HHHHhCCEEEEEEC
Confidence            66778888888888888888889999999999999999999999999999999999999999987 57899999999999


Q ss_pred             CcEEEEcChhHHHH
Q psy13765        251 GQCLYQGATDQLVN  264 (606)
Q Consensus       251 G~~~~~G~~~~~~~  264 (606)
                      |++++.|+++++.+
T Consensus       225 G~iv~~g~~~ev~~  238 (258)
T d1b0ua_         225 GKIEEEGDPEQVFG  238 (258)
T ss_dssp             TEEEEEECHHHHHH
T ss_pred             CEEEEEcCHHHHHh
Confidence            99999999999865

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=7.1e-49  Score=392.11  Aligned_cols=219  Identities=22%  Similarity=0.396  Sum_probs=184.1

Q ss_pred             ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh--
Q psy13765         26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--  103 (606)
Q Consensus        26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--  103 (606)
                      .+.|+++||+++|        +++++|+||||+|++||+++|+||||||||||+|+|+|+.+| .+|+|.++|++...  
T Consensus         4 d~~Lev~~l~k~y--------g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p-~~G~I~~~G~~i~~~~   74 (240)
T d1ji0a_           4 DIVLEVQSLHVYY--------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA-QKGKIIFNGQDITNKP   74 (240)
T ss_dssp             SEEEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEECTTCC
T ss_pred             ceEEEEeeEEEEE--------CCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC-CccEEEeccccccccc
Confidence            3679999999997        567899999999999999999999999999999999999887 59999999987542  


Q ss_pred             -hhh-cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc-cccCCCCCCCCchhh
Q psy13765        104 -NAF-RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-MFLDEPTTSNPNDQK  180 (606)
Q Consensus       104 -~~~-~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~  180 (606)
                       ... |..++|+||+..+++.+||.+.+.......       .-..+.++++.-+.++..  .+ -..|.++..||||||
T Consensus        75 ~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~-------~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~LSGG~~  145 (240)
T d1ji0a_          75 AHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR-------KDKEGIKRDLEWIFSLFP--RLKERLKQLGGTLSGGEQ  145 (240)
T ss_dssp             HHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC-------CCSSHHHHHHHHHHHHCH--HHHTTTTSBSSSSCHHHH
T ss_pred             HHHHHHhcccccCcccccCCcccHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHhh--ChHHHHhCchhhCCHHHH
Confidence             222 345999999999999999977654322211       112344555544433321  11 157889999999999


Q ss_pred             hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765        181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD  260 (606)
Q Consensus       181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~  260 (606)
                      |||.|||||+++|++|+|||||+|||+.++.++.++|++++++|+|||++||+++ ++.++|||+++|++|++++.|+++
T Consensus       146 Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~G~iv~~g~~~  224 (240)
T d1ji0a_         146 QMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGKAS  224 (240)
T ss_dssp             HHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEEEHH
T ss_pred             HHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence            9999999999999999999999999999999999999999999999999999986 578999999999999999999999


Q ss_pred             HHH
Q psy13765        261 QLV  263 (606)
Q Consensus       261 ~~~  263 (606)
                      ++.
T Consensus       225 el~  227 (240)
T d1ji0a_         225 ELL  227 (240)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            985

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=3.8e-48  Score=390.29  Aligned_cols=227  Identities=15%  Similarity=0.280  Sum_probs=183.3

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~  104 (606)
                      .|+++||+++|        +++++|+||||++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++..   +.
T Consensus         4 iL~v~nlsk~y--------g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p-~~G~I~~~g~~i~~~~~~   74 (254)
T d1g6ha_           4 ILRTENIVKYF--------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA-DEGRVYFENKDITNKEPA   74 (254)
T ss_dssp             EEEEEEEEEEE--------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEECTTCCHH
T ss_pred             eEEEEEEEEEE--------CCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcC-CCcEEEECCEeccchhHH
Confidence            58999999997        457899999999999999999999999999999999999887 5999999998753   23


Q ss_pred             h-hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCC----ccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCch
Q psy13765        105 A-FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNT----RSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPND  178 (606)
Q Consensus       105 ~-~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~----~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g  178 (606)
                      + .++.++|+||++.+++.+||.+.+..-........    ........+++....|.+++....+- ..|.++..||||
T Consensus        75 ~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG  154 (254)
T d1g6ha_          75 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGG  154 (254)
T ss_dssp             HHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHH
T ss_pred             HHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcH
Confidence            3 34559999999999999999776643221111000    00001111223333444444433332 578899999999


Q ss_pred             hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      |||||.|||||+.+|++|+|||||+|||+.++.++.+.|++++++|+|||+++||++ ++.++||||++|++|++++.|+
T Consensus       155 ~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~vm~~G~iv~~g~  233 (254)
T d1g6ha_         155 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFNGQIIAEGR  233 (254)
T ss_dssp             HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhCCEEEEEeCCEEEEEec
Confidence            999999999999999999999999999999999999999999989999999999988 4779999999999999999999


Q ss_pred             hhHHHH
Q psy13765        259 TDQLVN  264 (606)
Q Consensus       259 ~~~~~~  264 (606)
                      ++|+..
T Consensus       234 ~~e~~~  239 (254)
T d1g6ha_         234 GEEEIK  239 (254)
T ss_dssp             SHHHHH
T ss_pred             HHHHhh
Confidence            988654

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-47  Score=383.41  Aligned_cols=224  Identities=21%  Similarity=0.358  Sum_probs=175.9

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Chh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NIN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~  104 (606)
                      .|+++||+|+|+.+     .++.+|+||||+|++||++||+||||||||||+++|+|+++| .+|+|.+||++.   +..
T Consensus        11 ~I~~~nvsf~Y~~~-----~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p-~~G~I~i~g~~i~~~~~~   84 (251)
T d1jj7a_          11 LVQFQDVSFAYPNR-----PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP-TGGQLLLDGKPLPQYEHR   84 (251)
T ss_dssp             CEEEEEEEECCTTS-----TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEEGGGBCHH
T ss_pred             eEEEEEEEEECCCC-----CCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCC-CcCEEEECCEecchhhhH
Confidence            59999999998532     345799999999999999999999999999999999999887 599999999865   446


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc--cccCCCCCCCCchhhhH
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV--MFLDEPTTSNPNDQKKR  182 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~--~~~de~~~~~s~g~~kr  182 (606)
                      .+|+.++||+|++.+++ .|+.+.+. +|+.......  .. -...++......+..-|+-  ..+++....||||||||
T Consensus        85 ~~r~~i~~v~Q~~~lf~-~tv~eni~-~g~~~~~~~~--~~-~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQR  159 (251)
T d1jj7a_          85 YLHRQVAAVGQEPQVFG-RSLQENIA-YGLTQKPTME--EI-TAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQA  159 (251)
T ss_dssp             HHHHHEEEECSSCCCCS-SBHHHHHH-CSCSSCCCHH--HH-HHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHH
T ss_pred             HHHHHhhhccccccccC-cchhhhhh-hhhcccchHH--HH-HHHHHHHHHHHHHHhccccchhhHhccCccCChhHceE
Confidence            77899999999999886 48866553 2332211100  00 0001111112222222222  14566667889999999


Q ss_pred             HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765        183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ  261 (606)
Q Consensus       183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~  261 (606)
                      |+|||||+++|+||+||||||+||+.++.++++.|+++.++ |+|+|++||+++ .+ +.||||++|++|++++.|++++
T Consensus       160 vaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~-~~-~~aDrI~vl~~G~iv~~Gt~~e  237 (251)
T d1jj7a_         160 VALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS-LV-EQADHILFLEGGAIREGGTHQQ  237 (251)
T ss_dssp             HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH-HH-HTCSEEEEEETTEEEEEECHHH
T ss_pred             EEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence            99999999999999999999999999999999999998764 899999999975 34 7799999999999999999999


Q ss_pred             HHH
Q psy13765        262 LVN  264 (606)
Q Consensus       262 ~~~  264 (606)
                      +++
T Consensus       238 Ll~  240 (251)
T d1jj7a_         238 LME  240 (251)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            975

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-46  Score=375.00  Aligned_cols=217  Identities=27%  Similarity=0.438  Sum_probs=173.2

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Chh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NIN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~  104 (606)
                      +|+++||+|+|+      .+.+.+|+||||+|++||.+||+||||||||||+++|+|+.+| .+|+|.+||++.   +..
T Consensus         1 eI~~~nvsf~Y~------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p-~~G~I~i~g~~i~~~~~~   73 (241)
T d2pmka1           1 DITFRNIRFRYK------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQVLIDGHDLALADPN   73 (241)
T ss_dssp             EEEEEEEEEESS------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEETTTSCHH
T ss_pred             CeEEEEEEEEeC------CCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCC-CCCEEEECCEEecccchh
Confidence            489999999974      2456799999999999999999999999999999999999887 599999999875   456


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHH---HHHHHHHHhc-CCccc--ccCCCCCCCCch
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKK---RLSIALELIN-NPRVM--FLDEPTTSNPND  178 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrq---Rv~ia~~L~~-~~~~~--~~de~~~~~s~g  178 (606)
                      .+|+.++||+|++.+++ .|+.+.+.. +...        .+.-+..   +.+-+.+.+. .|.-+  ..++....||||
T Consensus        74 ~lr~~i~~v~Q~~~lf~-~Ti~eNi~~-~~~~--------~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGG  143 (241)
T d2pmka1          74 WLRRQVGVVLQDNVLLN-RSIIDNISL-ANPG--------MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGG  143 (241)
T ss_dssp             HHHHHEEEECSSCCCTT-SBHHHHHCT-TSTT--------CCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHH
T ss_pred             hhhceEEEEecccccCC-ccccccccc-cCcc--------ccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHH
Confidence            78899999999999886 487655432 1111        1211111   1111122222 22211  345566778888


Q ss_pred             hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      |||||+|||||+++|+||+||||||+||+.++..+++.|+++.+ |+|+|++||+++. + +.||||++|++|++++.|+
T Consensus       144 q~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~-~-~~~D~i~vl~~G~Iv~~G~  220 (241)
T d2pmka1         144 QRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLST-V-KNADRIIVMEKGKIVEQGK  220 (241)
T ss_dssp             HHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGGG-G-TTSSEEEEEETTEEEEEEC
T ss_pred             HHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCHHH-H-HhCCEEEEEECCEEEEECC
Confidence            88888899999999999999999999999999999999999865 8999999999863 4 7899999999999999999


Q ss_pred             hhHHHH
Q psy13765        259 TDQLVN  264 (606)
Q Consensus       259 ~~~~~~  264 (606)
                      ++++++
T Consensus       221 ~~ell~  226 (241)
T d2pmka1         221 HKELLS  226 (241)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999875

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=1.5e-46  Score=372.57  Aligned_cols=196  Identities=22%  Similarity=0.405  Sum_probs=166.6

Q ss_pred             eeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhhcccEEEEccCCCCCCCCcHHHHHHHc
Q psy13765         54 NLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAFRRVSCYIQQDDRLQPLLTIENVMSLL  132 (606)
Q Consensus        54 ~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~  132 (606)
                      ||||+++ ||+++|+||||||||||+|+|+|+.+| .+|+|.+||++... ...++.+|||||++.++|.+||.|.+.. 
T Consensus        17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p-~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~-   93 (240)
T d2onka1          17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKP-DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY-   93 (240)
T ss_dssp             EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT-
T ss_pred             EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCC-CceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhh-
Confidence            8999995 689999999999999999999999887 59999999987642 3446789999999999999999776653 


Q ss_pred             CCccccCCccccCChHHH-HHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHH
Q psy13765        133 GLDESQNTRSSQLSGGQK-KRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSC  210 (606)
Q Consensus       133 gl~~~~~~~~~~lSgGqr-qRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~  210 (606)
                      ++.        ..+..++ +|+   .+++..-++- ++|..+..|||||||||+|||||+++|++|+|||||+|||+.++
T Consensus        94 ~l~--------~~~~~~~~~~v---~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~  162 (240)
T d2onka1          94 GLR--------NVERVERDRRV---REMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTK  162 (240)
T ss_dssp             TCT--------TSCHHHHHHHH---HHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHH
T ss_pred             hhc--------ccCHHHHHHHH---HHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHH
Confidence            442        2344443 334   4444444443 67888888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        211 SQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       211 ~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      ..+.+.+++++++ |.|||++|||+. ++.++|||+++|++|++++.|+++++.+
T Consensus       163 ~~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~G~ii~~G~~~el~~  216 (240)
T d2onka1         163 GVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELFS  216 (240)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEEecHHHHhc
Confidence            9999999999775 999999999987 5789999999999999999999999964

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=5.4e-46  Score=373.97  Aligned_cols=218  Identities=23%  Similarity=0.414  Sum_probs=170.2

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Chh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NIN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~  104 (606)
                      .|+++||+|+|+.      .++++|+||||+|++||++||+||||||||||+++|+|+.+| .+|+|.+||++.   +..
T Consensus        13 ~I~~~nvsf~Y~~------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p-~~G~I~i~g~~i~~~~~~   85 (253)
T d3b60a1          13 DLEFRNVTFTYPG------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI-DEGHILMDGHDLREYTLA   85 (253)
T ss_dssp             CEEEEEEEECSSS------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC-SEEEEEETTEETTTBCHH
T ss_pred             EEEEEEEEEEeCC------CCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCC-CccEEEECCcccchhhhh
Confidence            5999999999742      346799999999999999999999999999999999999887 599999999865   346


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHH---HHHHHhc-CCc-c-cccCCCCCCCCch
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLS---IALELIN-NPR-V-MFLDEPTTSNPND  178 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~---ia~~L~~-~~~-~-~~~de~~~~~s~g  178 (606)
                      .+++.++||+|++.++.....+++. . +..       ...+..+-.++.   -+..++. -|+ + -.+++....||||
T Consensus        86 ~~r~~i~~v~Q~~~l~~~ti~~n~~-~-~~~-------~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGG  156 (253)
T d3b60a1          86 SLRNQVALVSQNVHLFNDTVANNIA-Y-ART-------EEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGG  156 (253)
T ss_dssp             HHHHTEEEECSSCCCCSSBHHHHHH-T-TTT-------SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHH
T ss_pred             hhhheEEEEeeccccCCcchhhhhh-h-cCc-------ccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHH
Confidence            7888999999999988764444432 1 111       112221111111   0111111 121 1 1344555678888


Q ss_pred             hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      |||||+|||||+++|+||+||||||+||+.++..+++.|+++.+ ++|+|++||+++ .+ +.||+|++|++|++++.|+
T Consensus       157 qkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~-~~-~~~D~v~vl~~G~Iv~~G~  233 (253)
T d3b60a1         157 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS-TI-EQADEIVVVEDGIIVERGT  233 (253)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG-GT-TTCSEEEEEETTEEEEEEC
T ss_pred             HHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH-HH-HhCCEEEEEECCEEEEECC
Confidence            88888888888888999999999999999999999999999965 899999999986 34 7899999999999999999


Q ss_pred             hhHHHH
Q psy13765        259 TDQLVN  264 (606)
Q Consensus       259 ~~~~~~  264 (606)
                      ++++++
T Consensus       234 ~~eLl~  239 (253)
T d3b60a1         234 HSELLA  239 (253)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999876

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=7.1e-47  Score=378.03  Aligned_cols=216  Identities=26%  Similarity=0.481  Sum_probs=170.7

Q ss_pred             EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhh
Q psy13765         29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INA  105 (606)
Q Consensus        29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~  105 (606)
                      |++|||+|+|+       +.+++|+||||+|++||++||+||||||||||+++|+|+.+| .+|+|.+||++.+   .+.
T Consensus         2 le~knvsf~Y~-------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p-~~G~I~i~g~~i~~~~~~~   73 (242)
T d1mv5a_           2 LSARHVDFAYD-------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP-TAGEITIDGQPIDNISLEN   73 (242)
T ss_dssp             EEEEEEEECSS-------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC-SBSCEEETTEESTTTSCSC
T ss_pred             EEEEEEEEECC-------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCC-CCCEEEECCEEeccccHHH
Confidence            79999999974       335799999999999999999999999999999999999887 5999999998753   466


Q ss_pred             hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHH-HHH--HHHh-cCCccc--ccCCCCCCCCchh
Q psy13765        106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL-SIA--LELI-NNPRVM--FLDEPTTSNPNDQ  179 (606)
Q Consensus       106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv-~ia--~~L~-~~~~~~--~~de~~~~~s~g~  179 (606)
                      +|+.+|||+|++.+++. |+.+.+. +++...       .+..+..+. ..+  ...+ ..|+-+  ...+....|||||
T Consensus        74 ~r~~i~~v~Q~~~lf~~-ti~eNi~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGq  144 (242)
T d1mv5a_          74 WRSQIGFVSQDSAIMAG-TIRENLT-YGLEGD-------YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQ  144 (242)
T ss_dssp             CTTTCCEECCSSCCCCE-EHHHHTT-SCTTSC-------SCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHH
T ss_pred             HHhheEEEccccccCCc-chhhhee-cccccc-------cchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHH
Confidence            78899999999999886 7766442 222111       122221111 111  1111 111111  2344556788888


Q ss_pred             hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765        180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT  259 (606)
Q Consensus       180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~  259 (606)
                      ||||+|||||+++|+||+||||||+||+.++..+++.|++++ +|+|+|++||+++ .+ +.||||++|++|++++.|++
T Consensus       145 kQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~-~~-~~~D~i~vl~~G~iv~~G~~  221 (242)
T d1mv5a_         145 RQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEKGQITGSGKH  221 (242)
T ss_dssp             HHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEETTEECCCSCH
T ss_pred             HHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHH-HH-HhCCEEEEEECCEEEEECCH
Confidence            888889999999999999999999999999999999999997 4899999999986 34 67999999999999999999


Q ss_pred             hHHHH
Q psy13765        260 DQLVN  264 (606)
Q Consensus       260 ~~~~~  264 (606)
                      +|+++
T Consensus       222 ~eLl~  226 (242)
T d1mv5a_         222 NELVA  226 (242)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99885

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=6.1e-45  Score=366.00  Aligned_cols=217  Identities=27%  Similarity=0.413  Sum_probs=170.9

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Chh
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NIN  104 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~  104 (606)
                      .|+++||+|+|+.      ..+++|+|||++|++||++||+||||||||||+++|+|+..+ .+|+|.+||.+.   +..
T Consensus        16 ~I~~~nvsf~Y~~------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p-~~G~I~i~g~~i~~~~~~   88 (255)
T d2hyda1          16 RIDIDHVSFQYND------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV-TSGQILIDGHNIKDFLTG   88 (255)
T ss_dssp             CEEEEEEEECSCS------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC-SEEEEEETTEEGGGSCHH
T ss_pred             EEEEEEEEEEeCC------CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCc-cccccccCCEEcccCCHH
Confidence            6999999999753      346799999999999999999999999999999999999887 599999999864   456


Q ss_pred             hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHH---HHHHh-cCCccc--ccCCCCCCCCch
Q psy13765        105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSI---ALELI-NNPRVM--FLDEPTTSNPND  178 (606)
Q Consensus       105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~i---a~~L~-~~~~~~--~~de~~~~~s~g  178 (606)
                      .+|+.++||+|++.+++. |+.+.+. +|...        .+-.+..++.-   +.+.+ .-|+=+  .+++....||||
T Consensus        89 ~lr~~i~~v~Q~~~lf~~-Ti~eNi~-~g~~~--------~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgG  158 (255)
T d2hyda1          89 SLRNQIGLVQQDNILFSD-TVKENIL-LGRPT--------ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGG  158 (255)
T ss_dssp             HHHHTEEEECSSCCCCSS-BHHHHHG-GGCSS--------CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHH
T ss_pred             HhhheeeeeeccccCCCC-CHHHHHh-ccCcC--------CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHH
Confidence            788999999999998864 8755443 22211        12222222110   01111 112211  233444568888


Q ss_pred             hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      ||||++|||||+++|+||+||||||+||+.++..+++.|+++.+ ++|+|++||+++. + +.||||++|++|++++.|+
T Consensus       159 q~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~~-~-~~~D~ii~l~~G~iv~~G~  235 (255)
T d2hyda1         159 QKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLST-I-THADKIVVIENGHIVETGT  235 (255)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-T-TTCSEEEEEETTEEEEEEC
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEECC
Confidence            88888888888888999999999999999999999999999865 8999999999873 4 7899999999999999999


Q ss_pred             hhHHHH
Q psy13765        259 TDQLVN  264 (606)
Q Consensus       259 ~~~~~~  264 (606)
                      ++++.+
T Consensus       236 ~~eLl~  241 (255)
T d2hyda1         236 HRELIA  241 (255)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999875

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.6e-44  Score=354.45  Aligned_cols=194  Identities=28%  Similarity=0.486  Sum_probs=165.7

Q ss_pred             eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765         27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI  103 (606)
Q Consensus        27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~  103 (606)
                      +.++++||++            +.+|+||||+|++||++||+||||||||||+|+|+|+.+  .+|+|.++|++.   +.
T Consensus         2 ~il~~~dv~~------------~~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~--~~G~I~~~g~~i~~~~~   67 (231)
T d1l7vc_           2 IVMQLQDVAE------------STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GKGSIQFAGQPLEAWSA   67 (231)
T ss_dssp             EEEEEEEECC------------TTTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC--CSSEEEESSSBGGGSCH
T ss_pred             eEEEEECccc------------CceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CceEEEECCEECCcCCH
Confidence            5689999863            247999999999999999999999999999999999864  489999999864   33


Q ss_pred             hhhcccEEEEccCCCCCCCCcH-----------------HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhc-----
Q psy13765        104 NAFRRVSCYIQQDDRLQPLLTI-----------------ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELIN-----  161 (606)
Q Consensus       104 ~~~~~~~~yv~Q~~~l~~~ltv-----------------~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~-----  161 (606)
                      .+.+...+|++|+.......++                 +++++.+++.+..++++.+||||||||++||++|++     
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~  147 (231)
T d1l7vc_          68 TKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQA  147 (231)
T ss_dssp             HHHHHHEEEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTT
T ss_pred             HHHHhhceeeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCccc
Confidence            4556678999998876666665                 455566778777788888888888888887777765     


Q ss_pred             CCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh
Q psy13765        162 NPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQM  241 (606)
Q Consensus       162 ~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~  241 (606)
                      +|                            +|+||+|||||+|||+.++..+.+++++++++|+|||+++||++ ++.++
T Consensus       148 ~p----------------------------~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~  198 (231)
T d1l7vc_         148 NP----------------------------AGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRH  198 (231)
T ss_dssp             CT----------------------------TCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHH
T ss_pred             CC----------------------------CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHH
Confidence            22                            27999999999999999999999999999999999999999987 57899


Q ss_pred             cceeeeecCCcEEEEcChhHHH
Q psy13765        242 FDQVYLLSGGQCLYQGATDQLV  263 (606)
Q Consensus       242 ~D~v~~L~~G~~~~~G~~~~~~  263 (606)
                      |||+++|++|++++.|+++++.
T Consensus       199 ~dri~vl~~G~iv~~G~~~ev~  220 (231)
T d1l7vc_         199 AHRAWLLKGGKMLASGRREEVL  220 (231)
T ss_dssp             CSBCCBEETTEECCCSBHHHHS
T ss_pred             CCEEEEEECCEEEEECCHHHHh
Confidence            9999999999999999999874

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-41  Score=344.90  Aligned_cols=193  Identities=22%  Similarity=0.299  Sum_probs=152.0

Q ss_pred             ccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHH
Q psy13765         48 PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIEN  127 (606)
Q Consensus        48 ~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~  127 (606)
                      .+++|+|||++|++||++||+||||||||||+++|+|++++ .+|+|.++|          +++||+|++.+++. |+.+
T Consensus        48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p-~~G~I~~~g----------~i~~v~Q~~~l~~~-tv~e  115 (281)
T d1r0wa_          48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA-SEGIIKHSG----------RVSFCSQFSWIMPG-TIKE  115 (281)
T ss_dssp             TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC-SEEEEECCS----------CEEEECSSCCCCSE-EHHH
T ss_pred             CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcC-CCcEEEECC----------EEEEEeccccccCc-eeec
Confidence            46899999999999999999999999999999999999887 599999998          38999999999886 7755


Q ss_pred             HHHHcCCccccCCccccCChHHHHHH----HHHHHHhcCCccc--ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCC
Q psy13765        128 VMSLLGLDESQNTRSSQLSGGQKKRL----SIALELINNPRVM--FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP  201 (606)
Q Consensus       128 ~l~~~gl~~~~~~~~~~lSgGqrqRv----~ia~~L~~~~~~~--~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEP  201 (606)
                      .+. ++..         ......+.+    .+...+..-|+-.  .+++....|||||||||+|||||+++|+||+||||
T Consensus       116 ni~-~~~~---------~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEP  185 (281)
T d1r0wa_         116 NII-FGVS---------YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSP  185 (281)
T ss_dssp             HHT-TTSC---------CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESC
T ss_pred             ccc-cccc---------ccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCc
Confidence            442 2321         111111111    1122222222221  44566667899999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765        202 TTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN  264 (606)
Q Consensus       202 TsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~  264 (606)
                      |+|||+.+..++++.+.+...+|+|+|+++|+++ . .+.||||++|++|++++.|+++|+.+
T Consensus       186 ts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~-~-l~~aDrI~vl~~G~i~~~Gt~~eL~~  246 (281)
T d1r0wa_         186 FGYLDVFTEEQVFESCVCKLMANKTRILVTSKME-H-LRKADKILILHQGSSYFYGTFSELQS  246 (281)
T ss_dssp             CCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHH-H-HHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHhhCCCEEEEEechHH-H-HHhCCEEEEEECCEEEEECCHHHHhc
Confidence            9999999999998764444446899999999975 3 47899999999999999999999875

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=7.7e-40  Score=318.21  Aligned_cols=196  Identities=19%  Similarity=0.317  Sum_probs=154.4

Q ss_pred             EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhc
Q psy13765         28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR  107 (606)
Q Consensus        28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~  107 (606)
                      .|+++||++.|         ++++|+|||++|++||+++|+||||||||||+|+|+|+.+| .+|+|.+||++..  +.+
T Consensus         2 ~lev~~ls~~y---------~~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p-~~G~I~~~g~~i~--~~~   69 (200)
T d1sgwa_           2 KLEIRDLSVGY---------DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP-LKGEIIYNGVPIT--KVK   69 (200)
T ss_dssp             EEEEEEEEEES---------SSEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEETTEEGG--GGG
T ss_pred             eEEEEEEEEEe---------CCeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhccccc-CCCEEEECCEehh--Hhc
Confidence            58999999986         24699999999999999999999999999999999999887 5999999998763  567


Q ss_pred             ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHH
Q psy13765        108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL  187 (606)
Q Consensus       108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~  187 (606)
                      ..++|++|+..+++.+|+++.+.......  +   ...+   ++++.-+.+.+.-.+   ++++...||||||||++||+
T Consensus        70 ~~i~~~~~~~~~~~~~t~~~~l~~~~~~~--~---~~~~---~~~~~~~l~~~~~~~---~~~~~~~LSgG~~qrv~ia~  138 (200)
T d1sgwa_          70 GKIFFLPEEIIVPRKISVEDYLKAVASLY--G---VKVN---KNEIMDALESVEVLD---LKKKLGELSQGTIRRVQLAS  138 (200)
T ss_dssp             GGEEEECSSCCCCTTSBHHHHHHHHHHHT--T---CCCC---HHHHHHHHHHTTCCC---TTSBGGGSCHHHHHHHHHHH
T ss_pred             CcEEEEeecccCCCCcCHHHHHHHHHHhc--C---CccC---HHHHHHHHHHcCCcc---cccccCcCCCcHHHHHHHHH
Confidence            88999999999999999988876532110  0   0122   223333333332222   45677789999999999999


Q ss_pred             hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765        188 ELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG  250 (606)
Q Consensus       188 aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~  250 (606)
                      ||+.+|++++|||||+|||+.++..+++.|+++.+++.++|+++|+.-    .+||++..|++
T Consensus       139 al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l~~  197 (200)
T d1sgwa_         139 TLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENLHK  197 (200)
T ss_dssp             HTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEGGG
T ss_pred             HHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh----hhcchhhheee
Confidence            999999999999999999999999999999998775444444444421    57999999864

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.62  E-value=2.4e-17  Score=153.68  Aligned_cols=154  Identities=13%  Similarity=0.103  Sum_probs=93.5

Q ss_pred             EEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEcc-----CCCCCCCCcHHHHHHHcCCccccC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQ-----DDRLQPLLTIENVMSLLGLDESQN  139 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q-----~~~l~~~ltv~~~l~~~gl~~~~~  139 (606)
                      ++|+||||||||||+++|+|..++ ..|.+...+.+......  +.++..+     ...... .+.... ...+ ....+
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~-~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~-~~~~~   76 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGK-RAIGFWTEEVRDPETKK--RTGFRIITTEGKKKIFSS-KFFTSK-KLVG-SYGVN   76 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGG-GEEEEEEEEEC--------CCEEEEEETTCCEEEEEE-TTCCCS-SEET-TEEEC
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCC-CcceEEECCcchHHHHH--hhhhhhhhhhHHHHHHhh-hhhhhh-hhhh-hhhcC
Confidence            789999999999999999998776 47888887754322111  1121111     000000 000000 0000 00011


Q ss_pred             CccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy13765        140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKM  219 (606)
Q Consensus       140 ~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~  219 (606)
                      .....+|+|+++|.++++++..+                              |+++++|||+..  ........+.+.+
T Consensus        77 ~~~~~~~~~~~~~~~l~~~~~~~------------------------------~~vlllDE~~~~--~~~~~~~~~~l~~  124 (178)
T d1ye8a1          77 VQYFEELAIPILERAYREAKKDR------------------------------RKVIIIDEIGKM--ELFSKKFRDLVRQ  124 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCT------------------------------TCEEEECCCSTT--GGGCHHHHHHHHH
T ss_pred             cchhhhhhhhhHHHHHHHHHhcC------------------------------CCceeecCCCcc--chhhHHHHHHHHH
Confidence            11223577777777766555555                              999999998443  3344566666666


Q ss_pred             HHh-CCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765        220 ISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA  258 (606)
Q Consensus       220 l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~  258 (606)
                      +.+ .+.|+|+++|+..  ....+|++..+.+|+++.-++
T Consensus       125 ~l~~~~~~il~~~h~~~--~~~~~~~i~~~~~~~i~~v~~  162 (178)
T d1ye8a1         125 IMHDPNVNVVATIPIRD--VHPLVKEIRRLPGAVLIELTP  162 (178)
T ss_dssp             HHTCTTSEEEEECCSSC--CSHHHHHHHTCTTCEEEECCT
T ss_pred             HhccCCCEEEEEEccHH--HHHhhceEEEEeCCEEEEECC
Confidence            554 4899999999965  357899999999999986543

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.40  E-value=4.3e-13  Score=140.67  Aligned_cols=76  Identities=14%  Similarity=0.167  Sum_probs=63.4

Q ss_pred             CCCCCCchhhhHHHHHHhh----hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceee
Q psy13765        171 PTTSNPNDQKKRLSIALEL----INNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVY  246 (606)
Q Consensus       171 ~~~~~s~g~~krl~IA~aL----~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~  246 (606)
                      +...+|||||.++.+|..+    ..++++++||||+++||+..+..+.+.|++++..+.-+|+|||+|.  +.+.+|+++
T Consensus       329 ~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~--~~~~ad~~~  406 (427)
T d1w1wa_         329 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT--MFEKSDALV  406 (427)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH--HHTTCSEEE
T ss_pred             hhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHH--HHHhcccEE
Confidence            3455799999887766443    5677899999999999999999999999998766677999999975  678999987


Q ss_pred             ee
Q psy13765        247 LL  248 (606)
Q Consensus       247 ~L  248 (606)
                      .+
T Consensus       407 ~V  408 (427)
T d1w1wa_         407 GV  408 (427)
T ss_dssp             EE
T ss_pred             EE
Confidence            55

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.16  E-value=5.8e-11  Score=119.40  Aligned_cols=75  Identities=23%  Similarity=0.241  Sum_probs=58.5

Q ss_pred             CCCchhhhHHHHHHh----hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeee--
Q psy13765        174 SNPNDQKKRLSIALE----LINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYL--  247 (606)
Q Consensus       174 ~~s~g~~krl~IA~a----L~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~--  247 (606)
                      .+|.|||+.+.++..    ...+|+++++|||-++|||.....+.+.|++..+ +.-||+|||.|.  +.+.+|+++.  
T Consensus       219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~v~  295 (308)
T d1e69a_         219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHGVT  295 (308)
T ss_dssp             GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEEEE
T ss_pred             hhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhcccEEEEE
Confidence            345566555444332    4556899999999999999999999999998865 578999999986  4589999966  


Q ss_pred             ecCC
Q psy13765        248 LSGG  251 (606)
Q Consensus       248 L~~G  251 (606)
                      +.+|
T Consensus       296 ~~~g  299 (308)
T d1e69a_         296 MVNG  299 (308)
T ss_dssp             ESSS
T ss_pred             EeCC
Confidence            4556

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.26  E-value=4.6e-06  Score=79.99  Aligned_cols=42  Identities=14%  Similarity=0.162  Sum_probs=35.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCC
Q psy13765        193 PRVMFLDEPTTGLDSQSCSQCI-KLLKMISQQGRTIICTIHQP  234 (606)
Q Consensus       193 P~lllLDEPTsgLD~~~~~~i~-~~l~~l~~~g~tii~~~H~~  234 (606)
                      ..++++||+.+|=|+.....+. .+++.+.+.+..++++||..
T Consensus       115 ~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~  157 (224)
T d1ewqa2         115 NSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF  157 (224)
T ss_dssp             TEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH
T ss_pred             CcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeech
Confidence            7899999999999998887765 45666777788999999984

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=8.3e-06  Score=78.66  Aligned_cols=43  Identities=9%  Similarity=0.058  Sum_probs=34.9

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHH-HHHHHHhC-CCEEEEEecCCc
Q psy13765        193 PRVMFLDEPTTGLDSQSCSQCIK-LLKMISQQ-GRTIICTIHQPS  235 (606)
Q Consensus       193 P~lllLDEPTsgLD~~~~~~i~~-~l~~l~~~-g~tii~~~H~~~  235 (606)
                      ..++++||+.+|=|+.....+.. .++.+..+ +..++++||...
T Consensus       121 ~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~  165 (234)
T d1wb9a2         121 YSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE  165 (234)
T ss_dssp             TEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred             ccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHH
Confidence            78999999999999999988765 46677665 568888888754

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.58  E-value=3.8e-05  Score=74.89  Aligned_cols=35  Identities=17%  Similarity=0.182  Sum_probs=28.2

Q ss_pred             ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765         50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      +-|+++.+=+.+|+++.|.|++|+|||||+.-++-
T Consensus        23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            34555544489999999999999999999877763

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=0.00022  Score=68.99  Aligned_cols=44  Identities=25%  Similarity=0.313  Sum_probs=31.4

Q ss_pred             hcCCcEEEEeCCCC---C--CCHHHHHHHHHHHHHHHhC-CCEEEEEecC
Q psy13765        190 INNPRVMFLDEPTT---G--LDSQSCSQCIKLLKMISQQ-GRTIICTIHQ  233 (606)
Q Consensus       190 ~~~P~lllLDEPTs---g--LD~~~~~~i~~~l~~l~~~-g~tii~~~H~  233 (606)
                      ..+|+++++|--++   +  =|......+++.|++++++ |.+|+++.|.
T Consensus       130 ~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~  179 (274)
T d1nlfa_         130 AEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA  179 (274)
T ss_dssp             HTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred             ccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence            34589999995432   1  2556667788888888764 8899888774

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=6.1e-06  Score=75.24  Aligned_cols=33  Identities=18%  Similarity=0.186  Sum_probs=29.1

Q ss_pred             cceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765         51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        51 iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      -+++.++++.+| ++.|+|||||||||+|++|.-
T Consensus        14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred             CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence            467888888887 999999999999999999963

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.15  E-value=0.00012  Score=69.77  Aligned_cols=34  Identities=26%  Similarity=0.366  Sum_probs=25.2

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEE
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQIL   95 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~   95 (606)
                      +|+.++++|+||+|||||+|.|.|...- .+|+|.
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~-~T~~vs  127 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKL-RVSEVS  127 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCC-C-----
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhh-hccCcc
Confidence            5899999999999999999999986443 367765

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.00012  Score=64.88  Aligned_cols=22  Identities=41%  Similarity=0.492  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +++|+|++|||||||++.|...
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~   25 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPA   25 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7899999999999999999854

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.06  E-value=0.00013  Score=66.66  Aligned_cols=25  Identities=28%  Similarity=0.546  Sum_probs=22.8

Q ss_pred             CeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         62 NQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        62 Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      |+++.|+||||||||||.+.|....
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            8999999999999999999997653

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.04  E-value=0.00015  Score=64.67  Aligned_cols=26  Identities=23%  Similarity=0.557  Sum_probs=24.0

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .|+++.|.||+||||||+.+.|+...
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999998764

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.00019  Score=63.83  Aligned_cols=27  Identities=26%  Similarity=0.442  Sum_probs=24.3

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      +++.++.|+||+||||||+.+.|+..+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            578899999999999999999998753

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.91  E-value=0.00081  Score=63.40  Aligned_cols=28  Identities=29%  Similarity=0.534  Sum_probs=24.5

Q ss_pred             EEEeCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765         57 GRFPSNQLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      +=+++|+++.|.||+|+|||||..-++-
T Consensus        21 GGi~~gsl~li~G~pGsGKT~l~~qia~   48 (242)
T d1tf7a2          21 GGFFKDSIILATGATGTGKTLLVSRFVE   48 (242)
T ss_dssp             SSEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            3589999999999999999999876654

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.90  E-value=0.0014  Score=65.43  Aligned_cols=30  Identities=13%  Similarity=0.409  Sum_probs=26.2

Q ss_pred             EeCCeEEEEECCCCCCHHHHHHHHhCCCCC
Q psy13765         59 FPSNQLIAIMGPSGAGKSSLLDVLSGYRSN   88 (606)
Q Consensus        59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~   88 (606)
                      ++.|.-+.|.||.||||||||++|.+..++
T Consensus       163 v~~~~nili~G~tgSGKTT~l~al~~~i~~  192 (323)
T d1g6oa_         163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPK  192 (323)
T ss_dssp             HHHTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred             HHhCCCEEEEeeccccchHHHHHHhhhccc
Confidence            455667899999999999999999998765

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.87  E-value=0.00025  Score=63.13  Aligned_cols=27  Identities=19%  Similarity=0.174  Sum_probs=24.3

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      ++|.++.|+|++||||||+-+.|+-.+
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            479999999999999999999998653

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.71  E-value=0.00013  Score=69.58  Aligned_cols=34  Identities=35%  Similarity=0.419  Sum_probs=22.7

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEE
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQIL   95 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~   95 (606)
                      +|+.++++|+||+|||||+|.|.|-... .+|+|.
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~-~t~~vs  129 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGL-RTNEIS  129 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHh-hhcccc
Confidence            5788999999999999999999986433 367766

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.70  E-value=0.0021  Score=61.98  Aligned_cols=27  Identities=26%  Similarity=0.455  Sum_probs=22.0

Q ss_pred             EeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         59 FPSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +++..-+.+.||+|+|||++.+.|+..
T Consensus        42 ~~~~~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          42 GKIPKGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             -CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCCeEEeeCCCCCCccHHHHHHHHH
Confidence            334455789999999999999999964

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.69  E-value=0.00033  Score=62.46  Aligned_cols=24  Identities=33%  Similarity=0.526  Sum_probs=21.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      +.++|.||+|||||||.+.|+...
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999998753

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.0013  Score=63.85  Aligned_cols=28  Identities=29%  Similarity=0.617  Sum_probs=24.9

Q ss_pred             EEEeCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765         57 GRFPSNQLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      +=+++|.++-|.||+|+|||||.-.++.
T Consensus        49 GGi~~g~itei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          49 GGLPMGRIVEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCccCceEEEEecCCCcHHHHHHHHHHH
Confidence            6799999999999999999999866654

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.66  E-value=0.0022  Score=59.43  Aligned_cols=32  Identities=22%  Similarity=0.396  Sum_probs=25.7

Q ss_pred             cceee-eEEEeCCeEEEEECCCCCCHHHHHHHH
Q psy13765         51 VLKNL-CGRFPSNQLIAIMGPSGAGKSSLLDVL   82 (606)
Q Consensus        51 iL~~v-s~~i~~Ge~~aIiGpsGaGKSTLL~~L   82 (606)
                      -|+++ ++=+++|+++.|.|++|+|||||..-+
T Consensus        14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             THHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred             HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHH
Confidence            35553 345999999999999999999997543

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.63  E-value=0.00045  Score=61.72  Aligned_cols=24  Identities=17%  Similarity=0.350  Sum_probs=20.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      ++++|+|++|||||||++.|...+
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L   25 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAA   25 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHH
Confidence            478999999999999998877643

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.60  E-value=0.00053  Score=60.78  Aligned_cols=27  Identities=30%  Similarity=0.476  Sum_probs=23.6

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGYRS   87 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~~   87 (606)
                      ..+++.|.||+||||||+.+.|+....
T Consensus         2 ~~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           2 TTRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            357899999999999999999998653

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.58  E-value=0.00055  Score=60.78  Aligned_cols=26  Identities=31%  Similarity=0.575  Sum_probs=23.0

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++|-.++|.||+||||||+.+.|+-.
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            35678999999999999999999865

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.00053  Score=64.14  Aligned_cols=25  Identities=44%  Similarity=0.601  Sum_probs=22.6

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .|.++.|+||||+|||||.+.|.-.
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999999998754

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.56  E-value=0.00058  Score=59.45  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      +++.|.||+|||||||.+.|..
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5788999999999999998753

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.00046  Score=61.37  Aligned_cols=25  Identities=28%  Similarity=0.523  Sum_probs=21.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCCCC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGYRS   87 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~~~   87 (606)
                      +.+.|.||+|+|||||++.++..+.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~   26 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHH
Confidence            3588999999999999999998653

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.53  E-value=0.0041  Score=59.55  Aligned_cols=23  Identities=30%  Similarity=0.625  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      -+.+.||+|+|||+|.++|++..
T Consensus        44 giLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEecCCCCChhHHHHHHHHHc
Confidence            47899999999999999999753

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.47  E-value=0.00068  Score=59.68  Aligned_cols=24  Identities=38%  Similarity=0.560  Sum_probs=21.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++.|.||+||||||+.+.|+...
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            478999999999999999998753

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.42  E-value=0.00075  Score=60.20  Aligned_cols=25  Identities=16%  Similarity=0.359  Sum_probs=22.0

Q ss_pred             CeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         62 NQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        62 Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      +++++|.|++||||||+.+.|+-.+
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l   25 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNL   25 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            3689999999999999999998653

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.38  E-value=0.00066  Score=62.10  Aligned_cols=23  Identities=39%  Similarity=0.549  Sum_probs=20.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++|+|++|+|||||+|.|+|..
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~~   47 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCCCHHHHHHHhcCCC
Confidence            49999999999999999999863

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.37  E-value=0.00074  Score=59.65  Aligned_cols=21  Identities=33%  Similarity=0.528  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +.|+||+||||||+.+.|+-.
T Consensus         7 I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            579999999999999999854

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.26  E-value=0.0049  Score=59.77  Aligned_cols=29  Identities=28%  Similarity=0.570  Sum_probs=25.9

Q ss_pred             EEEeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         57 GRFPSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +=++.|.++-|-||+|+|||||.-.++..
T Consensus        52 GGip~g~itei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          52 GGIPRGRITEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCccCceEEEEecCCccchHHHHHHHHHH
Confidence            57999999999999999999999777654

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.26  E-value=0.00089  Score=60.53  Aligned_cols=22  Identities=36%  Similarity=0.490  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++||-||+|||||||.+.|+-.
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~   45 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQT   45 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999754

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.00099  Score=57.83  Aligned_cols=23  Identities=39%  Similarity=0.511  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .+.|+||+||||||+-+.|+-.+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            46788999999999999998754

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.00066  Score=61.47  Aligned_cols=26  Identities=31%  Similarity=0.415  Sum_probs=23.4

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .|-++.|+|++||||||+-+.|+-.+
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            68899999999999999999998643

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.20  E-value=0.00067  Score=61.44  Aligned_cols=21  Identities=38%  Similarity=0.624  Sum_probs=19.6

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +||+|++++|||||+|.|+|.
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999875

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.17  E-value=0.0013  Score=58.77  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++|+|++|+|||||+|.|+|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999853

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.17  E-value=0.004  Score=60.20  Aligned_cols=28  Identities=21%  Similarity=0.436  Sum_probs=23.6

Q ss_pred             EeCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         59 FPSNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      +++..-+.|.||+|+|||+|.+++++..
T Consensus        38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          38 MTPSKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence            4455568899999999999999999864

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.14  E-value=0.0012  Score=61.92  Aligned_cols=21  Identities=24%  Similarity=0.623  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      +++|+||.|||||||++.|..
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            689999999999999999974

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.13  E-value=0.0026  Score=60.09  Aligned_cols=51  Identities=12%  Similarity=0.173  Sum_probs=32.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhccee
Q psy13765        193 PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQV  245 (606)
Q Consensus       193 P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v  245 (606)
                      .+++++||.-. |.......+.+.+.+-. ....+|+++++++.....+-+|+
T Consensus       132 ~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~~i~~~l~sR~  182 (252)
T d1sxje2         132 YKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSPIIAPIKSQC  182 (252)
T ss_dssp             CEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCSSCHHHHTTS
T ss_pred             ceEEEeccccc-cccccchhhhccccccc-ccccceeeeccccchhhhhhcch
Confidence            67999999854 77777666666654322 24567899998764322333444

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0016  Score=59.02  Aligned_cols=28  Identities=18%  Similarity=0.387  Sum_probs=25.2

Q ss_pred             EEEeCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765         57 GRFPSNQLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      +=+++|+++.|.||+|+|||||..-++.
T Consensus        18 GGi~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          18 GGIETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             TSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            4699999999999999999999987764

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.10  E-value=0.0011  Score=59.69  Aligned_cols=23  Identities=39%  Similarity=0.563  Sum_probs=20.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++|+|++|+|||||+|.|.|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~   24 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKK   24 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999863

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.06  E-value=0.0014  Score=59.69  Aligned_cols=24  Identities=17%  Similarity=0.356  Sum_probs=21.3

Q ss_pred             CeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         62 NQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        62 Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ..++.|+||+||||||+.+.|+-.
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999853

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.04  E-value=0.0014  Score=59.83  Aligned_cols=21  Identities=57%  Similarity=0.787  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +.|+||||||||||.+.|+..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            689999999999999998764

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.00  E-value=0.0013  Score=60.31  Aligned_cols=23  Identities=43%  Similarity=0.652  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++|+|++|||||||+|.|.|-.
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998853

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.98  E-value=0.0063  Score=62.42  Aligned_cols=51  Identities=20%  Similarity=0.311  Sum_probs=36.1

Q ss_pred             hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeee
Q psy13765        188 ELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYL  247 (606)
Q Consensus       188 aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~  247 (606)
                      +|=+||++++..|..   |+.++...+    +.+..|..|+.|.|-.+.  ....+|+.-
T Consensus       223 ~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~a--~~~~~Rl~~  273 (401)
T d1p9ra_         223 ILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNTA--VGAVTRLRD  273 (401)
T ss_dssp             HGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSSS--HHHHHHHHH
T ss_pred             HHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEeccCch--Hhhhhhhhh
Confidence            333459999999976   555554444    456789999999998663  467777553

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.98  E-value=0.1  Score=50.06  Aligned_cols=24  Identities=21%  Similarity=0.362  Sum_probs=21.0

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      +..+++|.|+.|.|||||.+.+..
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            456999999999999999998753

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.98  E-value=0.0017  Score=57.98  Aligned_cols=22  Identities=50%  Similarity=0.748  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .++|+|.+|+|||||+|.|+|.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999985

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0018  Score=58.90  Aligned_cols=23  Identities=17%  Similarity=0.478  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +.+.|+||||+|||||++.|...
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999988753

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.89  E-value=0.0018  Score=58.31  Aligned_cols=22  Identities=32%  Similarity=0.552  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -+||+|++|+|||||+|.|+|.
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4799999999999999999985

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.89  E-value=0.0013  Score=59.29  Aligned_cols=21  Identities=38%  Similarity=0.600  Sum_probs=19.9

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +||+|++|+|||||+|.|+|.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999985

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.88  E-value=0.0014  Score=59.85  Aligned_cols=27  Identities=19%  Similarity=0.427  Sum_probs=24.0

Q ss_pred             EeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         59 FPSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++.+.++.|+||+||||||+.+.|+..
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            456789999999999999999999864

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.87  E-value=0.0014  Score=58.41  Aligned_cols=22  Identities=32%  Similarity=0.552  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.|.+-
T Consensus        15 kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4779999999999999999874

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.85  E-value=0.0016  Score=56.50  Aligned_cols=22  Identities=32%  Similarity=0.537  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.|.+-
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3579999999999999999875

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.84  E-value=0.0022  Score=58.52  Aligned_cols=26  Identities=27%  Similarity=0.372  Sum_probs=22.4

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      +-.++.|+||+||||||+.+.|+..+
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            34579999999999999999998753

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.83  E-value=0.0022  Score=57.63  Aligned_cols=23  Identities=43%  Similarity=0.748  Sum_probs=21.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++|+|++|+|||||+|.|+|..
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~   29 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVK   29 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            69999999999999999999863

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.82  E-value=0.005  Score=59.74  Aligned_cols=27  Identities=30%  Similarity=0.588  Sum_probs=23.6

Q ss_pred             EEEeCCeEEEEECCCCCCHHHHHHHHh
Q psy13765         57 GRFPSNQLIAIMGPSGAGKSSLLDVLS   83 (606)
Q Consensus        57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L~   83 (606)
                      +=++.|.++-|.||+|+|||||.-.++
T Consensus        55 gG~~~g~i~e~~G~~~~GKT~l~l~~~   81 (269)
T d1mo6a1          55 GGLPRGRVIEIYGPESSGKTTVALHAV   81 (269)
T ss_dssp             SSBCSSSEEEEECSSSSSHHHHHHHHH
T ss_pred             CCcccceeEEEecCCCcHHHHHHHHHH
Confidence            469999999999999999999965554

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=95.79  E-value=0.0021  Score=57.12  Aligned_cols=22  Identities=36%  Similarity=0.483  Sum_probs=19.5

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      +.|+|++||||||+.+.|+..+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6788999999999999998653

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.78  E-value=0.0021  Score=58.90  Aligned_cols=21  Identities=52%  Similarity=0.759  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +.|+||||||||||.+.|...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            679999999999999998653

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=95.76  E-value=0.0018  Score=56.20  Aligned_cols=21  Identities=33%  Similarity=0.404  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +.|+|++|+|||||++.+++-
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            679999999999999999764

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=95.69  E-value=0.0026  Score=55.68  Aligned_cols=23  Identities=48%  Similarity=0.697  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      -++|+|++|+|||||+|.|+|..
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999864

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0025  Score=58.90  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      ++||-||+||||||+-+.|+...
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999997653

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=95.65  E-value=0.0021  Score=56.13  Aligned_cols=22  Identities=41%  Similarity=0.539  Sum_probs=20.0

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      ++|+|++|+|||||++.+.+..
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999998753

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.58  E-value=0.009  Score=55.69  Aligned_cols=93  Identities=15%  Similarity=0.197  Sum_probs=62.0

Q ss_pred             CcEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhccee-eeecCCcEEEEcChhH-----HHHH
Q psy13765        193 PRVMFLDEPTTG-LDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQV-YLLSGGQCLYQGATDQ-----LVNY  265 (606)
Q Consensus       193 P~lllLDEPTsg-LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v-~~L~~G~~~~~G~~~~-----~~~~  265 (606)
                      .++|++|+--.= =+...+..+..++..+.+.|+.+|+++..+..++-..-+++ --++.|-++.-.++++     +..+
T Consensus        98 ~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~p~d~~~~~iL~~~  177 (213)
T d1l8qa2          98 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIELDNKTRFKIIKEK  177 (213)
T ss_dssp             CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCCCHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchhccccchHHHHHhhCceEEEECCCcHHHHHHHHHH
Confidence            899999986321 24677888999999998889999999988765432111111 1246676666555544     3356


Q ss_pred             HHhCCCCCCCCCChHHHHHHHh
Q psy13765        266 LSSVNLPCPKYHNPADFVIELA  287 (606)
Q Consensus       266 f~~~g~~~~~~~~~ad~~~~~~  287 (606)
                      ++..|+..++  +..+|+.+-.
T Consensus       178 a~~rgl~l~~--~v~~yl~~~~  197 (213)
T d1l8qa2         178 LKEFNLELRK--EVIDYLLENT  197 (213)
T ss_dssp             HHHTTCCCCH--HHHHHHHHHC
T ss_pred             HHHcCCCCCH--HHHHHHHHhc
Confidence            7788887764  6777776643

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=95.55  E-value=0.0026  Score=56.77  Aligned_cols=22  Identities=23%  Similarity=0.344  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .+.|+|++||||||+-+.|+-.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~   25 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARA   25 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            3568999999999999999854

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.0031  Score=57.24  Aligned_cols=22  Identities=23%  Similarity=0.427  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++.|+||+||||||..+.|+-.
T Consensus         3 iI~i~GppGSGKsT~a~~La~~   24 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEK   24 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999853

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=0.0015  Score=58.23  Aligned_cols=23  Identities=43%  Similarity=0.577  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++|+|++++|||||+|.|.|..
T Consensus        18 ~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          18 EVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             EEEEEECTTSSHHHHHTTTCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999998853

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.52  E-value=0.0026  Score=57.72  Aligned_cols=21  Identities=19%  Similarity=0.425  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +.|+||+||||||+.+.|+-.
T Consensus         6 I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           6 VMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            679999999999999999854

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.51  E-value=0.003  Score=56.48  Aligned_cols=21  Identities=29%  Similarity=0.536  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +.|+||+||||||+.+.|+-.
T Consensus         3 I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            679999999999999999764

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.51  E-value=0.0031  Score=56.25  Aligned_cols=24  Identities=25%  Similarity=0.391  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      +++.|.|++||||||+.+.|+..+
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L   25 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEIL   25 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            467889999999999999998764

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=95.51  E-value=0.0036  Score=56.75  Aligned_cols=25  Identities=32%  Similarity=0.579  Sum_probs=21.8

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ++|=.+.|+||+||||||.-+.|+.
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHH
Confidence            3566778999999999999999984

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=95.45  E-value=0.0033  Score=55.36  Aligned_cols=22  Identities=27%  Similarity=0.597  Sum_probs=20.0

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      ++|+|++|+|||||++.|.+..
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEECCCCCCHHHHHHHHcCCC
Confidence            7899999999999999998853

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.37  E-value=0.0034  Score=59.50  Aligned_cols=74  Identities=30%  Similarity=0.489  Sum_probs=60.8

Q ss_pred             HHHHHHHcCCcc-ccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchh-hhHHHHHHhhhcC--CcEEEE
Q psy13765        125 IENVMSLLGLDE-SQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQ-KKRLSIALELINN--PRVMFL  198 (606)
Q Consensus       125 v~~~l~~~gl~~-~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~-~krl~IA~aL~~~--P~lllL  198 (606)
                      +.++++.+||.+ ..++++.+|||||||||+|||||+.+|+++++||||++|+... ++-.++-..+..+  -.+++.
T Consensus       125 ~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~v  202 (230)
T d1l2ta_         125 ALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVV  202 (230)
T ss_dssp             HHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEE
Confidence            467788889976 5799999999999999999999999999999999999998764 4555677777654  345554

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.35  E-value=0.0037  Score=55.45  Aligned_cols=22  Identities=27%  Similarity=0.385  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      +.++|++||||||+-+.|+..+
T Consensus         4 IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            4577999999999999998654

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.31  E-value=0.0044  Score=55.78  Aligned_cols=24  Identities=29%  Similarity=0.565  Sum_probs=21.1

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHh
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLS   83 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~   83 (606)
                      ++-+++.++|++||||||+.+-++
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~   35 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHL   35 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            455799999999999999999874

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.30  E-value=0.0041  Score=57.52  Aligned_cols=22  Identities=36%  Similarity=0.611  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +++|.||+||||||.-+.|+..
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999864

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=95.27  E-value=0.0038  Score=56.32  Aligned_cols=21  Identities=33%  Similarity=0.548  Sum_probs=20.0

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +||+|+..||||||+|.|+|.
T Consensus         8 IaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEeCCCCcHHHHHHHHHHh
Confidence            899999999999999999975

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.27  E-value=0.0035  Score=59.50  Aligned_cols=36  Identities=22%  Similarity=0.290  Sum_probs=27.2

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG   98 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G   98 (606)
                      +....+.+.||+|||||||.+.|++...   .+-+.+|+
T Consensus        30 ~~P~~ilL~GpPGtGKT~la~~la~~~~---~~~~~i~~   65 (273)
T d1gvnb_          30 ESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDN   65 (273)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhh---cceEEEec
Confidence            3445688999999999999999998643   23455554

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.25  E-value=0.005  Score=58.64  Aligned_cols=74  Identities=23%  Similarity=0.437  Sum_probs=62.6

Q ss_pred             HHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH-HHHHhhhcC--CcEEEE
Q psy13765        125 IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL-SIALELINN--PRVMFL  198 (606)
Q Consensus       125 v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl-~IA~aL~~~--P~lllL  198 (606)
                      ++++++.+||.+..++++.+|||||||||+|||||+.+|+++++|||+++++...++.+ .+.+.+..+  -.+++.
T Consensus       107 v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~v  183 (240)
T d2onka1         107 VREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHV  183 (240)
T ss_dssp             HHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred             HHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence            68899999999999999999999999999999999999999999999999998665554 555566553  345544

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.24  E-value=0.0062  Score=57.96  Aligned_cols=74  Identities=24%  Similarity=0.455  Sum_probs=63.8

Q ss_pred             HHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH-HHHHhhhc--CCcEEEE
Q psy13765        125 IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL-SIALELIN--NPRVMFL  198 (606)
Q Consensus       125 v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl-~IA~aL~~--~P~lllL  198 (606)
                      ++++++.+||++..++++.+|||||||||+|||+|+.+|+++++|||+++|+...++++ .+-+.|..  +-.+++.
T Consensus       117 ~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~v  193 (239)
T d1v43a3         117 VRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYV  193 (239)
T ss_dssp             HHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence            57889999999999999999999999999999999999999999999999999877666 55666644  3455554

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=95.19  E-value=0.0048  Score=58.81  Aligned_cols=74  Identities=27%  Similarity=0.549  Sum_probs=62.6

Q ss_pred             HHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH-HHHHhhhc--CCcEEEE
Q psy13765        125 IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL-SIALELIN--NPRVMFL  198 (606)
Q Consensus       125 v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl-~IA~aL~~--~P~lllL  198 (606)
                      ++++++.+|+.+..++++++|||||||||+|||||+.+|+++++|||+++|+...+..+ .+-+.|..  +-.+++.
T Consensus       120 v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~v  196 (240)
T d1g2912         120 VREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYV  196 (240)
T ss_dssp             HHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEE
Confidence            68899999999999999999999999999999999999999999999999998755554 45556654  3445554

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.17  E-value=0.0048  Score=56.15  Aligned_cols=23  Identities=30%  Similarity=0.551  Sum_probs=20.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .++.++|.+||||||+.+.|+..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~   25 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRY   25 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999864

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=95.15  E-value=0.005  Score=55.38  Aligned_cols=21  Identities=38%  Similarity=0.563  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +.|+||+||||||+.+.|+-.
T Consensus         3 I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            679999999999999999864

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=95.13  E-value=0.0051  Score=56.53  Aligned_cols=23  Identities=43%  Similarity=0.671  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      +++|.||+||||||+-+.|+..+
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            89999999999999999998753

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.12  E-value=0.0052  Score=57.03  Aligned_cols=28  Identities=25%  Similarity=0.402  Sum_probs=24.8

Q ss_pred             EEEeCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765         57 GRFPSNQLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      +=+++|+++.|.||+|+|||||..-++-
T Consensus        29 GGi~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          29 GGVETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            3599999999999999999999977754

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.05  E-value=0.0061  Score=56.67  Aligned_cols=39  Identities=23%  Similarity=0.152  Sum_probs=28.4

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCCCC-CCccEEEECC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGYRSN-GVTGQILTNG   98 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~-~~~G~I~~~G   98 (606)
                      ++|.++-+.|.|||||||+.+.|.-.+.. ...-.+.++|
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldg   61 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG   61 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcc
Confidence            68999999999999999999999753311 0123455665

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.01  E-value=0.0047  Score=56.67  Aligned_cols=22  Identities=23%  Similarity=0.244  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|++|+|||||++.|.+-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5799999999999999999874

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.98  E-value=0.0056  Score=54.90  Aligned_cols=21  Identities=33%  Similarity=0.597  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +.|+||+||||||+-+.|+..
T Consensus         3 I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            679999999999999999854

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=94.96  E-value=0.0052  Score=54.41  Aligned_cols=23  Identities=30%  Similarity=0.413  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      -++|+|.+|||||||++.|.+..
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~~~   39 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSMNE   39 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999853

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=94.96  E-value=0.0082  Score=57.16  Aligned_cols=74  Identities=30%  Similarity=0.561  Sum_probs=63.2

Q ss_pred             HHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhh-HHHHHHhhhcC--CcEEEE
Q psy13765        125 IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKK-RLSIALELINN--PRVMFL  198 (606)
Q Consensus       125 v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~k-rl~IA~aL~~~--P~lllL  198 (606)
                      ++++++.+||.+..++++++|||||||||+|||||+.+|+++++|||+++|+..-++ -..+-+.|..+  -.+++.
T Consensus       121 v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~v  197 (240)
T d3dhwc1         121 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLI  197 (240)
T ss_dssp             HHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred             HHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEE
Confidence            688999999999999999999999999999999999999999999999999876554 45666777654  345554

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.94  E-value=0.0014  Score=57.56  Aligned_cols=21  Identities=38%  Similarity=0.578  Sum_probs=19.8

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++|+|++|+|||||+|.|+|.
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999985

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.90  E-value=0.0052  Score=59.01  Aligned_cols=23  Identities=43%  Similarity=0.689  Sum_probs=21.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++|+|.+|+|||||+|.|.|..
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            48899999999999999999964

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.87  E-value=0.0055  Score=54.89  Aligned_cols=21  Identities=24%  Similarity=0.376  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +.|+||+||||||..+.|+-.
T Consensus         3 I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            578999999999999999853

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.82  E-value=0.0072  Score=57.61  Aligned_cols=74  Identities=23%  Similarity=0.460  Sum_probs=63.0

Q ss_pred             HHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH-HHHHhhhc--CCcEEEE
Q psy13765        125 IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL-SIALELIN--NPRVMFL  198 (606)
Q Consensus       125 v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl-~IA~aL~~--~P~lllL  198 (606)
                      ++++++.+||++..++++++|||||||||+|||||+.+|+++++|||+++|+..-++.+ .+-+.|..  +-.+++.
T Consensus       121 v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~v  197 (242)
T d1oxxk2         121 VEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVV  197 (242)
T ss_dssp             HHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEE
T ss_pred             HHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEE
Confidence            68899999999999999999999999999999999999999999999999998766544 55556654  3445554

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=94.76  E-value=0.0063  Score=55.06  Aligned_cols=21  Identities=38%  Similarity=0.669  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ++||.|++||||||+.+.|.-
T Consensus         5 IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999963

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.72  E-value=0.0072  Score=54.29  Aligned_cols=21  Identities=33%  Similarity=0.621  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +.|+||+||||||+.+.|+-.
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            568899999999999999864

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=94.68  E-value=0.0073  Score=55.02  Aligned_cols=22  Identities=32%  Similarity=0.510  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .+.|+||+||||||+-+.|+-.
T Consensus         8 rIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999864

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=94.65  E-value=0.0063  Score=53.62  Aligned_cols=21  Identities=19%  Similarity=0.507  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++++|++|+|||||++.+.+-
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            679999999999999988663

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=94.59  E-value=0.0071  Score=60.31  Aligned_cols=26  Identities=27%  Similarity=0.502  Sum_probs=22.9

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ...-++||.||+|||||||++.|...
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~   77 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGML   77 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHH
Confidence            35678999999999999999999754

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.59  E-value=0.0069  Score=54.86  Aligned_cols=25  Identities=28%  Similarity=0.525  Sum_probs=21.9

Q ss_pred             CeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         62 NQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        62 Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .-+++|-|+.||||||+++.|+...
T Consensus         9 p~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           9 PFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3589999999999999999998654

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.0058  Score=57.01  Aligned_cols=27  Identities=30%  Similarity=0.421  Sum_probs=23.9

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGYRS   87 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~~   87 (606)
                      ++.+++|-|+-||||||+++.|+..+.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            468999999999999999999988653

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.49  E-value=0.0057  Score=58.00  Aligned_cols=74  Identities=24%  Similarity=0.461  Sum_probs=43.6

Q ss_pred             HHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH-HHHHhhhcC--CcEEEE
Q psy13765        125 IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL-SIALELINN--PRVMFL  198 (606)
Q Consensus       125 v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl-~IA~aL~~~--P~lllL  198 (606)
                      ++++++.++|.+..++++.+|||||||||+|||+|+.+|+++++|||+++|+...++.+ .+.+.+..+  -.+++.
T Consensus       111 v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~v  187 (232)
T d2awna2         111 VNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV  187 (232)
T ss_dssp             HHHHHHHC---------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred             HHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            68899999999999999999999999999999999999999999999999999877766 566777553  444543

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.49  E-value=0.0087  Score=55.53  Aligned_cols=27  Identities=30%  Similarity=0.252  Sum_probs=23.7

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      ++|.+++|-|+.||||||+.+.|+..+
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L   27 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEAL   27 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence            478999999999999999999987643

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=94.46  E-value=0.0077  Score=53.42  Aligned_cols=22  Identities=36%  Similarity=0.552  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++++|++|+|||||++.+.+-
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999999774

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.44  E-value=0.011  Score=55.32  Aligned_cols=25  Identities=24%  Similarity=0.509  Sum_probs=22.6

Q ss_pred             EEeCCeEEEEECCCCCCHHHHHHHH
Q psy13765         58 RFPSNQLIAIMGPSGAGKSSLLDVL   82 (606)
Q Consensus        58 ~i~~Ge~~aIiGpsGaGKSTLL~~L   82 (606)
                      =+++|+++.|.||+|+|||||.--+
T Consensus        32 Glp~G~~~li~G~pGsGKT~~~lq~   56 (254)
T d1pzna2          32 GIETQAITEVFGEFGSGKTQLAHTL   56 (254)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHH
T ss_pred             CccCCEEEEEEcCCCCCHHHHHHHH
Confidence            4999999999999999999997644

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.35  E-value=0.011  Score=54.50  Aligned_cols=28  Identities=21%  Similarity=0.383  Sum_probs=24.5

Q ss_pred             EEEeCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765         57 GRFPSNQLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      +=+++|+++.|.||+|+|||||..-++-
T Consensus        29 GGl~~G~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          29 GGLESQSVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            4599999999999999999999866653

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=94.34  E-value=0.0055  Score=57.98  Aligned_cols=68  Identities=19%  Similarity=0.305  Sum_probs=54.2

Q ss_pred             cHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccccc-------CCCCCCCCchhhhHH-HHHHhhhcC--C
Q psy13765        124 TIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFL-------DEPTTSNPNDQKKRL-SIALELINN--P  193 (606)
Q Consensus       124 tv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~-------de~~~~~s~g~~krl-~IA~aL~~~--P  193 (606)
                      .++++++.+++.+..++++.+|||||||||+|||||       +.       |||+++|+...++.+ .+.+.+..+  -
T Consensus       107 ~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL-------~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~  179 (229)
T d3d31a2         107 RVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARAL-------VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL  179 (229)
T ss_dssp             HHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHT-------TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhh-------hccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCc
Confidence            478899999999999999999999999999999974       53       999999998655554 556666543  3


Q ss_pred             cEEEE
Q psy13765        194 RVMFL  198 (606)
Q Consensus       194 ~lllL  198 (606)
                      .+++.
T Consensus       180 tii~v  184 (229)
T d3d31a2         180 TVLHI  184 (229)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            45543

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.33  E-value=0.01  Score=54.65  Aligned_cols=26  Identities=31%  Similarity=0.420  Sum_probs=23.2

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      +|.+++|-|+.||||||+.+.|+..+
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999999998643

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.29  E-value=0.009  Score=61.18  Aligned_cols=22  Identities=41%  Similarity=0.806  Sum_probs=20.8

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      +||+|.+|+|||||+|.|.|..
T Consensus        59 Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          59 VAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             EEEEECTTSSHHHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            8999999999999999999964

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.26  E-value=0.01  Score=55.83  Aligned_cols=25  Identities=20%  Similarity=0.332  Sum_probs=21.8

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .+..+.|.||+|+|||||++.++..
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~   52 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINE   52 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence            5678999999999999999987643

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.24  E-value=0.012  Score=54.71  Aligned_cols=27  Identities=26%  Similarity=0.368  Sum_probs=24.4

Q ss_pred             EEEeCCeEEEEECCCCCCHHHHHHHHh
Q psy13765         57 GRFPSNQLIAIMGPSGAGKSSLLDVLS   83 (606)
Q Consensus        57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L~   83 (606)
                      +=+++|+++.|.||+|+|||||.-.++
T Consensus        32 GGip~G~~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          32 GGIESMAITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             SSBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred             CCCcCCEEEEEECCCCCCHHHHHHHHH
Confidence            359999999999999999999987765

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.20  E-value=0.011  Score=55.46  Aligned_cols=24  Identities=21%  Similarity=0.437  Sum_probs=21.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      ..+.|.||+|+||||+.++|+...
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999753

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.18  E-value=0.0074  Score=57.95  Aligned_cols=74  Identities=24%  Similarity=0.441  Sum_probs=64.7

Q ss_pred             HHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH-HHHHhhhcC-CcEEEE
Q psy13765        125 IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL-SIALELINN-PRVMFL  198 (606)
Q Consensus       125 v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl-~IA~aL~~~-P~lllL  198 (606)
                      ++++++.+++.+..++++++|||||||||+|||+|+.+|+++++|||+++|+.+.++.+ .+.+.+..+ -.|++.
T Consensus       131 ~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~v  206 (254)
T d1g6ha_         131 AFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLII  206 (254)
T ss_dssp             HHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence            46788889999999999999999999999999999999999999999999999888776 677777554 456665

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.17  E-value=0.0094  Score=52.83  Aligned_cols=21  Identities=38%  Similarity=0.623  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++|+|++|+|||||++.+.+-
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999998753

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.15  E-value=0.011  Score=58.67  Aligned_cols=57  Identities=12%  Similarity=0.178  Sum_probs=38.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec----CCchHHHhhcceeeeec
Q psy13765        193 PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIH----QPSATLFQMFDQVYLLS  249 (606)
Q Consensus       193 P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H----~~~~~i~~~~D~v~~L~  249 (606)
                      |.+.+=.=||.|-...-...+.+.+.-+...|.-+|++..    |-+..+..++|..+++.
T Consensus       112 ~~~~ir~~~~~~~~gg~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~~~~~D~~v~v~  172 (323)
T d2qm8a1         112 RNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLM  172 (323)
T ss_dssp             TTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEE
T ss_pred             cceeeccccccccccchhHHHHHHHHhhccCCCCeEEEeehhhhhhhhhhhcccceEEEEe
Confidence            6677777777777776667777776666556776666665    44456667788776664

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.12  E-value=0.017  Score=53.36  Aligned_cols=23  Identities=30%  Similarity=0.457  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      -+.+.||+|+||||+.+.++..+
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~~l   48 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSRYL   48 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHhc
Confidence            47899999999999999998743

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.10  E-value=0.0098  Score=52.66  Aligned_cols=20  Identities=40%  Similarity=0.532  Sum_probs=18.4

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ++++|++|+|||||++.+.+
T Consensus         8 i~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999998865

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.06  E-value=0.0089  Score=52.70  Aligned_cols=21  Identities=33%  Similarity=0.507  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++++|++|+|||||++.+.+-
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999988763

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.04  E-value=0.012  Score=54.73  Aligned_cols=22  Identities=27%  Similarity=0.444  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .+.|.||+|+||||+.++|+..
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3789999999999999999874

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=94.03  E-value=0.014  Score=54.19  Aligned_cols=25  Identities=24%  Similarity=0.618  Sum_probs=20.9

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++.+++++||+|+||||.+-=|+.+
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~   29 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRY   29 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            5679999999999999997666643

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.01  E-value=0.024  Score=51.22  Aligned_cols=34  Identities=24%  Similarity=0.184  Sum_probs=26.0

Q ss_pred             ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765         50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ..++..-..+ .|.=++|.|+||+|||||.-.|..
T Consensus         3 ~~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_           3 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            3456555544 588899999999999999877654

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.95  E-value=0.031  Score=52.45  Aligned_cols=51  Identities=16%  Similarity=0.218  Sum_probs=32.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhccee
Q psy13765        193 PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQV  245 (606)
Q Consensus       193 P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v  245 (606)
                      .+++++||.= .|+..++..+.+.+.+-. .+..+|+++++++..+..+-.|.
T Consensus       116 ~kviiIde~d-~l~~~~q~~Llk~lE~~~-~~~~~il~tn~~~~i~~~i~SRc  166 (239)
T d1njfa_         116 FKVYLIDEVH-MLSRHSFNALLKTLEEPP-EHVKFLLATTDPQKLPVTILSRC  166 (239)
T ss_dssp             SEEEEEETGG-GSCHHHHHHHHHHHHSCC-TTEEEEEEESCGGGSCHHHHTTS
T ss_pred             CEEEEEECcc-cCCHHHHHHHHHHHhcCC-CCeEEEEEcCCccccChhHhhhh
Confidence            6799999984 377777666655554321 35678889888765433444444

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.92  E-value=0.012  Score=55.25  Aligned_cols=22  Identities=32%  Similarity=0.720  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++||+|..+||||||++.|.+.
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhh
Confidence            5999999999999999999873

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=93.82  E-value=0.028  Score=50.79  Aligned_cols=34  Identities=21%  Similarity=0.131  Sum_probs=27.5

Q ss_pred             ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765         50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ..++.....+ .|.-+.|.||||+|||||.-.|..
T Consensus         4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2           4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             ceEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            3466666666 788999999999999999977764

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=93.80  E-value=0.014  Score=54.47  Aligned_cols=23  Identities=26%  Similarity=0.589  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      -+.+.||+|+||||+.++|+...
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~   59 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASEL   59 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHhcc
Confidence            37799999999999999998753

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.79  E-value=0.012  Score=52.32  Aligned_cols=20  Identities=40%  Similarity=0.753  Sum_probs=18.2

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ++++|++|+|||||++.+.+
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998765

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.79  E-value=0.015  Score=51.07  Aligned_cols=20  Identities=25%  Similarity=0.529  Sum_probs=17.9

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ++++|++|+|||||++-+.+
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999997764

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=93.78  E-value=0.015  Score=53.45  Aligned_cols=21  Identities=19%  Similarity=0.659  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ++||.|+.||||||+.+.+.-
T Consensus         4 iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999963

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.016  Score=51.95  Aligned_cols=21  Identities=29%  Similarity=0.518  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++|+|++|+|||||++.+.+-
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            789999999999999998864

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.74  E-value=0.016  Score=51.07  Aligned_cols=21  Identities=38%  Similarity=0.542  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++|+|++|+|||||++-+.+-
T Consensus         5 i~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999987763

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.73  E-value=0.015  Score=53.94  Aligned_cols=27  Identities=26%  Similarity=0.332  Sum_probs=24.3

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGYRS   87 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~~   87 (606)
                      +|.+++|=|+-||||||+.+.|+..+.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            699999999999999999999986553

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=93.62  E-value=0.011  Score=56.36  Aligned_cols=50  Identities=30%  Similarity=0.439  Sum_probs=40.1

Q ss_pred             ccccCChHHHHHHHHHHHHhcCCccccc--------CCCCCCCCc-hhhhHHHHHHhhhcCCcEEEE
Q psy13765        141 RSSQLSGGQKKRLSIALELINNPRVMFL--------DEPTTSNPN-DQKKRLSIALELINNPRVMFL  198 (606)
Q Consensus       141 ~~~~lSgGqrqRv~ia~~L~~~~~~~~~--------de~~~~~s~-g~~krl~IA~aL~~~P~lllL  198 (606)
                      ...+||||||||++|||||        +        |||+++++. .+++-....+.+..+--+++.
T Consensus       136 ~g~~LSGGqkQRv~iARal--------~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~i  194 (242)
T d1mv5a_         136 RGVKISGGQRQRLAIARAF--------LRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVI  194 (242)
T ss_dssp             TSBCCCHHHHHHHHHHHHH--------HHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHH--------hcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            4457999999999999984        7        999999976 566677777778776666665

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=93.56  E-value=0.015  Score=57.26  Aligned_cols=23  Identities=35%  Similarity=0.499  Sum_probs=20.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      ++||-|++||||||+-+.|..++
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL  104 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHH
Confidence            89999999999999999987654

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.53  E-value=0.018  Score=50.77  Aligned_cols=22  Identities=32%  Similarity=0.735  Sum_probs=19.6

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      ++|+|++|+|||||++.+.+..
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEECCCCcCHHHHHHHHhCCc
Confidence            6899999999999999998863

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.53  E-value=0.013  Score=56.12  Aligned_cols=59  Identities=31%  Similarity=0.425  Sum_probs=44.2

Q ss_pred             CCccccCCccccCChHHHHHHHHHHHHhcCCccccc-------CCCCCCCCchhhh-HHHHHHhhhcCCcEEEE
Q psy13765        133 GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFL-------DEPTTSNPNDQKK-RLSIALELINNPRVMFL  198 (606)
Q Consensus       133 gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~-------de~~~~~s~g~~k-rl~IA~aL~~~P~lllL  198 (606)
                      |++...+..+.+||||||||++|||||       +.       |||+++|+.--++ -...-+.+..+--+++.
T Consensus       141 gl~t~~~~~~~~LSGGqkQRvaiARal-------~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~i  207 (253)
T d3b60a1         141 GLDTIIGENGVLLSGGQRQRIAIARAL-------LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVI  207 (253)
T ss_dssp             GGGSBCCTTSCSSCHHHHHHHHHHHHH-------HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred             cchhhhcCCCCCcCHHHHHHHHHHHHH-------hcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEE
Confidence            456666667778999999999999986       52       9999999975444 44566667666556655

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.51  E-value=0.013  Score=56.18  Aligned_cols=58  Identities=28%  Similarity=0.433  Sum_probs=41.9

Q ss_pred             CCccccCCccccCChHHHHHHHHHHHHhcCCccccc--------CCCCCCCCch-hhhHHHHHHhhhcC--CcEEEE
Q psy13765        133 GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFL--------DEPTTSNPND-QKKRLSIALELINN--PRVMFL  198 (606)
Q Consensus       133 gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~--------de~~~~~s~g-~~krl~IA~aL~~~--P~lllL  198 (606)
                      |++...++.+.+||||||||++|||+|        .        ||||++|+.. +++-.++.+.+..+  --+++.
T Consensus       140 g~~~~i~~~~~~LSGGqkQRvaiARal--------~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~i  208 (251)
T d1jj7a_         140 GYDTEVDEAGSQLSGGQRQAVALARAL--------IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLI  208 (251)
T ss_dssp             GGGCBCCSSCSSSCHHHHHHHHHHHHH--------TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEE
T ss_pred             cchhhHhccCccCChhHceEEEEeecc--------ccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEE
Confidence            556666777788999999999999985        7        9999999875 44445555555543  334443

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.51  E-value=0.013  Score=51.54  Aligned_cols=21  Identities=43%  Similarity=0.564  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++++|++|+|||||++.+.+-
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999987653

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=93.48  E-value=0.012  Score=55.90  Aligned_cols=66  Identities=23%  Similarity=0.367  Sum_probs=50.8

Q ss_pred             HHHHHHc-CCccccCCccccCChHHHHHHHHHHHHhcCCccccc-------CCCCCCCCchhhhH-HHHHHhhhcC-CcE
Q psy13765        126 ENVMSLL-GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFL-------DEPTTSNPNDQKKR-LSIALELINN-PRV  195 (606)
Q Consensus       126 ~~~l~~~-gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~-------de~~~~~s~g~~kr-l~IA~aL~~~-P~l  195 (606)
                      +++++.+ ++.+..++++++|||||||||+||+||       +.       |||+++++...++. .++-+.|..+ -.+
T Consensus       120 ~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL-------~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~ti  192 (240)
T d1ji0a_         120 EWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRAL-------MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTI  192 (240)
T ss_dssp             HHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHH-------TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCE
T ss_pred             HHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHH-------HhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEE
Confidence            4555555 688899999999999999999999985       53       99999999876665 5666677665 335


Q ss_pred             EEE
Q psy13765        196 MFL  198 (606)
Q Consensus       196 llL  198 (606)
                      ++.
T Consensus       193 l~~  195 (240)
T d1ji0a_         193 LLV  195 (240)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=93.47  E-value=0.016  Score=56.97  Aligned_cols=26  Identities=27%  Similarity=0.558  Sum_probs=21.7

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      |+.-+.+.||+|+|||+|.|+|+...
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~   73 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLA   73 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhcc
Confidence            34456689999999999999999753

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.47  E-value=0.013  Score=51.54  Aligned_cols=21  Identities=43%  Similarity=0.425  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      -++|+|++|+|||||++.+.+
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999999764

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=93.47  E-value=0.014  Score=54.49  Aligned_cols=21  Identities=33%  Similarity=0.718  Sum_probs=19.3

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +.+.||+|+||||+.+++++.
T Consensus        38 ~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            569999999999999999875

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.47  E-value=0.021  Score=50.51  Aligned_cols=20  Identities=35%  Similarity=0.667  Sum_probs=17.9

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ++++|++|+|||||++-+.+
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999987764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.41  E-value=0.015  Score=51.49  Aligned_cols=21  Identities=38%  Similarity=0.559  Sum_probs=18.4

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++|+|++|+|||||++.+.+-
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            679999999999999987653

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.40  E-value=0.018  Score=53.39  Aligned_cols=21  Identities=33%  Similarity=0.583  Sum_probs=19.3

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +.+-||+|+||||+.++++..
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            679999999999999999864

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.38  E-value=0.01  Score=58.00  Aligned_cols=22  Identities=32%  Similarity=0.605  Sum_probs=17.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++||-|+|||||||+.+.|...
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i   27 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQI   27 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            7999999999999999998764

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=93.36  E-value=0.024  Score=52.58  Aligned_cols=25  Identities=28%  Similarity=0.465  Sum_probs=20.8

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ...+++++||+|+||||.+-=|+.+
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~   33 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALY   33 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3568999999999999998777754

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=93.34  E-value=0.012  Score=52.59  Aligned_cols=20  Identities=45%  Similarity=0.632  Sum_probs=18.1

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ++++|++|+|||||++.+.+
T Consensus        20 I~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          20 ILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             EEEEEETTSSHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            67999999999999998865

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.23  E-value=0.015  Score=51.35  Aligned_cols=21  Identities=29%  Similarity=0.433  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      -++|+|.+|+|||||++.+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            388999999999999998765

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=93.22  E-value=0.017  Score=54.99  Aligned_cols=56  Identities=23%  Similarity=0.337  Sum_probs=42.6

Q ss_pred             cccCCccccCChHHHHHHHHHHHHhcCCccccc-------CCCCCCCCc-hhhhHHHHHHhhhcCCcEEEE
Q psy13765        136 ESQNTRSSQLSGGQKKRLSIALELINNPRVMFL-------DEPTTSNPN-DQKKRLSIALELINNPRVMFL  198 (606)
Q Consensus       136 ~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~-------de~~~~~s~-g~~krl~IA~aL~~~P~lllL  198 (606)
                      ...+..+.+||||||||++|||+|       +.       |||+++|+. .+++-....+.+..+--+++.
T Consensus       131 t~i~~~g~~LSGGq~QRvalARal-------~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~i  194 (241)
T d2pmka1         131 TIVGEQGAGLSGGQRQRIAIARAL-------VNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIII  194 (241)
T ss_dssp             SBCSTTTTCCCHHHHHHHHHHHHH-------TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred             hhcCCCCCccCHHHHHHHhhhhhh-------hcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEE
Confidence            344555678999999999999985       53       999999987 555566677777776666665

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.17  E-value=0.018  Score=50.59  Aligned_cols=21  Identities=29%  Similarity=0.485  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++|+|++|+|||||++-+.+-
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.10  E-value=0.02  Score=50.61  Aligned_cols=21  Identities=29%  Similarity=0.577  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++|+|++|+|||||++.+.+-
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988753

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=93.10  E-value=0.023  Score=52.22  Aligned_cols=21  Identities=29%  Similarity=0.651  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ++||.|+.||||||..+.+..
T Consensus         5 iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            789999999999999999863

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.10  E-value=0.025  Score=52.96  Aligned_cols=26  Identities=23%  Similarity=0.310  Sum_probs=22.3

Q ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCC
Q psy13765         62 NQLIAIMGPSGAGKSSLLDVLSGYRS   87 (606)
Q Consensus        62 Ge~~aIiGpsGaGKSTLL~~L~g~~~   87 (606)
                      ...+.|.||+|+||||+++.|+..+.
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHh
Confidence            35788999999999999999987643

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.09  E-value=0.023  Score=49.64  Aligned_cols=20  Identities=30%  Similarity=0.489  Sum_probs=18.2

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ++++|+.|+|||||++-+.+
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998864

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=93.08  E-value=0.028  Score=49.77  Aligned_cols=27  Identities=22%  Similarity=0.247  Sum_probs=24.6

Q ss_pred             EeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         59 FPSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      .++|.++++-|+=|||||||.|.++.-
T Consensus        30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          30 TEKAIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEecCCCccHHHHHHHHHhh
Confidence            479999999999999999999998754

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.07  E-value=0.024  Score=50.23  Aligned_cols=22  Identities=32%  Similarity=0.792  Sum_probs=19.9

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      +.++|++|+|||||++.+.+..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCc
Confidence            6799999999999999998753

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.05  E-value=0.019  Score=51.37  Aligned_cols=20  Identities=40%  Similarity=0.738  Sum_probs=18.2

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ++++|.+|+|||||++.+.+
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998775

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.01  E-value=0.019  Score=50.39  Aligned_cols=21  Identities=38%  Similarity=0.569  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++|+|++|+|||||++.+.+-
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999887653

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=92.98  E-value=0.022  Score=54.08  Aligned_cols=24  Identities=21%  Similarity=0.335  Sum_probs=20.8

Q ss_pred             CeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         62 NQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        62 Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -.-+.+.||+|+|||++.++|+..
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhc
Confidence            345789999999999999999864

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.90  E-value=0.02  Score=50.87  Aligned_cols=21  Identities=52%  Similarity=0.656  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++++|+.|+|||||++.+.+-
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            779999999999999988763

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.85  E-value=0.019  Score=50.28  Aligned_cols=21  Identities=24%  Similarity=0.407  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++|+|.+|+|||||++.+.+-
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999988753

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=92.84  E-value=0.017  Score=51.21  Aligned_cols=22  Identities=32%  Similarity=0.371  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -+.++|++|+|||||++.+.+-
T Consensus        14 kIvlvG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3679999999999999998754

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=92.71  E-value=0.025  Score=52.73  Aligned_cols=25  Identities=24%  Similarity=0.414  Sum_probs=20.1

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +-.+++++||+|+||||.+-=||-+
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLAa~   34 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLAKM   34 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999987666643

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.69  E-value=0.028  Score=49.33  Aligned_cols=20  Identities=30%  Similarity=0.602  Sum_probs=18.3

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ++|+|.+|+|||||++-+.+
T Consensus         7 i~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            77999999999999998875

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.66  E-value=0.029  Score=50.85  Aligned_cols=23  Identities=57%  Similarity=0.754  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      +++|-|+-||||||+++.|...+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999998654

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=92.65  E-value=0.012  Score=55.53  Aligned_cols=25  Identities=16%  Similarity=0.217  Sum_probs=22.5

Q ss_pred             ccCCCCCCCCchhhhHHHHHHhhhc
Q psy13765        167 FLDEPTTSNPNDQKKRLSIALELIN  191 (606)
Q Consensus       167 ~~de~~~~~s~g~~krl~IA~aL~~  191 (606)
                      .++.+...|||||||||.||+||++
T Consensus       118 ~~~~~~~~LSgG~~Qrv~iA~al~~  142 (231)
T d1l7vc_         118 KLGRSTNQLSGGEWQRVRLAAVVLQ  142 (231)
T ss_dssp             TTTSBGGGCCHHHHHHHHHHHHHHH
T ss_pred             HhCcChhhcCHHHHHHHHHHHHHHh
Confidence            4688888999999999999999876

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.58  E-value=0.021  Score=51.73  Aligned_cols=20  Identities=45%  Similarity=0.665  Sum_probs=18.3

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ++|+|+.|+|||||++.+.+
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            78999999999999998764

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.48  E-value=0.025  Score=49.62  Aligned_cols=20  Identities=25%  Similarity=0.434  Sum_probs=18.0

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ++|+|.+|+|||||++.+.+
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998764

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.47  E-value=0.023  Score=54.52  Aligned_cols=74  Identities=31%  Similarity=0.488  Sum_probs=60.6

Q ss_pred             HHHHHHHcCCccc-cCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhH-HHHHHhhhcC-CcEEEE
Q psy13765        125 IENVMSLLGLDES-QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKR-LSIALELINN-PRVMFL  198 (606)
Q Consensus       125 v~~~l~~~gl~~~-~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~kr-l~IA~aL~~~-P~lllL  198 (606)
                      +.++++.+|+.+. .++.+++|||||||||+|||+|+.+|+++++||||++|+.+.++. ..+.+.|..+ -.+++.
T Consensus       129 ~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~v  205 (258)
T d1b0ua_         129 ALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVV  205 (258)
T ss_dssp             HHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEE
Confidence            5788899999774 577899999999999999999999999999999999999875554 4566666655 235554

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.41  E-value=0.019  Score=50.81  Aligned_cols=21  Identities=33%  Similarity=0.525  Sum_probs=8.5

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++|+|.+|+|||||++.+.+-
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEECCCCC------------
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999987653

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=92.37  E-value=0.032  Score=51.81  Aligned_cols=24  Identities=25%  Similarity=0.372  Sum_probs=16.0

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ...+++++||+|+||||.+-=|+-
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~   34 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAY   34 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999998766664

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.37  E-value=0.028  Score=49.83  Aligned_cols=22  Identities=36%  Similarity=0.425  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -+.|+|++|+|||||++.+.+-
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3679999999999999888753

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.35  E-value=0.023  Score=50.16  Aligned_cols=20  Identities=35%  Similarity=0.630  Sum_probs=18.3

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ++++|++|+|||||++.+.+
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998764

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=92.33  E-value=0.029  Score=52.12  Aligned_cols=24  Identities=25%  Similarity=0.455  Sum_probs=19.8

Q ss_pred             CeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         62 NQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        62 Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -.+++++||+|+||||.+-=|+-+
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~   32 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQ   32 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999988666643

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.26  E-value=0.02  Score=50.70  Aligned_cols=20  Identities=20%  Similarity=0.514  Sum_probs=17.4

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ++++|++|+|||||++.+++
T Consensus         6 i~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC-
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987754

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.23  E-value=0.033  Score=51.47  Aligned_cols=21  Identities=29%  Similarity=0.455  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +.+-||+|+||||+.++++.-
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHH
Confidence            678999999999999999863

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.18  E-value=0.029  Score=49.37  Aligned_cols=21  Identities=38%  Similarity=0.556  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++++|++|+|||||++-+.+-
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999988753

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.14  E-value=0.029  Score=49.30  Aligned_cols=20  Identities=25%  Similarity=0.509  Sum_probs=17.7

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ++++|++|+|||||++-+.+
T Consensus         6 i~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999997654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.09  E-value=0.036  Score=49.45  Aligned_cols=22  Identities=23%  Similarity=0.336  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++|+|.+|+|||||++.+.+-
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4889999999999999887753

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.02  E-value=0.033  Score=49.23  Aligned_cols=20  Identities=30%  Similarity=0.491  Sum_probs=18.1

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ++|+|.+|+|||||++-+.+
T Consensus         9 v~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           9 LVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.98  E-value=0.038  Score=48.58  Aligned_cols=21  Identities=33%  Similarity=0.464  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      -++++|++|+|||||++-+.+
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            368999999999999998874

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=91.93  E-value=0.039  Score=49.92  Aligned_cols=22  Identities=32%  Similarity=0.575  Sum_probs=20.3

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      +||+|.-.+|||||++.|+|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            7999999999999999999864

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.90  E-value=0.034  Score=54.46  Aligned_cols=22  Identities=23%  Similarity=0.436  Sum_probs=19.5

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      +||+|-+.+|||||+|+|+|-.
T Consensus         3 v~lvG~pn~GKStlfn~lt~~~   24 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLVD   24 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC--
T ss_pred             EeEECCCCCCHHHHHHHHHCCC
Confidence            7999999999999999999963

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.84  E-value=0.041  Score=53.45  Aligned_cols=21  Identities=33%  Similarity=0.433  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ++||-|+.|||||||-+.|.-
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~   49 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYN   49 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHH
Confidence            889999999999999987754

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.84  E-value=0.034  Score=53.78  Aligned_cols=34  Identities=29%  Similarity=0.515  Sum_probs=27.2

Q ss_pred             ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .+|+.++-.|   -+++|+||-++|||||||.|.|..
T Consensus        23 ~~l~~~~~~v---~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          23 KILSAITQPM---VVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             HHHHTCCSBE---EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             HHHHcCCCCE---EEEEEECCCCCCHHHHHHHHcCCC
Confidence            4566664433   589999999999999999999863

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.83  E-value=0.033  Score=48.97  Aligned_cols=20  Identities=35%  Similarity=0.639  Sum_probs=17.9

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ++|+|++|+|||||++.+.+
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999997644

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.80  E-value=0.034  Score=49.01  Aligned_cols=20  Identities=30%  Similarity=0.489  Sum_probs=17.9

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g   84 (606)
                      +.++|++|+|||||++-+.+
T Consensus         7 i~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67899999999999998765

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.80  E-value=0.043  Score=52.30  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      -+.+.||+|+|||+|.++++...
T Consensus        40 giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eeEEecCCCCCchHHHHHHHHHh
Confidence            37899999999999999999853

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.74  E-value=0.071  Score=48.70  Aligned_cols=54  Identities=11%  Similarity=0.141  Sum_probs=35.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeee
Q psy13765        193 PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL  248 (606)
Q Consensus       193 P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L  248 (606)
                      .+|+++||. -.|...++..+.+.|.+-. .+..+|+++++++..+-.+-.|+..+
T Consensus        80 ~KviIId~a-d~l~~~aqNaLLK~LEEPp-~~t~fiLit~~~~~ll~TI~SRC~~i  133 (198)
T d2gnoa2          80 RKYVIVHDC-ERMTQQAANAFLKALEEPP-EYAVIVLNTRRWHYLLPTIKSRVFRV  133 (198)
T ss_dssp             SEEEEETTG-GGBCHHHHHHTHHHHHSCC-TTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred             CEEEEEeCc-cccchhhhhHHHHHHhCCC-CCceeeeccCChhhCHHHHhcceEEE
Confidence            789999995 3477777777777775432 35678888988775443444454433

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.73  E-value=0.04  Score=49.33  Aligned_cols=19  Identities=32%  Similarity=0.651  Sum_probs=17.3

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q psy13765         65 IAIMGPSGAGKSSLLDVLS   83 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~   83 (606)
                      +.|+|.+|+|||||++-+.
T Consensus         5 ivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            6799999999999999883

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.68  E-value=0.029  Score=54.48  Aligned_cols=53  Identities=23%  Similarity=0.325  Sum_probs=36.1

Q ss_pred             cCCccccCChHHHHHHHHHHHHhcCCccccc-------CCCCCCCCchhhhHH-HH-HHhhhcCCcEEE
Q psy13765        138 QNTRSSQLSGGQKKRLSIALELINNPRVMFL-------DEPTTSNPNDQKKRL-SI-ALELINNPRVMF  197 (606)
Q Consensus       138 ~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~-------de~~~~~s~g~~krl-~I-A~aL~~~P~lll  197 (606)
                      .+....+|||||||||+|||+|       +.       |||+++|+...++++ .. ...+..+--+++
T Consensus       152 ~~~~~~~LSgGqkQRv~lARaL-------~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~  213 (281)
T d1r0wa_         152 LGEGGVTLSGGQRARISLARAV-------YKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL  213 (281)
T ss_dssp             ECTTCTTSCHHHHHHHHHHHHH-------HSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEE
T ss_pred             hhhhccCCCHHHHHHHHHHHHH-------HhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEE
Confidence            3445567999999999999985       42       999999997655554 33 233334444444

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.67  E-value=0.041  Score=50.72  Aligned_cols=41  Identities=7%  Similarity=0.187  Sum_probs=26.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765        193 PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS  235 (606)
Q Consensus       193 P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~  235 (606)
                      .+++++||.- .+.......+.+.|.+..+ ...++++++++.
T Consensus       100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~-~~~~~~~~~~~~  140 (227)
T d1sxjc2         100 FKLIILDEAD-AMTNAAQNALRRVIERYTK-NTRFCVLANYAH  140 (227)
T ss_dssp             CEEEEETTGG-GSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred             eEEEEEeccc-cchhhHHHHHHHHhhhccc-ceeeccccCcHH
Confidence            6799999964 5777777777777655432 344556665544

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=91.65  E-value=0.044  Score=48.24  Aligned_cols=21  Identities=29%  Similarity=0.403  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      -++|+|++|+|||||++.+.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998754

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.59  E-value=0.025  Score=54.21  Aligned_cols=54  Identities=31%  Similarity=0.393  Sum_probs=38.3

Q ss_pred             ccCCccccCChHHHHHHHHHHHHhcCCccccc--------CCCCCCCCchhhhHH-HHHHhhhcCCcEEEE
Q psy13765        137 SQNTRSSQLSGGQKKRLSIALELINNPRVMFL--------DEPTTSNPNDQKKRL-SIALELINNPRVMFL  198 (606)
Q Consensus       137 ~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~--------de~~~~~s~g~~krl-~IA~aL~~~P~lllL  198 (606)
                      ..+....+||||||||++|||+|        +        |||+++|+.--++++ .....+..+--+++.
T Consensus       147 ~i~~~g~~LSgGq~QRi~iARal--------~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~i  209 (255)
T d2hyda1         147 EVGERGVKLSGGQKQRLSIARIF--------LNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIV  209 (255)
T ss_dssp             BCCGGGTTSCHHHHHHHHHHHHH--------HHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred             hhcCCCCCcCHHHHHHHHHHHHH--------hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence            33444567999999999999985        8        999999987544444 444555555555554

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=91.53  E-value=0.031  Score=52.56  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      ++.|.||+|+||||+++.++..+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            45567999999999999998653

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.37  E-value=0.04  Score=49.11  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -++++|++|+|||||++-+.+-
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999977653

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=91.32  E-value=0.077  Score=47.37  Aligned_cols=33  Identities=27%  Similarity=0.117  Sum_probs=25.2

Q ss_pred             cceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765         51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        51 iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      .++..-. .-.|.=+.|.|+||+|||||.-.|..
T Consensus         5 ~~H~~~v-~~~g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2           5 SLHGVLV-DVYGVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             EEESEEE-EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEE-EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence            4555444 44688999999999999999866653

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.31  E-value=0.046  Score=53.11  Aligned_cols=29  Identities=28%  Similarity=0.311  Sum_probs=26.0

Q ss_pred             EEEeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         57 GRFPSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      +.|-+|+..+|+|++|+|||||+..|+..
T Consensus        38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             SCCBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred             ccccCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence            36789999999999999999999998763

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.26  E-value=0.045  Score=48.98  Aligned_cols=20  Identities=25%  Similarity=0.459  Sum_probs=18.2

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ++|+|.+|+|||||++.+..
T Consensus        12 i~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            78999999999999988764

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=90.98  E-value=0.038  Score=53.73  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -+||+|.+.+|||||+|+|++-
T Consensus        12 kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            3899999999999999999974

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=90.96  E-value=0.048  Score=52.95  Aligned_cols=23  Identities=35%  Similarity=0.619  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++|+|.-+||||||+|+|.|..
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999964

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.92  E-value=0.053  Score=50.19  Aligned_cols=20  Identities=20%  Similarity=0.539  Sum_probs=17.8

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy13765         64 LIAIMGPSGAGKSSLLDVLS   83 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~   83 (606)
                      -+.|+|++|+|||||++-+.
T Consensus         8 KilllG~~~vGKTsll~~~~   27 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMR   27 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            46899999999999999874

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.91  E-value=0.057  Score=47.19  Aligned_cols=20  Identities=30%  Similarity=0.572  Sum_probs=18.0

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ++|+|.+|+|||||++-+.+
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            68999999999999998764

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.66  E-value=0.051  Score=52.45  Aligned_cols=23  Identities=43%  Similarity=0.631  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .++|+|.-.||||||+|+|.|..
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHhCCC
Confidence            37899999999999999999964

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.46  E-value=0.066  Score=49.05  Aligned_cols=73  Identities=21%  Similarity=0.425  Sum_probs=58.4

Q ss_pred             HHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH-HHHHhhhcCCcEEEE
Q psy13765        125 IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL-SIALELINNPRVMFL  198 (606)
Q Consensus       125 v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl-~IA~aL~~~P~lllL  198 (606)
                      +.+.++.+++.+ .++++++||||||||++||++|+.+|+++++|||+++++...++++ ..-..+..+..++++
T Consensus       107 ~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii  180 (200)
T d1sgwa_         107 IMDALESVEVLD-LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVII  180 (200)
T ss_dssp             HHHHHHHTTCCC-TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEE
T ss_pred             HHHHHHHcCCcc-cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            455667777655 3467889999999999999999999999999999999998777654 577777766554443

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=90.25  E-value=0.03  Score=55.18  Aligned_cols=26  Identities=23%  Similarity=0.420  Sum_probs=22.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGYRSN   88 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~~~~   88 (606)
                      .-+.|.||.|+|||||.+.+++++++
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             CeEEEECCCCccHHHHHHHHHHhCCC
Confidence            35789999999999999999998754

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.23  E-value=0.062  Score=48.20  Aligned_cols=21  Identities=24%  Similarity=0.385  Sum_probs=18.3

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++++|++|+|||||++.+.+-
T Consensus         6 vvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999877653

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.15  E-value=0.064  Score=47.73  Aligned_cols=20  Identities=40%  Similarity=0.710  Sum_probs=17.3

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g   84 (606)
                      +.++|++|+|||||++-+..
T Consensus         5 ivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999986654

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=89.62  E-value=0.064  Score=55.32  Aligned_cols=24  Identities=29%  Similarity=0.588  Sum_probs=21.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYRS   87 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~~   87 (606)
                      =+.++||+|+|||-|.+.||+...
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l~   74 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLAN   74 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999999764

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=89.52  E-value=0.097  Score=51.32  Aligned_cols=26  Identities=27%  Similarity=0.333  Sum_probs=22.4

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      |...+.++||+|+|||.|.+.|+...
T Consensus        51 p~~~~lf~Gp~GvGKT~lak~la~~l   76 (315)
T d1r6bx3          51 PVGSFLFAGPTGVGKTEVTVQLSKAL   76 (315)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCcchhHHHHHHHHhhc
Confidence            44478899999999999999999764

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=89.28  E-value=0.074  Score=51.06  Aligned_cols=22  Identities=32%  Similarity=0.487  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      -+||+|-+.+|||||+++|++-
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHCC
Confidence            4799999999999999999975

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=89.24  E-value=0.1  Score=48.32  Aligned_cols=22  Identities=27%  Similarity=0.448  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      .++||.|+-||||||..+.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999954

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=89.17  E-value=0.046  Score=51.65  Aligned_cols=14  Identities=0%  Similarity=0.050  Sum_probs=9.7

Q ss_pred             ccCCCCCCCCchhh
Q psy13765        167 FLDEPTTSNPNDQK  180 (606)
Q Consensus       167 ~~de~~~~~s~g~~  180 (606)
                      ..+++...+|||||
T Consensus       126 ~~~~~~~~lSgG~~  139 (238)
T d1vpla_         126 KIKDRVSTYSKGMV  139 (238)
T ss_dssp             GGGSBGGGCCHHHH
T ss_pred             HHhhhhhhCCHHHH
Confidence            35667777777775

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.14  E-value=0.095  Score=48.48  Aligned_cols=24  Identities=25%  Similarity=0.418  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      ++++|=|+-||||||+++.|+-..
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l   26 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHH
Confidence            478899999999999999998654

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=88.83  E-value=0.12  Score=46.95  Aligned_cols=27  Identities=22%  Similarity=0.489  Sum_probs=22.5

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCC
Q psy13765         61 SNQLIAIMGPSGAGKSSLLDVLSGYRS   87 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~~   87 (606)
                      |.=-+||+|.-.||||||++.|.|...
T Consensus         7 p~ini~iiGhVd~GKSTL~~~L~~~~~   33 (205)
T d2qn6a3           7 PEVNIGVVGHVDHGKTTLVQAITGIWT   33 (205)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred             CCeEEEEEEccCCcHHHHHHHHHhhhc
Confidence            443589999999999999999998643

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=88.54  E-value=0.11  Score=47.54  Aligned_cols=20  Identities=25%  Similarity=0.436  Sum_probs=18.4

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ++|+|..+||||||++.|.+
T Consensus         6 i~iiGhvd~GKSTL~~~Ll~   25 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALTY   25 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            79999999999999999964

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.43  E-value=0.1  Score=46.28  Aligned_cols=20  Identities=20%  Similarity=0.501  Sum_probs=18.0

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g   84 (606)
                      +.++|.+|+|||||++-+..
T Consensus         5 iv~lG~~~vGKTsll~r~~~   24 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRI   24 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            67999999999999998854

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.41  E-value=0.11  Score=45.77  Aligned_cols=20  Identities=20%  Similarity=0.506  Sum_probs=17.9

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q psy13765         65 IAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        65 ~aIiGpsGaGKSTLL~~L~g   84 (606)
                      +.++|..|+|||||++-+..
T Consensus         5 ivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            68999999999999998754

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.10  E-value=0.096  Score=48.62  Aligned_cols=22  Identities=32%  Similarity=0.437  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ++.|-|.=||||||||+-|...
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            6789999999999999988653

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=88.03  E-value=0.1  Score=52.31  Aligned_cols=28  Identities=25%  Similarity=0.424  Sum_probs=25.4

Q ss_pred             EeCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         59 FPSNQLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      ++++..+.+.||+|+||||+.++|++..
T Consensus       151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~  178 (362)
T d1svma_         151 IPKKRYWLFKGPIDSGKTTLAAALLELC  178 (362)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcCeEEEECCCCCCHHHHHHHHHHHc
Confidence            4678899999999999999999999864

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=87.86  E-value=0.12  Score=49.45  Aligned_cols=20  Identities=35%  Similarity=0.718  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy13765         64 LIAIMGPSGAGKSSLLDVLS   83 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~   83 (606)
                      -++|+|+.|+|||||...|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll   23 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALL   23 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHH
Confidence            47999999999999999983

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=86.82  E-value=0.14  Score=49.29  Aligned_cols=23  Identities=26%  Similarity=0.328  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHH---hCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVL---SGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L---~g~~   86 (606)
                      -+||+|..|||||||...|   +|..
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~   33 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRI   33 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCcc
Confidence            4799999999999999988   4544

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.53  E-value=0.19  Score=48.18  Aligned_cols=28  Identities=25%  Similarity=0.464  Sum_probs=24.6

Q ss_pred             EEEeCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765         57 GRFPSNQLIAIMGPSGAGKSSLLDVLSG   84 (606)
Q Consensus        57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L~g   84 (606)
                      ..+-+|+..+|.|++|+|||||+.-++.
T Consensus        63 ~pigkGQr~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          63 APYAKGGKIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence            4688999999999999999999877753

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=85.61  E-value=0.17  Score=51.08  Aligned_cols=21  Identities=38%  Similarity=0.629  Sum_probs=17.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLS   83 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~   83 (606)
                      +.+.|+|++|||||++++.|.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHH
Confidence            458999999999999987543

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=85.26  E-value=0.19  Score=49.35  Aligned_cols=28  Identities=25%  Similarity=0.551  Sum_probs=22.7

Q ss_pred             EEEeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765         57 GRFPSNQLIAIMGPSGAGKSSLLDVLSGY   85 (606)
Q Consensus        57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~   85 (606)
                      ...++| ++.+.||+|+|||.|.+.|++.
T Consensus       119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         119 HRYASG-MVIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEESE-EEEEECSSSSCHHHHHHHHHHH
T ss_pred             cccCCc-eEEEECCCCccHHHHHHHHHHH
Confidence            344555 6667899999999999999985

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.00  E-value=0.47  Score=41.48  Aligned_cols=57  Identities=23%  Similarity=0.185  Sum_probs=46.6

Q ss_pred             CcEEEEeCCCCCC--CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765        193 PRVMFLDEPTTGL--DSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG  250 (606)
Q Consensus       193 P~lllLDEPTsgL--D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~  250 (606)
                      .++++|||-...+  +--+..+++++|++ +.++.-+|+|-+++..++.+.+|.|.-|+.
T Consensus        95 ~dllILDEi~~Ai~~gli~~~~v~~ll~~-rp~~~evVlTGr~~p~~L~e~ADlVTEm~~  153 (157)
T d1g5ta_          95 LDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDLADTVSELRP  153 (157)
T ss_dssp             CSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred             cCEEeHHHHHHHHHcCCCCHHHHHHHHHh-CCCCCEEEEECCCCCHHHHHhcceeeeeee
Confidence            8999999988753  44566778888864 345789999999999999999999988863

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=83.59  E-value=0.28  Score=46.88  Aligned_cols=24  Identities=25%  Similarity=0.329  Sum_probs=20.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Q psy13765         63 QLIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        63 e~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      .-+.|+||+|.|||++..-++.+.
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHH
Confidence            356799999999999999998764

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=82.60  E-value=0.33  Score=47.29  Aligned_cols=40  Identities=20%  Similarity=0.262  Sum_probs=28.0

Q ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCc
Q psy13765         60 PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH   99 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~   99 (606)
                      +|.-.+.++||+|+|||.|.+.|+.........-+.+|..
T Consensus        51 kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~   90 (315)
T d1qvra3          51 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT   90 (315)
T ss_dssp             SCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTT
T ss_pred             CCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEecc
Confidence            3444678999999999999999997643212344556553

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=82.58  E-value=0.23  Score=47.15  Aligned_cols=16  Identities=19%  Similarity=0.515  Sum_probs=13.4

Q ss_pred             EEEEECCCCCCHHHHH
Q psy13765         64 LIAIMGPSGAGKSSLL   79 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL   79 (606)
                      -+.|.|+.||||||.|
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            3679999999999754

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=82.15  E-value=0.35  Score=43.85  Aligned_cols=23  Identities=22%  Similarity=0.426  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q psy13765         64 LIAIMGPSGAGKSSLLDVLSGYR   86 (606)
Q Consensus        64 ~~aIiGpsGaGKSTLL~~L~g~~   86 (606)
                      -..|+||+|.|||++..-|+.+.
T Consensus        45 n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHHH
Confidence            46899999999999999998764

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=81.92  E-value=0.3  Score=47.48  Aligned_cols=20  Identities=30%  Similarity=0.551  Sum_probs=17.7

Q ss_pred             eCCeEEEEECCCCCCHHHHH
Q psy13765         60 PSNQLIAIMGPSGAGKSSLL   79 (606)
Q Consensus        60 ~~Ge~~aIiGpsGaGKSTLL   79 (606)
                      +.|++....|.||+|||||=
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            46899999999999999973

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=81.65  E-value=0.25  Score=47.38  Aligned_cols=26  Identities=23%  Similarity=0.548  Sum_probs=18.9

Q ss_pred             ccccceeeeEEEeCCeEEEEECCCCCCHHHHH
Q psy13765         48 PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL   79 (606)
Q Consensus        48 ~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL   79 (606)
                      .+.++++.     +|- +.|.|+.||||||.|
T Consensus        16 Q~~~v~~~-----~g~-~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          16 QQEAVRTT-----EGP-LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             HHHHHHCC-----SSC-EEEEECTTSCHHHHH
T ss_pred             HHHHHhCC-----CCC-EEEEecCCccHHHHH
Confidence            44577653     344 679999999999765

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=80.98  E-value=0.3  Score=47.62  Aligned_cols=18  Identities=33%  Similarity=0.661  Sum_probs=16.8

Q ss_pred             CCeEEEEECCCCCCHHHH
Q psy13765         61 SNQLIAIMGPSGAGKSSL   78 (606)
Q Consensus        61 ~Ge~~aIiGpsGaGKSTL   78 (606)
                      .|++....|.||+|||||
T Consensus        13 ~~~valffGLSGTGKTTL   30 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTL   30 (318)
T ss_dssp             TCCEEEEEECTTSCHHHH
T ss_pred             CCCEEEEEccCCCCcccc
Confidence            588999999999999997