Psyllid ID: psy13769

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-----
Protein Sequence
MHLPSSKSPEMSSSIEAMTSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDGPREPRSKS
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHcHHHHHHHHHHHHHccccccccccccEEEEccccccccccccccccEEEEEEcccccEEEEEEEccccccEEEccHHHHHHHccccccccEEEEcccccccccEEEEEEEcccHHHHHHHcEEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHccccccHHHHHHHHHHHHcccccEEcccccEEEcccccEEEcccccccccEEEEccccccccEEEEEEEccccccEcEEccEEEEEccEEEccccEEcccccccccEEEEEEEcccccEEEEccccEEEEccccccccccc
Coil and Loop (DISEMBL)
mhlpsskspemsssIEAMTSDMFAGIHEALQEYHGelvqtgsptilcsvlpthwrsnkslpiaFKVVVLDDVMDGTIVTIragnddnycgelrNCTAVVKNQVakfndlrfvgrsgrgksFTLSImvgssphqiASYNKAIkvtvdgpreprsks
Flexible Loop (DISEMBL)
mhlpsskspemsSSIEAMTSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIragnddnycgELRNCTAVVKNQvakfndlrfvgrsgrGKSFTLSIMVGssphqiasynkaikvtvdgpreprsks
Low Complexity Region (SEG)
MHLPsskspemsssIEAMTSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDGPREPRSKS
Disordered region (IsUnstruct)
*********************MFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIK*************
Disordered Region (DISOPRED)
*********************MFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVT***********
Disordered Region (DISEMBL)
*************SIEAMTSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTV**********
Disordered Region (DISPRO)
******************TSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHLPSSKSPEMSSSIEAMTSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDGPREPRSKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	155	2.2.26 [Sep-21-2011]
P22814	510	Segmentation protein Runt	yes	N/A	0.941	0.286	0.746	1e-64
Q03347	451	Runt-related transcriptio	yes	N/A	0.806	0.277	0.72	2e-51
Q01196	453	Runt-related transcriptio	yes	N/A	0.806	0.275	0.72	2e-51
Q63046	450	Runt-related transcriptio	yes	N/A	0.806	0.277	0.72	2e-51
Q9W349	826	Protein lozenge OS=Drosop	no	N/A	0.838	0.157	0.707	2e-50
Q64131	409	Runt-related transcriptio	no	N/A	0.806	0.305	0.704	3e-50
Q13761	415	Runt-related transcriptio	no	N/A	0.806	0.301	0.704	3e-50
Q6PF39	462	Runt-related transcriptio	N/A	N/A	0.806	0.270	0.704	4e-50
Q13950	521	Runt-related transcriptio	no	N/A	0.806	0.239	0.688	5e-49
Q08775	607	Runt-related transcriptio	no	N/A	0.806	0.205	0.688	8e-49

>sp|P22814|RUNT_DROME Segmentation protein Runt OS=Drosophila melanogaster GN=run PE=2 SV=2

 Score =  244 bits (624), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 109/146 (74%), Positives = 126/146 (86%)

Query: 9   PEMSSSIEAMTSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVV 68
           P+ S+ + +  +DMFA +HE LQEYHGEL QTGSP+ILCS LP HWRSNKSLP AFKV+ 
Sbjct: 90  PQNSAKMPSSMTDMFASLHEMLQEYHGELAQTGSPSILCSALPNHWRSNKSLPGAFKVIA 149

Query: 69  LDDVMDGTIVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVG 128
           LDDV DGT+V+I+ GND+NYCGELRNCT  +KNQVAKFNDLRFVGRSGRGKSFTL+I + 
Sbjct: 150 LDDVPDGTLVSIKCGNDENYCGELRNCTTTMKNQVAKFNDLRFVGRSGRGKSFTLTITIA 209

Query: 129 SSPHQIASYNKAIKVTVDGPREPRSK 154
           + P QIASY+KAIKVTVDGPREPRSK
Sbjct: 210 TYPVQIASYSKAIKVTVDGPREPRSK 235

Plays a pivotal role in regulating the expression of other pair-rule genes such as eve, ftz, and h.
Drosophila melanogaster (taxid: 7227)

>sp|Q03347|RUNX1_MOUSE Runt-related transcription factor 1 OS=Mus musculus GN=Runx1 PE=1 SV=1

 Score =  201 bits (510), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 90/125 (72%), Positives = 107/125 (85%)

Query: 28  EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
           E L ++ GELV+T SP  LCSVLPTHWR NK+LPIAFKVV L DV DGT+VT+ AGND+N
Sbjct: 53  EVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDEN 112

Query: 88  YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
           Y  ELRN TA +KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TVDG
Sbjct: 113 YSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDG 172

Query: 148 PREPR 152
           PREPR
Sbjct: 173 PREPR 177

CBF binds to the core site, 5'-PYGPYGGT-3', of a number of enhancers and promoters, including murine leukemia virus, polyomavirus enhancer, T-cell receptor enhancers, LCK, IL-3 and GM-CSF promoters. Essential for the development of normal hematopoiesis. Isoform 4 shows higher binding activities for target genes and binds TCR-beta-E2 and RAG-1 target site with threefold higher affinity than other isoforms. It is less effective in the context of neutrophil terminal differentiation. Acts synergistically with ELF4 to transactivate the IL-3 promoter and with ELF2 to transactivate the BLK promoter. Inhibits KAT6B-dependent transcriptional activation.

Mus musculus (taxid: 10090)

>sp|Q01196|RUNX1_HUMAN Runt-related transcription factor 1 OS=Homo sapiens GN=RUNX1 PE=1 SV=3

 Score =  200 bits (509), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 90/125 (72%), Positives = 107/125 (85%)

Query: 28  EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
           E L ++ GELV+T SP  LCSVLPTHWR NK+LPIAFKVV L DV DGT+VT+ AGND+N
Sbjct: 53  EVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDEN 112

Query: 88  YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
           Y  ELRN TA +KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TVDG
Sbjct: 113 YSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDG 172

Query: 148 PREPR 152
           PREPR
Sbjct: 173 PREPR 177

CBF binds to the core site, 5'-PYGPYGGT-3', of a number of enhancers and promoters, including murine leukemia virus, polyomavirus enhancer, T-cell receptor enhancers, LCK, IL-3 and GM-CSF promoters. The alpha subunit binds DNA and appears to have a role in the development of normal hematopoiesis. Isoform AML-1L interferes with the transactivation activity of RUNX1. Acts synergistically with ELF4 to transactivate the IL-3 promoter and with ELF2 to transactivate the mouse BLK promoter. Inhibits KAT6B-dependent transcriptional activation.

Homo sapiens (taxid: 9606)

>sp|Q63046|RUNX1_RAT Runt-related transcription factor 1 OS=Rattus norvegicus GN=Runx1 PE=2 SV=1

 Score =  200 bits (509), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 90/125 (72%), Positives = 107/125 (85%)

Query: 28  EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
           E L ++ GELV+T SP  LCSVLPTHWR NK+LPIAFKVV L DV DGT+VT+ AGND+N
Sbjct: 53  EVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDEN 112

Query: 88  YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
           Y  ELRN TA +KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TVDG
Sbjct: 113 YSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDG 172

Query: 148 PREPR 152
           PREPR
Sbjct: 173 PREPR 177

CBF binds to the core site, 5'-PYGPYGGT-3', of a number of enhancers and promoters, including murine leukemia virus, polyomavirus enhancer, T-cell receptor enhancers, LCK, IL-3 and GM-CSF promoters. The alpha subunit binds DNA and appears to have a role in the development of normal hematopoiesis. Inhibits KAT6B-dependent transcriptional activation.

Rattus norvegicus (taxid: 10116)

>sp|Q9W349|LOZEN_DROME Protein lozenge OS=Drosophila melanogaster GN=lz PE=2 SV=2

 Score =  197 bits (502), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 92/130 (70%), Positives = 107/130 (82%)

Query: 26  IHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGND 85
           + +  QE+ GELV+T +P  LCS LP HWRSNK+LP+AFKVV L +V DGT VTIRAGND
Sbjct: 276 VQKRQQEHPGELVRTSNPYFLCSALPAHWRSNKTLPMAFKVVALAEVGDGTYVTIRAGND 335

Query: 86  DNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTV 145
           +N C ELRN T  +KN VAKFNDLRFVGRSGRGKSFTL+I V +SP Q+A+Y KAIKVTV
Sbjct: 336 ENCCAELRNFTTQMKNDVAKFNDLRFVGRSGRGKSFTLTITVATSPPQVATYAKAIKVTV 395

Query: 146 DGPREPRSKS 155
           DGPREPRSK+
Sbjct: 396 DGPREPRSKT 405

Involved in prepatterning photoreceptor precursors in the developing eye; in the larval eye disk it defines a subset of cells as an equipotential group that is competent to respond to the sevenless developmental signal and another subset that confer proper photoreceptor identity by positively regulating the homeo box gene Bar. Involved in the aop/pnt dynamic in a Ras-dependent manner to regulate pros expression. Promotes apoptosis in the pupal eye by directly activating aos and klu. Also modulates hid-and rpr-mediated cell death. Regulates amos function in olfactory sensilla development.

Drosophila melanogaster (taxid: 7227)

>sp|Q64131|RUNX3_MOUSE Runt-related transcription factor 3 OS=Mus musculus GN=Runx3 PE=2 SV=3

 Score =  197 bits (500), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 88/125 (70%), Positives = 108/125 (86%)

Query: 28  EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
           + L ++ GELV+T SP  LCSVLP+HWR NK+LP+AFKVV L DV DGT+VT+ AGND+N
Sbjct: 58  DVLADHAGELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGDVPDGTVVTVMAGNDEN 117

Query: 88  YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
           Y  ELRN +AV+KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIKVTVDG
Sbjct: 118 YSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPTQVATYHRAIKVTVDG 177

Query: 148 PREPR 152
           PREPR
Sbjct: 178 PREPR 182

Binds to the core site of murine Leukemia virus, the core sequences in the enhancer of the polyomavirus, and also to the enhancers of the T-cell receptor genes. May be involved in the control of cellular proliferation and/or differentiation.

Mus musculus (taxid: 10090)

>sp|Q13761|RUNX3_HUMAN Runt-related transcription factor 3 OS=Homo sapiens GN=RUNX3 PE=1 SV=2

 Score =  196 bits (499), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 88/125 (70%), Positives = 108/125 (86%)

Query: 28  EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
           + L ++ GELV+T SP  LCSVLP+HWR NK+LP+AFKVV L DV DGT+VT+ AGND+N
Sbjct: 57  DVLADHAGELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGDVPDGTVVTVMAGNDEN 116

Query: 88  YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
           Y  ELRN +AV+KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIKVTVDG
Sbjct: 117 YSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPTQVATYHRAIKVTVDG 176

Query: 148 PREPR 152
           PREPR
Sbjct: 177 PREPR 181

CBF binds to the core site, 5'-PYGPYGGT-3', of a number of enhancers and promoters, including murine leukemia virus, polyomavirus enhancer, T-cell receptor enhancers, lck, IL-3 and GM-CSF promoters.

Homo sapiens (taxid: 9606)

>sp|Q6PF39|RUNX1_XENLA Runt-related transcription factor 1 OS=Xenopus laevis GN=runx1 PE=2 SV=2

 Score =  196 bits (498), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 88/125 (70%), Positives = 107/125 (85%)

Query: 28  EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
           E L ++ GELV+T SP  LCSVLPTHWR NK+LPIAFKVV L +V DGT+VT+ AGND+N
Sbjct: 53  EVLSDHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGEVPDGTLVTVMAGNDEN 112

Query: 88  YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
           Y  ELRN TA +K+QVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TVDG
Sbjct: 113 YSAELRNATAAMKSQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDG 172

Query: 148 PREPR 152
           PREPR
Sbjct: 173 PREPR 177

Involved in primitive hematopoiesis in the embryo.

Xenopus laevis (taxid: 8355)

>sp|Q13950|RUNX2_HUMAN Runt-related transcription factor 2 OS=Homo sapiens GN=RUNX2 PE=1 SV=2

 Score =  192 bits (489), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 86/125 (68%), Positives = 107/125 (85%)

Query: 28  EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
           E + ++  ELV+T SP  LCSVLP+HWR NK+LP+AFKVV L +V DGT+VT+ AGND+N
Sbjct: 104 EIIADHPAELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGEVPDGTVVTVMAGNDEN 163

Query: 88  YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
           Y  ELRN +AV+KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIKVTVDG
Sbjct: 164 YSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKVTVDG 223

Query: 148 PREPR 152
           PREPR
Sbjct: 224 PREPR 228

Transcription factor involved in osteoblastic differentiation and skeletal morphogenesis. Essential for the maturation of osteoblasts and both intramembranous and endochondral ossification. CBF binds to the core site, 5'-PYGPYGGT-3', of a number of enhancers and promoters, including murine leukemia virus, polyomavirus enhancer, T-cell receptor enhancers, osteocalcin, osteopontin, bone sialoprotein, alpha 1(I) collagen, LCK, IL-3 and GM-CSF promoters. In osteoblasts, supports transcription activation: synergizes with SPEN/MINT to enhance FGFR2-mediated activation of the osteocalcin FGF-responsive element (OCFRE) (By similarity). Inhibits KAT6B-dependent transcriptional activation.

Homo sapiens (taxid: 9606)

>sp|Q08775|RUNX2_MOUSE Runt-related transcription factor 2 OS=Mus musculus GN=Runx2 PE=1 SV=2

 Score =  192 bits (487), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 86/125 (68%), Positives = 107/125 (85%)

Query: 28  EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
           E + ++  ELV+T SP  LCSVLP+HWR NK+LP+AFKVV L +V DGT+VT+ AGND+N
Sbjct: 190 EIIADHPAELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGEVPDGTVVTVMAGNDEN 249

Query: 88  YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
           Y  ELRN +AV+KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIKVTVDG
Sbjct: 250 YSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKVTVDG 309

Query: 148 PREPR 152
           PREPR
Sbjct: 310 PREPR 314

Transcription factor involved in osteoblastic differentiation and skeletal morphogenesis. Essential for the maturation of osteoblasts and both intramembranous and endochondral ossification. CBF binds to the core site, 5'-PYGPYGGT-3', of a number of enhancers and promoters, including murine leukemia virus, polyomavirus enhancer, T-cell receptor enhancers, osteocalcin, osteopontin, bone sialoprotein, alpha 1(I) collagen, LCK, IL-3 and GM-CSF promoters. Inhibits KAT6B-dependent transcriptional activation (By similarity). In osteoblasts, supports transcription activation: synergizes with SPEN/MINT to enhance FGFR2-mediated activation of the osteocalcin FGF-responsive element (OCFRE).

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
242013867	407	runt, putative [Pediculus humanus corpor	0.961	0.366	0.743	5e-64
312378660	698	hypothetical protein AND_09737 [Anophele	0.967	0.214	0.711	1e-63
91089031	369	PREDICTED: similar to runt CG1849-PA [Tr	0.948	0.398	0.732	6e-63
3348024	509	runt [Drosophila simulans]	0.941	0.286	0.746	7e-63
24643559	510	runt, isoform A [Drosophila melanogaster	0.941	0.286	0.746	7e-63
3348032	510	runt [Drosophila melanogaster]	0.941	0.286	0.746	7e-63
195567901	510	runt [Drosophila simulans] gi|194204904|	0.941	0.286	0.746	7e-63
3348042	507	runt [Drosophila melanogaster]	0.941	0.287	0.746	7e-63
3348004	509	runt [Drosophila simulans] gi|3348006|gb	0.941	0.286	0.746	8e-63
195346027	510	GM23050 [Drosophila sechellia] gi|194134	0.941	0.286	0.746	8e-63

>gi|242013867|ref|XP_002427622.1| runt, putative [Pediculus humanus corporis] gi|212512037|gb|EEB14884.1| runt, putative [Pediculus humanus corporis]

 Score =  248 bits (634), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 116/156 (74%), Positives = 134/156 (85%), Gaps = 7/156 (4%)

Query: 1   MHLPSSKSPEMSSSIEAMT-SDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKS 59
           MHLPS +         AM  +D+F+ +HE LQEYHGELVQTGSP ILCS LP HWRSNKS
Sbjct: 1   MHLPSPRD------RAAMAGTDLFSNVHEILQEYHGELVQTGSPAILCSALPNHWRSNKS 54

Query: 60  LPIAFKVVVLDDVMDGTIVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGK 119
           LPIAFKVV LDDV+DGT+VTIR GND+N+CGELRNCTAV+KNQVAKFNDLRFVGRSGRGK
Sbjct: 55  LPIAFKVVALDDVVDGTLVTIRCGNDENFCGELRNCTAVMKNQVAKFNDLRFVGRSGRGK 114

Query: 120 SFTLSIMVGSSPHQIASYNKAIKVTVDGPREPRSKS 155
           SF+L+I++ S+P QIA+Y KAIKVTVDGPREPR+K+
Sbjct: 115 SFSLTILISSTPFQIATYAKAIKVTVDGPREPRTKT 150

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312378660|gb|EFR25174.1| hypothetical protein AND_09737 [Anopheles darlingi]

 Score =  247 bits (631), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 116/163 (71%), Positives = 133/163 (81%), Gaps = 13/163 (7%)

Query: 1   MHLPSS---------KSPEMSSSIEAMTSDMFAGIHEALQEYHGELVQTGSPTILCSVLP 51
           MHLP+S         +SP M ++I     DMFA +HE LQEYHGELVQTGSP +LCS LP
Sbjct: 1   MHLPASTATAAQSDCQSPSMPTTIN----DMFANLHEMLQEYHGELVQTGSPAVLCSALP 56

Query: 52  THWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRF 111
           THWRSNKSLP AFKV+ LDD+ DGT+VTI+AGND+NY  ELRNCTAV+KNQVAKFNDLRF
Sbjct: 57  THWRSNKSLPCAFKVIALDDIQDGTLVTIKAGNDENYHAELRNCTAVMKNQVAKFNDLRF 116

Query: 112 VGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDGPREPRSK 154
           VGRSGRGKSF+++I + S P QIA+Y KAIKVTVDGPREPRSK
Sbjct: 117 VGRSGRGKSFSITITISSYPCQIATYTKAIKVTVDGPREPRSK 159

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91089031|ref|XP_969277.1| PREDICTED: similar to runt CG1849-PA [Tribolium castaneum] gi|270012809|gb|EFA09257.1| runt [Tribolium castaneum]

 Score =  244 bits (624), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 115/157 (73%), Positives = 133/157 (84%), Gaps = 10/157 (6%)

Query: 1   MHLP-SSKSPEMSSSIEAMTSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKS 59
           MHLP +++ P +         DM+A + E LQEYHGELVQTGSP +LCSVLP+HWRSNKS
Sbjct: 1   MHLPINAQQPSIM--------DMYASLQETLQEYHGELVQTGSPAVLCSVLPSHWRSNKS 52

Query: 60  LPIAFKVVVLDDVMDGTIVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGK 119
           LPIAFKVV LD+V DGT VT++AGND+NYC ELRNCTAV+KNQVAKFNDLRFVGRSGRGK
Sbjct: 53  LPIAFKVVALDEVRDGTTVTLKAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGK 112

Query: 120 SFTLSIMVGSSP-HQIASYNKAIKVTVDGPREPRSKS 155
           SFTL+I + S P +QIA+YNKAIKVTVDGPREPR+KS
Sbjct: 113 SFTLTITISSEPYYQIATYNKAIKVTVDGPREPRTKS 149

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|3348024|gb|AAC27775.1| runt [Drosophila simulans]

 Score =  244 bits (624), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 109/146 (74%), Positives = 126/146 (86%)

Query: 9   PEMSSSIEAMTSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVV 68
           P+ S+ + +  +DMFA +HE LQEYHGEL QTGSP+ILCS LP HWRSNKSLP AFKV+ 
Sbjct: 90  PQNSAKMPSSMTDMFASLHEMLQEYHGELAQTGSPSILCSALPNHWRSNKSLPGAFKVIA 149

Query: 69  LDDVMDGTIVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVG 128
           LDDV DGT+V+I+ GND+NYCGELRNCT  +KNQVAKFNDLRFVGRSGRGKSFTL+I + 
Sbjct: 150 LDDVPDGTLVSIKCGNDENYCGELRNCTTTMKNQVAKFNDLRFVGRSGRGKSFTLTITIA 209

Query: 129 SSPHQIASYNKAIKVTVDGPREPRSK 154
           + P QIASY+KAIKVTVDGPREPRSK
Sbjct: 210 TYPVQIASYSKAIKVTVDGPREPRSK 235

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24643559|ref|NP_523424.2| runt, isoform A [Drosophila melanogaster] gi|78099798|sp|P22814.2|RUNT_DROME RecName: Full=Segmentation protein Runt gi|7295575|gb|AAF50886.1| runt, isoform A [Drosophila melanogaster] gi|116875685|gb|ABK30894.1| FI01105p [Drosophila melanogaster]

 Score =  244 bits (624), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 109/146 (74%), Positives = 126/146 (86%)

Query: 9   PEMSSSIEAMTSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVV 68
           P+ S+ + +  +DMFA +HE LQEYHGEL QTGSP+ILCS LP HWRSNKSLP AFKV+ 
Sbjct: 90  PQNSAKMPSSMTDMFASLHEMLQEYHGELAQTGSPSILCSALPNHWRSNKSLPGAFKVIA 149

Query: 69  LDDVMDGTIVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVG 128
           LDDV DGT+V+I+ GND+NYCGELRNCT  +KNQVAKFNDLRFVGRSGRGKSFTL+I + 
Sbjct: 150 LDDVPDGTLVSIKCGNDENYCGELRNCTTTMKNQVAKFNDLRFVGRSGRGKSFTLTITIA 209

Query: 129 SSPHQIASYNKAIKVTVDGPREPRSK 154
           + P QIASY+KAIKVTVDGPREPRSK
Sbjct: 210 TYPVQIASYSKAIKVTVDGPREPRSK 235

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|3348032|gb|AAC27779.1| runt [Drosophila melanogaster]

 Score =  244 bits (624), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 109/146 (74%), Positives = 126/146 (86%)

Query: 9   PEMSSSIEAMTSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVV 68
           P+ S+ + +  +DMFA +HE LQEYHGEL QTGSP+ILCS LP HWRSNKSLP AFKV+ 
Sbjct: 90  PQNSAKMPSSMTDMFASLHEMLQEYHGELAQTGSPSILCSALPNHWRSNKSLPGAFKVIA 149

Query: 69  LDDVMDGTIVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVG 128
           LDDV DGT+V+I+ GND+NYCGELRNCT  +KNQVAKFNDLRFVGRSGRGKSFTL+I + 
Sbjct: 150 LDDVPDGTLVSIKCGNDENYCGELRNCTTTMKNQVAKFNDLRFVGRSGRGKSFTLTITIA 209

Query: 129 SSPHQIASYNKAIKVTVDGPREPRSK 154
           + P QIASY+KAIKVTVDGPREPRSK
Sbjct: 210 TYPVQIASYSKAIKVTVDGPREPRSK 235

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195567901|ref|XP_002107496.1| runt [Drosophila simulans] gi|194204904|gb|EDX18480.1| runt [Drosophila simulans]

 Score =  244 bits (624), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 109/146 (74%), Positives = 126/146 (86%)

Query: 9   PEMSSSIEAMTSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVV 68
           P+ S+ + +  +DMFA +HE LQEYHGEL QTGSP+ILCS LP HWRSNKSLP AFKV+ 
Sbjct: 90  PQNSAKMPSSMTDMFASLHEMLQEYHGELAQTGSPSILCSALPNHWRSNKSLPGAFKVIA 149

Query: 69  LDDVMDGTIVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVG 128
           LDDV DGT+V+I+ GND+NYCGELRNCT  +KNQVAKFNDLRFVGRSGRGKSFTL+I + 
Sbjct: 150 LDDVPDGTLVSIKCGNDENYCGELRNCTTTMKNQVAKFNDLRFVGRSGRGKSFTLTITIA 209

Query: 129 SSPHQIASYNKAIKVTVDGPREPRSK 154
           + P QIASY+KAIKVTVDGPREPRSK
Sbjct: 210 TYPVQIASYSKAIKVTVDGPREPRSK 235

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|3348042|gb|AAC27784.1| runt [Drosophila melanogaster]

 Score =  244 bits (624), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 109/146 (74%), Positives = 126/146 (86%)

Query: 9   PEMSSSIEAMTSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVV 68
           P+ S+ + +  +DMFA +HE LQEYHGEL QTGSP+ILCS LP HWRSNKSLP AFKV+ 
Sbjct: 90  PQNSAKMPSSMTDMFASLHEMLQEYHGELAQTGSPSILCSALPNHWRSNKSLPGAFKVIA 149

Query: 69  LDDVMDGTIVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVG 128
           LDDV DGT+V+I+ GND+NYCGELRNCT  +KNQVAKFNDLRFVGRSGRGKSFTL+I + 
Sbjct: 150 LDDVPDGTLVSIKCGNDENYCGELRNCTTTMKNQVAKFNDLRFVGRSGRGKSFTLTITIA 209

Query: 129 SSPHQIASYNKAIKVTVDGPREPRSK 154
           + P QIASY+KAIKVTVDGPREPRSK
Sbjct: 210 TYPVQIASYSKAIKVTVDGPREPRSK 235

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|3348004|gb|AAC27765.1| runt [Drosophila simulans] gi|3348006|gb|AAC27766.1| runt [Drosophila simulans] gi|3348008|gb|AAC27767.1| runt [Drosophila simulans] gi|3348010|gb|AAC27768.1| runt [Drosophila simulans] gi|3348012|gb|AAC27769.1| runt [Drosophila simulans] gi|3348014|gb|AAC27770.1| runt [Drosophila simulans] gi|3348016|gb|AAC27771.1| runt [Drosophila simulans] gi|3348018|gb|AAC27772.1| runt [Drosophila simulans] gi|3348020|gb|AAC27773.1| runt [Drosophila simulans] gi|3348022|gb|AAC27774.1| runt [Drosophila simulans]

 Score =  244 bits (624), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 109/146 (74%), Positives = 126/146 (86%)

Query: 9   PEMSSSIEAMTSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVV 68
           P+ S+ + +  +DMFA +HE LQEYHGEL QTGSP+ILCS LP HWRSNKSLP AFKV+ 
Sbjct: 90  PQNSAKMPSSMTDMFASLHEMLQEYHGELAQTGSPSILCSALPNHWRSNKSLPGAFKVIA 149

Query: 69  LDDVMDGTIVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVG 128
           LDDV DGT+V+I+ GND+NYCGELRNCT  +KNQVAKFNDLRFVGRSGRGKSFTL+I + 
Sbjct: 150 LDDVPDGTLVSIKCGNDENYCGELRNCTTTMKNQVAKFNDLRFVGRSGRGKSFTLTITIA 209

Query: 129 SSPHQIASYNKAIKVTVDGPREPRSK 154
           + P QIASY+KAIKVTVDGPREPRSK
Sbjct: 210 TYPVQIASYSKAIKVTVDGPREPRSK 235

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195346027|ref|XP_002039570.1| GM23050 [Drosophila sechellia] gi|194134796|gb|EDW56312.1| GM23050 [Drosophila sechellia]

 Score =  244 bits (623), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 109/146 (74%), Positives = 126/146 (86%)

Query: 9   PEMSSSIEAMTSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVV 68
           P+ S+ + +  +DMFA +HE LQEYHGEL QTGSP+ILCS LP HWRSNKSLP AFKV+ 
Sbjct: 90  PQNSAKMPSSMTDMFASLHEMLQEYHGELAQTGSPSILCSALPNHWRSNKSLPGAFKVIA 149

Query: 69  LDDVMDGTIVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVG 128
           LDDV DGT+V+I+ GND+NYCGELRNCT  +KNQVAKFNDLRFVGRSGRGKSFTL+I + 
Sbjct: 150 LDDVPDGTLVSIKCGNDENYCGELRNCTTTMKNQVAKFNDLRFVGRSGRGKSFTLTITIA 209

Query: 129 SSPHQIASYNKAIKVTVDGPREPRSK 154
           + P QIASY+KAIKVTVDGPREPRSK
Sbjct: 210 TYPVQIASYSKAIKVTVDGPREPRSK 235

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
FB|FBgn0003300	510	run "runt" [Drosophila melanog	0.883	0.268	0.789	1.6e-56
FB|FBgn0083981	658	RunxA [Drosophila melanogaster	0.890	0.209	0.721	1.2e-51
FB|FBgn0259162	663	RunxB [Drosophila melanogaster	0.806	0.188	0.792	1.2e-51
UNIPROTKB|Q90813	408	Gga.45609 "Ch-runtB2" [Gallus	0.812	0.308	0.714	4.8e-46
UNIPROTKB|F5H139	191	RUNX1 "Runt-related transcript	0.812	0.659	0.714	4.8e-46
UNIPROTKB|H9KVB1	389	RUNX1 "Runt-related transcript	0.812	0.323	0.714	4.8e-46
ZFIN|ZDB-GENE-000605-1	451	runx1 "runt-related transcript	0.806	0.277	0.712	4.8e-46
UNIPROTKB|E2RJJ8	479	RUNX1 "Uncharacterized protein	0.806	0.260	0.72	6.2e-46
UNIPROTKB|E2RJK5	467	RUNX1 "Uncharacterized protein	0.806	0.267	0.72	6.2e-46
UNIPROTKB|A8MZI9	256	RUNX1 "Runt-related transcript	0.806	0.488	0.72	6.2e-46

FB|FBgn0003300 run "runt" [Drosophila melanogaster (taxid:7227)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 109/138 (78%), Positives = 122/138 (88%)

Query:    17 AMTSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGT 76
             +MT DMFA +HE LQEYHGEL QTGSP+ILCS LP HWRSNKSLP AFKV+ LDDV DGT
Sbjct:    99 SMT-DMFASLHEMLQEYHGELAQTGSPSILCSALPNHWRSNKSLPGAFKVIALDDVPDGT 157

Query:    77 IVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIAS 136
             +V+I+ GND+NYCGELRNCT  +KNQVAKFNDLRFVGRSGRGKSFTL+I + + P QIAS
Sbjct:   158 LVSIKCGNDENYCGELRNCTTTMKNQVAKFNDLRFVGRSGRGKSFTLTITIATYPVQIAS 217

Query:   137 YNKAIKVTVDGPREPRSK 154
             Y+KAIKVTVDGPREPRSK
Sbjct:   218 YSKAIKVTVDGPREPRSK 235

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0007540 "sex determination, establishment of X:A ratio" evidence=NAS;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA;NAS

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0007411 "axon guidance" evidence=IMP

GO:0007366 "periodic partitioning by pair rule gene" evidence=NAS;TAS

GO:0007419 "ventral cord development" evidence=TAS

GO:0007400 "neuroblast fate determination" evidence=TAS

GO:0005524 "ATP binding" evidence=IEA

GO:0007377 "germ-band extension" evidence=IMP;TAS

GO:0048592 "eye morphogenesis" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

FB|FBgn0083981 RunxA [Drosophila melanogaster (taxid:7227)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 101/140 (72%), Positives = 121/140 (86%)

Query:    18 MTSDMFAG--IHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDG 75
             MTSD+ A   + + L E+ GEL++T SP  +C+VLP HWRSNK+LP+AFKVV L D+MDG
Sbjct:    90 MTSDILAERTLGDFLTEHPGELIRTSSPLFVCTVLPPHWRSNKTLPVAFKVVSLGDIMDG 149

Query:    76 TIVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIA 135
             T+VT+RAGND+NYC ELRNCTAV+KNQVAKFNDLRFVGRSGRGKSFTL+I V ++P  IA
Sbjct:   150 TMVTVRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITVSTNPPHIA 209

Query:   136 SYNKAIKVTVDGPREPRSKS 155
             +YNKAIKVTVDGPREPRSK+
Sbjct:   210 TYNKAIKVTVDGPREPRSKT 229

GO:0005634 "nucleus" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

FB|FBgn0259162 RunxB [Drosophila melanogaster (taxid:7227)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 99/125 (79%), Positives = 116/125 (92%)

Query:    30 LQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDNYC 89
             L E+ GELV+TGSP ++C+ LPTHWRSNK+LPIAFKV+ L +VMDGTIVTIRAGND+N+C
Sbjct:   115 LAEHPGELVKTGSPHVVCTTLPTHWRSNKTLPIAFKVLALGEVMDGTIVTIRAGNDENFC 174

Query:    90 GELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDGPR 149
             GELRNCTAV+KNQVAKFNDLRFVGRSGRGKSFTL+I++ ++P QIA+Y KAIKVTVDGPR
Sbjct:   175 GELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTIVISTNPIQIATYTKAIKVTVDGPR 234

Query:   150 EPRSK 154
             EPRSK
Sbjct:   235 EPRSK 239

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0005634 "nucleus" evidence=IEA;IC;NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0009987 "cellular process" evidence=IMP

UNIPROTKB|Q90813 Gga.45609 "Ch-runtB2" [Gallus gallus (taxid:9031)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 90/126 (71%), Positives = 108/126 (85%)

Query:    28 EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
             E L ++ GELV+T SP  LCSVLPTHWR NK+LPIAFKVV L DV DGT+VT+ AGND+N
Sbjct:    66 EVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDEN 125

Query:    88 YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
             Y  ELRN TA +KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TVDG
Sbjct:   126 YSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDG 185

Query:   148 PREPRS 153
             PREPR+
Sbjct:   186 PREPRN 191

GO:0005524 "ATP binding" evidence=IEA

GO:0000975 "regulatory region DNA binding" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0002318 "myeloid progenitor cell differentiation" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007417 "central nervous system development" evidence=IEA

GO:0009966 "regulation of signal transduction" evidence=IEA

GO:0030099 "myeloid cell differentiation" evidence=IEA

GO:0030853 "negative regulation of granulocyte differentiation" evidence=IEA

GO:0030854 "positive regulation of granulocyte differentiation" evidence=IEA

GO:0031069 "hair follicle morphogenesis" evidence=IEA

GO:0035162 "embryonic hemopoiesis" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0048266 "behavioral response to pain" evidence=IEA

GO:0048666 "neuron development" evidence=IEA

GO:0060216 "definitive hemopoiesis" evidence=IEA

GO:0070491 "repressing transcription factor binding" evidence=IEA

GO:0071336 "regulation of hair follicle cell proliferation" evidence=IEA

UNIPROTKB|F5H139 RUNX1 "Runt-related transcription factor 1" [Homo sapiens (taxid:9606)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 90/126 (71%), Positives = 108/126 (85%)

Query:    28 EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
             E L ++ GELV+T SP  LCSVLPTHWR NK+LPIAFKVV L DV DGT+VT+ AGND+N
Sbjct:    56 EVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDEN 115

Query:    88 YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
             Y  ELRN TA +KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TVDG
Sbjct:   116 YSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDG 175

Query:   148 PREPRS 153
             PREPR+
Sbjct:   176 PREPRN 181

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|H9KVB1 RUNX1 "Runt-related transcription factor 1" [Homo sapiens (taxid:9606)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 90/126 (71%), Positives = 108/126 (85%)

Query:    28 EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
             E L ++ GELV+T SP  LCSVLPTHWR NK+LPIAFKVV L DV DGT+VT+ AGND+N
Sbjct:    53 EVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDEN 112

Query:    88 YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
             Y  ELRN TA +KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TVDG
Sbjct:   113 YSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDG 172

Query:   148 PREPRS 153
             PREPR+
Sbjct:   173 PREPRN 178

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-000605-1 runx1 "runt-related transcription factor 1" [Danio rerio (taxid:7955)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 89/125 (71%), Positives = 106/125 (84%)

Query:    28 EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
             E L ++ GELV+T SP  LCSVLPTHWR NK+LPIAFKVV L D+ DGT+VT+ AGND+N
Sbjct:    58 EVLSDHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDIPDGTLVTVMAGNDEN 117

Query:    88 YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
             Y  ELRN TA +KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y +AIK+TVDG
Sbjct:   118 YSAELRNATAAIKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYQRAIKITVDG 177

Query:   148 PREPR 152
             PREPR
Sbjct:   178 PREPR 182

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IGI;IMP

GO:0043565 "sequence-specific DNA binding" evidence=IPI

GO:0030099 "myeloid cell differentiation" evidence=IGI;IMP

GO:0035162 "embryonic hemopoiesis" evidence=IMP

GO:0007399 "nervous system development" evidence=IMP

GO:0001568 "blood vessel development" evidence=IMP

GO:0060216 "definitive hemopoiesis" evidence=IMP

GO:0030097 "hemopoiesis" evidence=IMP

UNIPROTKB|E2RJJ8 RUNX1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 90/125 (72%), Positives = 107/125 (85%)

Query:    28 EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
             E L ++ GELV+T SP  LCSVLPTHWR NK+LPIAFKVV L DV DGT+VT+ AGND+N
Sbjct:    79 EVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDEN 138

Query:    88 YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
             Y  ELRN TA +KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TVDG
Sbjct:   139 YSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDG 198

Query:   148 PREPR 152
             PREPR
Sbjct:   199 PREPR 203

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|E2RJK5 RUNX1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 90/125 (72%), Positives = 107/125 (85%)

Query:    28 EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
             E L ++ GELV+T SP  LCSVLPTHWR NK+LPIAFKVV L DV DGT+VT+ AGND+N
Sbjct:    67 EVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDEN 126

Query:    88 YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
             Y  ELRN TA +KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TVDG
Sbjct:   127 YSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDG 186

Query:   148 PREPR 152
             PREPR
Sbjct:   187 PREPR 191

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|A8MZI9 RUNX1 "Runt-related transcription factor 1" [Homo sapiens (taxid:9606)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 90/125 (72%), Positives = 107/125 (85%)

Query:    28 EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
             E L ++ GELV+T SP  LCSVLPTHWR NK+LPIAFKVV L DV DGT+VT+ AGND+N
Sbjct:    68 EVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDEN 127

Query:    88 YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
             Y  ELRN TA +KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TVDG
Sbjct:   128 YSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDG 187

Query:   148 PREPR 152
             PREPR
Sbjct:   188 PREPR 192

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P22814	RUNT_DROME	No assigned EC number	0.7465	0.9419	0.2862	yes	N/A
Q01196	RUNX1_HUMAN	No assigned EC number	0.72	0.8064	0.2759	yes	N/A
Q63046	RUNX1_RAT	No assigned EC number	0.72	0.8064	0.2777	yes	N/A
Q03347	RUNX1_MOUSE	No assigned EC number	0.72	0.8064	0.2771	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	155
pfam00853	134	pfam00853, Runt, Runt domain	1e-87

>gnl|CDD|109891 pfam00853, Runt, Runt domain

 Score =  251 bits (643), Expect = 1e-87
 Identities = 98/129 (75%), Positives = 114/129 (88%)

Query: 26  IHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGND 85
           + E L E+ GELV+TGSP  LCSVLP+HWRSNK+LP+AFKVV L +V DGT+VTIRAGND
Sbjct: 3   VVEVLAEHPGELVKTGSPNFLCSVLPSHWRSNKTLPVAFKVVALGEVPDGTMVTIRAGND 62

Query: 86  DNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTV 145
           +NYC ELRN TAV+KNQVAKFNDLRFVGRSGRGKSFTL+I + ++P Q+A+YNKAIKVTV
Sbjct: 63  ENYCAELRNATAVMKNQVAKFNDLRFVGRSGRGKSFTLTITIATNPPQVATYNKAIKVTV 122

Query: 146 DGPREPRSK 154
           DGPREPR K
Sbjct: 123 DGPREPRRK 131

Length = 134

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	155
PF00853	135	Runt: Runt domain; InterPro: IPR013524 The AML1 ge	100.0
KOG3982|consensus	475		100.0
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	89.06
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	84.2
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	83.19

>PF00853 Runt: Runt domain; InterPro: IPR013524 The AML1 gene is rearranged by the t(8;21) translocation in acute myeloid leukemia []

Probab=100.00  E-value=2e-93  Score=555.58  Aligned_cols=133  Identities=74%  Similarity=1.139  Sum_probs=116.8

Q ss_pred             HHHHHHHHhhhccceeecCCCcEEeecCCCccccCCCCCcceEEEEeecCCCCeEEEEeecCCCccchhcchhhhhhhcc
Q psy13769         23 FAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDNYCGELRNCTAVVKNQ  102 (155)
Q Consensus        23 ~~~~~~~l~~~~gelv~T~sP~~lCs~LP~HWRsNKtLP~~FkVvaL~~VpDGT~Vtv~AGNDEn~~aELRN~tavmknq  102 (155)
                      .|+++|+|+||+||||+||||+|+||+||+|||||||||.+||||||+||||||+|||+|||||||||||||++|+||||
T Consensus         1 er~~~~~l~~~~~~lv~T~sP~~lcs~LP~HWR~NKsLP~~FkVvalg~V~DGT~Vtv~AGNDEn~~aElRN~tavmknq   80 (135)
T PF00853_consen    1 ERTLHEALAEHPGELVRTDSPNFLCSVLPSHWRSNKSLPVAFKVVALGDVPDGTLVTVMAGNDENYCAELRNATAVMKNQ   80 (135)
T ss_dssp             ---HHHHHHHSTCCEEECSSTTEEEES-TSEEETTSS-SS-EEEEESSS-STTEEEEEEEEESSCSSBBEES-EEEEETT
T ss_pred             CccHHHHHHhCCcccccCCCCCEEeecccccccccCCCCCceeEEEEEEcCCCcEEEEEecCCchhhhhhhchhhhhhcc
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccceeeeeccCCCceeEEEEEEecCCceeeeeeeeeEEeeeCCCCCCCCC
Q psy13769        103 VAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDGPREPRSKS  155 (155)
Q Consensus       103 vA~FNDLRFvGRSGRGKsftltItv~t~Ppqvaty~~AIKVTVDGPRePR~k~  155 (155)
                      |||||||||||||||||||+|||+|+|+|||||||+||||||||||||||+|+
T Consensus        81 vA~FnDLRFvGRSGRGKsFtltItv~t~PpqvAty~~AIKVTVDGPRePR~~~  133 (135)
T PF00853_consen   81 VARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKVTVDGPREPRSKR  133 (135)
T ss_dssp             EEEESS-EECST-TTTSEEEEEEEE-SSS-EEEEECCEEEEESS-SSCCG---
T ss_pred             cccccccccccccCCccceEEEEEEeCCCchHHhheeeEEEEecCCCCCcccc
Confidence            99999999999999999999999999999999999999999999999999974

The gene is highly similar to the Drosophila melanogaster segmentation gene runt and to the mouse transcription factor PEBP2 alpha subunit gene []. The region of shared similarity, known as the Runt domain, is responsible for DNA-binding and protein-protein interaction. In addition to the highly-conserved Runt domain, the AML-1 gene product carries a putative ATP-binding site (GRSGRGKS), and has a C-terminal region rich in proline and serine residues. The protein (known as acute myeloid leukemia 1 protein, oncogene AML-1, core-binding factor (CBF), alpha-B subunit, etc.) binds to the core site, 5'-pygpyggt-3', of a number of enhancers and promoters. The protein is a heterodimer of alpha- and beta-subunits. The alpha-subunit binds DNA as a monomer, and appears to have a role in the development of normal hematopoiesis. CBF is a nuclear protein expressed in numerous tissue types, except brain and heart; highest levels have been found to occur in thymus, bone marrow and peripheral blood. This domain occurs towards the N terminus of the proteins in this entry.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1E50_E 1LJM_A 1CO1_A 1H9D_C 1CMO_A 1EAO_B 1HJC_D 1HJB_F 2J6W_B 1EAN_A ....

>KOG3982|consensus

Probab=100.00  E-value=4.2e-87  Score=591.08  Aligned_cols=134  Identities=75%  Similarity=1.154  Sum_probs=132.2

Q ss_pred             hHHHHHHHHHhhhccceeecCCCcEEeecCCCccccCCCCCcceEEEEeecCCCCeEEEEeecCCCccchhcchhhhhhh
Q psy13769         21 DMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDNYCGELRNCTAVVK  100 (155)
Q Consensus        21 ~~~~~~~~~l~~~~gelv~T~sP~~lCs~LP~HWRsNKtLP~~FkVvaL~~VpDGT~Vtv~AGNDEn~~aELRN~tavmk  100 (155)
                      .++|+|+|+|+|||||||+||||+||||+||+|||||||||+||||||||||||||+||||||||||||||||||+|+||
T Consensus        96 ~~~rt~~~~laehpgeLvrT~SPn~lcs~LP~HWRsNKtlp~aFkVvaLgdVpDgT~Vti~aGNDEnyc~ElRN~tA~mk  175 (475)
T KOG3982|consen   96 LVFRTVVEFLAEHPGELVRTSSPNFLCSVLPTHWRSNKTLPVAFKVVALGDVPDGTLVTIMAGNDENYCAELRNCTAVMK  175 (475)
T ss_pred             hhHHHHHHHHHhCccceeecCCCceeeecCcchhccCCcccceeEEEEecccCCCcEEEEEecCCcchhHHhhhhHHHHH
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccceeeeeccCCCceeEEEEEEecCCceeeeeeeeeEEeeeCCCCCC-CC
Q psy13769        101 NQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDGPREPR-SK  154 (155)
Q Consensus       101 nqvA~FNDLRFvGRSGRGKsftltItv~t~Ppqvaty~~AIKVTVDGPRePR-~k  154 (155)
                      |||||||||||||||||||||||||+|+|+|+|||||+|||||||||||||| +|
T Consensus       176 nQVAkFNDLRFVGRSGRGKsFtLTIti~TnP~qvATy~kaIKVTVDGPRepRr~K  230 (475)
T KOG3982|consen  176 NQVAKFNDLRFVGRSGRGKSFTLTITIFTNPPQVATYHKAIKVTVDGPREPRRSK  230 (475)
T ss_pred             hhhhhhccceeecccCCCcceEEEEEEecCCcceeeeeceEEEeccCCCcccccc
Confidence            9999999999999999999999999999999999999999999999999999 44

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=89.06  E-value=2.4  Score=35.48  Aligned_cols=104  Identities=18%  Similarity=0.297  Sum_probs=64.5

Q ss_pred             cchhHHHHHHHHHhhhccceeecCCCcEEeecCCCccccCCCCCcceEEEEeec--CCCCe-EEEEeecCCCccchh---
Q psy13769         18 MTSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDD--VMDGT-IVTIRAGNDDNYCGE---   91 (155)
Q Consensus        18 ~~~~~~~~~~~~l~~~~gelv~T~sP~~lCs~LP~HWRsNKtLP~~FkVvaL~~--VpDGT-~Vtv~AGNDEn~~aE---   91 (155)
                      ++.+.++.+.+.++...|.-+-.++|.+-+. ||          ...+|-+..+  .+.|+ .++|+--+..+++-+   
T Consensus        34 ~~~~~l~~~~~~l~~~~~~~l~~~~p~~~~~-l~----------~g~Rv~~~~~p~~~~~~~~i~IRk~~~~~~sl~~l~  102 (308)
T TIGR02788        34 LTFSHLMRLARAIASFSKQSISEENPILSAT-LP----------GGERVQIVIPPACENDTVSITIRKPSLVDFSLDDYE  102 (308)
T ss_pred             CCHHHHHHHHHHHHHHhCCcccCCCceEEEE-CC----------CCeEEEEECCCcccCCCceEEEECCCCCCCCHHHHH
Confidence            4667888888888888887777899988877 34          3446666543  45566 888888776665422   


Q ss_pred             ---------------------cch------hhhhhhcccccccceeeeeccCCCceeEEEEEEecCCc
Q psy13769         92 ---------------------LRN------CTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPH  132 (155)
Q Consensus        92 ---------------------LRN------~tavmknqvA~FNDLRFvGRSGRGKsftltItv~t~Pp  132 (155)
                                           |..      -...++..+..=.-+=++|.+|+||+=.+..-+.--|+
T Consensus       103 ~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~  170 (308)
T TIGR02788       103 EKGFFDTVRAQSGTLSDNDEQLLELLDAGDIKEFLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPK  170 (308)
T ss_pred             HcCCcccccccccccchhhHHHHHhhhhHHHHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCc
Confidence                                 110      11122233333345678999999998655433333343

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>cd01858 NGP_1 NGP-1

Probab=84.20  E-value=0.93  Score=33.27  Aligned_cols=42  Identities=19%  Similarity=0.196  Sum_probs=23.0

Q ss_pred             EEEeecCCCccchhcchhhhhhhccccccccee--eeeccCCCce
Q psy13769         78 VTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLR--FVGRSGRGKS  120 (155)
Q Consensus        78 Vtv~AGNDEn~~aELRN~tavmknqvA~FNDLR--FvGRSGRGKs  120 (155)
                      +.++|-+.++ ..+|.+...-..+....-...+  |+|+||.|||
T Consensus        73 ~~iSa~~~~~-~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKS  116 (157)
T cd01858          73 FHASINNPFG-KGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKS  116 (157)
T ss_pred             EEeecccccc-HHHHHHHHHHHHhhhccccceEEEEEeCCCCChH
Confidence            4456655554 3455554433222111123455  8999999998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=83.19  E-value=6.3  Score=33.93  Aligned_cols=96  Identities=19%  Similarity=0.263  Sum_probs=65.0

Q ss_pred             ccchhHHHHHHHHHhhhccceeecCCCcEEeecCCCccccCCCCCcceEEEE-eecCCCCeEEEEeecCCCccch-hcch
Q psy13769         17 AMTSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVV-LDDVMDGTIVTIRAGNDDNYCG-ELRN   94 (155)
Q Consensus        17 ~~~~~~~~~~~~~l~~~~gelv~T~sP~~lCs~LP~HWRsNKtLP~~FkVva-L~~VpDGT~Vtv~AGNDEn~~a-ELRN   94 (155)
                      .++.+.++.+.+.|+.+.|.-+-..+|.+-|. ||.         ...+|-+ +.++-+|..++|+--....+.- +|.+
T Consensus        60 ~~~~~~~~~~~~~lA~~~g~~~~~~~P~l~~~-lp~---------~G~Rv~~~~~p~~~g~~~~IRk~~~~~~tl~~l~~  129 (319)
T PRK13894         60 TLRVAQAQAIIETIAGYHGKEVTRSKPILEGE-LPL---------DGSRFAGQLPPVVPAPTFAIRKKAVAIFTLDQYVE  129 (319)
T ss_pred             CCCHHHHHHHHHHHHHHcCCcccCCCceEEEE-cCC---------CCEEEEEEcCCcCCCcEEEEECCCCCCCCHHHHHh
Confidence            35667888999999999999999999966554 341         2345544 3456688889999876554332 2321


Q ss_pred             -------hhhhhhcccccccceeeeeccCCCceeE
Q psy13769         95 -------CTAVVKNQVAKFNDLRFVGRSGRGKSFT  122 (155)
Q Consensus        95 -------~tavmknqvA~FNDLRFvGRSGRGKsft  122 (155)
                             ..+.++..+..-..+=++|..|.||+-.
T Consensus       130 ~g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl  164 (319)
T PRK13894        130 RGIMTAAQREAIIAAVRAHRNILVIGGTGSGKTTL  164 (319)
T ss_pred             cCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH
Confidence                   1244555555556678999999999833

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	155
1cmo_A	127	Immunoglobulin Motif Dna-Recognition And Heterodime		1e-51
1h9d_A	134	Aml1CBF-BetaDNA COMPLEX Length = 134		8e-51
1ljm_A	131	Dna Recognition Is Mediated By Conformational Trans		9e-51
1ean_A	140	The Runx1 Runt Domain At 1.25a Resolution: A Struct		1e-50
1eaq_A	140	The Runx1 Runt Domain At 1.25a Resolution: A Struct		2e-50
2j6w_A	140	R164n Mutant Of The Runx1 Runt Domain Length = 140		2e-50
1io4_C	123	Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN		2e-49
1co1_A	115	Fold Of The Cbfa Length = 115		2e-47

>pdb|1CMO|A Chain A, Immunoglobulin Motif Dna-Recognition And Heterodimerization For The Pebp2CBF RUNT-Domain Length = 127

Iteration: 1
 Score =  197 bits (502), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 91/125 (72%), Positives = 108/125 (86%)
Query: 28  EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
           E L ++ GELV+T SP  LCSVLPTHWRSNK+LPIAFKVV L DV DGT+VT+ AGND+N
Sbjct: 2   EVLADHPGELVRTDSPNFLCSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGNDEN 61
Query: 88  YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
           Y  ELRN TA +KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TVDG
Sbjct: 62  YSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDG 121
Query: 148 PREPR 152
           PREPR
Sbjct: 122 PREPR 126

>pdb|1H9D|A Chain A, Aml1CBF-BetaDNA COMPLEX Length = 134

Iteration: 1
 Score =  195 bits (496), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 90/125 (72%), Positives = 107/125 (85%)
Query: 28  EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
           E L ++ GELV+T SP  LCSVLPTHWR NK+LPIAFKVV L DV DGT+VT+ AGND+N
Sbjct: 4   EVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDEN 63
Query: 88  YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
           Y  ELRN TA +KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TVDG
Sbjct: 64  YSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDG 123
Query: 148 PREPR 152
           PREPR
Sbjct: 124 PREPR 128

>pdb|1LJM|A Chain A, Dna Recognition Is Mediated By Conformational Transition And By Dna Bending Length = 131

Iteration: 1
 Score =  195 bits (495), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 90/125 (72%), Positives = 107/125 (85%)
Query: 28  EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
           E L ++ GELV+T SP  LCSVLPTHWR NK+LPIAFKVV L DV DGT+VT+ AGND+N
Sbjct: 3   EVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDEN 62
Query: 88  YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
           Y  ELRN TA +KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TVDG
Sbjct: 63  YSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDG 122
Query: 148 PREPR 152
           PREPR
Sbjct: 123 PREPR 127

>pdb|1EAN|A Chain A, The Runx1 Runt Domain At 1.25a Resolution: A Structural Switch And Specifically Bound Chloride Ions Modulate Dna Binding Length = 140

Iteration: 1
 Score =  195 bits (495), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 90/125 (72%), Positives = 107/125 (85%)
Query: 28  EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
           E L ++ GELV+T SP  L SVLPTHWRSNK+LPIAFKVV L DV DGT+VT+ AGND+N
Sbjct: 8   EVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGNDEN 67
Query: 88  YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
           Y  ELRN TA +KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TVDG
Sbjct: 68  YSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDG 127
Query: 148 PREPR 152
           PREPR
Sbjct: 128 PREPR 132

>pdb|1EAQ|A Chain A, The Runx1 Runt Domain At 1.25a Resolution: A Structural Switch And Specifically Bound Chloride Ions Modulate Dna Binding Length = 140

Iteration: 1
 Score =  194 bits (493), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 90/125 (72%), Positives = 106/125 (84%)
Query: 28  EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
           E L ++ GELV+T SP  L SVLPTHWRSNK+LPIAFKVV L DV DGT+VT+ AGND+N
Sbjct: 8   EVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVXAGNDEN 67
Query: 88  YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
           Y  ELRN TA  KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TVDG
Sbjct: 68  YSAELRNATAAXKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDG 127
Query: 148 PREPR 152
           PREPR
Sbjct: 128 PREPR 132

>pdb|2J6W|A Chain A, R164n Mutant Of The Runx1 Runt Domain Length = 140

Iteration: 1
 Score =  194 bits (492), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 90/125 (72%), Positives = 106/125 (84%)
Query: 28  EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
           E L ++ GELV+T SP  L SVLPTHWRSNK+LPIAFKVV L DV DGT+VT+ AGND+N
Sbjct: 8   EVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGNDEN 67
Query: 88  YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
           Y  ELRN TA +KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y+ AIK+TVDG
Sbjct: 68  YSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHNAIKITVDG 127
Query: 148 PREPR 152
           PREPR
Sbjct: 128 PREPR 132

>pdb|1IO4|C Chain C, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN- Cbfbeta Core Domain Heterodimer And CEBPBETA BZIP Homodimer Bound To A Dna Fragment From The Csf-1r Promoter Length = 123

Iteration: 1
 Score =  191 bits (484), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 88/118 (74%), Positives = 103/118 (87%)
Query: 35  GELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDNYCGELRN 94
           GELV+T SP  LCSVLPTHWR NK+LPIAFKVV L DV DGT+VT+ AGND+NY  ELRN
Sbjct: 1   GELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRN 60
Query: 95  CTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDGPREPR 152
            TA +KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TVDGPREPR
Sbjct: 61  ATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPR 118

>pdb|1CO1|A Chain A, Fold Of The Cbfa Length = 115

Iteration: 1
 Score =  184 bits (466), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 85/115 (73%), Positives = 100/115 (86%)
Query: 36  ELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDNYCGELRNC 95
           ELV+T SP  LCSVLPTHWR NK+LPIAFKVV L DV DGT+VT+ AGND+NY  ELRN 
Sbjct: 1   ELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNA 60
Query: 96  TAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDGPRE 150
           TA +KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TVDGPRE
Sbjct: 61  TAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPRE 115

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	155
1eaq_A	140	RUNT-related transcription factor 1; transcription	8e-69

>1eaq_A RUNT-related transcription factor 1; transcription/DNA, acute myeloid leukemia, AML, RUNX1, RUNT domain, chloride binding, IG fold; HET: MSE; 1.25A {Mus musculus} SCOP: b.2.5.6 PDB: 1ean_A 1eao_A* 2j6w_A 1e50_A 1h9d_A* 1ljm_A 1cmo_A 1hjc_A* 1hjb_C* 1io4_C 1co1_A Length = 140

 Score =  203 bits (518), Expect = 8e-69
 Identities = 90/130 (69%), Positives = 108/130 (83%)

Query: 26  IHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGND 85
           + E L ++ GELV+T SP  L SVLPTHWRSNK+LPIAFKVV L DV DGT+VT+ AGND
Sbjct: 6   MVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGND 65

Query: 86  DNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTV 145
           +NY  ELRN TA +KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TV
Sbjct: 66  ENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITV 125

Query: 146 DGPREPRSKS 155
           DGPREPR   
Sbjct: 126 DGPREPRRHR 135

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	155
1eaq_A	140	RUNT-related transcription factor 1; transcription	100.0
2zhn_A	148	Galectin-9; beta sandwich, carbohydrate binding pr	86.75
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	85.65
3nv1_A	138	Galectin-9, galectin 9 short isoform variant; suga	80.37

>1eaq_A RUNT-related transcription factor 1; transcription/DNA, acute myeloid leukemia, AML, RUNX1, RUNT domain, chloride binding, IG fold; HET: MSE; 1.25A {Mus musculus} SCOP: b.2.5.6 PDB: 1ean_A 1eao_A* 2j6w_A 1e50_A 1h9d_A* 1ljm_A 1cmo_A 1hjc_A* 1hjb_C* 1io4_C 1co1_A

Probab=100.00  E-value=1.9e-91  Score=545.62  Aligned_cols=133  Identities=68%  Similarity=1.037  Sum_probs=123.7

Q ss_pred             HHHHHHHHhhhccceeecCCCcEEeecCCCccccCCCCCcceEEEEeecCCCCeEEEEeecCCCccchhcchhhhhhhcc
Q psy13769         23 FAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDNYCGELRNCTAVVKNQ  102 (155)
Q Consensus        23 ~~~~~~~l~~~~gelv~T~sP~~lCs~LP~HWRsNKtLP~~FkVvaL~~VpDGT~Vtv~AGNDEn~~aELRN~tavmknq  102 (155)
                      .|++.|+|+||+||||+||||||+||+||+|||||||||.+|||||||+|||||+|||+|||||||||||||++|+||||
T Consensus         3 er~~~e~l~~~~gelv~T~sP~~~cs~LP~HWRsNKtLP~~FkVvalg~V~DGT~Vtv~AGNDEn~~aelrN~~a~mknq   82 (140)
T 1eaq_A            3 DRSMVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQ   82 (140)
T ss_dssp             --CHHHHHHHSTTTCEECSSTTEEECCCCSEEETTCCCSSCCEEEESSCCCTTCEEEEEEEETTEEEECEESCEEEEETT
T ss_pred             chhHHHHHhhCCCceEecCCCCEEEccCcchhccCCCCCCceEEEEecccCCCCEEEEEecCCcchhHHHHhHHHHHhhc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccceeeeeccCCCceeEEEEEEecCCceeeeeeeeeEEeeeCCCCCCCCC
Q psy13769        103 VAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDGPREPRSKS  155 (155)
Q Consensus       103 vA~FNDLRFvGRSGRGKsftltItv~t~Ppqvaty~~AIKVTVDGPRePR~k~  155 (155)
                      |||||||||||||||||||+|||+|+|+|||||||+||||||||||||||+++
T Consensus        83 vA~FnDLRFvgRSGRGKsFtlTItv~t~PpqvAty~~AIKVTVDGPRePR~~r  135 (140)
T 1eaq_A           83 VARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHR  135 (140)
T ss_dssp             EEECSSCEECSCCCTTCCBEEEEEECSSSCEEEECSSCBEEESSCC-------
T ss_pred             cceeecccccccCCCCccEEEEEEEecCCcchhhheeeEEEEecCCCCCcccc
Confidence            99999999999999999999999999999999999999999999999999974

>2zhn_A Galectin-9; beta sandwich, carbohydrate binding protein, sugar protein; HET: NAG GAL; 1.30A {Homo sapiens} PDB: 2eak_A* 2eal_A* 2zhk_A* 2zhm_A* 2zhl_A* 2yy1_A* 3lsd_A 3lse_A*

Probab=86.75  E-value=1.8  Score=31.84  Aligned_cols=22  Identities=41%  Similarity=0.709  Sum_probs=16.4

Q ss_pred             CCceeEEEEEEecCCceeeeeeeeeEEeeeC
Q psy13769        117 RGKSFTLSIMVGSSPHQIASYNKAIKVTVDG  147 (155)
Q Consensus       117 RGKsftltItv~t~Ppqvaty~~AIKVTVDG  147 (155)
                      +|+.|.|+|.+.-         ..+||.|+|
T Consensus        95 ~G~~F~l~i~~~~---------~~f~V~vng  116 (148)
T 2zhn_A           95 KGMPFDLCFLVQS---------SDFKVMVNG  116 (148)
T ss_dssp             TTCEEEEEEEECS---------SEEEEEETT
T ss_pred             CCCeEEEEEEEcC---------CEEEEEECC
Confidence            6999999998764         355666666

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=85.65  E-value=0.52  Score=41.08  Aligned_cols=119  Identities=18%  Similarity=0.212  Sum_probs=69.7

Q ss_pred             cchhHHHHHHHHHhhhccceeecCCCcEEeecCCCccccCCCCCcceEEEEeec-CCCCeEEEEeecCCCcc-chhcch-
Q psy13769         18 MTSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDD-VMDGTIVTIRAGNDDNY-CGELRN-   94 (155)
Q Consensus        18 ~~~~~~~~~~~~l~~~~gelv~T~sP~~lCs~LP~HWRsNKtLP~~FkVvaL~~-VpDGT~Vtv~AGNDEn~-~aELRN-   94 (155)
                      ++.+.+..+...++...|.-+-..+|.+-+. ||..-|.+-.+        -.+ ..+|+.++|+-=..... ..+|-+ 
T Consensus       172 ~~~~~l~~li~~i~~~~g~~i~~~~P~~~~~-lp~g~Rv~~~~--------~~~~~~~G~~i~IR~~~~~~~~~~~l~~~  242 (511)
T 2oap_1          172 LDQEKLDRMVLRLTQRSGKHISIANPIVDAT-LPDGSRLQATF--------GTEVTPRGSSFTIRKFTIEPLTPIDLIEK  242 (511)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCCBTTBCEEEEE-ETTTEEEEEEC--------SSSSCTTCSEEEEEECCCCCCCHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHcCCCccccCcceeee-cCCCeEEEEEE--------CCCccCCCCEEEEEecCCCCCChhhHHhc
Confidence            3557778888888888887666677865433 45544433222        012 36899999997665543 222221 


Q ss_pred             --hh----hhhhcccccccceeeeeccCCCceeEEEEEEecCCceeeeeeeeeEEeeeCCCCC
Q psy13769         95 --CT----AVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDGPREP  151 (155)
Q Consensus        95 --~t----avmknqvA~FNDLRFvGRSGRGKsftltItv~t~Ppqvaty~~AIKVTVDGPReP  151 (155)
                        .+    ..+.-.+..-.-+=++|.+|+|||=+|..-..--||.-      =.||++||.|-
T Consensus       243 G~~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~------giitied~~E~  299 (511)
T 2oap_1          243 GTVPSGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDA------KVVSIEDTREI  299 (511)
T ss_dssp             TSSCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTC------CEEEEESSCCC
T ss_pred             CCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCC------CEEEEcCcccc
Confidence              11    11222223333477999999999977765555555531      13677887763

>3nv1_A Galectin-9, galectin 9 short isoform variant; sugar binding, sugar binding protein; 1.50A {Homo sapiens} SCOP: b.29.1.0 PDB: 3nv2_A* 3nv3_A* 3nv4_A*

Probab=80.37  E-value=6.2  Score=28.66  Aligned_cols=22  Identities=45%  Similarity=0.831  Sum_probs=16.9

Q ss_pred             CCceeEEEEEEecCCceeeeeeeeeEEeeeC
Q psy13769        117 RGKSFTLSIMVGSSPHQIASYNKAIKVTVDG  147 (155)
Q Consensus       117 RGKsftltItv~t~Ppqvaty~~AIKVTVDG  147 (155)
                      +|+.|.|+|.+..         ..+||.|+|
T Consensus        85 ~G~~F~l~I~~~~---------~~f~V~vng  106 (138)
T 3nv1_A           85 RGQSFSVWILCEA---------HCLKVAVDG  106 (138)
T ss_dssp             TTCEEEEEEEECS---------SEEEEEETT
T ss_pred             CCCeEEEEEEEcc---------ceEEEEECC
Confidence            7999999998764         456677766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	155
d1eaqa_	124	b.2.5.6 (A:) Acute myeloid leukemia 1 protein (AML	3e-81

>d1eaqa_ b.2.5.6 (A:) Acute myeloid leukemia 1 protein (AML1), RUNT domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 124

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: RUNT domain
domain: Acute myeloid leukemia 1 protein (AML1), RUNT domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  233 bits (596), Expect = 3e-81
 Identities = 86/123 (69%), Positives = 104/123 (84%)

Query: 26  IHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGND 85
           + E L ++ GELV+T SP  L SVLPTHWRSNK+LPIAFKVV L DV DGT+VT+ AGND
Sbjct: 2   MVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGND 61

Query: 86  DNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTV 145
           +NY  ELRN TA +KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TV
Sbjct: 62  ENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITV 121

Query: 146 DGP 148
           DGP
Sbjct: 122 DGP 124

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	155
d1eaqa_	124	Acute myeloid leukemia 1 protein (AML1), RUNT doma	100.0

>d1eaqa_ b.2.5.6 (A:) Acute myeloid leukemia 1 protein (AML1), RUNT domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: RUNT domain
domain: Acute myeloid leukemia 1 protein (AML1), RUNT domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-87  Score=513.49  Aligned_cols=124  Identities=69%  Similarity=1.070  Sum_probs=122.8

Q ss_pred             HHHHHHhhhccceeecCCCcEEeecCCCccccCCCCCcceEEEEeecCCCCeEEEEeecCCCccchhcchhhhhhhcccc
Q psy13769         25 GIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDNYCGELRNCTAVVKNQVA  104 (155)
Q Consensus        25 ~~~~~l~~~~gelv~T~sP~~lCs~LP~HWRsNKtLP~~FkVvaL~~VpDGT~Vtv~AGNDEn~~aELRN~tavmknqvA  104 (155)
                      +|.|+|+|||||||+|+||+|+||+||+|||||||||.+||||+|+||||||+|||+|||||||||||||++|+||||||
T Consensus         1 ~l~~~l~e~pgelv~t~sP~~lCs~LP~HWRsNKtLp~~Fkvv~L~~v~dGt~vti~agNden~~aelrn~ta~mknqva   80 (124)
T d1eaqa_           1 SMVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVA   80 (124)
T ss_dssp             CHHHHHHHSTTTCEECSSTTEEECCCCSEEETTCCCSSCCEEEESSCCCTTCEEEEEEEETTEEEECEESCEEEEETTEE
T ss_pred             CHhHHHHhCCCccccCCCCCEEeecCcchhccCCccCcceEEEEeeecCCCcEEEEEecCCcccchhhhhhHHHHhhccc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceeeeeccCCCceeEEEEEEecCCceeeeeeeeeEEeeeCC
Q psy13769        105 KFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDGP  148 (155)
Q Consensus       105 ~FNDLRFvGRSGRGKsftltItv~t~Ppqvaty~~AIKVTVDGP  148 (155)
                      |||||||||||||||||||||+|+|+|||||||+||||||||||
T Consensus        81 ~fndLrFvgRSgrgKsFtLTItv~t~PpqVAty~rAIKVTVDGP  124 (124)
T d1eaqa_          81 RFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGP  124 (124)
T ss_dssp             ECSSCEECSCCCTTCCBEEEEEECSSSCEEEECSSCBEEESSCC
T ss_pred             cccceEEeccCCCCceEEEEEEEecCCchheeheeeEEEeccCC
Confidence            99999999999999999999999999999999999999999998