Psyllid ID: psy13773

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
MISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLMFPSNPNQSQSGGPNSAPANESGTGGILQDEAEDDLYN
Secondary Structure (PSIPRED)
cEEEcccccHHHHHHcccccccccEEEccccccHHHHHHHHHHHcccEEEEEEcccHHHHHHcHHHHHHHHHHHHcccccccEEccccccccccccEEEcccccHHHHHcHHHHHHHcccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEcccccHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHcccEEEEEccHHHHHHHHcHcHHHHHHHHHHHHHccEEEEEEccccccccHHHHccccccHHHHHHHHHHHHccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHcccHHHcccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHcccccccccccccccccEEEEEcccccccEEEcccccEEEcccccEEEEEccccccccc
Coil and Loop (DISEMBL)
mistypvehpekflkfgmqpsrgvlfygppgcgkTLLAKAIANECQanfisvkgpelltmwfgeseanVRDIFDKVTMENFRyamgksspsalRETIvevpnitwediggleGVKRELQELVQDVDLNYIAKvtngfsgaDLTEICQRACKLAIRQSIETEIRREREklagnpaasaametededdpvpeiTRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQsrgfgtnfrfpsnpnqsqsggpnsapanesgtggillmfpsnpnqsqsggpnsapanesgtggilqdeaeddlyn
Flexible Loop (DISEMBL)
mistypvehpekFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYamgksspsalrETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRrereklagnpaasaametededdpvPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLMFPSNPNQSQSGGPNSAPANESgtggilqdeaeddlyn
Low Complexity Region (SEG)
MISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLMFPSNPNQSQSGGPNSAPANESGTGGILQDEAEDDLYN
Disordered region (IsUnstruct)
************FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS**SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSI****************************************************DIRKYEMFAQ*******************************************************************************
Disordered Region (DISOPRED)
MISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG***********VEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRE*************METEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYE****************************************GGILLMF****************************E****LY*
Disordered Region (DISEMBL)
MISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK******************PVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSN****************SGTGGILLMFPSNP******************GGILQDEAEDDLYN
Disordered Region (DISPRO)
*ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAG********ETEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNS****ESGTGGILLMFPSNPNQSQSGGPNSAPANESGTGGILQDEAE****N
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLMFPSNPNQSQSGGPNSAPANESGTGGILQDEAEDDLYN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	299	2.2.26 [Sep-21-2011]
P54812	810	Transitional endoplasmic	yes	N/A	0.772	0.285	0.474	1e-59
Q7KN62	801	Transitional endoplasmic	yes	N/A	0.444	0.166	0.702	4e-47
P23787	805	Transitional endoplasmic	N/A	N/A	0.367	0.136	0.758	8e-43
P54811	809	Transitional endoplasmic	no	N/A	0.424	0.156	0.679	4e-41
Q6GL04	805	Transitional endoplasmic	yes	N/A	0.217	0.080	0.929	3e-36
Q7ZU99	806	Transitional endoplasmic	no	N/A	0.110	0.040	0.929	3e-36
P03974	806	Transitional endoplasmic	yes	N/A	0.227	0.084	0.891	3e-36
Q3ZBT1	806	Transitional endoplasmic	yes	N/A	0.227	0.084	0.891	3e-36
Q01853	806	Transitional endoplasmic	yes	N/A	0.227	0.084	0.891	3e-36
P55072	806	Transitional endoplasmic	yes	N/A	0.227	0.084	0.891	3e-36

>sp|P54812|TERA2_CAEEL Transitional endoplasmic reticulum ATPase homolog 2 OS=Caenorhabditis elegans GN=cdc-48.2 PE=1 SV=2

 Score =  229 bits (585), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 138/291 (47%), Positives = 172/291 (59%), Gaps = 60/291 (20%)

Query: 2   ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN------------------ 43
           +  YPVEHPEK+LKFGMQPSRGVLFYGPPGCGKTLLAKAIAN                  
Sbjct: 497 LVQYPVEHPEKYLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 556

Query: 44  --ECQAN----FISVKGPELLTMWFGESEA---------------------NVRDIFDKV 76
             E +AN    F   +      ++F E ++                      V    D +
Sbjct: 557 FGESEANVRDVFDKARAAAPCVLFFDELDSIAKARGGSVGDAGGAADRVINQVLTEMDGM 616

Query: 77  TMENFRYAMGKSS------PSALR----ETIVEVPNITWEDIGGLEGVKRELQE--LVQD 124
             +   + +G ++      P+ LR    + ++ +P    ++   L+  K  L++  L  D
Sbjct: 617 NAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIP--LPDEASRLQIFKASLRKTPLSAD 674

Query: 125 VDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDE 184
           +DLN++AK T GFSGADLTEICQRACKLAIR+SIE EIR+E+E+   +      ME E  
Sbjct: 675 LDLNFLAKNTVGFSGADLTEICQRACKLAIRESIEREIRQEKERQDRSARGEELMEDELA 734

Query: 185 DDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFP 235
           D PVPEITRAHFEEAM+FARRSV D DIRKYEMFAQTLQQSRGFG NF+FP
Sbjct: 735 D-PVPEITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKFP 784

Caenorhabditis elegans (taxid: 6239)

>sp|Q7KN62|TERA_DROME Transitional endoplasmic reticulum ATPase TER94 OS=Drosophila melanogaster GN=TER94 PE=1 SV=1

 Score =  188 bits (477), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 97/138 (70%), Positives = 108/138 (78%), Gaps = 5/138 (3%)

Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAME 180
           L ++VDL YIAKVT GFSGADLTEICQRACKLAIRQ+IE EIRRE+E+ A N  ++  M 
Sbjct: 663 LAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIRREKER-AENQNSAMDM- 720

Query: 181 TEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ 240
             DEDDPVPEIT AHFEEAM+FARRSV+D DIRKYEMFAQTLQQSRGFG NFRFP     
Sbjct: 721 --DEDDPVPEITSAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGQNFRFPGQTGN 778

Query: 241 SQSGGPNSAPANESGTGG 258
           + SG  N+ P N  G  G
Sbjct: 779 T-SGSGNNLPVNSPGDNG 795

Necessary for the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis. Involved in the formation of the transitional endoplasmic reticulum (tER). The transfer of membranes from the endoplasmic reticulum to the Golgi apparatus occurs via 50-70 nm transition vesicles which derive from part-rough, part-smooth transitional elements of the endoplasmic reticulum (tER). Vesicle budding from the tER is an ATP-dependent process (By similarity). Involved in the ubiquitin-proteasome system. Important for oskar mRNA localization and/or anchoring during oogenesis.

Drosophila melanogaster (taxid: 7227)

>sp|P23787|TERA_XENLA Transitional endoplasmic reticulum ATPase OS=Xenopus laevis GN=vcp PE=1 SV=3

 Score =  174 bits (441), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 88/116 (75%), Positives = 102/116 (87%), Gaps = 6/116 (5%)

Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAME 180
           + +DVD++++AK+TNGFSGADLTEICQRACKLAIR+SIE EIRRER++   NP+A   ME
Sbjct: 666 VAKDVDVDFLAKMTNGFSGADLTEICQRACKLAIRESIENEIRRERDR-QTNPSA---ME 721

Query: 181 TEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPS 236
            E EDDPVPEI R HFEEAMRFARRSV+D DIRKYEMFAQTLQQSRGFG+ FRFP+
Sbjct: 722 VE-EDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPA 775

Necessary for the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis. Involved in the formation of the nuclear envelope, and of the transitional endoplasmic reticulum (tER). The transfer of membranes from the endoplasmic reticulum to the Golgi apparatus occurs via 50-70 nm transition vesicles which derive from part-rough, part-smooth transitional elements of the endoplasmic reticulum (tER). Vesicle budding from the tER is an ATP-dependent process.

Xenopus laevis (taxid: 8355)

>sp|P54811|TERA1_CAEEL Transitional endoplasmic reticulum ATPase homolog 1 OS=Caenorhabditis elegans GN=cdc-48.1 PE=1 SV=1

 Score =  168 bits (426), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 89/131 (67%), Positives = 99/131 (75%), Gaps = 4/131 (3%)

Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAME 180
           L +D+DL ++AK T GFSGADLTEICQRACKLAIR+SIE EIR E+E+          ME
Sbjct: 673 LSKDLDLTFLAKNTVGFSGADLTEICQRACKLAIRESIEKEIRIEKERQDRQARGEELME 732

Query: 181 TEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ 240
            +D  DPVPEITRAHFEEAM+FARRSV D DIRKYEMFAQTLQQSRGFG NF+FP    Q
Sbjct: 733 -DDAVDPVPEITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKFPG--EQ 789

Query: 241 SQSGGPNSAPA 251
             S  P SAP 
Sbjct: 790 RGSDAP-SAPV 799

Caenorhabditis elegans (taxid: 6239)

>sp|Q6GL04|TERA_XENTR Transitional endoplasmic reticulum ATPase OS=Xenopus tropicalis GN=vcp PE=2 SV=1

 Score =  152 bits (384), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 66/71 (92%), Positives = 70/71 (98%)

Query: 5   YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
           YPVEHP+KFLKFGM PS+GVLFYGPPGCGKTLLAKAIANECQANFIS+KGPELLTMWFGE
Sbjct: 495 YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 554

Query: 65  SEANVRDIFDK 75
           SEANVR+IFDK
Sbjct: 555 SEANVREIFDK 565

Necessary for the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis. Involved in the formation of the nuclear envelope and of the transitional endoplasmic reticulum (tER). The transfer of membranes from the endoplasmic reticulum to the Golgi apparatus occurs via 50-70 nm transition vesicles which derive from part-rough, part-smooth transitional elements of the endoplasmic reticulum (tER). Vesicle budding from the tER is an ATP-dependent process.

Xenopus tropicalis (taxid: 8364)

>sp|Q7ZU99|TERA_DANRE Transitional endoplasmic reticulum ATPase OS=Danio rerio GN=vcp PE=1 SV=1

 Score =  152 bits (384), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 66/71 (92%), Positives = 70/71 (98%)

Query: 5   YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
           YPVEHP+KFLKFGM PS+GVLFYGPPGCGKTLLAKAIANECQANFIS+KGPELLTMWFGE
Sbjct: 495 YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 554

Query: 65  SEANVRDIFDK 75
           SEANVR+IFDK
Sbjct: 555 SEANVREIFDK 565

Necessary for the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis. Involved in the formation of the nuclear envelope, and of the transitional endoplasmic reticulum (tER). The transfer of membranes from the endoplasmic reticulum to the Golgi apparatus occurs via 50-70 nm transition vesicles which derive from part-rough, part-smooth transitional elements of the endoplasmic reticulum (tER). Vesicle budding from the tER is an ATP-dependent process (By similarity). Enhances cell cycle progression and inhibits apoptosis at low temperatures.

Danio rerio (taxid: 7955)

>sp|P03974|TERA_PIG Transitional endoplasmic reticulum ATPase OS=Sus scrofa GN=VCP PE=1 SV=5

 Score =  152 bits (384), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 66/74 (89%), Positives = 71/74 (95%)

Query: 2   ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 61
           +  YPVEHP+KFLKFGM PS+GVLFYGPPGCGKTLLAKAIANECQANFIS+KGPELLTMW
Sbjct: 492 LVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 551

Query: 62  FGESEANVRDIFDK 75
           FGESEANVR+IFDK
Sbjct: 552 FGESEANVREIFDK 565

Necessary for the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis. Involved in the formation of the transitional endoplasmic reticulum (tER). The transfer of membranes from the endoplasmic reticulum to the Golgi apparatus occurs via 50-70 nm transition vesicles which derive from part-rough, part-smooth transitional elements of the endoplasmic reticulum (tER). Vesicle budding from the tER is an ATP-dependent process. The ternary complex containing UFD1L, VCP and NPLOC4 binds ubiquitinated proteins and is necessary for the export of misfolded proteins from the ER to the cytoplasm, where they are degraded by the proteasome. The NPLOC4-UFD1L-VCP complex regulates spindle disassembly at the end of mitosis and is necessary for the formation of a closed nuclear envelope. Regulates E3 ubiquitin-protein ligase activity of RNF19A (By similarity). Component of the VCP/p97-AMFR/gp78 complex that participates in the final step of the sterol-mediated ubiquitination and endoplasmic reticulum-associated degradation (ERAD) of HMGCR.

Sus scrofa (taxid: 9823)

>sp|Q3ZBT1|TERA_BOVIN Transitional endoplasmic reticulum ATPase OS=Bos taurus GN=VCP PE=2 SV=1

 Score =  152 bits (384), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 66/74 (89%), Positives = 71/74 (95%)

Query: 2   ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 61
           +  YPVEHP+KFLKFGM PS+GVLFYGPPGCGKTLLAKAIANECQANFIS+KGPELLTMW
Sbjct: 492 LVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 551

Query: 62  FGESEANVRDIFDK 75
           FGESEANVR+IFDK
Sbjct: 552 FGESEANVREIFDK 565

Necessary for the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis. Involved in the formation of the transitional endoplasmic reticulum (tER). The transfer of membranes from the endoplasmic reticulum to the Golgi apparatus occurs via 50-70 nm transition vesicles which derive from part-rough, part-smooth transitional elements of the endoplasmic reticulum (tER). Vesicle budding from the tER is an ATP-dependent process. The ternary complex containing UFD1L, VCP and NPLOC4 binds ubiquitinated proteins and is necessary for the export of misfolded proteins from the ER to the cytoplasm, where they are degraded by the proteasome. The NPLOC4-UFD1L-VCP complex regulates spindle disassembly at the end of mitosis and is necessary for the formation of a closed nuclear envelope. Regulates E3 ubiquitin-protein ligase activity of RNF19A (By similarity). Component of the VCP/p97-AMFR/gp78 complex that participates in the final step of the sterol-mediated ubiquitination and endoplasmic reticulum-associated degradation (ERAD) of HMGCR.

Bos taurus (taxid: 9913)

>sp|Q01853|TERA_MOUSE Transitional endoplasmic reticulum ATPase OS=Mus musculus GN=Vcp PE=1 SV=4

 Score =  152 bits (383), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 66/74 (89%), Positives = 71/74 (95%)

Query: 2   ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 61
           +  YPVEHP+KFLKFGM PS+GVLFYGPPGCGKTLLAKAIANECQANFIS+KGPELLTMW
Sbjct: 492 LVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 551

Query: 62  FGESEANVRDIFDK 75
           FGESEANVR+IFDK
Sbjct: 552 FGESEANVREIFDK 565

Necessary for the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis. Involved in the formation of the transitional endoplasmic reticulum (tER). The transfer of membranes from the endoplasmic reticulum to the Golgi apparatus occurs via 50-70 nm transition vesicles which derive from part-rough, part-smooth transitional elements of the endoplasmic reticulum (tER). Vesicle budding from the tER is an ATP-dependent process. The ternary complex containing UFD1L, VCP and NPLOC4 binds ubiquitinated proteins and is necessary for the export of misfolded proteins from the ER to the cytoplasm, where they are degraded by the proteasome. The NPLOC4-UFD1L-VCP complex regulates spindle disassembly at the end of mitosis and is necessary for the formation of a closed nuclear envelope. Regulates E3 ubiquitin-protein ligase activity of RNF19A (By similarity). Component of the VCP/p97-AMFR/gp78 complex that participates in the final step of the sterol-mediated ubiquitination and endoplasmic reticulum-associated degradation (ERAD) of HMGCR.

Mus musculus (taxid: 10090)

>sp|P55072|TERA_HUMAN Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4

 Score =  152 bits (383), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 66/74 (89%), Positives = 71/74 (95%)

Query: 2   ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 61
           +  YPVEHP+KFLKFGM PS+GVLFYGPPGCGKTLLAKAIANECQANFIS+KGPELLTMW
Sbjct: 492 LVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 551

Query: 62  FGESEANVRDIFDK 75
           FGESEANVR+IFDK
Sbjct: 552 FGESEANVREIFDK 565

Necessary for the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis. Involved in the formation of the transitional endoplasmic reticulum (tER). The transfer of membranes from the endoplasmic reticulum to the Golgi apparatus occurs via 50-70 nm transition vesicles which derive from part-rough, part-smooth transitional elements of the endoplasmic reticulum (tER). Vesicle budding from the tER is an ATP-dependent process. The ternary complex containing UFD1L, VCP and NPLOC4 binds ubiquitinated proteins and is necessary for the export of misfolded proteins from the ER to the cytoplasm, where they are degraded by the proteasome. The NPLOC4-UFD1L-VCP complex regulates spindle disassembly at the end of mitosis and is necessary for the formation of a closed nuclear envelope. Regulates E3 ubiquitin-protein ligase activity of RNF19A (By similarity). Component of the VCP/p97-AMFR/gp78 complex that participates in the final step of the sterol-mediated ubiquitination and endoplasmic reticulum-associated degradation (ERAD) of HMGCR.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
47226685	797	unnamed protein product [Tetraodon nigro	0.769	0.288	0.567	3e-76
302686514	814	hypothetical protein SCHCODRAFT_85085 [S	0.769	0.282	0.547	3e-74
384250485	818	AAA ATPase [Coccomyxa subellipsoidea C-1	0.775	0.283	0.554	4e-74
443694341	812	hypothetical protein CAPTEDRAFT_161400,	0.869	0.320	0.484	2e-72
218184617	755	hypothetical protein OsI_33786 [Oryza sa	0.725	0.287	0.620	6e-71
159476808	817	flagellar associated protein [Chlamydomo	0.752	0.275	0.529	2e-69
242036965	712	hypothetical protein SORBIDRAFT_01g04744	0.775	0.325	0.505	2e-68
242042265	780	hypothetical protein SORBIDRAFT_01g04741	0.775	0.297	0.501	3e-67
268532274	807	Hypothetical protein CBG03070 [Caenorhab	0.762	0.282	0.508	2e-66
308509910	809	CRE-CDC-48.1 protein [Caenorhabditis rem	0.762	0.281	0.505	2e-66

>gi|47226685|emb|CAG07844.1| unnamed protein product [Tetraodon nigroviridis]

 Score =  291 bits (744), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 160/282 (56%), Positives = 197/282 (69%), Gaps = 52/282 (18%)

Query: 5   YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
           YPVEHP+KFLKFGM PS+GVLFYGPPGCGKTLLAKAIANECQANFIS+KGPELLTMWFGE
Sbjct: 489 YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 548

Query: 65  SEANVRDIFDKVTM--------------------------ENFRYAMGKSS------PSA 92
           SEANVR+IFDK  M                          +   + +G ++      P+ 
Sbjct: 549 SEANVREIFDKARMLESEELAQWWQVFAQQILTEMDGMSSKKNVFIIGATNRPDIIDPAI 608

Query: 93  LR----ETIVEVPNITWEDIGGLEGVKRELQE--LVQDVDLNYIAKVTNGFSGADLTEIC 146
           LR    + ++ +P    ++   +  +K  L++  + QDVDL+++AK+TNGFSGADLTEIC
Sbjct: 609 LRPGRLDQLIYIP--LPDEKSRISILKANLRKSPISQDVDLDFLAKMTNGFSGADLTEIC 666

Query: 147 QRACKLAIRQSIETEIRRE-REKLAGNPAASAAM-------ETE---DEDDPVPEITRAH 195
           QRACKLAIR+SIE+EIRR  R +    P + A +       +T+   +EDDPVPEI + H
Sbjct: 667 QRACKLAIRESIESEIRRRGRGRPTLRPWSVALLSLLPLPEQTDREVEEDDPVPEIRKDH 726

Query: 196 FEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSN 237
           FEEAMRFARRSV+D DIRKYEMFAQTLQQSRGFG+ FRFPS+
Sbjct: 727 FEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPSS 767

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|302686514|ref|XP_003032937.1| hypothetical protein SCHCODRAFT_85085 [Schizophyllum commune H4-8] gi|300106631|gb|EFI98034.1| hypothetical protein SCHCODRAFT_85085 [Schizophyllum commune H4-8]

 Score =  284 bits (727), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 157/287 (54%), Positives = 187/287 (65%), Gaps = 57/287 (19%)

Query: 5   YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
           YPVEHP+KFLK+GM PS+GVLFYGPPG GKT+LAKAIANEC ANFIS+KGPELLTMWFGE
Sbjct: 499 YPVEHPDKFLKYGMSPSKGVLFYGPPGTGKTMLAKAIANECNANFISIKGPELLTMWFGE 558

Query: 65  SEANVRDIFDKVT-----------MENFRYAMGKSSPSA-------LRETIVEVPNITWE 106
           SEANVRD+FDK             +++   A G SS  A       L + + E+  +  +
Sbjct: 559 SEANVRDVFDKARAAAPCVMFFDELDSIAKARGSSSGDAGGAGDRVLNQILTEMDGMNSK 618

Query: 107 D----IGG-------------------------------LEGVKRELQE--LVQDVDLNY 129
                IG                                L  +K  L++  L  DVDLN+
Sbjct: 619 KNVFIIGATNRPDQIDSALLRPGRLDQLIYIPLPGEAERLSILKATLKKSPLAPDVDLNF 678

Query: 130 IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETE-DEDDPV 188
           +A+ T+GFSGADLTEICQRA KLAIR SIE +IRR REK A N    A ME + +E+DPV
Sbjct: 679 LAQKTHGFSGADLTEICQRAAKLAIRASIEADIRRAREK-AKNEDGDAKMEEDAEEEDPV 737

Query: 189 PEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFP 235
           PEITR HFEEAM+FARRSV+D DIR+YEMFAQ LQQ+RGFG NF+FP
Sbjct: 738 PEITREHFEEAMKFARRSVSDQDIRRYEMFAQNLQQARGFGNNFKFP 784

Source: Schizophyllum commune H4-8

Species: Schizophyllum commune

Genus: Schizophyllum

Family: Schizophyllaceae

Order: Agaricales

Class: Agaricomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|384250485|gb|EIE23964.1| AAA ATPase [Coccomyxa subellipsoidea C-169]

 Score =  284 bits (726), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 162/292 (55%), Positives = 190/292 (65%), Gaps = 60/292 (20%)

Query: 2   ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 61
           +  YPVEHPEKF KFGM PS+GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW
Sbjct: 500 VVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 559

Query: 62  FGESEANVRDIFDKVT-----------MENFRYAMGKSSPSA-------LRETIVEV--- 100
           FGESEANVR+IFDK             +++     G SS  A       L + + E+   
Sbjct: 560 FGESEANVREIFDKARQSAPCVLFFDELDSIANQRGSSSGDAGGAADRVLNQLLTEMDGM 619

Query: 101 --------------PNITWEDI---GGL----------EGVKRELQELVQ-------DVD 126
                         P+I    +   G L          EG +R++ + V        DVD
Sbjct: 620 NSKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEGSRRQIFKAVLRKSPVAGDVD 679

Query: 127 LNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDD 186
           ++ + K TNGFSGAD+TEICQRACK AIR++IE +I RER K A NP +   ME ED  D
Sbjct: 680 VDLLVKYTNGFSGADITEICQRACKYAIRENIEKDIERERVK-AENPDS---ME-EDAPD 734

Query: 187 PVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNP 238
           PVP ITRAHFEEAM++ARRSV+DADIRKY+ FAQTLQQSRGFG+ FRFP  P
Sbjct: 735 PVPSITRAHFEEAMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDRP 786

Source: Coccomyxa subellipsoidea C-169

Species: Coccomyxa subellipsoidea

Genus: Coccomyxa

Family: Coccomyxaceae

Class: Trebouxiophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|443694341|gb|ELT95504.1| hypothetical protein CAPTEDRAFT_161400, partial [Capitella teleta]

 Score =  278 bits (712), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 157/324 (48%), Positives = 191/324 (58%), Gaps = 64/324 (19%)

Query: 5   YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
           YPVEHP+KFLKFGM PS+GVLFYGPPGCGKTLLAKAIANECQANFIS+KGPELLTMWFGE
Sbjct: 493 YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 552

Query: 65  SEANVRDIF---------------------------------------------DKVTME 79
           SEANVRDIF                                             D +T +
Sbjct: 553 SEANVRDIFDKARSAAPCVLFFDELDSIAKARGGNAGDGGGAADRVINQLLTEMDGMTSK 612

Query: 80  NFRYAMGKSS------PSALR----ETIVEVPNITWEDIGGLEGVKRELQE--LVQDVDL 127
              + +G ++      P+ LR    + ++ +P    +D   ++ +K  L++  + +DVDL
Sbjct: 613 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIP--LPDDKSRIQILKANLRKSPIAKDVDL 670

Query: 128 NYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDP 187
           NY+A VT GFSGADLTEICQRACKLAIR+ IE EIR+ERE+                  P
Sbjct: 671 NYLAGVTQGFSGADLTEICQRACKLAIRECIEQEIRKERERQDNPDTDMDDDYD-----P 725

Query: 188 VPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPN 247
           VPEI R HFEEAM+FARRSV D DIRKYEMFAQTLQQSRG G NF  P    Q       
Sbjct: 726 VPEIRRDHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGLGNNFSSPLVALQEVKEAAR 785

Query: 248 SAPANESGTGGILLMFPSNPNQSQ 271
            A A  S +  ++ +  ++  + Q
Sbjct: 786 EAQAPPSNSHSLMTVMMTSTVRQQ 809

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|218184617|gb|EEC67044.1| hypothetical protein OsI_33786 [Oryza sativa Indica Group]

 Score =  273 bits (699), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 149/240 (62%), Positives = 177/240 (73%), Gaps = 23/240 (9%)

Query: 5   YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
           YPVEHPEKF KFGM PS+GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE
Sbjct: 501 YPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 560

Query: 65  SEANVRDIFDK----VTMENFRYAMGKSSPSALR----ETIVEVPNITWEDIGGLEGVKR 116
           SEANVR+IF        M +         P+ LR    + ++ +P    ++   L+  K 
Sbjct: 561 SEANVREIFRPGPPVCAMPDI------IDPALLRPGRLDQLIYIP--LPDEQSRLQIFKA 612

Query: 117 ELQE--LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPA 174
            L++  + +DVDLN +AK T GFSGAD+TEICQRACK AIR++IE +I RER +   NP 
Sbjct: 613 CLRKSPVAKDVDLNALAKYTQGFSGADITEICQRACKYAIRENIEKDIERER-RSKENPE 671

Query: 175 ASAAMETEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRF 234
           A   ME EDE D + EI  AHFEE+M++ARRSV+DADIRKY+ FAQTLQQSRGFG+ FRF
Sbjct: 672 A---ME-EDEVDDIAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 727

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|159476808|ref|XP_001696503.1| flagellar associated protein [Chlamydomonas reinhardtii] gi|158282728|gb|EDP08480.1| flagellar associated protein [Chlamydomonas reinhardtii]

 Score =  268 bits (685), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 151/285 (52%), Positives = 179/285 (62%), Gaps = 60/285 (21%)

Query: 5   YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
           YPVEHPEKF KFGM PS+GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE
Sbjct: 502 YPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 561

Query: 65  SEANVR----------------DIFDKVTMENFRYA--MGKSSPSALRETIVEVPNITWE 106
           SEANVR                D  D + ++    A   G ++   L + + E+  +  +
Sbjct: 562 SEANVREIFDKARGSAPCVLFFDELDSIAVQRGSSAGDAGGAADRVLNQLLTEMDGMNSK 621

Query: 107 D----IGGL--------------------------EGVKRELQE-------LVQDVDLNY 129
                IG                            EG +R++ +       +  DVD + 
Sbjct: 622 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEGSRRQIFKACLRKSPIAPDVDFDT 681

Query: 130 IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVP 189
           + K T+GFSGAD+TEICQRACK AIR+ IE  I RER + A NP A      EDE DPVP
Sbjct: 682 LVKFTHGFSGADMTEICQRACKSAIREDIEKNIERERRR-AENPDAM----MEDEPDPVP 736

Query: 190 EITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRF 234
            IT+AHFEEAM++ARRSV+DADIRKY+ FAQTLQQSRGFGT+FRF
Sbjct: 737 CITKAHFEEAMKYARRSVSDADIRKYQAFAQTLQQSRGFGTDFRF 781

Source: Chlamydomonas reinhardtii

Species: Chlamydomonas reinhardtii

Genus: Chlamydomonas

Family: Chlamydomonadaceae

Order: Chlamydomonadales

Class: Chlorophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|242036965|ref|XP_002465877.1| hypothetical protein SORBIDRAFT_01g047440 [Sorghum bicolor] gi|241919731|gb|EER92875.1| hypothetical protein SORBIDRAFT_01g047440 [Sorghum bicolor]

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 147/291 (50%), Positives = 176/291 (60%), Gaps = 59/291 (20%)

Query: 5   YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
           YPVEHP+ F KFGM PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE
Sbjct: 407 YPVEHPDMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 466

Query: 65  SEANVRDIF----------------DKVTMENFRYA--MGKSSPSALRETIVEVPNITWE 106
           SEANVRDIF                D + M+   +    G ++   L + + E+  ++ +
Sbjct: 467 SEANVRDIFDKARQSAPCVLFFDELDSIAMQRGSHVGDAGGAADRVLNQLLTEMDGMSAK 526

Query: 107 DIGGLEGVKRE-------------LQELV------------------------QDVDLNY 129
               + G                 L +L+                        ++VDL  
Sbjct: 527 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRQQIFKACLRKSPVAKNVDLGA 586

Query: 130 IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVP 189
           +A+ T GFSGAD+TEICQRACK AIR+ IE +I RER K   NP     M  +  DD  P
Sbjct: 587 LARFTAGFSGADITEICQRACKYAIREDIEKDIERER-KAKENPGE---MAVDCADDEPP 642

Query: 190 EITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ 240
           +I  AHFEE+MR+ARRSV+DADIRKY+ FAQTLQQSRGFGT FRFP+ P  
Sbjct: 643 QIGAAHFEESMRYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFPNRPQH 693

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242042265|ref|XP_002468527.1| hypothetical protein SORBIDRAFT_01g047410 [Sorghum bicolor] gi|241922381|gb|EER95525.1| hypothetical protein SORBIDRAFT_01g047410 [Sorghum bicolor]

 Score =  261 bits (666), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 146/291 (50%), Positives = 174/291 (59%), Gaps = 59/291 (20%)

Query: 5   YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
           YPVEHP+ F KFGM PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE
Sbjct: 477 YPVEHPDMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 536

Query: 65  SEANVRDIF----------------DKVTMENFRYA--MGKSSPSALRETIVEVPNITWE 106
           SEANVRDIF                D + M+   +    G ++   L + + E+  ++ +
Sbjct: 537 SEANVRDIFDKARQSAPCVLFFDELDSIAMQRGSHVGDAGGAADRVLNQLLTEMDGMSAK 596

Query: 107 DIGGLEGVKRE-------------LQELV------------------------QDVDLNY 129
               + G                 L +L+                        ++VDL  
Sbjct: 597 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRQQIFKACLRKSPVAKNVDLGA 656

Query: 130 IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVP 189
           +A+ T GFSGAD+TEICQRACK AIR+ IE +I RER K   NP     M  +  DD   
Sbjct: 657 LARFTAGFSGADITEICQRACKYAIREDIEKDIERER-KAKENPGE---MAVDCADDEPA 712

Query: 190 EITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ 240
           +I   HFEE+MR+ARRSV+DADIRKY+ FAQTLQQSRGFGT FRFP  P Q
Sbjct: 713 QIGAVHFEESMRYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFPIRPQQ 763

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|268532274|ref|XP_002631265.1| Hypothetical protein CBG03070 [Caenorhabditis briggsae]

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 147/289 (50%), Positives = 180/289 (62%), Gaps = 61/289 (21%)

Query: 5   YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL------ 58
           YPVEHPEK+LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFIS+KGPELL      
Sbjct: 500 YPVEHPEKYLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 559

Query: 59  ------------------TMWFGESEA----------------------NVRDIFDKVTM 78
                              ++F E ++                       V    D +  
Sbjct: 560 SEANVRDVFDKARAAAPCVLFFDELDSIAKARGSGAGGDAGGASDRVINQVLTEMDGMNA 619

Query: 79  ENFRYAMGKSS------PSALR----ETIVEVPNITWEDIGGLEGVKRELQE--LVQDVD 126
           +   + +G ++      P+ LR    + ++ +P    ++   L+ +K  L++  L +D+D
Sbjct: 620 KKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIP--LPDEASRLQILKASLRKTPLSKDLD 677

Query: 127 LNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDD 186
           L ++AK T GFSGADLTEICQRACKLAIR+SIE EIR E+E+          ME +D  D
Sbjct: 678 LTFLAKNTVGFSGADLTEICQRACKLAIRESIEKEIRIEKERQDRLTRGEELME-DDTVD 736

Query: 187 PVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFP 235
           PVPEITRAHFEEAM+FARRSV D DIRKYEMFAQTLQQSRGFG NF+FP
Sbjct: 737 PVPEITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKFP 785

Source: Caenorhabditis briggsae

Species: Caenorhabditis briggsae

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|308509910|ref|XP_003117138.1| CRE-CDC-48.1 protein [Caenorhabditis remanei] gi|308242052|gb|EFO86004.1| CRE-CDC-48.1 protein [Caenorhabditis remanei]

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 146/289 (50%), Positives = 180/289 (62%), Gaps = 61/289 (21%)

Query: 5   YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL------ 58
           YPVEHPEK+LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFIS+KGPELL      
Sbjct: 501 YPVEHPEKYLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 560

Query: 59  ------------------TMWFGESEA----------------------NVRDIFDKVTM 78
                              ++F E ++                       V    D +  
Sbjct: 561 SEANVRDVFDKARAAAPCVLFFDELDSIAKSRGGGAGGDAGGASDRVINQVLTEMDGMNA 620

Query: 79  ENFRYAMGKSS------PSALR----ETIVEVPNITWEDIGGLEGVKRELQE--LVQDVD 126
           +   + +G ++      P+ LR    + ++ +P    ++   L+ +K  L++  L +D+D
Sbjct: 621 KKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIP--LPDEASRLQILKASLRKTPLSKDLD 678

Query: 127 LNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDD 186
           L ++AK T GFSGADLTEICQRACKLAIR+SIE EIR E+++          ME +D  D
Sbjct: 679 LTFLAKNTVGFSGADLTEICQRACKLAIRESIEKEIRIEKDRQDRRARGEELME-DDTAD 737

Query: 187 PVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFP 235
           PVPEITRAHFEEAM+FARRSV D DIRKYEMFAQTLQQSRGFG NF+FP
Sbjct: 738 PVPEITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKFP 786

Source: Caenorhabditis remanei

Species: Caenorhabditis remanei

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
FB|FBgn0261014	801	TER94 "TER94" [Drosophila mela	0.444	0.166	0.710	1.6e-83
UNIPROTKB|G3X757	806	VCP "Transitional endoplasmic	0.428	0.158	0.717	2.7e-80
UNIPROTKB|Q3ZBT1	806	VCP "Transitional endoplasmic	0.428	0.158	0.717	2.7e-80
UNIPROTKB|P55072	806	VCP "Transitional endoplasmic	0.428	0.158	0.717	2.7e-80
MGI|MGI:99919	806	Vcp "valosin containing protei	0.428	0.158	0.717	2.7e-80
RGD|621595	806	Vcp "valosin-containing protei	0.428	0.158	0.717	2.7e-80
UNIPROTKB|E2RLQ9	822	VCP "Uncharacterized protein"	0.428	0.155	0.717	3.4e-80
UNIPROTKB|H9KYT1	538	LOC430766 "Uncharacterized pro	0.428	0.237	0.710	3.6e-80
UNIPROTKB|F1SIH8	808	VCP "Transitional endoplasmic	0.418	0.154	0.733	4.7e-80
UNIPROTKB|P03974	806	VCP "Transitional endoplasmic	0.428	0.158	0.717	5.5e-80

FB|FBgn0261014 TER94 "TER94" [Drosophila melanogaster (taxid:7227)]

 Score = 473 (171.6 bits), Expect = 1.6e-83, Sum P(3) = 1.6e-83
 Identities = 98/138 (71%), Positives = 110/138 (79%)

Query:   121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAME 180
             L ++VDL YIAKVT GFSGADLTEICQRACKLAIRQ+IE EIRRE+E+ A N   ++AM+
Sbjct:   663 LAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIRREKER-AENQ--NSAMD 719

Query:   181 TEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ 240
               DEDDPVPEIT AHFEEAM+FARRSV+D DIRKYEMFAQTLQQSRGFG NFRFP     
Sbjct:   720 M-DEDDPVPEITSAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGQNFRFPGQTGN 778

Query:   241 SQSGGPNSAPANESGTGG 258
             + SG  N+ P N  G  G
Sbjct:   779 T-SGSGNNLPVNSPGDNG 795

GO:0045169 "fusome" evidence=IDA;NAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0016887 "ATPase activity" evidence=NAS

GO:0005783 "endoplasmic reticulum" evidence=NAS

GO:0007030 "Golgi organization" evidence=IMP

GO:0007317 "regulation of pole plasm oskar mRNA localization" evidence=IMP

GO:0016320 "endoplasmic reticulum membrane fusion" evidence=ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=IMP

GO:0007029 "endoplasmic reticulum organization" evidence=IMP

GO:0045451 "pole plasm oskar mRNA localization" evidence=IMP

GO:0008103 "oocyte microtubule cytoskeleton polarization" evidence=IMP

GO:0008104 "protein localization" evidence=IMP

GO:0042052 "rhabdomere development" evidence=IMP

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0000502 "proteasome complex" evidence=NAS

GO:0006508 "proteolysis" evidence=IMP

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0030433 "ER-associated protein catabolic process" evidence=IMP

GO:0006200 "ATP catabolic process" evidence=IGI

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0043523 "regulation of neuron apoptotic process" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IMP

UNIPROTKB|G3X757 VCP "Transitional endoplasmic reticulum ATPase" [Bos taurus (taxid:9913)]

 Score = 460 (167.0 bits), Expect = 2.7e-80, Sum P(3) = 2.7e-80
 Identities = 99/138 (71%), Positives = 112/138 (81%)

Query:   121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAME 180
             + +DVDL ++AK+TNGFSGADLTEICQRACKLAIR+SIE+EIRRERE+   NP+A   ME
Sbjct:   666 VAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQT-NPSA---ME 721

Query:   181 TEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ 240
              E EDDPVPEI R HFEEAMRFARRSV+D DIRKYEMFAQTLQQSRGFG+ FRFPS  NQ
Sbjct:   722 VE-EDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPSG-NQ 778

Query:   241 SQSGGPNSAPANESGTGG 258
                GG   +  +  GTGG
Sbjct:   779 ---GGAGPSQGSGGGTGG 793

GO:0070842 "aggresome assembly" evidence=IEA

GO:0045732 "positive regulation of protein catabolic process" evidence=IEA

GO:0035861 "site of double-strand break" evidence=IEA

GO:0031593 "polyubiquitin binding" evidence=IEA

GO:0031334 "positive regulation of protein complex assembly" evidence=IEA

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IEA

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0006302 "double-strand break repair" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|Q3ZBT1 VCP "Transitional endoplasmic reticulum ATPase" [Bos taurus (taxid:9913)]

 Score = 460 (167.0 bits), Expect = 2.7e-80, Sum P(3) = 2.7e-80
 Identities = 99/138 (71%), Positives = 112/138 (81%)

Query:   121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAME 180
             + +DVDL ++AK+TNGFSGADLTEICQRACKLAIR+SIE+EIRRERE+   NP+A   ME
Sbjct:   666 VAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQT-NPSA---ME 721

Query:   181 TEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ 240
              E EDDPVPEI R HFEEAMRFARRSV+D DIRKYEMFAQTLQQSRGFG+ FRFPS  NQ
Sbjct:   722 VE-EDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPSG-NQ 778

Query:   241 SQSGGPNSAPANESGTGG 258
                GG   +  +  GTGG
Sbjct:   779 ---GGAGPSQGSGGGTGG 793

GO:0019985 "translesion synthesis" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0006974 "response to DNA damage stimulus" evidence=ISS

GO:0006302 "double-strand break repair" evidence=ISS

GO:0035861 "site of double-strand break" evidence=ISS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=ISS

GO:0030433 "ER-associated protein catabolic process" evidence=ISS

GO:0005829 "cytosol" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|P55072 VCP "Transitional endoplasmic reticulum ATPase" [Homo sapiens (taxid:9606)]

 Score = 460 (167.0 bits), Expect = 2.7e-80, Sum P(3) = 2.7e-80
 Identities = 99/138 (71%), Positives = 112/138 (81%)

Query:   121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAME 180
             + +DVDL ++AK+TNGFSGADLTEICQRACKLAIR+SIE+EIRRERE+   NP+A   ME
Sbjct:   666 VAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQT-NPSA---ME 721

Query:   181 TEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ 240
              E EDDPVPEI R HFEEAMRFARRSV+D DIRKYEMFAQTLQQSRGFG+ FRFPS  NQ
Sbjct:   722 VE-EDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPSG-NQ 778

Query:   241 SQSGGPNSAPANESGTGG 258
                GG   +  +  GTGG
Sbjct:   779 ---GGAGPSQGSGGGTGG 793

GO:0008289 "lipid binding" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0070842 "aggresome assembly" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISS

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=ISS

GO:0006281 "DNA repair" evidence=NAS

GO:0006974 "response to DNA damage stimulus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA;TAS

GO:0005829 "cytosol" evidence=IDA

GO:0006302 "double-strand break repair" evidence=IDA

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=NAS

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IDA

GO:0030433 "ER-associated protein catabolic process" evidence=IMP;TAS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=TAS

GO:0016887 "ATPase activity" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA;NAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0045184 "establishment of protein localization" evidence=TAS

GO:0019985 "translesion synthesis" evidence=IMP

GO:0035861 "site of double-strand break" evidence=IDA

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=IMP

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0000502 "proteasome complex" evidence=IDA

GO:0019903 "protein phosphatase binding" evidence=IPI

GO:0045732 "positive regulation of protein catabolic process" evidence=IDA

GO:0031334 "positive regulation of protein complex assembly" evidence=IDA

GO:0031593 "polyubiquitin binding" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:99919 Vcp "valosin containing protein" [Mus musculus (taxid:10090)]

 Score = 460 (167.0 bits), Expect = 2.7e-80, Sum P(3) = 2.7e-80
 Identities = 99/138 (71%), Positives = 112/138 (81%)

Query:   121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAME 180
             + +DVDL ++AK+TNGFSGADLTEICQRACKLAIR+SIE+EIRRERE+   NP+A   ME
Sbjct:   666 VAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQT-NPSA---ME 721

Query:   181 TEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ 240
              E EDDPVPEI R HFEEAMRFARRSV+D DIRKYEMFAQTLQQSRGFG+ FRFPS  NQ
Sbjct:   722 VE-EDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPSG-NQ 778

Query:   241 SQSGGPNSAPANESGTGG 258
                GG   +  +  GTGG
Sbjct:   779 ---GGAGPSQGSGGGTGG 793

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000502 "proteasome complex" evidence=ISO

GO:0005102 "receptor binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006281 "DNA repair" evidence=IEA

GO:0006302 "double-strand break repair" evidence=ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IGI

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0008289 "lipid binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISO

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=ISO

GO:0019903 "protein phosphatase binding" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0019985 "translesion synthesis" evidence=ISO

GO:0030433 "ER-associated protein catabolic process" evidence=ISO

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=ISO

GO:0031334 "positive regulation of protein complex assembly" evidence=ISO

GO:0031593 "polyubiquitin binding" evidence=ISO;IDA

GO:0032403 "protein complex binding" evidence=ISO

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0035861 "site of double-strand break" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0043234 "protein complex" evidence=IPI

GO:0043531 "ADP binding" evidence=ISO

GO:0045732 "positive regulation of protein catabolic process" evidence=ISO

GO:0051260 "protein homooligomerization" evidence=ISO

GO:0070842 "aggresome assembly" evidence=IGI

RGD|621595 Vcp "valosin-containing protein" [Rattus norvegicus (taxid:10116)]

 Score = 460 (167.0 bits), Expect = 2.7e-80, Sum P(3) = 2.7e-80
 Identities = 99/138 (71%), Positives = 112/138 (81%)

Query:   121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAME 180
             + +DVDL ++AK+TNGFSGADLTEICQRACKLAIR+SIE+EIRRERE+   NP+A   ME
Sbjct:   666 VAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQT-NPSA---ME 721

Query:   181 TEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ 240
              E EDDPVPEI R HFEEAMRFARRSV+D DIRKYEMFAQTLQQSRGFG+ FRFPS  NQ
Sbjct:   722 VE-EDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPSG-NQ 778

Query:   241 SQSGGPNSAPANESGTGG 258
                GG   +  +  GTGG
Sbjct:   779 ---GGAGPSQGSGGGTGG 793

GO:0000502 "proteasome complex" evidence=IEA;ISO

GO:0005102 "receptor binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IDA;IMP

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0006302 "double-strand break repair" evidence=ISO;ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IMP

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA;ISO

GO:0006974 "response to DNA damage stimulus" evidence=ISO;ISS

GO:0008289 "lipid binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO;ISS

GO:0016887 "ATPase activity" evidence=IDA

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=ISO;ISS

GO:0019903 "protein phosphatase binding" evidence=IEA;ISO

GO:0019904 "protein domain specific binding" evidence=IEA;ISO

GO:0019985 "translesion synthesis" evidence=ISO;ISS

GO:0030433 "ER-associated protein catabolic process" evidence=ISO;ISS

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IEA;ISO

GO:0031334 "positive regulation of protein complex assembly" evidence=IEA;ISO

GO:0031593 "polyubiquitin binding" evidence=IEA;ISO

GO:0032403 "protein complex binding" evidence=IPI

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO;IMP

GO:0035861 "site of double-strand break" evidence=ISO;ISS

GO:0042802 "identical protein binding" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0043234 "protein complex" evidence=ISO

GO:0043531 "ADP binding" evidence=IMP

GO:0045732 "positive regulation of protein catabolic process" evidence=ISO

GO:0051260 "protein homooligomerization" evidence=IDA

GO:0070842 "aggresome assembly" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|E2RLQ9 VCP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 460 (167.0 bits), Expect = 3.4e-80, Sum P(3) = 3.4e-80
 Identities = 99/138 (71%), Positives = 112/138 (81%)

Query:   121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAME 180
             + +DVDL ++AK+TNGFSGADLTEICQRACKLAIR+SIE+EIRRERE+   NP+A   ME
Sbjct:   682 VAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQT-NPSA---ME 737

Query:   181 TEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ 240
              E EDDPVPEI R HFEEAMRFARRSV+D DIRKYEMFAQTLQQSRGFG+ FRFPS  NQ
Sbjct:   738 VE-EDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPSG-NQ 794

Query:   241 SQSGGPNSAPANESGTGG 258
                GG   +  +  GTGG
Sbjct:   795 ---GGAGPSQGSGGGTGG 809

GO:0070842 "aggresome assembly" evidence=IEA

GO:0045732 "positive regulation of protein catabolic process" evidence=IEA

GO:0035861 "site of double-strand break" evidence=IEA

GO:0031593 "polyubiquitin binding" evidence=IEA

GO:0031334 "positive regulation of protein complex assembly" evidence=IEA

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IEA

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0006302 "double-strand break repair" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|H9KYT1 LOC430766 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 456 (165.6 bits), Expect = 3.6e-80, Sum P(2) = 3.6e-80
 Identities = 98/138 (71%), Positives = 112/138 (81%)

Query:   121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAME 180
             + +DVDL+++AK+TNGFSGADLTEICQRACKLAIR+SIE+EIRRERE+   NP+A   ME
Sbjct:   398 VAKDVDLDFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQT-NPSA---ME 453

Query:   181 TEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ 240
              E EDDPVPEI R HFEEAMRFARRSV+D DIRKYEMFAQTLQQSRGFG+ FRFPS  NQ
Sbjct:   454 VE-EDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPSG-NQ 510

Query:   241 SQSGGPNSAPANESGTGG 258
                GG   +     G+GG
Sbjct:   511 ---GGAGPSQGTGGGSGG 525

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1SIH8 VCP "Transitional endoplasmic reticulum ATPase" [Sus scrofa (taxid:9823)]

 Score = 458 (166.3 bits), Expect = 4.7e-80, Sum P(3) = 4.7e-80
 Identities = 99/135 (73%), Positives = 110/135 (81%)

Query:   124 DVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETED 183
             DVDL ++AK+TNGFSGADLTEICQRACKLAIR+SIE+EIRRERE+   NP+A   ME E 
Sbjct:   671 DVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQT-NPSA---MEVE- 725

Query:   184 EDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQS 243
             EDDPVPEI R HFEEAMRFARRSV+D DIRKYEMFAQTLQQSRGFG+ FRFPS  NQ   
Sbjct:   726 EDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPSG-NQ--- 780

Query:   244 GGPNSAPANESGTGG 258
             GG   +  +  GTGG
Sbjct:   781 GGAGPSQGSGGGTGG 795

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|P03974 VCP "Transitional endoplasmic reticulum ATPase" [Sus scrofa (taxid:9823)]

 Score = 460 (167.0 bits), Expect = 5.5e-80, Sum P(3) = 5.5e-80
 Identities = 99/138 (71%), Positives = 112/138 (81%)

Query:   121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAME 180
             + +DVDL ++AK+TNGFSGADLTEICQRACKLAIR+SIE+EIRRERE+   NP+A   ME
Sbjct:   666 VAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQT-NPSA---ME 721

Query:   181 TEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ 240
              E EDDPVPEI R HFEEAMRFARRSV+D DIRKYEMFAQTLQQSRGFG+ FRFPS  NQ
Sbjct:   722 VE-EDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPSG-NQ 778

Query:   241 SQSGGPNSAPANESGTGG 258
                GG   +  +  GTGG
Sbjct:   779 ---GGAGPSQGSGGGTGG 793

GO:0019985 "translesion synthesis" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0006974 "response to DNA damage stimulus" evidence=ISS

GO:0035861 "site of double-strand break" evidence=ISS

GO:0006302 "double-strand break repair" evidence=ISS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=ISS

GO:0030433 "ER-associated protein catabolic process" evidence=ISS

GO:0005829 "cytosol" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7KN62	TERA_DROME	No assigned EC number	0.7028	0.4448	0.1660	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	299
COG0464	494	COG0464, SpoVK, ATPases of the AAA+ class [Posttra	6e-40
TIGR01243	733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	1e-28
TIGR01243	733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	4e-26
COG1222	406	COG1222, RPT1, ATP-dependent 26S proteasome regula	4e-23
pfam00004	131	pfam00004, AAA, ATPase family associated with vari	5e-23
PRK03992	389	PRK03992, PRK03992, proteasome-activating nucleoti	4e-22
TIGR01242	364	TIGR01242, 26Sp45, 26S proteasome subunit P45 fami	8e-21
TIGR03689	512	TIGR03689, pup_AAA, proteasome ATPase	4e-20
PTZ00454	398	PTZ00454, PTZ00454, 26S protease regulatory subuni	8e-20
PTZ00361	438	PTZ00361, PTZ00361, 26 proteosome regulatory subun	6e-18
CHL00176	638	CHL00176, ftsH, cell division protein; Validated	1e-16
TIGR01241	495	TIGR01241, FtsH_fam, ATP-dependent metalloprotease	1e-15
COG1223	368	COG1223, COG1223, Predicted ATPase (AAA+ superfami	2e-15
COG0464	494	COG0464, SpoVK, ATPases of the AAA+ class [Posttra	5e-15
TIGR01243	733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	6e-13
PRK10733	644	PRK10733, hflB, ATP-dependent metalloprotease; Rev	8e-13
cd00009	151	cd00009, AAA, The AAA+ (ATPases Associated with a	9e-13
COG0465	596	COG0465, HflB, ATP-dependent Zn proteases [Posttra	1e-11
TIGR01243	733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	7e-11
COG0464	494	COG0464, SpoVK, ATPases of the AAA+ class [Posttra	1e-07
PRK00080	328	PRK00080, ruvB, Holliday junction DNA helicase Ruv	2e-07
smart00382	148	smart00382, AAA, ATPases associated with a variety	2e-07
pfam05496	231	pfam05496, RuvB_N, Holliday junction DNA helicase	5e-07
PRK13342	413	PRK13342, PRK13342, recombination factor protein R	6e-07
COG2255	332	COG2255, RuvB, Holliday junction resolvasome, heli	7e-07
TIGR01242	364	TIGR01242, 26Sp45, 26S proteasome subunit P45 fami	4e-06
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	4e-06
pfam09336	62	pfam09336, Vps4_C, Vps4 C terminal oligomerisation	8e-06
TIGR00635	305	TIGR00635, ruvB, Holliday junction DNA helicase, R	2e-05
COG2256	436	COG2256, MGS1, ATPase related to the helicase subu	2e-05
PRK03992	389	PRK03992, PRK03992, proteasome-activating nucleoti	3e-05
COG1224	450	COG1224, TIP49, DNA helicase TIP49, TBP-interactin	3e-05
PRK08116	268	PRK08116, PRK08116, hypothetical protein; Validate	3e-05
PRK13341	725	PRK13341, PRK13341, recombination factor protein R	6e-05
COG1222	406	COG1222, RPT1, ATP-dependent 26S proteasome regula	7e-05
pfam06068	395	pfam06068, TIP49, TIP49 C-terminus	1e-04
pfam13207	114	pfam13207, AAA_17, AAA domain	2e-04
TIGR01241	495	TIGR01241, FtsH_fam, ATP-dependent metalloprotease	3e-04
COG0467	260	COG0467, RAD55, RecA-superfamily ATPases implicate	3e-04
COG1484	254	COG1484, DnaC, DNA replication protein [DNA replic	3e-04
pfam00910	105	pfam00910, RNA_helicase, RNA helicase	4e-04
CHL00195	489	CHL00195, ycf46, Ycf46; Provisional	6e-04
COG0714	329	COG0714, COG0714, MoxR-like ATPases [General funct	6e-04
PRK03992	389	PRK03992, PRK03992, proteasome-activating nucleoti	0.001
pfam13238	128	pfam13238, AAA_18, AAA domain	0.001
pfam01078	207	pfam01078, Mg_chelatase, Magnesium chelatase, subu	0.001
pfam01057	271	pfam01057, Parvo_NS1, Parvovirus non-structural pr	0.001
PRK12402	337	PRK12402, PRK12402, replication factor C small sub	0.002
PRK06835	329	PRK06835, PRK06835, DNA replication protein DnaC;	0.003
COG0593	408	COG0593, DnaA, ATPase involved in DNA replication	0.003
pfam13401	124	pfam13401, AAA_22, AAA domain	0.004
TIGR03922	557	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPas	0.004

>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

 Score =  145 bits (367), Expect = 6e-40
 Identities = 74/272 (27%), Positives = 112/272 (41%), Gaps = 93/272 (34%)

Query: 5   YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
            P++ PE F K G++P +GVL YGPPG GKTLLAKA+A E ++ FISVKG ELL+ W GE
Sbjct: 260 TPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGE 319

Query: 65  SEANVRDIFDKVTME------------------------------NFRYAMGKSSPS--- 91
           SE N+R++F+K                                       +     +   
Sbjct: 320 SEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGV 379

Query: 92  -ALRET------------------IVEVPNITWEDIGGLEGVKRELQE----LVQDVDLN 128
             +  T                  ++ VP    E    LE  K  L++    L +DVDL 
Sbjct: 380 LVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE--ERLEIFKIHLRDKKPPLAEDVDLE 437

Query: 129 YIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPV 188
            +A++T G+SGAD+  + + A   A+R++                               
Sbjct: 438 ELAEITEGYSGADIAALVREAALEALREARRR---------------------------- 469

Query: 189 PEITRAHFEEAMRFARRSVNDADIRKYEMFAQ 220
            E+T   F +A++  + SV       YE + +
Sbjct: 470 -EVTLDDFLDALKKIKPSVT------YEEWKE 494

Length = 494

>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily

 Score =  115 bits (288), Expect = 1e-28
 Identities = 83/266 (31%), Positives = 125/266 (46%), Gaps = 89/266 (33%)

Query: 6   PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
           P++HPE F   G++P +GVL YGPPG GKTLLAKA+ANE  A FIS+ GPE+++ ++GES
Sbjct: 197 PMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGES 256

Query: 66  EANVRDIF-----------------------DKVTMENFRYAMGK--------------- 87
           E  +R+IF                       ++VT E  +  + +               
Sbjct: 257 EERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316

Query: 88  -----SSPSAL-----------RETIVEVPNITWEDIGGLEGVKRELQELVQ-------- 123
                + P AL           RE ++ VP+            KR  +E+++        
Sbjct: 317 VIGATNRPDALDPALRRPGRFDREIVIRVPD------------KRARKEILKVHTRNMPL 364

Query: 124 --DVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSI-ETEIRREREKLAGNPAASAAME 180
             DVDL+ +A+VT+GF GADL  + + A   A+R+ I E +I  E E++   PA     E
Sbjct: 365 AEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEI---PA-----E 416

Query: 181 TEDEDDPVPEITRAHFEEAMRFARRS 206
              E     ++T   F EA++    S
Sbjct: 417 VLKE----LKVTMKDFMEALKMVEPS 438

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily

 Score =  107 bits (269), Expect = 4e-26
 Identities = 43/71 (60%), Positives = 57/71 (80%)

Query: 5   YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
           +P++HPE F K G++P +GVL +GPPG GKTLLAKA+A E  ANFI+V+GPE+L+ W GE
Sbjct: 471 WPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGE 530

Query: 65  SEANVRDIFDK 75
           SE  +R+IF K
Sbjct: 531 SEKAIREIFRK 541

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 97.7 bits (244), Expect = 4e-23
 Identities = 36/68 (52%), Positives = 48/68 (70%)

Query: 6   PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
           P+++PE F + G+ P +GVL YGPPG GKTLLAKA+AN+  A FI V G EL+  + GE 
Sbjct: 170 PLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEG 229

Query: 66  EANVRDIF 73
              VR++F
Sbjct: 230 ARLVRELF 237

Length = 406

>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA)

 Score = 91.5 bits (228), Expect = 5e-23
 Identities = 27/53 (50%), Positives = 37/53 (69%)

Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKV 76
          +L YGPPG GKT LAKA+A E  A FI + G EL++ + GESE  +R++F+  
Sbjct: 1  LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAA 53

AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131

>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional

 Score = 94.9 bits (237), Expect = 4e-22
 Identities = 36/70 (51%), Positives = 49/70 (70%)

Query: 5   YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
            P++ PE F + G++P +GVL YGPPG GKTLLAKA+A+E  A FI V G EL+  + GE
Sbjct: 149 LPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGE 208

Query: 65  SEANVRDIFD 74
               VR++F+
Sbjct: 209 GARLVRELFE 218

Length = 389

>gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family

 Score = 90.6 bits (225), Expect = 8e-21
 Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 15/125 (12%)

Query: 6   PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
           P++HPE F + G++P +GVL YGPPG GKTLLAKA+A+E  A FI V G EL+  + GE 
Sbjct: 141 PLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEG 200

Query: 66  EANVRDIFDKVTMENFRYAMGKSSPSALRETIVEVPNI----TWEDIGGLEGVKRELQEL 121
              VR+I        F  A  K +PS +   I E+  I    T     G   V+R L +L
Sbjct: 201 ARLVREI--------FELAKEK-APSII--FIDEIDAIAAKRTDSGTSGDREVQRTLMQL 249

Query: 122 VQDVD 126
           + ++D
Sbjct: 250 LAELD 254

Many proteins may score above the trusted cutoff because an internal. Length = 364

>gnl|CDD|200312 TIGR03689, pup_AAA, proteasome ATPase

 Score = 89.8 bits (223), Expect = 4e-20
 Identities = 37/80 (46%), Positives = 54/80 (67%), Gaps = 10/80 (12%)

Query: 6   PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGP 55
           P  HPE + ++G++P +GVL YGPPGCGKTL+AKA+AN            ++ F+++KGP
Sbjct: 201 PFLHPELYREYGLKPPKGVLLYGPPGCGKTLIAKAVANSLAARIGAEGGGKSYFLNIKGP 260

Query: 56  ELLTMWFGESEANVRDIFDK 75
           ELL  + GE+E  +R IF +
Sbjct: 261 ELLNKYVGETERQIRLIFQR 280

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 512

>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional

 Score = 88.3 bits (219), Expect = 8e-20
 Identities = 49/125 (39%), Positives = 68/125 (54%), Gaps = 15/125 (12%)

Query: 6   PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
           P+  PE + + G+ P RGVL YGPPG GKT+LAKA+A+   A FI V G E +  + GE 
Sbjct: 164 PLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEG 223

Query: 66  EANVRDIFDKVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQ----EL 121
              VRD+F ++  EN        +PS +   I EV +I  +      G  RE+Q    EL
Sbjct: 224 PRMVRDVF-RLAREN--------APSII--FIDEVDSIATKRFDAQTGADREVQRILLEL 272

Query: 122 VQDVD 126
           +  +D
Sbjct: 273 LNQMD 277

Length = 398

>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like protein; Provisional

 Score = 82.9 bits (205), Expect = 6e-18
 Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 1/76 (1%)

Query: 5   YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
            P+ HPE +   G++P +GV+ YGPPG GKTLLAKA+ANE  A F+ V G EL+  + G+
Sbjct: 201 LPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGD 260

Query: 65  SEANVRDIFDKVTMEN 80
               VR++F +V  EN
Sbjct: 261 GPKLVRELF-RVAEEN 275

Length = 438

>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated

 Score = 79.3 bits (196), Expect = 1e-16
 Identities = 34/66 (51%), Positives = 42/66 (63%)

Query: 10  PEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANV 69
           PE+F   G +  +GVL  GPPG GKTLLAKAIA E +  F S+ G E + M+ G   A V
Sbjct: 205 PERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARV 264

Query: 70  RDIFDK 75
           RD+F K
Sbjct: 265 RDLFKK 270

Length = 638

>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH

 Score = 76.9 bits (190), Expect = 1e-15
 Identities = 31/66 (46%), Positives = 42/66 (63%)

Query: 10  PEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANV 69
           P KF K G +  +GVL  GPPG GKTLLAKA+A E    F S+ G + + M+ G   + V
Sbjct: 77  PSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRV 136

Query: 70  RDIFDK 75
           RD+F++
Sbjct: 137 RDLFEQ 142

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 495

>gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]

 Score = 75.2 bits (185), Expect = 2e-15
 Identities = 55/219 (25%), Positives = 89/219 (40%), Gaps = 76/219 (34%)

Query: 7   VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 66
           +E+PE+F  +     + VLFYGPPG GKT++AKA+ANE +   + VK  EL+    G+  
Sbjct: 140 LENPERFGDWA---PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGA 196

Query: 67  ANVRDIFDKVTMENFRYAMGKSSPS-----------------ALRETIVEVPNITWEDIG 109
             + +++++           K++P                   LR  + E+ N    ++ 
Sbjct: 197 RRIHELYERAR---------KAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELD 247

Query: 110 GL---EGV------------------------------KRELQELVQ----------DVD 126
           G+   EGV                                E  E+++          D D
Sbjct: 248 GIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD 307

Query: 127 LNYIAKVTNGFSGADLTE-ICQRACKLAI---RQSIETE 161
           L Y+A  T G SG D+ E + + A   AI   R+ +E E
Sbjct: 308 LRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVERE 346

Length = 368

>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

 Score = 74.5 bits (183), Expect = 5e-15
 Identities = 61/236 (25%), Positives = 92/236 (38%), Gaps = 42/236 (17%)

Query: 5   YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
            P++ PE F K G++P +GVL +GPPG GKTLLA+A+ANE  A F+S+ GPE+L+ + GE
Sbjct: 2   LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGE 60

Query: 65  SEANVRDIFDKVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQD 124
           SE  +R++F++   +     +      AL       P  + +       V  +L  L+  
Sbjct: 61  SELRLRELFEEAE-KLAPSIIFIDEIDAL------APKRSSDQGEVERRVVAQLLALMDG 113

Query: 125 VDLNYIA-----KVTNGFSGADLT------EICQRACKLAIRQSIETEIRR--------- 164
           +    +         +G   A         EI       A R  I     R         
Sbjct: 114 LKRGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGPPGT 173

Query: 165 --------------EREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARRS 206
                         +   LA   A        D       +T   FEEA++    S
Sbjct: 174 GKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPS 229

Length = 494

>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily

 Score = 68.8 bits (168), Expect = 6e-13
 Identities = 31/62 (50%), Positives = 43/62 (69%), Gaps = 2/62 (3%)

Query: 64  ESEANVRDIFD--KVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQEL 121
           E+E    ++    KVTM++F  A+    PSA+RE +VEVPN+ W DIGGLE VK+EL+E 
Sbjct: 409 EAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREA 468

Query: 122 VQ 123
           V+
Sbjct: 469 VE 470

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed

 Score = 68.1 bits (166), Expect = 8e-13
 Identities = 56/204 (27%), Positives = 80/204 (39%), Gaps = 55/204 (26%)

Query: 7   VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 66
           +  P +F K G +  +GVL  GPPG GKTLLAKAIA E +  F ++ G + + M+ G   
Sbjct: 171 LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGA 230

Query: 67  ANVRDIFDK----------------------------------------VTMENFRYAMG 86
           + VRD+F++                                        V M+ F    G
Sbjct: 231 SRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 290

Query: 87  ------KSSPSALRETIVEVPNITWEDIGGLEGVKRELQ---------ELVQDVDLNYIA 131
                  + P  L   ++       + + GL  V+   Q          L  D+D   IA
Sbjct: 291 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIA 350

Query: 132 KVTNGFSGADLTEICQRACKLAIR 155
           + T GFSGADL  +   A   A R
Sbjct: 351 RGTPGFSGADLANLVNEAALFAAR 374

Length = 644

>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

 Score = 64.5 bits (157), Expect = 9e-13
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 19 QPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVRDIFDK 75
           P + +L YGPPG GKT LA+AIANE     A F+ +   +LL             +   
Sbjct: 17 PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLL 76

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151

>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 29/70 (41%), Positives = 45/70 (64%)

Query: 6   PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
            +++P+K+   G +  +GVL  GPPG GKTLLAKA+A E    F S+ G + + M+ G  
Sbjct: 168 FLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVG 227

Query: 66  EANVRDIFDK 75
            + VRD+F++
Sbjct: 228 ASRVRDLFEQ 237

Length = 596

>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily

 Score = 62.2 bits (151), Expect = 7e-11
 Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 12/104 (11%)

Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAME 180
           L +DVDL  +A++T G++GAD+  +C+ A   A+R+SI            G+PA      
Sbjct: 640 LAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESI------------GSPAKEKLEV 687

Query: 181 TEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQ 224
            E+E     ++   HF EA++  + SV+  D+ +YE  A+ L++
Sbjct: 688 GEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELKR 731

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 17/104 (16%)

Query: 25  LFYGPPGCGKTLLAKAIANE-CQANFISVKGPELLTMWFGESEANVRDIFD-----KVTM 78
           +F GPPG GKTL A+ +         ++ +                R I        VT 
Sbjct: 166 MFLGPPGTGKTLAARTVGKSGADLGALAKEA---------ALRELRRAIDLVGEYIGVTE 216

Query: 79  ENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELV 122
           ++F  A+ K  PS  R  + E  ++T +DIGGLE  K EL+E +
Sbjct: 217 DDFEEALKKVLPS--RGVLFEDEDVTLDDIGGLEEAKEELKEAI 258

Length = 494

>gnl|CDD|234619 PRK00080, ruvB, Holliday junction DNA helicase RuvB; Reviewed

 Score = 51.3 bits (124), Expect = 2e-07
 Identities = 20/34 (58%), Positives = 20/34 (58%)

Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 57
          VL YGPPG GKT LA  IANE   N     GP L
Sbjct: 54 VLLYGPPGLGKTTLANIIANEMGVNIRITSGPAL 87

Length = 328

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 48.9 bits (116), Expect = 2e-07
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVK 53
          P   +L  GPPG GKT LA+A+A E       V 
Sbjct: 1  PGEVILIVGPPGSGKTTLARALARELGPPGGGVI 34

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|203260 pfam05496, RuvB_N, Holliday junction DNA helicase ruvB N-terminus

 Score = 49.4 bits (119), Expect = 5e-07
 Identities = 20/34 (58%), Positives = 20/34 (58%)

Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 57
          VL YGPPG GKT LA  IANE   N     GP L
Sbjct: 53 VLLYGPPGLGKTTLANIIANEMGVNIRITSGPAL 86

The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein. Length = 231

>gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed

 Score = 50.1 bits (121), Expect = 6e-07
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISV 52
          ++ +GPPG GKT LA+ IA    A F ++
Sbjct: 39 MILWGPPGTGKTTLARIIAGATDAPFEAL 67

Length = 413

>gnl|CDD|225164 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

 Score = 49.5 bits (119), Expect = 7e-07
 Identities = 19/34 (55%), Positives = 20/34 (58%)

Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 57
          VL +GPPG GKT LA  IANE   N     GP L
Sbjct: 55 VLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL 88

Length = 332

>gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 32/73 (43%), Positives = 41/73 (56%), Gaps = 8/73 (10%)

Query: 90  PSALR----ETIVEVPNITWEDIGGLE--GVKRELQELVQDVDLNYIAKVTNGFSGADLT 143
           P+ LR    + I+EVP   +E  G LE   +     +L +DVDL  IAK+T G SGADL 
Sbjct: 276 PALLRPGRFDRIIEVPLPDFE--GRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLK 333

Query: 144 EICQRACKLAIRQ 156
            IC  A   AIR+
Sbjct: 334 AICTEAGMFAIRE 346

Many proteins may score above the trusted cutoff because an internal. Length = 364

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 15/26 (57%), Positives = 20/26 (76%)

Query: 19 QPSRGVLFYGPPGCGKTLLAKAIANE 44
          +P + +L YGPPG GKT LA A+AN+
Sbjct: 37 KPKKALLLYGPPGVGKTSLAHALAND 62

Length = 482

>gnl|CDD|204202 pfam09336, Vps4_C, Vps4 C terminal oligomerisation domain

 Score = 42.6 bits (101), Expect = 8e-06
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 170 AGNPAA--SAAMETEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMF 218
            G+P A     M+ E++    P +T   F +A+   + +V+  D+ K+E F
Sbjct: 7   PGDPGAIEMTWMDIEEDKLLEPPLTMKDFIKALATTKPTVSKDDLEKHEEF 57

This domain is found at the C terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation. Length = 62

>gnl|CDD|129721 TIGR00635, ruvB, Holliday junction DNA helicase, RuvB subunit

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 19/34 (55%), Positives = 20/34 (58%)

Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 57
          +L YGPPG GKT LA  IANE   N     GP L
Sbjct: 33 LLLYGPPGLGKTTLAHIIANEMGVNLKITSGPAL 66

All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions [DNA metabolism, DNA replication, recombination, and repair]. Length = 305

>gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 26 FYGPPGCGKTLLAKAIANECQANFISV 52
           +GPPG GKT LA+ IA    A F ++
Sbjct: 53 LWGPPGTGKTTLARLIAGTTNAAFEAL 79

Length = 436

>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 124 DVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRE 165
           DVDL  +A++T G SGADL  IC  A   AIR    TE+  E
Sbjct: 323 DVDLEELAELTEGASGADLKAICTEAGMFAIRDD-RTEVTME 363

Length = 389

>gnl|CDD|224145 COG1224, TIP49, DNA helicase TIP49, TBP-interacting protein [Transcription]

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 11/77 (14%)

Query: 12  KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLTMWFGESEANV 69
           K +K G    RG+L  GPPG GKT LA  IA E   +  F+++ G E+ ++   ++EA  
Sbjct: 56  KMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEA-- 113

Query: 70  RDIFDKVTMENFRYAMG 86
                    +  R A+G
Sbjct: 114 -------LTQALRRAIG 123

Length = 450

>gnl|CDD|236153 PRK08116, PRK08116, hypothetical protein; Validated

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 21  SRGVLFYGPPGCGKTLLAKAIANECQANFISVK 53
           + G+L +G  G GKT LA  IANE     + V 
Sbjct: 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVI 146

Length = 268

>gnl|CDD|237354 PRK13341, PRK13341, recombination factor protein RarA/unknown domain fusion protein; Reviewed

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 16/28 (57%), Positives = 21/28 (75%)

Query: 25 LFYGPPGCGKTLLAKAIANECQANFISV 52
          + YGPPG GKT LA+ IAN  +A+F S+
Sbjct: 56 ILYGPPGVGKTTLARIIANHTRAHFSSL 83

Length = 725

>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 20/35 (57%), Positives = 23/35 (65%)

Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIR 155
           L  DVDL  +A++T GFSGADL  IC  A   AIR
Sbjct: 340 LADDVDLELLARLTEGFSGADLKAICTEAGMFAIR 374

Length = 406

>gnl|CDD|147949 pfam06068, TIP49, TIP49 C-terminus

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 11/67 (16%)

Query: 22  RGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLTMWFGESEANVRDIFDKVTME 79
           R VL  GPPG GKT LA AI+ E   +  F  + G E+ ++   ++EA           +
Sbjct: 51  RAVLIAGPPGTGKTALAIAISKELGEDTPFCPISGSEVYSLEMKKTEA---------LTQ 101

Query: 80  NFRYAMG 86
            FR A+G
Sbjct: 102 AFRKAIG 108

This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases. Length = 395

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 12/110 (10%)

Query: 24  VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG----------ESEANVRDIF 73
           +L  GPPG GK+ LAK +A +     IS+                          + +I 
Sbjct: 2   ILITGPPGSGKSTLAKKLAEKLGIPVISLDDLLREEGLAELDDGELDDIDIDLELLEEIL 61

Query: 74  DKVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQ 123
           D++  + +     + S   LR    E   + + D+       R L+  +Q
Sbjct: 62  DELAKQEWVIDGVRESTLELRLE--EADLVVFLDLPLPACRFRLLKRRLQ 109

Length = 114

>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIR 163
           L  DVDL  +A+ T GFSGADL  +   A  LA R++ +TEI 
Sbjct: 243 LAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN-KTEIT 284

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 495

>gnl|CDD|223543 COG0467, RAD55, RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 18/117 (15%)

Query: 17  GMQPSRGVLFYGPPGCGKTLLAKAIANECQAN------FISV-KGPELLTMWFGESEANV 69
           G+     VL  GPPG GKT+ A     E  A       ++S  + PE L         ++
Sbjct: 19  GLPRGSVVLITGPPGTGKTIFALQFLYE-GAREGEPVLYVSTEESPEELLENARSFGWDL 77

Query: 70  RDIFDKVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVD 126
               +K          GK +      +   + +I   D   LE +   ++E+V+   
Sbjct: 78  EVYIEK----------GKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEG 124

Length = 260

>gnl|CDD|224401 COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair]

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 16/30 (53%), Positives = 18/30 (60%)

Query: 23  GVLFYGPPGCGKTLLAKAIANECQANFISV 52
            ++  GPPG GKT LA AI NE     ISV
Sbjct: 107 NLVLLGPPGVGKTHLAIAIGNELLKAGISV 136

Length = 254

>gnl|CDD|216186 pfam00910, RNA_helicase, RNA helicase

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 12/21 (57%), Positives = 15/21 (71%)

Query: 24 VLFYGPPGCGKTLLAKAIANE 44
          +  YGPPGCGK+ LAK +A  
Sbjct: 1  IWLYGPPGCGKSTLAKYLARA 21

This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses. Length = 105

>gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 22/60 (36%), Positives = 34/60 (56%)

Query: 11  EKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVR 70
           ++   +G+   RG+L  G  G GK+L AKAIAN+ Q   + +   +L     GESE+ +R
Sbjct: 249 KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMR 308

Length = 489

>gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only]

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 22 RGVLFYGPPGCGKTLLAKAIANECQANFISV 52
            VL  GPPG GKTLLA+A+A      F+ +
Sbjct: 44 GHVLLEGPPGVGKTLLARALARALGLPFVRI 74

Length = 329

>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional

 Score = 40.2 bits (95), Expect = 0.001
 Identities = 15/27 (55%), Positives = 22/27 (81%)

Query: 97  IVEVPNITWEDIGGLEGVKRELQELVQ 123
           ++E PN+T+EDIGGLE   RE++E V+
Sbjct: 122 VIESPNVTYEDIGGLEEQIREVREAVE 148

Length = 389

>gnl|CDD|222000 pfam13238, AAA_18, AAA domain

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 1/76 (1%)

Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISV-KGPELLTMWFGESEANVRDIFDKVTMENFR 82
          +L  G PG GKT LAK +A         + K   L+     E     + + +    +   
Sbjct: 1  ILITGTPGSGKTTLAKELAERLGDVLRDLAKENGLVLELDEEITDESKRLDEDKLAKLLD 60

Query: 83 YAMGKSSPSALRETIV 98
                   A  E ++
Sbjct: 61 KLEKIIEELAEGENVI 76

Length = 128

>gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI

 Score = 39.0 bits (92), Expect = 0.001
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 24 VLFYGPPGCGKTLLAKAI 41
          +L  GPPG GKT+LAK +
Sbjct: 25 LLMIGPPGSGKTMLAKRL 42

Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa. Length = 207

>gnl|CDD|216270 pfam01057, Parvo_NS1, Parvovirus non-structural protein NS1

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 13/20 (65%), Positives = 15/20 (75%)

Query: 24  VLFYGPPGCGKTLLAKAIAN 43
           V FYGP   GKT LA+AIA+
Sbjct: 116 VWFYGPASTGKTNLAQAIAH 135

This family also contains the NS2 protein. Parvoviruses encode two non-structural proteins, NS1 and NS2. The mRNA for NS2 contains the coding sequence for the first 87 amino acids of NS1, then by an alternative splicing mechanism mRNA from a different reading frame, encoding the last 78 amino acids, makes up the full length of the NS2 mRNA. NS1, is the major non-structural protein. It is essential for DNA replication. It is an 83-kDa nuclear phosphoprotein. It has DNA helicase and ATPase activity. Length = 271

>gnl|CDD|237090 PRK12402, PRK12402, replication factor C small subunit 2; Reviewed

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 29/107 (27%), Positives = 40/107 (37%), Gaps = 29/107 (27%)

Query: 6   PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANE-----CQANFISVKGPELLTM 60
            VE   + +     P   +L  GPPG GKT   +A+A E      + NF           
Sbjct: 23  VVERLSRAVDSPNLPH--LLVQGPPGSGKTAAVRALARELYGDPWENNFT---------- 70

Query: 61  WFGESEANVRDIFD---KVTMENFRYAM----GKSSPSALRETIVEV 100
                E NV D FD   K  +E+ R+A      K   S+  +    V
Sbjct: 71  -----EFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHV 112

Length = 337

>gnl|CDD|235871 PRK06835, PRK06835, DNA replication protein DnaC; Validated

 Score = 38.3 bits (90), Expect = 0.003
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 20  PSRGVLFYGPPGCGKTLLAKAIANE 44
            +  +LFYG  G GKT L+  IA E
Sbjct: 182 NNENLLFYGNTGTGKTFLSNCIAKE 206

Length = 329

>gnl|CDD|223666 COG0593, DnaA, ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 24  VLFYGPPGCGKTLLAKAIANECQANFISVK 53
           +  YG  G GKT L +AI NE  AN  + +
Sbjct: 116 LFIYGGVGLGKTHLLQAIGNEALANGPNAR 145

Length = 408

>gnl|CDD|222104 pfam13401, AAA_22, AAA domain

 Score = 36.1 bits (84), Expect = 0.004
 Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 11/84 (13%)

Query: 18  MQPSRGVLFYGPPGCGKTLLAKAIANE-CQANFISVKGPELLTMWFGESEANVRDIFDKV 76
            + +   +  G  G GKT L + +A +      + V+ P L T          +D+  K+
Sbjct: 1   RRGAGIGVLTGESGSGKTTLLRRLARQLPNRRVVYVEAPSLGTP---------KDLLRKI 51

Query: 77  TMENFRYAMGKSSPSALRETIVEV 100
            +      +   + + L E I++ 
Sbjct: 52  -LRALGLPLSGGTTAELLEAILDA 74

Length = 124

>gnl|CDD|188437 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 19  QPSRGVLFYGPPGCGKTLLAKAIANE-C------QANFISVKGPELLTMWFGESEANVRD 71
           Q S  +LF GPPG GKT +A+ +A   C      +     V   +L+  + GESEA   +
Sbjct: 310 QTSNHMLFAGPPGTGKTTIARVVAKIYCGLGVLRKPLVREVSRADLIGQYIGESEAKTNE 369

Query: 72  IFDK 75
           I D 
Sbjct: 370 IIDS 373

This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc [Protein fate, Protein and peptide secretion and trafficking]. Length = 557

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	299
KOG0733|consensus	802		100.0
KOG0736|consensus	953		100.0
KOG0730|consensus	693		100.0
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	100.0
KOG0730|consensus	693		100.0
KOG0738|consensus	491		100.0
KOG0733|consensus	802		99.98
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	99.97
KOG0735|consensus	952		99.97
KOG0739|consensus	439		99.96
KOG0736|consensus	953		99.95
KOG0741|consensus	744		99.95
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	99.93
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.92
KOG0737|consensus	386		99.92
KOG0728|consensus	404		99.9
KOG0735|consensus	952		99.9
KOG0729|consensus	435		99.89
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	99.89
KOG0727|consensus	408		99.89
KOG0740|consensus	428		99.88
KOG0726|consensus	440		99.88
KOG0652|consensus	424		99.88
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	99.88
CHL00195	489	ycf46 Ycf46; Provisional	99.86
PRK03992	389	proteasome-activating nucleotidase; Provisional	99.86
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	99.84
KOG0731|consensus	774		99.83
KOG0734|consensus	752		99.8
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	99.8
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	99.77
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	99.77
KOG0651|consensus	388		99.76
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	99.76
CHL00206	2281	ycf2 Ycf2; Provisional	99.74
KOG0732|consensus	1080		99.71
CHL00176	638	ftsH cell division protein; Validated	99.71
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	99.67
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	99.66
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	99.66
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	99.52
KOG0739|consensus	439		99.5
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.41
KOG0737|consensus	386		99.4
KOG0738|consensus	491		99.37
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.37
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	99.34
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.34
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.32
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.32
KOG0728|consensus	404		99.31
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	99.3
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.29
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.25
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.23
KOG0727|consensus	408		99.22
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.22
PRK03992	389	proteasome-activating nucleotidase; Provisional	99.21
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.2
KOG0726|consensus	440		99.2
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	99.2
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.2
KOG0729|consensus	435		99.18
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.18
KOG0652|consensus	424		99.16
KOG0744|consensus	423		99.16
COG1123	539	ATPase components of various ABC-type transport sy	99.15
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.07
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	99.05
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.05
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.04
CHL00195	489	ycf46 Ycf46; Provisional	99.04
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.04
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.02
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.01
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.01
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	98.99
COG1127	263	Ttg2A ABC-type transport system involved in resist	98.98
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	98.98
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	98.97
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	98.96
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	98.95
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	98.94
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	98.94
COG1123	539	ATPase components of various ABC-type transport sy	98.93
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	98.93
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	98.93
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	98.93
KOG0651|consensus	388		98.92
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	98.92
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.91
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	98.91
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	98.91
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.9
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.9
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	98.9
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.9
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	98.9
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.9
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	98.9
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	98.89
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	98.89
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.88
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	98.88
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	98.88
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	98.88
PRK10908	222	cell division protein FtsE; Provisional	98.88
CHL00095	821	clpC Clp protease ATP binding subunit	98.88
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.87
PF00004	132	AAA: ATPase family associated with various cellula	98.87
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	98.87
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.87
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	98.87
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	98.85
cd03269	210	ABC_putative_ATPase This subfamily is involved in	98.85
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	98.85
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	98.85
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	98.85
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	98.85
KOG0742|consensus	630		98.85
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.84
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	98.84
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	98.84
COG4172	534	ABC-type uncharacterized transport system, duplica	98.84
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.84
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	98.84
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	98.84
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	98.83
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.83
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.83
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	98.83
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.83
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	98.82
COG4559	259	ABC-type hemin transport system, ATPase component	98.82
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	98.82
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	98.82
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	98.82
COG4181	228	Predicted ABC-type transport system involved in ly	98.82
KOG0740|consensus	428		98.81
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	98.81
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.81
KOG0734|consensus	752		98.81
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.81
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.81
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	98.81
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	98.8
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	98.8
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	98.8
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	98.8
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	98.8
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	98.79
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.79
PRK13537	306	nodulation ABC transporter NodI; Provisional	98.78
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.78
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.78
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	98.78
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.78
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	98.78
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.78
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	98.78
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.77
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.77
KOG0732|consensus	1080		98.77
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	98.77
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	98.77
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.77
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.77
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.76
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.76
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.76
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	98.76
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.76
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	98.76
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	98.76
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	98.75
COG4987	573	CydC ABC-type transport system involved in cytochr	98.75
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.75
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	98.75
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	98.75
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.75
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	98.75
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	98.74
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	98.74
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	98.74
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	98.74
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	98.74
COG0411	250	LivG ABC-type branched-chain amino acid transport	98.74
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	98.73
PRK13536	340	nodulation factor exporter subunit NodI; Provision	98.73
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	98.73
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	98.73
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	98.73
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	98.73
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	98.73
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	98.73
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	98.73
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	98.72
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.72
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	98.72
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	98.72
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	98.72
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	98.72
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	98.72
PRK10938	490	putative molybdenum transport ATP-binding protein	98.72
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.72
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	98.71
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	98.71
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	98.71
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	98.71
cd03299	235	ABC_ModC_like Archeal protein closely related to M	98.71
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	98.71
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	98.7
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	98.7
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	98.7
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	98.7
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.7
PRK09984	262	phosphonate/organophosphate ester transporter subu	98.69
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.69
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	98.69
cd03234	226	ABCG_White The White subfamily represents ABC tran	98.69
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	98.69
COG0410	237	LivF ABC-type branched-chain amino acid transport	98.69
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	98.69
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	98.68
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	98.68
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	98.68
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.68
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.68
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	98.68
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	98.67
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	98.67
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	98.67
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	98.67
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	98.67
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	98.67
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	98.67
PRK03695	248	vitamin B12-transporter ATPase; Provisional	98.67
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	98.66
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	98.66
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.66
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	98.66
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	98.66
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	98.66
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	98.66
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	98.65
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	98.65
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	98.65
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.65
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	98.65
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	98.65
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	98.65
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	98.65
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	98.65
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	98.64
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	98.64
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	98.64
KOG0731|consensus	774		98.64
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	98.64
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	98.64
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	98.64
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.64
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	98.64
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	98.64
COG4598	256	HisP ABC-type histidine transport system, ATPase c	98.63
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	98.63
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	98.63
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	98.63
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	98.63
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	98.63
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.62
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	98.62
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	98.62
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	98.62
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	98.61
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	98.61
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	98.61
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	98.61
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	98.61
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	98.6
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	98.6
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	98.6
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	98.6
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	98.59
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	98.59
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	98.59
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	98.59
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	98.59
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	98.59
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.59
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.58
PLN03211	659	ABC transporter G-25; Provisional	98.58
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	98.58
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	98.58
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	98.57
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.57
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	98.57
cd03246	173	ABCC_Protease_Secretion This family represents the	98.57
COG4525	259	TauB ABC-type taurine transport system, ATPase com	98.57
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	98.57
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	98.57
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	98.57
CHL00176	638	ftsH cell division protein; Validated	98.57
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	98.56
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	98.56
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	98.56
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	98.56
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.56
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	98.56
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	98.56
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	98.56
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	98.55
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	98.55
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	98.55
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	98.55
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	98.54
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	98.54
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	98.54
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	98.54
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	98.54
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	98.54
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	98.54
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.54
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	98.54
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.53
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	98.53
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.52
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.52
COG4172	534	ABC-type uncharacterized transport system, duplica	98.52
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	98.52
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	98.51
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.5
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.5
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.5
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.5
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	98.5
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	98.5
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	98.49
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	98.49
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	98.48
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	98.47
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	98.47
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	98.46
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	98.45
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.45
KOG0057|consensus	591		98.45
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	98.45
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	98.45
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	98.45
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	98.44
PF00005	137	ABC_tran: ABC transporter This structure is on hol	98.44
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.44
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	98.44
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.44
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.43
PRK10938	490	putative molybdenum transport ATP-binding protein	98.43
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.43
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.42
PRK13409	590	putative ATPase RIL; Provisional	98.41
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.41
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	98.41
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	98.4
COG4988	559	CydD ABC-type transport system involved in cytochr	98.4
PLN03130	1622	ABC transporter C family member; Provisional	98.4
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	98.4
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	98.39
COG4586	325	ABC-type uncharacterized transport system, ATPase	98.39
PRK10535	648	macrolide transporter ATP-binding /permease protei	98.39
KOG0055|consensus	1228		98.38
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	98.38
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.38
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	98.38
PRK13546	264	teichoic acids export protein ATP-binding subunit;	98.38
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	98.38
PLN03140	1470	ABC transporter G family member; Provisional	98.38
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.38
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	98.37
PRK10522	547	multidrug transporter membrane component/ATP-bindi	98.37
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	98.37
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.37
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	98.37
COG0488	530	Uup ATPase components of ABC transporters with dup	98.36
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	98.36
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	98.36
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	98.35
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.35
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	98.35
PLN03232	1495	ABC transporter C family member; Provisional	98.35
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.34
PLN03073	718	ABC transporter F family; Provisional	98.34
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.34
PRK13409	590	putative ATPase RIL; Provisional	98.34
COG4178	604	ABC-type uncharacterized transport system, permeas	98.34
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.34
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	98.34
COG0488	530	Uup ATPase components of ABC transporters with dup	98.33
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.33
PRK11147	635	ABC transporter ATPase component; Reviewed	98.32
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	98.32
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	98.32
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.31
PTZ00243	1560	ABC transporter; Provisional	98.31
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	98.3
PRK11147	635	ABC transporter ATPase component; Reviewed	98.3
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.3
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	98.3
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	98.28
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.27
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	98.27
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	98.27
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.27
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.26
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.26
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	98.25
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.24
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.24
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	98.22
COG4133	209	CcmA ABC-type transport system involved in cytochr	98.22
KOG0055|consensus	1228		98.21
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	98.21
KOG0056|consensus	790		98.21
CHL00181	287	cbbX CbbX; Provisional	98.2
KOG0060|consensus	659		98.2
KOG0058|consensus	716		98.19
PLN03073	718	ABC transporter F family; Provisional	98.19
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	98.17
CHL00181	287	cbbX CbbX; Provisional	98.17
COG4136	213	ABC-type uncharacterized transport system, ATPase	98.17
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	98.14
KOG0927|consensus	614		98.13
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.12
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	98.1
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	98.1
KOG0061|consensus	613		98.09
COG2256	436	MGS1 ATPase related to the helicase subunit of the	98.07
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	98.06
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.04
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	98.0
KOG0743|consensus	457		97.98
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.98
KOG0064|consensus	728		97.97
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	97.96
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	97.95
KOG0059|consensus	885		97.94
KOG0989|consensus	346		97.94
COG4674	249	Uncharacterized ABC-type transport system, ATPase	97.94
PRK00411	394	cdc6 cell division control protein 6; Reviewed	97.93
COG4152	300	ABC-type uncharacterized transport system, ATPase	97.91
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.9
PF09336	62	Vps4_C: Vps4 C terminal oligomerisation domain; In	97.9
smart00382	148	AAA ATPases associated with a variety of cellular	97.88
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	97.86
PRK08118	167	topology modulation protein; Reviewed	97.83
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	97.79
PLN03130	1622	ABC transporter C family member; Provisional	97.79
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	97.78
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.78
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.74
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	97.74
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	97.72
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	97.72
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	97.71
PRK00131	175	aroK shikimate kinase; Reviewed	97.7
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	97.69
PRK07261	171	topology modulation protein; Provisional	97.66
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	97.66
KOG0062|consensus	582		97.65
COG3845	501	ABC-type uncharacterized transport systems, ATPase	97.63
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	97.62
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	97.62
PRK14086	617	dnaA chromosomal replication initiation protein; P	97.62
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.62
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.6
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	97.6
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	97.57
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	97.57
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	97.55
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	97.55
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.54
PLN03232	1495	ABC transporter C family member; Provisional	97.54
PRK06762	166	hypothetical protein; Provisional	97.52
PRK04195	482	replication factor C large subunit; Provisional	97.52
PRK13949	169	shikimate kinase; Provisional	97.52
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	97.51
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	97.49
PRK07940	394	DNA polymerase III subunit delta'; Validated	97.49
KOG0927|consensus	614		97.48
PRK03839	180	putative kinase; Provisional	97.48
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	97.47
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.47
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	97.46
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	97.45
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	97.45
PRK06217	183	hypothetical protein; Validated	97.45
PRK09825	176	idnK D-gluconate kinase; Provisional	97.45
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	97.44
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.43
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.43
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	97.43
PF13173	128	AAA_14: AAA domain	97.41

>KOG0733|consensus

Probab=100.00  E-value=4.1e-47  Score=360.47  Aligned_cols=265  Identities=29%  Similarity=0.419  Sum_probs=209.8

Q ss_pred             CcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-------
Q psy13773          7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-------   79 (299)
Q Consensus         7 l~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-------   79 (299)
                      +++|+.|.++++.|+++||||||||||||+|+++||++++.+++.|...++++.+.|+++++++++|+.|...       
T Consensus       209 i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFi  288 (802)
T KOG0733|consen  209 IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFI  288 (802)
T ss_pred             hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEe
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999865       


Q ss_pred             ----HHhhhhcCCCchhhh----HHHhhc---------------------CccchhhcCC-----------CccHHHHHh
Q psy13773         80 ----NFRYAMGKSSPSALR----ETIVEV---------------------PNITWEDIGG-----------LEGVKRELQ  119 (299)
Q Consensus        80 ----~~~~~~~~~~~~~~~----~~l~~l---------------------~~~l~~~~~r-----------~p~~~~R~~  119 (299)
                          ++.+.|........+    ++++.|                     |+.++++++|           .|++.+|.+
T Consensus       289 DeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~  368 (802)
T KOG0733|consen  289 DEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREE  368 (802)
T ss_pred             ecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHH
Confidence                445555443333333    333322                     8888888866           688888876


Q ss_pred             ---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--------------H--hcCCc
Q psy13773        120 ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIR-RERE--------------K--LAGNP  173 (299)
Q Consensus       120 ---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~-~~~~--------------~--~~~~~  173 (299)
                               .+..++++..||+.|+||+|+||++||.+|+..|++|..+...+ ....              +  +....
T Consensus       369 IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~  448 (802)
T KOG0733|consen  369 ILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITS  448 (802)
T ss_pred             HHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCC
Confidence                     34568899999999999999999999999999999998753221 0000              0  00000


Q ss_pred             cccccccc-----------CC----CCCCcccccHHHHHHHHHhccCC-----------CCHHHHHHHHHHHHHHHHhhc
Q psy13773        174 AASAAMET-----------ED----EDDPVPEITRAHFEEAMRFARRS-----------VNDADIRKYEMFAQTLQQSRG  227 (299)
Q Consensus       174 ~~~~~~~~-----------~~----~~~~~~~it~~Df~~AL~~~~Ps-----------Vsw~DIggL~~vk~~i~~ti~  227 (299)
                      +.+..++.           .+    +......|+.+||++|+..+||+           |+|+|||+|++++.+|...|.
T Consensus       449 ~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~  528 (802)
T KOG0733|consen  449 NAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAIL  528 (802)
T ss_pred             cccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHh
Confidence            11100111           01    22233468999999999999976           999999999999999999999


Q ss_pred             CCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeeeccCCCCCCCCCCCCCCCCCCCCCCC
Q psy13773        228 FGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLMFPSNPNQSQSGGPNSAPANESGTGG  287 (299)
Q Consensus       228 ~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (299)
                      |  |.||||+|.. |+.--+|||||||||.|||||-              -|-|||+|..=
T Consensus       529 ~--PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlA--------------KAVANEag~NF  573 (802)
T KOG0733|consen  529 A--PIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLA--------------KAVANEAGANF  573 (802)
T ss_pred             h--hccCHHHHHHhCCCCCCceEEeCCCCccHHHHH--------------HHHhhhccCce
Confidence            9  9999999864 7888999999999999999985              36677777543

>KOG0736|consensus

Probab=100.00  E-value=2.7e-44  Score=348.44  Aligned_cols=232  Identities=21%  Similarity=0.221  Sum_probs=172.2

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-----------HHhhhhcC
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-----------NFRYAMGK   87 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-----------~~~~~~~~   87 (299)
                      .....+||+|++||||||+++++|.+++.++++++|.++++...+.++..+..+|.+++.+           .+......
T Consensus       429 ~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg  508 (953)
T KOG0736|consen  429 TLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG  508 (953)
T ss_pred             ccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC
Confidence            3456899999999999999999999999999999999999988888999999999999876           11111111


Q ss_pred             CCchhhh---H-HHh-hc----------------Cccchhhc---------CCCccHHHHHh---------hhcccCCHH
Q psy13773         88 SSPSALR---E-TIV-EV----------------PNITWEDI---------GGLEGVKRELQ---------ELVQDVDLN  128 (299)
Q Consensus        88 ~~~~~~~---~-~l~-~l----------------~~~l~~~~---------~r~p~~~~R~~---------~l~~~v~l~  128 (299)
                      .......   + .+. +.                ...+.+.+         ...+++++|.+         .+.+++.++
T Consensus       509 ged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k  588 (953)
T KOG0736|consen  509 GEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLK  588 (953)
T ss_pred             chhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHH
Confidence            1111111   1 111 11                01111111         11577888876         345677788


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc----
Q psy13773        129 YIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR----  204 (299)
Q Consensus       129 ~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~----  204 (299)
                      .+|.+|.|||.+|+.+++..+...+..+..++..-.. .+.+.         ....-.....++.+||.+|+.++|    
T Consensus       589 ~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~-~~~~~---------~~~~~~~~~~l~~edf~kals~~~~~fs  658 (953)
T KOG0736|consen  589 QLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGG-LQEED---------EGELCAAGFLLTEEDFDKALSRLQKEFS  658 (953)
T ss_pred             HHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhccccc-chhcc---------ccccccccceecHHHHHHHHHHHHHhhh
Confidence            9999999999999999999986666666544321000 00000         111122336799999999999887    


Q ss_pred             --------CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        205 --------RSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       205 --------PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                              |+|+|+|||||+++|++|+|||++  ||||||||++|++||||||||||||||||||-
T Consensus       659 ~aiGAPKIPnV~WdDVGGLeevK~eIldTIql--PL~hpeLfssglrkRSGILLYGPPGTGKTLlA  722 (953)
T KOG0736|consen  659 DAIGAPKIPNVSWDDVGGLEEVKTEILDTIQL--PLKHPELFSSGLRKRSGILLYGPPGTGKTLLA  722 (953)
T ss_pred             hhcCCCCCCccchhcccCHHHHHHHHHHHhcC--cccChhhhhccccccceeEEECCCCCchHHHH
Confidence                    789999999999999999999999  99999999999999999999999999999973

>KOG0730|consensus

Probab=100.00  E-value=4.8e-40  Score=315.83  Aligned_cols=225  Identities=32%  Similarity=0.500  Sum_probs=188.8

Q ss_pred             eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773          2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--   79 (299)
Q Consensus         2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--   79 (299)
                      +|.+|+.+|.+|.+++++++.++|+|||||+|||.+++++|++.+..++.+++.++++++.|+++.++|..|+.+...  
T Consensus       199 ~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~  278 (693)
T KOG0730|consen  199 LVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQV  278 (693)
T ss_pred             HHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCC
Confidence            578999999999999999999999999999999999999999999999999999999999999999999999988754  


Q ss_pred             ----------HHhhhhcCCCchhhh---HHHh---hc--------------CccchhhcC--C--------CccHHHHHh
Q psy13773         80 ----------NFRYAMGKSSPSALR---ETIV---EV--------------PNITWEDIG--G--------LEGVKRELQ  119 (299)
Q Consensus        80 ----------~~~~~~~~~~~~~~~---~~l~---~l--------------~~~l~~~~~--r--------~p~~~~R~~  119 (299)
                                ++++.+........+   +++.   .+              ++.++++++  |        .|+..+|.+
T Consensus       279 psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~Rld  358 (693)
T KOG0730|consen  279 PSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLD  358 (693)
T ss_pred             CeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHH
Confidence                      455555444331111   1111   11              677777776  3        677777776


Q ss_pred             ---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCccc
Q psy13773        120 ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPE  190 (299)
Q Consensus       120 ---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (299)
                               ....++++..+|..|+||+|+|+..+|.+|++.++++.                                 
T Consensus       359 Il~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~~---------------------------------  405 (693)
T KOG0730|consen  359 ILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRRT---------------------------------  405 (693)
T ss_pred             HHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhhh---------------------------------
Confidence                     33457889999999999999999999999999998872                                 


Q ss_pred             ccHHHHHHHHHhccC-----------CCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCC
Q psy13773        191 ITRAHFEEAMRFARR-----------SVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGG  258 (299)
Q Consensus       191 it~~Df~~AL~~~~P-----------sVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~  258 (299)
                        .++|..|+..++|           +|+|+|||||+++|++++++|+|  |++|||-|.. |+.--.|||||||||+||
T Consensus       406 --~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~--p~~~pe~F~r~Gi~ppkGVLlyGPPGC~K  481 (693)
T KOG0730|consen  406 --LEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEW--PLKHPEKFARFGISPPKGVLLYGPPGCGK  481 (693)
T ss_pred             --HHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhh--hhhchHHHHHhcCCCCceEEEECCCCcch
Confidence              4577777777765           49999999999999999999999  9999998876 346667999999999999


Q ss_pred             eeeec
Q psy13773        259 ILLMF  263 (299)
Q Consensus       259 ~ll~~  263 (299)
                      ||+-.
T Consensus       482 T~lAk  486 (693)
T KOG0730|consen  482 TLLAK  486 (693)
T ss_pred             HHHHH
Confidence            99865

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=100.00  E-value=7e-34  Score=289.11  Aligned_cols=248  Identities=31%  Similarity=0.498  Sum_probs=188.5

Q ss_pred             eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773          2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--   79 (299)
Q Consensus         2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--   79 (299)
                      .|.+|+.+|++|..+++.++++++|+||||||||+++++||++++..++.+++.++.+.+.++.+..++.+|+.+...  
T Consensus       193 ~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p  272 (733)
T TIGR01243       193 MVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAP  272 (733)
T ss_pred             HHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence            356899999999999999999999999999999999999999999999999999999999999999999999987643  


Q ss_pred             ---------HHhhhhcCCCchh----hhHHHhhc-----------------CccchhhcCC-----------CccHHHHH
Q psy13773         80 ---------NFRYAMGKSSPSA----LRETIVEV-----------------PNITWEDIGG-----------LEGVKREL  118 (299)
Q Consensus        80 ---------~~~~~~~~~~~~~----~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~  118 (299)
                               .+...+.......    ...++..+                 ++.+++++.+           .|+..+|.
T Consensus       273 ~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~  352 (733)
T TIGR01243       273 SIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARK  352 (733)
T ss_pred             cEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHH
Confidence                     2222222111111    11111111                 3444444422           57777766


Q ss_pred             h---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcc
Q psy13773        119 Q---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVP  189 (299)
Q Consensus       119 ~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (299)
                      .         .+..++++..++..|+||+++|+..+|+.|++.+++|........        .. ...+  ........
T Consensus       353 ~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~--------~~-~~~i--~~~~~~~~  421 (733)
T TIGR01243       353 EILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKIN--------FE-AEEI--PAEVLKEL  421 (733)
T ss_pred             HHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccc--------cc-cccc--cchhcccc
Confidence            5         233577889999999999999999999999999999876321000        00 0000  00011223


Q ss_pred             cccHHHHHHHHHhccCC-----------CCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCC
Q psy13773        190 EITRAHFEEAMRFARRS-----------VNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTG  257 (299)
Q Consensus       190 ~it~~Df~~AL~~~~Ps-----------Vsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg  257 (299)
                      .++.+||..|++.++|+           |+|+||||++++|+.+.+.++|  |++||++|.. +++...|+|||||||||
T Consensus       422 ~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~--~~~~~~~~~~~g~~~~~giLL~GppGtG  499 (733)
T TIGR01243       422 KVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEW--PLKHPEIFEKMGIRPPKGVLLFGPPGTG  499 (733)
T ss_pred             cccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHHHHHHHHh--hhhCHHHHHhcCCCCCceEEEECCCCCC
Confidence            58999999999988865           8999999999999999999999  9999999976 67778899999999999


Q ss_pred             Ceeee
Q psy13773        258 GILLM  262 (299)
Q Consensus       258 ~~ll~  262 (299)
                      ||+|.
T Consensus       500 KT~la  504 (733)
T TIGR01243       500 KTLLA  504 (733)
T ss_pred             HHHHH
Confidence            99873

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>KOG0730|consensus

Probab=100.00  E-value=2.1e-32  Score=263.19  Aligned_cols=192  Identities=45%  Similarity=0.781  Sum_probs=168.5

Q ss_pred             eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773          2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--   79 (299)
Q Consensus         2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--   79 (299)
                      .|.||+++|+.|..|++.++++||||||||||||+++|++|.+.+.+|+.|.|.++.++|+|++|++++++|++|+..  
T Consensus       449 ~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP  528 (693)
T KOG0730|consen  449 AVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAP  528 (693)
T ss_pred             HHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCC
Confidence            589999999999999999999999999999999999999999999999999999999999999999999999999864  


Q ss_pred             ---------HHhhhhcCCCchhhh----HHHhhc-----------------CccchhhcCC-----------CccHHHHH
Q psy13773         80 ---------NFRYAMGKSSPSALR----ETIVEV-----------------PNITWEDIGG-----------LEGVKREL  118 (299)
Q Consensus        80 ---------~~~~~~~~~~~~~~~----~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~  118 (299)
                               +++..|+........    ++|++|                 |+.+|+++.|           +|+.+.|.
T Consensus       529 ~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~  608 (693)
T KOG0730|consen  529 CIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARL  608 (693)
T ss_pred             eEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHH
Confidence                     566666544332222    455555                 7888888855           68888887


Q ss_pred             h---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcc
Q psy13773        119 Q---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVP  189 (299)
Q Consensus       119 ~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (299)
                      +         ++.+++|++.||++|+||||+||..||++|++.|+++.++                            ..
T Consensus       609 ~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~----------------------------a~  660 (693)
T KOG0730|consen  609 EILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE----------------------------AT  660 (693)
T ss_pred             HHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc----------------------------cc
Confidence            6         5668899999999999999999999999999999998763                            24


Q ss_pred             cccHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q psy13773        190 EITRAHFEEAMRFARRSVNDADIRKYEMFAQT  221 (299)
Q Consensus       190 ~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~  221 (299)
                      .|+.+||++|++..+|+++.+++..|+++++.
T Consensus       661 ~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~  692 (693)
T KOG0730|consen  661 EITWQHFEEALKAVRPSLTSELLEKYEDFAAR  692 (693)
T ss_pred             cccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence            68899999999999999999999999999864

>KOG0738|consensus

Probab=100.00  E-value=4.3e-32  Score=247.22  Aligned_cols=209  Identities=37%  Similarity=0.561  Sum_probs=172.2

Q ss_pred             CeeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-
Q psy13773          1 MISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-   79 (299)
Q Consensus         1 ~~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-   79 (299)
                      ++|++|+..|+.|..+. .|+++||++||||+|||+|+|++|.+++..|+.|+.+.+.++|-|++++.+|-+|+.|+.+ 
T Consensus       226 EAVvlPi~mPe~F~Gir-rPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyA  304 (491)
T KOG0738|consen  226 EAVVLPIWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYA  304 (491)
T ss_pred             HHHhhhhhhHHHHhhcc-cccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhC
Confidence            46899999999998754 7899999999999999999999999999999999999999999999999999999999876 


Q ss_pred             ----------HHhhhhcCCC-chhhh----HHHhhc---------------------CccchhhcCC---------CccH
Q psy13773         80 ----------NFRYAMGKSS-PSALR----ETIVEV---------------------PNITWEDIGG---------LEGV  114 (299)
Q Consensus        80 ----------~~~~~~~~~~-~~~~~----~~l~~l---------------------~~~l~~~~~r---------~p~~  114 (299)
                                .+|.+|.... .+..+    ++|.+|                     ||.+|++++|         +|+.
T Consensus       305 PStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~  384 (491)
T KOG0738|consen  305 PSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDA  384 (491)
T ss_pred             CceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCH
Confidence                      6777776553 23333    333332                     9999999855         7888


Q ss_pred             HHHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCC
Q psy13773        115 KRELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDED  185 (299)
Q Consensus       115 ~~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (299)
                      +.|..         ...++++++.||.+++||||+||..+|++|+++++||.+......+..          .+ . .++
T Consensus       385 ~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~----------~l-a-kE~  452 (491)
T KOG0738|consen  385 EARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIR----------QL-A-KEE  452 (491)
T ss_pred             HHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhh----------hh-h-hhc
Confidence            88865         567889999999999999999999999999999999987431111100          01 1 111


Q ss_pred             CCcccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Q psy13773        186 DPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQ  223 (299)
Q Consensus       186 ~~~~~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~  223 (299)
                      .. .+++.+||++|+++++|+|+-+|+..++.|-++|.
T Consensus       453 ~~-~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efG  489 (491)
T KOG0738|consen  453 PK-MPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFG  489 (491)
T ss_pred             cc-cccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhc
Confidence            12 57999999999999999999999999999999874

>KOG0733|consensus

Probab=99.98  E-value=8.6e-32  Score=256.36  Aligned_cols=207  Identities=40%  Similarity=0.615  Sum_probs=174.6

Q ss_pred             CeeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-
Q psy13773          1 MISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-   79 (299)
Q Consensus         1 ~~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-   79 (299)
                      |.|++|.++|++|..+++..+.+|||+||||||||.|+|++|++.+.+|+.|.+.+|.++|+|++++++|.+|++|+.. 
T Consensus       525 ~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~sa  604 (802)
T KOG0733|consen  525 MAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASA  604 (802)
T ss_pred             HHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCC
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999999999876 


Q ss_pred             ----------HHhhhhcCCCchhhh----HHHhhc-----------------CccchhhcCC-----------CccHHHH
Q psy13773         80 ----------NFRYAMGKSSPSALR----ETIVEV-----------------PNITWEDIGG-----------LEGVKRE  117 (299)
Q Consensus        80 ----------~~~~~~~~~~~~~~~----~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R  117 (299)
                                ++++.|+........    ++|+++                 |+.+|++++|           +|+..+|
T Consensus       605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR  684 (802)
T KOG0733|consen  605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER  684 (802)
T ss_pred             CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence                      566666665443222    566665                 8999999866           6888888


Q ss_pred             Hh-----------hhcccCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCC
Q psy13773        118 LQ-----------ELVQDVDLNYIAKVTN--GFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDE  184 (299)
Q Consensus       118 ~~-----------~l~~~v~l~~LA~~t~--glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (299)
                      .+           ++..+|||+.||..+.  ||||+||..||++|++.|+++.+....                  ....
T Consensus       685 ~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~------------------~~~~  746 (802)
T KOG0733|consen  685 VAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEID------------------SSED  746 (802)
T ss_pred             HHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhcc------------------ccCc
Confidence            86           5678999999998886  999999999999999999998864110                  1111


Q ss_pred             CCC----cccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q psy13773        185 DDP----VPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQS  225 (299)
Q Consensus       185 ~~~----~~~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~t  225 (299)
                      +..    ...+|..||++|+++++|||+..|-..|+..++...-+
T Consensus       747 ~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~L~  791 (802)
T KOG0733|consen  747 DVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRSLS  791 (802)
T ss_pred             ccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhccc
Confidence            111    23588999999999999999999999998888776544

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.4e-31  Score=242.27  Aligned_cols=174  Identities=39%  Similarity=0.618  Sum_probs=151.4

Q ss_pred             CeeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-
Q psy13773          1 MISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-   79 (299)
Q Consensus         1 ~~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-   79 (299)
                      ++|.+||++|++|..++|.||++||||||||||||+|+|++|++..+.|+.+.+++++.+|+|+..+.+|++|..|+.. 
T Consensus       165 E~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lAreka  244 (406)
T COG1222         165 EVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKA  244 (406)
T ss_pred             HHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcC
Confidence            4689999999999999999999999999999999999999999999999999999999999999999999999999865 


Q ss_pred             ----------HHhhhhcCCCchhhh-------HHHhhc-----------------CccchhhcCC-----------CccH
Q psy13773         80 ----------NFRYAMGKSSPSALR-------ETIVEV-----------------PNITWEDIGG-----------LEGV  114 (299)
Q Consensus        80 ----------~~~~~~~~~~~~~~~-------~~l~~l-----------------~~~l~~~~~r-----------~p~~  114 (299)
                                ++...|.....+..+       ++|.++                 ++.+|+++.|           +|+.
T Consensus       245 PsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~  324 (406)
T COG1222         245 PSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDE  324 (406)
T ss_pred             CeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCH
Confidence                      555555554333322       444444                 7888998865           6888


Q ss_pred             HHHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCC
Q psy13773        115 KRELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDED  185 (299)
Q Consensus       115 ~~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (299)
                      ..|.+         .+.+++||+.||+.|+|+||+|++++|.+|.+.|+|+..                           
T Consensus       325 ~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R---------------------------  377 (406)
T COG1222         325 EGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERR---------------------------  377 (406)
T ss_pred             HHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc---------------------------
Confidence            77765         567899999999999999999999999999999999764                           


Q ss_pred             CCcccccHHHHHHHHHhcc
Q psy13773        186 DPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       186 ~~~~~it~~Df~~AL~~~~  204 (299)
                         ..||++||.+|..++.
T Consensus       378 ---~~Vt~~DF~~Av~KV~  393 (406)
T COG1222         378 ---DEVTMEDFLKAVEKVV  393 (406)
T ss_pred             ---CeecHHHHHHHHHHHH
Confidence               3699999999998874

>KOG0735|consensus

Probab=99.97  E-value=6.7e-31  Score=253.63  Aligned_cols=217  Identities=19%  Similarity=0.195  Sum_probs=157.8

Q ss_pred             CCCCcEEEEEcCCCChHHHHHHHHHHhhc----CCeecccchhhhhccccccHHHHHHHHHHHHHH-----------HHh
Q psy13773         18 MQPSRGVLFYGPPGCGKTLLAKAIANECQ----ANFISVKGPELLTMWFGESEANVRDIFDKVTME-----------NFR   82 (299)
Q Consensus        18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~----~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-----------~~~   82 (299)
                      +.....++|.||+|||||.|+++++.+..    .++..++|+.+.........+.++.+|..+..+           .+.
T Consensus       428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~  507 (952)
T KOG0735|consen  428 VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLA  507 (952)
T ss_pred             ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhh
Confidence            45567899999999999999999999775    355678999987665555666677778776655           222


Q ss_pred             hhhcC-CCch-----hhhHHHhhc------------------------Cccchhhc------CCCccHHHHHhhhc----
Q psy13773         83 YAMGK-SSPS-----ALRETIVEV------------------------PNITWEDI------GGLEGVKRELQELV----  122 (299)
Q Consensus        83 ~~~~~-~~~~-----~~~~~l~~l------------------------~~~l~~~~------~r~p~~~~R~~~l~----  122 (299)
                      ....+ +...     ....++.++                        +....+-+      .+.|+..+|.+.+.    
T Consensus       508 ~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s  587 (952)
T KOG0735|consen  508 SASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFS  587 (952)
T ss_pred             ccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHH
Confidence            21111 1110     011122111                        11111101      22577777766211    


Q ss_pred             ------ccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHH
Q psy13773        123 ------QDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHF  196 (299)
Q Consensus       123 ------~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df  196 (299)
                            ..-|++.++..|+||+..|+..++.+|.+.|+...++.                         . ...+|.++|
T Consensus       588 ~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~-------------------------~-~klltke~f  641 (952)
T KOG0735|consen  588 KNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISN-------------------------G-PKLLTKELF  641 (952)
T ss_pred             hhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcc-------------------------C-cccchHHHH
Confidence                  11145669999999999999999999999998544321                         1 126899999


Q ss_pred             HHHHHhccCC------------CCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC-CCCCCCCcccccCCCCCCCeeee
Q psy13773        197 EEAMRFARRS------------VNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPN-QSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       197 ~~AL~~~~Ps------------Vsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~-~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .+||+.+.|.            +.|+|||||.++|+.++|+|+|  |.|||.+|+ .+++-|+|||||||||||||||-
T Consensus       642 ~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~--P~kyp~if~~~plr~~~giLLyGppGcGKT~la  718 (952)
T KOG0735|consen  642 EKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEW--PSKYPQIFANCPLRLRTGILLYGPPGCGKTLLA  718 (952)
T ss_pred             HHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHHhc--cccchHHHhhCCcccccceEEECCCCCcHHHHH
Confidence            9999999873            8999999999999999999999  999999996 58999999999999999999985

>KOG0739|consensus

Probab=99.96  E-value=8.6e-30  Score=225.47  Aligned_cols=223  Identities=27%  Similarity=0.493  Sum_probs=177.4

Q ss_pred             CeeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-
Q psy13773          1 MISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-   79 (299)
Q Consensus         1 ~~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-   79 (299)
                      ++||+|+++|++|.. .-.|.++||||||||+|||.|++++|-+.++.|+.|+.++|+++|+|++++.++++|+.|+.. 
T Consensus       147 EAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~k  225 (439)
T KOG0739|consen  147 EAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENK  225 (439)
T ss_pred             hheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcC
Confidence            479999999999976 457899999999999999999999999999999999999999999999999999999999865 


Q ss_pred             ----------HHhhhhcCCCchhhh----HHHhhc------------------CccchhhcCC---------CccHHHHH
Q psy13773         80 ----------NFRYAMGKSSPSALR----ETIVEV------------------PNITWEDIGG---------LEGVKREL  118 (299)
Q Consensus        80 ----------~~~~~~~~~~~~~~~----~~l~~l------------------~~~l~~~~~r---------~p~~~~R~  118 (299)
                                .+|..+.++.+...+    ++|++|                  ||.+|.+++|         +|+...|.
T Consensus       226 PSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~  305 (439)
T KOG0739|consen  226 PSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARA  305 (439)
T ss_pred             CcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhh
Confidence                      677777777776665    344433                  8999988855         68888887


Q ss_pred             h----------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHh----c----CCcc
Q psy13773        119 Q----------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRE------REKL----A----GNPA  174 (299)
Q Consensus       119 ~----------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~------~~~~----~----~~~~  174 (299)
                      .          ..+..-|+.+|+.+|+||||+|+.-+|++|.+..+|+......-..      ...+    .    +.++
T Consensus       306 ~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~g  385 (439)
T KOG0739|consen  306 RMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPG  385 (439)
T ss_pred             hhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcc
Confidence            5          4456678999999999999999999999999999998865432111      0000    0    1122


Q ss_pred             ccc--ccccCCCCCCcccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Q psy13773        175 ASA--AMETEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQ  224 (299)
Q Consensus       175 ~~~--~~~~~~~~~~~~~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~  224 (299)
                      .+.  |+....+..-.++||+.||.++|.+.+|+|..+|+-.++.|.+.|.+
T Consensus       386 a~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFGq  437 (439)
T KOG0739|consen  386 AIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFGQ  437 (439)
T ss_pred             hhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhcc
Confidence            221  22222233345789999999999999999999999999999888754

>KOG0736|consensus

Probab=99.95  E-value=8.8e-28  Score=233.93  Aligned_cols=207  Identities=36%  Similarity=0.605  Sum_probs=166.0

Q ss_pred             eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773          2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--   79 (299)
Q Consensus         2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--   79 (299)
                      .|-+||+||++|.+ ++.+..+||||||||||||.++|++|-++...|+.|.|.+|.++|+|++|.++|++|++|+..  
T Consensus       687 TIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~P  765 (953)
T KOG0736|consen  687 TIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAP  765 (953)
T ss_pred             HhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCC
Confidence            36789999999965 888899999999999999999999999999999999999999999999999999999999865  


Q ss_pred             ---------HHhhhhcCCCch---hhh---HHHhhc-------------------CccchhhcCC-----------C-cc
Q psy13773         80 ---------NFRYAMGKSSPS---ALR---ETIVEV-------------------PNITWEDIGG-----------L-EG  113 (299)
Q Consensus        80 ---------~~~~~~~~~~~~---~~~---~~l~~l-------------------~~~l~~~~~r-----------~-p~  113 (299)
                               .+.+.|...+++   ..+   +++.++                   |+.+|+++.|           . .+
T Consensus       766 CVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d  845 (953)
T KOG0736|consen  766 CVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNED  845 (953)
T ss_pred             eEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCcc
Confidence                     566666555432   222   455444                   8888998866           1 12


Q ss_pred             HHH---------HHhhhcccCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCC
Q psy13773        114 VKR---------ELQELVQDVDLNYIAKVT-NGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETED  183 (299)
Q Consensus       114 ~~~---------R~~~l~~~v~l~~LA~~t-~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (299)
                      .+.         |...+.++|++.++|+++ ..|||+|+-+||.+|.+.|++|.++.-...             .+...+
T Consensus       846 ~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g-------------~~~~~e  912 (953)
T KOG0736|consen  846 AESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESG-------------TISEEE  912 (953)
T ss_pred             HHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhc-------------cccccc
Confidence            222         222677899999999888 689999999999999999999987532110             011112


Q ss_pred             CCCCcccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Q psy13773        184 EDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTL  222 (299)
Q Consensus       184 ~~~~~~~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i  222 (299)
                      -+.....|+++||.+|+++++|||+-.|+..|+.+|..|
T Consensus       913 ~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~f  951 (953)
T KOG0736|consen  913 QESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQF  951 (953)
T ss_pred             cCCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhh
Confidence            223445799999999999999999999999999999876

>KOG0741|consensus

Probab=99.95  E-value=3.6e-27  Score=221.85  Aligned_cols=236  Identities=28%  Similarity=0.422  Sum_probs=175.9

Q ss_pred             cCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCe-ecccchhhhhccccccHHHHHHHHHHHHHH-----
Q psy13773          6 PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANF-ISVKGPELLTMWFGESEANVRDIFDKVTME-----   79 (299)
Q Consensus         6 pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~-i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-----   79 (299)
                      ..+-|++...|+++..+++|||||||||||.++|.|...+.... -.|++.++.++|+|+++.++|.+|..|...     
T Consensus       241 RvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g  320 (744)
T KOG0741|consen  241 RVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLG  320 (744)
T ss_pred             hcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhC
Confidence            35668899999999999999999999999999999999887543 458999999999999999999999988654     


Q ss_pred             --------------HHhhhhcCCCch------hhhHHHhhc-----------------CccchhhcCC-----------C
Q psy13773         80 --------------NFRYAMGKSSPS------ALRETIVEV-----------------PNITWEDIGG-----------L  111 (299)
Q Consensus        80 --------------~~~~~~~~~~~~------~~~~~l~~l-----------------~~~l~~~~~r-----------~  111 (299)
                                    ++|.+|.+....      ...++|..+                 .+.+|+++.|           +
T Consensus       321 ~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsL  400 (744)
T KOG0741|consen  321 ANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISL  400 (744)
T ss_pred             ccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeC
Confidence                          789888776432      222444433                 6777888866           7


Q ss_pred             ccHHHHHh-------------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Q psy13773        112 EGVKRELQ-------------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAA  178 (299)
Q Consensus       112 p~~~~R~~-------------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~  178 (299)
                      |+++.|+.             .+..+||+++||.+|..|||++|..|++.|...|+.|.+..+.            .   
T Consensus       401 PDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~------------~---  465 (744)
T KOG0741|consen  401 PDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGG------------K---  465 (744)
T ss_pred             CCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCc------------c---
Confidence            88888775             4568999999999999999999999999999999999874320            0   


Q ss_pred             cccCCCCCCcccccHHHHHHHHHhccCC--CCHHHHHHHHHHHHHHHHhhcCCCCC----CCCCCC-----CCCCCCCCc
Q psy13773        179 METEDEDDPVPEITRAHFEEAMRFARRS--VNDADIRKYEMFAQTLQQSRGFGTNF----RFPSNP-----NQSQSGGPN  247 (299)
Q Consensus       179 ~~~~~~~~~~~~it~~Df~~AL~~~~Ps--Vsw~DIggL~~vk~~i~~ti~~~~Pl----k~Pe~~-----~~~~~k~s~  247 (299)
                      ............|+++||..||.+++|.  ++.+|+..+..     .-.|.||.|.    ++-.+|     ++....-..
T Consensus       466 ~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~-----~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvS  540 (744)
T KOG0741|consen  466 VEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVM-----NGMINWGPPVTRILDDGKLLVQQVKNSERSPLVS  540 (744)
T ss_pred             eecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHh-----CCceeecccHHHHHhhHHHHHHHhhccccCcceE
Confidence            0011112233579999999999999998  67776644321     0124443321    111111     122233567


Q ss_pred             ccccCCCCCCCeee
Q psy13773        248 SAPANESGTGGILL  261 (299)
Q Consensus       248 ~l~~g~~gtg~~ll  261 (299)
                      +||.||||+|||-|
T Consensus       541 vLl~Gp~~sGKTaL  554 (744)
T KOG0741|consen  541 VLLEGPPGSGKTAL  554 (744)
T ss_pred             EEEecCCCCChHHH
Confidence            99999999999987

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1e-25  Score=220.16  Aligned_cols=231  Identities=29%  Similarity=0.408  Sum_probs=178.2

Q ss_pred             ccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHHH----
Q psy13773          5 YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMEN----   80 (299)
Q Consensus         5 ~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~----   80 (299)
                      +|+..|+.|..+.+.++.+++++||+|+|||+++++++.. ...+..+++..+.+++.+.++..++.+|..+....    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii   80 (494)
T COG0464           2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII   80 (494)
T ss_pred             CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence            6899999999999999999999999999999999999999 66667789999999999999999999999887652    


Q ss_pred             -------HhhhhcCCCchh----hhHHHh----------------hcCccchhhcCC-----------CccHHHHHh---
Q psy13773         81 -------FRYAMGKSSPSA----LRETIV----------------EVPNITWEDIGG-----------LEGVKRELQ---  119 (299)
Q Consensus        81 -------~~~~~~~~~~~~----~~~~l~----------------~l~~~l~~~~~r-----------~p~~~~R~~---  119 (299)
                             +...+.......    ..+.+.                ..+..++++..+           .++...|.+   
T Consensus        81 ~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~  160 (494)
T COG0464          81 FIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQ  160 (494)
T ss_pred             eechhhhcccCccccccchhhHHHHHHHHhcccccCCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHH
Confidence                   222222200000    001111                112222222221           344444432   


Q ss_pred             ------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccH
Q psy13773        120 ------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITR  193 (299)
Q Consensus       120 ------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~  193 (299)
                            ....+.++..++..+.||+++++..++..+.+.+++|...                        .......++.
T Consensus       161 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~------------------------~~~~~~~~~~  216 (494)
T COG0464         161 IHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAID------------------------LVGEYIGVTE  216 (494)
T ss_pred             HHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhc------------------------cCcccccccH
Confidence                  2233567899999999999999999999999999888630                        0011245889


Q ss_pred             HHHHHHHHhccC---------CCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773        194 AHFEEAMRFARR---------SVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       194 ~Df~~AL~~~~P---------sVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      +||.++++++.|         .|+|+|||||+++|+.+.+.++|  |++||++|.. +++...|+|||||||||||+|-
T Consensus       217 ~~~~~~l~~~~~~~~~~~~~~~v~~~diggl~~~k~~l~e~v~~--~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lA  293 (494)
T COG0464         217 DDFEEALKKVLPSRGVLFEDEDVTLDDIGGLEEAKEELKEAIET--PLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLA  293 (494)
T ss_pred             HHHHHHHHhcCcccccccCCCCcceehhhcHHHHHHHHHHHHHh--HhhChHHHHhcCCCCCCeeEEECCCCCCHHHHH
Confidence            999999999755         49999999999999999999999  9999999988 8899999999999999999974

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.92  E-value=1.5e-24  Score=220.79  Aligned_cols=211  Identities=38%  Similarity=0.653  Sum_probs=164.8

Q ss_pred             eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773          2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--   79 (299)
Q Consensus         2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--   79 (299)
                      .|.+|+.+|++|..+++.++.++|||||||||||++++++|.+++.+++.+++.++.++|+|++++.++.+|..++..  
T Consensus       468 ~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p  547 (733)
T TIGR01243       468 AVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAP  547 (733)
T ss_pred             HHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCC
Confidence            467899999999999999999999999999999999999999999999999999999999999999999999998764  


Q ss_pred             ---------HHhhhhcCCCc-hh----hhHHHhhc-----------------CccchhhcCC-----------CccHHHH
Q psy13773         80 ---------NFRYAMGKSSP-SA----LRETIVEV-----------------PNITWEDIGG-----------LEGVKRE  117 (299)
Q Consensus        80 ---------~~~~~~~~~~~-~~----~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R  117 (299)
                               .+...+..... ..    ..+++.++                 ++.+++++.|           .|+..+|
T Consensus       548 ~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R  627 (733)
T TIGR01243       548 AIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEAR  627 (733)
T ss_pred             EEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHH
Confidence                     33333332211 11    11233222                 6777777753           6888888


Q ss_pred             Hh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCc
Q psy13773        118 LQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPV  188 (299)
Q Consensus       118 ~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (299)
                      .+         .+..+++++.||..|+||||+|++.+|++|++.|+++.........   ...         ........
T Consensus       628 ~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~---~~~---------~~~~~~~~  695 (733)
T TIGR01243       628 KEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEK---LEV---------GEEEFLKD  695 (733)
T ss_pred             HHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchh---hhc---------cccccccc
Confidence            76         3356789999999999999999999999999999998764211000   000         00001123


Q ss_pred             ccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Q psy13773        189 PEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQ  224 (299)
Q Consensus       189 ~~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~  224 (299)
                      ..|+.+||.+|+++++|+|+.+++..|++|++.+..
T Consensus       696 ~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~~~~~  731 (733)
T TIGR01243       696 LKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELKR  731 (733)
T ss_pred             CcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence            479999999999999999999999999999998853

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>KOG0737|consensus

Probab=99.92  E-value=1e-24  Score=198.58  Aligned_cols=209  Identities=33%  Similarity=0.488  Sum_probs=154.8

Q ss_pred             CeeeccCcChhhhhcCC-CCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH
Q psy13773          1 MISTYPVEHPEKFLKFG-MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME   79 (299)
Q Consensus         1 ~~v~~pl~~p~~~~sl~-i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~   79 (299)
                      ++|++|+.+|++|.... ..++++||||||||||||++++++|.+.+..++.|+.+.+.++|+|+.++.++.+|..|...
T Consensus       106 e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl  185 (386)
T KOG0737|consen  106 ELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLASKL  185 (386)
T ss_pred             HHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHHhhhhhc
Confidence            36899999999996544 46889999999999999999999999999999999999999999999999999999987643


Q ss_pred             -----------HHhhhhcCCCchhhhHHHhhc-----------------------CccchhhcCC---------CccHHH
Q psy13773         80 -----------NFRYAMGKSSPSALRETIVEV-----------------------PNITWEDIGG---------LEGVKR  116 (299)
Q Consensus        80 -----------~~~~~~~~~~~~~~~~~l~~l-----------------------~~~l~~~~~r---------~p~~~~  116 (299)
                                 .+...|...+.+.....-.++                       |..+|.++.|         +|+..+
T Consensus       186 ~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~q  265 (386)
T KOG0737|consen  186 QPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQ  265 (386)
T ss_pred             CcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhh
Confidence                       444445433333333222221                       6777777633         688888


Q ss_pred             HHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhc-CCcccccccccCCC
Q psy13773        117 ELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETE--IRREREKLA-GNPAASAAMETEDE  184 (299)
Q Consensus       117 R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~  184 (299)
                      |..         .+.+++|+..+|..|+||||.||+.+|+.|++..+|..+...  ......... ..+...     -..
T Consensus       266 R~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~-----~~~  340 (386)
T KOG0737|consen  266 RRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGLLDLDKAIADLKPTQA-----AAS  340 (386)
T ss_pred             HHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccchhhhhhhhhccCCcc-----ccc
Confidence            876         456899999999999999999999999999999999998653  000000000 000000     011


Q ss_pred             CCCcccccHHHHHHHHHhccCCCCHHHHHH
Q psy13773        185 DDPVPEITRAHFEEAMRFARRSVNDADIRK  214 (299)
Q Consensus       185 ~~~~~~it~~Df~~AL~~~~PsVsw~DIgg  214 (299)
                      .....+++++||.+|++++-++++-+...+
T Consensus       341 ~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~  370 (386)
T KOG0737|consen  341 SCLLRPLEQEDFPKAINRVSASVAMDATRM  370 (386)
T ss_pred             ccccCcccHHHHHHHHHhhhhHHHHhhhhh
Confidence            122578999999999998888765554433

>KOG0728|consensus

Probab=99.90  E-value=1.4e-23  Score=182.36  Aligned_cols=173  Identities=32%  Similarity=0.521  Sum_probs=142.5

Q ss_pred             CeeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-
Q psy13773          1 MISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-   79 (299)
Q Consensus         1 ~~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-   79 (299)
                      ++|.+|.+||++|.+++|..+++++||||||+|||.|++++|......|+.+++++++.+|+|+..+.++++|-.|+.. 
T Consensus       161 EVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmareha  240 (404)
T KOG0728|consen  161 EVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHA  240 (404)
T ss_pred             HHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence            3678999999999999999999999999999999999999999999999999999999999999999999999999876 


Q ss_pred             ----------HHhhhhcCCC---chhhh----HHHhhc-----------------CccchhhcCC-----------CccH
Q psy13773         80 ----------NFRYAMGKSS---PSALR----ETIVEV-----------------PNITWEDIGG-----------LEGV  114 (299)
Q Consensus        80 ----------~~~~~~~~~~---~~~~~----~~l~~l-----------------~~~l~~~~~r-----------~p~~  114 (299)
                                .+...+.+..   ++...    +++.++                 .+.+|+++.|           .|+.
T Consensus       241 psiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e  320 (404)
T KOG0728|consen  241 PSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNE  320 (404)
T ss_pred             CceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCH
Confidence                      3333333221   12222    233322                 5667777754           5677


Q ss_pred             HHHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCC
Q psy13773        115 KRELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDED  185 (299)
Q Consensus       115 ~~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (299)
                      +.|++         .+..-+++..+|.+..|-||++++.+|.+|.+.|+|...                           
T Consensus       321 ~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerr---------------------------  373 (404)
T KOG0728|consen  321 EARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERR---------------------------  373 (404)
T ss_pred             HHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhh---------------------------
Confidence            77765         567788999999999999999999999999999998654                           


Q ss_pred             CCcccccHHHHHHHHHhc
Q psy13773        186 DPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       186 ~~~~~it~~Df~~AL~~~  203 (299)
                         ..+|++||+-|+.++
T Consensus       374 ---vhvtqedfemav~kv  388 (404)
T KOG0728|consen  374 ---VHVTQEDFEMAVAKV  388 (404)
T ss_pred             ---ccccHHHHHHHHHHH
Confidence               369999999998776

>KOG0735|consensus

Probab=99.90  E-value=2e-23  Score=202.12  Aligned_cols=202  Identities=35%  Similarity=0.550  Sum_probs=161.5

Q ss_pred             eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773          2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--   79 (299)
Q Consensus         2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--   79 (299)
                      +|.||-+.|.+|.+..+..+.+||||||||||||.|+.++|...+..+|.|.|.++.++|+|.++.++|.+|.+|+..  
T Consensus       682 ~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~P  761 (952)
T KOG0735|consen  682 VIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKP  761 (952)
T ss_pred             HHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCC
Confidence            578999999999999999999999999999999999999999999999999999999999999999999999999865  


Q ss_pred             ---------HHhhhhcCCCch-hh---hHHHhhc-----------------CccchhhcCC-----------CccHHHHH
Q psy13773         80 ---------NFRYAMGKSSPS-AL---RETIVEV-----------------PNITWEDIGG-----------LEGVKREL  118 (299)
Q Consensus        80 ---------~~~~~~~~~~~~-~~---~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~  118 (299)
                               .+.++|...... ..   .++++++                 |+.+|+++.|           .|+..+|+
T Consensus       762 CiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl  841 (952)
T KOG0735|consen  762 CILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERL  841 (952)
T ss_pred             eEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHH
Confidence                     455555443222 22   2566665                 8889998866           68888888


Q ss_pred             h---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcc
Q psy13773        119 Q---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVP  189 (299)
Q Consensus       119 ~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (299)
                      +         ....++|++.+|.+|+||||+|+|.|+..|-+.|+++.....                     +.+...+
T Consensus       842 ~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~---------------------~~~~~~p  900 (952)
T KOG0735|consen  842 EILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKRE---------------------DEEGVVP  900 (952)
T ss_pred             HHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhc---------------------CccccCC
Confidence            7         345789999999999999999999999999999999887431                     1111122


Q ss_pred             cccHHHHHHHHH--hccCCCCHHHHHHHHHHHHHHHH
Q psy13773        190 EITRAHFEEAMR--FARRSVNDADIRKYEMFAQTLQQ  224 (299)
Q Consensus       190 ~it~~Df~~AL~--~~~PsVsw~DIggL~~vk~~i~~  224 (299)
                      .++...+.....  +.+|+.+.-|.+...++..+++.
T Consensus       901 ~~~~~~~~si~~~~~~~~s~~~~~~~~~~~~~~~~~~  937 (952)
T KOG0735|consen  901 SIDDASLESIFSDSKRKPSRSALDNRKGQDVYSQFLS  937 (952)
T ss_pred             ccchhhhhhhhhccCCCccccccchhhhhhHHHhhcC
Confidence            344444444333  55688888888888777766654

>KOG0729|consensus

Probab=99.89  E-value=2.1e-23  Score=182.71  Aligned_cols=174  Identities=30%  Similarity=0.536  Sum_probs=140.6

Q ss_pred             CeeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-
Q psy13773          1 MISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-   79 (299)
Q Consensus         1 ~~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-   79 (299)
                      ++|.+||++|+.|++++|.++++||||||||+|||.++|++|+.....|+.+-+++++.+|+|+..+.++++|++|+.. 
T Consensus       191 evve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martkk  270 (435)
T KOG0729|consen  191 EVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKK  270 (435)
T ss_pred             HHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccc
Confidence            3688999999999999999999999999999999999999999999999999999999999999999999999998754 


Q ss_pred             ----------HHhhhhcCC---Cchhhh----HHHhhc-----------------CccchhhcCC-----------CccH
Q psy13773         80 ----------NFRYAMGKS---SPSALR----ETIVEV-----------------PNITWEDIGG-----------LEGV  114 (299)
Q Consensus        80 ----------~~~~~~~~~---~~~~~~----~~l~~l-----------------~~~l~~~~~r-----------~p~~  114 (299)
                                ++...+-..   +.+...    +++.++                 |+.+++++.|           +|+.
T Consensus       271 aciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdl  350 (435)
T KOG0729|consen  271 ACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDL  350 (435)
T ss_pred             eEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcc
Confidence                      222222222   112222    222222                 7888888755           5665


Q ss_pred             HHHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCC
Q psy13773        115 KRELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDED  185 (299)
Q Consensus       115 ~~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (299)
                      +.|..         .+..++.++.||..+..-+|++++.+|.+|.+.|++....                          
T Consensus       351 egrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk--------------------------  404 (435)
T KOG0729|consen  351 EGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRK--------------------------  404 (435)
T ss_pred             cccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhh--------------------------
Confidence            55543         4567788899999999999999999999999999976542                          


Q ss_pred             CCcccccHHHHHHHHHhcc
Q psy13773        186 DPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       186 ~~~~~it~~Df~~AL~~~~  204 (299)
                          ..|..||.+|++++.
T Consensus       405 ----~atekdfl~av~kvv  419 (435)
T KOG0729|consen  405 ----VATEKDFLDAVNKVV  419 (435)
T ss_pred             ----hhhHHHHHHHHHHHH
Confidence                467899999998874

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=1e-22  Score=199.13  Aligned_cols=178  Identities=39%  Similarity=0.666  Sum_probs=149.6

Q ss_pred             eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773          2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--   79 (299)
Q Consensus         2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--   79 (299)
                      +|.+|+++|+.|...++.++.++|||||||||||+|++++|.+++.+++.+++.++.++|+|+++++++.+|..|+..  
T Consensus       257 ~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p  336 (494)
T COG0464         257 AIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAP  336 (494)
T ss_pred             HHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCC
Confidence            578999999999999999999999999999999999999999999999999999999999999999999999999854  


Q ss_pred             ---------HHhhhhcCCCchh----hhHHHhhc-----------------CccchhhcCC-----------CccHHHHH
Q psy13773         80 ---------NFRYAMGKSSPSA----LRETIVEV-----------------PNITWEDIGG-----------LEGVKREL  118 (299)
Q Consensus        80 ---------~~~~~~~~~~~~~----~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~  118 (299)
                               .+...+.......    ..+.+.++                 ++.+++++.|           .|+..+|.
T Consensus       337 ~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~  416 (494)
T COG0464         337 SIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERL  416 (494)
T ss_pred             cEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHH
Confidence                     4555555443322    12333333                 7778877644           68888887


Q ss_pred             hh-----------hcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCC
Q psy13773        119 QE-----------LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDP  187 (299)
Q Consensus       119 ~~-----------l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (299)
                      +.           +..++++..+++.|+||||+|+..+|++|++.++++..                             
T Consensus       417 ~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~-----------------------------  467 (494)
T COG0464         417 EIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR-----------------------------  467 (494)
T ss_pred             HHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc-----------------------------
Confidence            61           34578899999999999999999999999999998763                             


Q ss_pred             cccccHHHHHHHHHhccCCCC
Q psy13773        188 VPEITRAHFEEAMRFARRSVN  208 (299)
Q Consensus       188 ~~~it~~Df~~AL~~~~PsVs  208 (299)
                      ...+|.+||.+|+++.+|+|+
T Consensus       468 ~~~~~~~~~~~a~~~~~p~~~  488 (494)
T COG0464         468 RREVTLDDFLDALKKIKPSVT  488 (494)
T ss_pred             cCCccHHHHHHHHHhcCCCCC
Confidence            146999999999999999998

>KOG0727|consensus

Probab=99.89  E-value=1.1e-22  Score=176.98  Aligned_cols=173  Identities=32%  Similarity=0.524  Sum_probs=140.2

Q ss_pred             CeeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-
Q psy13773          1 MISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-   79 (299)
Q Consensus         1 ~~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-   79 (299)
                      +.|.+||.+-++|..++|.+++++|+|||||||||+|++++|+.....|+.+.+++++.+|.|+..+.++.+|+.|+.. 
T Consensus       169 eavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakena  248 (408)
T KOG0727|consen  169 EAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENA  248 (408)
T ss_pred             HHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccC
Confidence            3578999999999999999999999999999999999999999999999999999999999999999999999998754 


Q ss_pred             ----------HHhhhhcCCCchhhh-------HHHhhc-----------------CccchhhcCC-----------CccH
Q psy13773         80 ----------NFRYAMGKSSPSALR-------ETIVEV-----------------PNITWEDIGG-----------LEGV  114 (299)
Q Consensus        80 ----------~~~~~~~~~~~~~~~-------~~l~~l-----------------~~~l~~~~~r-----------~p~~  114 (299)
                                ++.-++-.......+       +++++|                 .+.+++++.|           +|++
T Consensus       249 psiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdr  328 (408)
T KOG0727|consen  249 PSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR  328 (408)
T ss_pred             CcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCch
Confidence                      333333332222222       333333                 4556666644           5666


Q ss_pred             HHHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCC
Q psy13773        115 KRELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDED  185 (299)
Q Consensus       115 ~~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (299)
                      +++..         .+.+++|++.+..+++..||+|+.++|++|.+.|+|...                           
T Consensus       329 rqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nr---------------------------  381 (408)
T KOG0727|consen  329 RQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENR---------------------------  381 (408)
T ss_pred             hhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcc---------------------------
Confidence            65542         567889999999999999999999999999999998754                           


Q ss_pred             CCcccccHHHHHHHHHhc
Q psy13773        186 DPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       186 ~~~~~it~~Df~~AL~~~  203 (299)
                         -.|...||++|-+..
T Consensus       382 ---yvvl~kd~e~ay~~~  396 (408)
T KOG0727|consen  382 ---YVVLQKDFEKAYKTV  396 (408)
T ss_pred             ---eeeeHHHHHHHHHhh
Confidence               257889999998765

>KOG0740|consensus

Probab=99.88  E-value=7.2e-23  Score=192.07  Aligned_cols=206  Identities=30%  Similarity=0.470  Sum_probs=163.6

Q ss_pred             CeeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-
Q psy13773          1 MISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-   79 (299)
Q Consensus         1 ~~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-   79 (299)
                      +.|+||++.|++|..+. .+.+++||+||||+|||+|++|||.+.++.++.|+.+.|.++|+|+.++.++.+|..|+.. 
T Consensus       167 e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~q  245 (428)
T KOG0740|consen  167 EAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGESEKLVRALFKVARSLQ  245 (428)
T ss_pred             hhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChHHHHHHHHHHHHHhcC
Confidence            46899999999998876 6778999999999999999999999999999999999999999999999999999998854 


Q ss_pred             ----------HHhhhhcCCCchhhh----HHHh-------------------hcCccchhhcCC---------CccHHHH
Q psy13773         80 ----------NFRYAMGKSSPSALR----ETIV-------------------EVPNITWEDIGG---------LEGVKRE  117 (299)
Q Consensus        80 ----------~~~~~~~~~~~~~~~----~~l~-------------------~l~~~l~~~~~r---------~p~~~~R  117 (299)
                                .+...+........+    +.+.                   .+||.+|++++|         +|+...|
T Consensus       246 PsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr  325 (428)
T KOG0740|consen  246 PSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETR  325 (428)
T ss_pred             CeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHH
Confidence                      444455444333332    2222                   228888887744         7888888


Q ss_pred             Hhh----------hcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCC
Q psy13773        118 LQE----------LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDP  187 (299)
Q Consensus       118 ~~~----------l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (299)
                      ...          .+.+.+++.|++.|+||||+|+..+|++|++..++......                .+ .......
T Consensus       326 ~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~----------------~~-~~~~~~~  388 (428)
T KOG0740|consen  326 SLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTT----------------DL-EFIDADK  388 (428)
T ss_pred             HHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccch----------------hh-hhcchhc
Confidence            762          23456789999999999999999999999998887654210                00 0011234


Q ss_pred             cccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Q psy13773        188 VPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQ  224 (299)
Q Consensus       188 ~~~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~  224 (299)
                      .++++..||.+|++.++|+|+...+..+++|-.+|+-
T Consensus       389 ~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~  425 (428)
T KOG0740|consen  389 IRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGS  425 (428)
T ss_pred             cCCCCcchHHHHHHhhccccCccccchhHHHhhhhcc
Confidence            5789999999999999999999999999999888753

>KOG0726|consensus

Probab=99.88  E-value=2.3e-22  Score=178.01  Aligned_cols=172  Identities=31%  Similarity=0.517  Sum_probs=137.8

Q ss_pred             eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773          2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--   79 (299)
Q Consensus         2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--   79 (299)
                      .|.+||.||+.|...+++++++|+|||+||+|||.|++++|+...+.|+.+-+++++.+|.|+..+.+|++|+.|..+  
T Consensus       200 svELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~ap  279 (440)
T KOG0726|consen  200 SVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAP  279 (440)
T ss_pred             hhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCC
Confidence            578999999999999999999999999999999999999999999999999999999999999999999999998765  


Q ss_pred             ---------HHhhhhcCCCchhhh-------HHHhhc-----------------CccchhhcCC-----------CccHH
Q psy13773         80 ---------NFRYAMGKSSPSALR-------ETIVEV-----------------PNITWEDIGG-----------LEGVK  115 (299)
Q Consensus        80 ---------~~~~~~~~~~~~~~~-------~~l~~l-----------------~~~l~~~~~r-----------~p~~~  115 (299)
                               ++.-.|-...+...+       ++++++                 ...+|+++.|           .|+..
T Consensus       280 SIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~  359 (440)
T KOG0726|consen  280 SIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK  359 (440)
T ss_pred             ceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchh
Confidence                     222222222221111       223322                 4556666644           45555


Q ss_pred             HHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCC
Q psy13773        116 RELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDD  186 (299)
Q Consensus       116 ~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (299)
                      .|..         .+.++|+++.+-..-..|||+||+++|.+|.+.|+|...-                           
T Consensus       360 TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm---------------------------  412 (440)
T KOG0726|consen  360 TKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRM---------------------------  412 (440)
T ss_pred             hhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHh---------------------------
Confidence            4432         5678999999888789999999999999999999987652                           


Q ss_pred             CcccccHHHHHHHHHhc
Q psy13773        187 PVPEITRAHFEEAMRFA  203 (299)
Q Consensus       187 ~~~~it~~Df~~AL~~~  203 (299)
                         .++.+||.+|.+++
T Consensus       413 ---~vt~~DF~ka~e~V  426 (440)
T KOG0726|consen  413 ---KVTMEDFKKAKEKV  426 (440)
T ss_pred             ---hccHHHHHHHHHHH
Confidence               48899999998765

>KOG0652|consensus

Probab=99.88  E-value=1.2e-22  Score=177.51  Aligned_cols=174  Identities=30%  Similarity=0.520  Sum_probs=140.8

Q ss_pred             CeeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-
Q psy13773          1 MISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-   79 (299)
Q Consensus         1 ~~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-   79 (299)
                      ++|++|++|++.|.+++|.+++++|+|||||+|||.++|+-|....+.|..+-+..++.+++|...+.+|..|..|... 
T Consensus       185 EAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEka  264 (424)
T KOG0652|consen  185 EAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA  264 (424)
T ss_pred             HHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccC
Confidence            3689999999999999999999999999999999999999999999999999999999999999999999999887643 


Q ss_pred             ----------HHhhhhcCCCchhhh-------HHHhhc-----------------CccchhhcCC-----------CccH
Q psy13773         80 ----------NFRYAMGKSSPSALR-------ETIVEV-----------------PNITWEDIGG-----------LEGV  114 (299)
Q Consensus        80 ----------~~~~~~~~~~~~~~~-------~~l~~l-----------------~~~l~~~~~r-----------~p~~  114 (299)
                                ++.-++........+       +++.++                 .+.+++++.|           .|+.
T Consensus       265 P~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne  344 (424)
T KOG0652|consen  265 PTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNE  344 (424)
T ss_pred             CeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCCh
Confidence                      333333333222222       222222                 5666777643           4555


Q ss_pred             HHHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCC
Q psy13773        115 KRELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDED  185 (299)
Q Consensus       115 ~~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (299)
                      ..|..         .+..++++++||+.|++|.|++.+++|.+|.+.|+||..                           
T Consensus       345 ~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~a---------------------------  397 (424)
T KOG0652|consen  345 EARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGA---------------------------  397 (424)
T ss_pred             HHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccc---------------------------
Confidence            55443         567899999999999999999999999999999999864                           


Q ss_pred             CCcccccHHHHHHHHHhcc
Q psy13773        186 DPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       186 ~~~~~it~~Df~~AL~~~~  204 (299)
                         ..|+.+||.+++.+++
T Consensus       398 ---tev~heDfmegI~eVq  413 (424)
T KOG0652|consen  398 ---TEVTHEDFMEGILEVQ  413 (424)
T ss_pred             ---ccccHHHHHHHHHHHH
Confidence               2588999999998775

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=99.88  E-value=4.7e-22  Score=188.41  Aligned_cols=174  Identities=31%  Similarity=0.492  Sum_probs=138.2

Q ss_pred             eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773          2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--   79 (299)
Q Consensus         2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--   79 (299)
                      .|.+|+.+|++|..+++.++++++|+||||||||++++++|++++..++.+.+.++..++.++.+..++.+|..+...  
T Consensus       160 ~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P  239 (398)
T PTZ00454        160 AVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAP  239 (398)
T ss_pred             HHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCC
Confidence            367899999999999999999999999999999999999999999999999999999999999999999999987653  


Q ss_pred             ---------HHhhhhcCCCc---hh----hhHHHhhc-----------------CccchhhcCC-----------CccHH
Q psy13773         80 ---------NFRYAMGKSSP---SA----LRETIVEV-----------------PNITWEDIGG-----------LEGVK  115 (299)
Q Consensus        80 ---------~~~~~~~~~~~---~~----~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~  115 (299)
                               .+...+.....   ..    ..+++..+                 ++.+++++.|           .|+..
T Consensus       240 ~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~  319 (398)
T PTZ00454        240 SIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR  319 (398)
T ss_pred             eEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHH
Confidence                     23322211111   11    11222221                 5666666543           68888


Q ss_pred             HHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCC
Q psy13773        116 RELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDD  186 (299)
Q Consensus       116 ~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (299)
                      +|..         .+..++++..++.+|+||||+|++.+|.+|++.|+++..                            
T Consensus       320 ~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~----------------------------  371 (398)
T PTZ00454        320 QKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNR----------------------------  371 (398)
T ss_pred             HHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC----------------------------
Confidence            8765         334678999999999999999999999999999988642                            


Q ss_pred             CcccccHHHHHHHHHhccC
Q psy13773        187 PVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       187 ~~~~it~~Df~~AL~~~~P  205 (299)
                        ..|+.+||.+|++++..
T Consensus       372 --~~i~~~df~~A~~~v~~  388 (398)
T PTZ00454        372 --YVILPKDFEKGYKTVVR  388 (398)
T ss_pred             --CccCHHHHHHHHHHHHh
Confidence              36899999999998754

>CHL00195 ycf46 Ycf46; Provisional

Probab=99.86  E-value=8.9e-21  Score=183.53  Aligned_cols=179  Identities=22%  Similarity=0.271  Sum_probs=139.0

Q ss_pred             hhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-----------
Q psy13773         11 EKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-----------   79 (299)
Q Consensus        11 ~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-----------   79 (299)
                      ..+..+++.+++++||+||||||||+++++||++++.+++.+++..+.++++|+++.+++.+|..+...           
T Consensus       249 ~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID  328 (489)
T CHL00195        249 KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEID  328 (489)
T ss_pred             HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhh
Confidence            345667889999999999999999999999999999999999999999999999999999999987753           


Q ss_pred             HHhhhhcCC-CchhhhH----HHhhc---------------CccchhhcCC-----------CccHHHHHhh--------
Q psy13773         80 NFRYAMGKS-SPSALRE----TIVEV---------------PNITWEDIGG-----------LEGVKRELQE--------  120 (299)
Q Consensus        80 ~~~~~~~~~-~~~~~~~----~l~~l---------------~~~l~~~~~r-----------~p~~~~R~~~--------  120 (299)
                      .+...+... ......+    ++..+               ++.+++++.|           .|+..+|.+.        
T Consensus       329 ~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~  408 (489)
T CHL00195        329 KAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKF  408 (489)
T ss_pred             hhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhc
Confidence            222211111 1111111    11111               5566666533           6888888761        


Q ss_pred             ---hcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHH
Q psy13773        121 ---LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFE  197 (299)
Q Consensus       121 ---l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~  197 (299)
                         ...+++++.||++|+||||+||+++|.+|+..|..+.                               ..++.+||.
T Consensus       409 ~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-------------------------------~~lt~~dl~  457 (489)
T CHL00195        409 RPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-------------------------------REFTTDDIL  457 (489)
T ss_pred             CCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-------------------------------CCcCHHHHH
Confidence               1246789999999999999999999999988886532                               358999999


Q ss_pred             HHHHhccCC--CCHHHHHHHHHHHH
Q psy13773        198 EAMRFARRS--VNDADIRKYEMFAQ  220 (299)
Q Consensus       198 ~AL~~~~Ps--Vsw~DIggL~~vk~  220 (299)
                      +|+++++|.  +.-++|..|++|..
T Consensus       458 ~a~~~~~Pls~~~~e~i~~~~~Wa~  482 (489)
T CHL00195        458 LALKQFIPLAQTEKEQIEALQNWAS  482 (489)
T ss_pred             HHHHhcCCCcccCHHHHHHHHHHHH
Confidence            999999996  67789999999876

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=99.86  E-value=2.9e-21  Score=183.26  Aligned_cols=176  Identities=38%  Similarity=0.577  Sum_probs=138.5

Q ss_pred             eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773          2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--   79 (299)
Q Consensus         2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--   79 (299)
                      .|.+|+.+|+.|..+++.++.+++|+||||||||++++++|.+++..++.+++.++...+.|+.+..++.+|..+...  
T Consensus       146 ~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p  225 (389)
T PRK03992        146 AVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAP  225 (389)
T ss_pred             HHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCC
Confidence            356899999999999999999999999999999999999999999999999999999999999999999999987653  


Q ss_pred             ---------HHhhhhcCCCc---hh----hhHHHhhc-----------------CccchhhcCC-----------CccHH
Q psy13773         80 ---------NFRYAMGKSSP---SA----LRETIVEV-----------------PNITWEDIGG-----------LEGVK  115 (299)
Q Consensus        80 ---------~~~~~~~~~~~---~~----~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~  115 (299)
                               .+...+.....   ..    ..+++.++                 ++.+++++.|           .|+..
T Consensus       226 ~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~  305 (389)
T PRK03992        226 SIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEE  305 (389)
T ss_pred             eEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHH
Confidence                     23322222111   11    11222211                 4455555532           68888


Q ss_pred             HHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCC
Q psy13773        116 RELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDD  186 (299)
Q Consensus       116 ~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (299)
                      +|.+         .+..++++..+|..|+||||+|++.+|++|++.|+++..                            
T Consensus       306 ~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~----------------------------  357 (389)
T PRK03992        306 GRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDR----------------------------  357 (389)
T ss_pred             HHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC----------------------------
Confidence            8876         233568899999999999999999999999999987531                            


Q ss_pred             CcccccHHHHHHHHHhccCCC
Q psy13773        187 PVPEITRAHFEEAMRFARRSV  207 (299)
Q Consensus       187 ~~~~it~~Df~~AL~~~~PsV  207 (299)
                        ..|+.+||.+|+++++++-
T Consensus       358 --~~i~~~d~~~A~~~~~~~~  376 (389)
T PRK03992        358 --TEVTMEDFLKAIEKVMGKE  376 (389)
T ss_pred             --CCcCHHHHHHHHHHHhccc
Confidence              3589999999999998853

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=99.84  E-value=1.3e-20  Score=180.02  Aligned_cols=173  Identities=32%  Similarity=0.515  Sum_probs=135.2

Q ss_pred             eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773          2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--   79 (299)
Q Consensus         2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--   79 (299)
                      +|.+|+.+|++|..+++.++.+++|+||||||||++++++|+++...++.+.+.++...+.|+....++.+|..+...  
T Consensus       198 ~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P  277 (438)
T PTZ00361        198 AVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAP  277 (438)
T ss_pred             HHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCCC
Confidence            356899999999999999999999999999999999999999999999999999999999999999999999877643  


Q ss_pred             ---------HHhhhhcCCCc---hh----hhHHHhhc-----------------CccchhhcCC-----------CccHH
Q psy13773         80 ---------NFRYAMGKSSP---SA----LRETIVEV-----------------PNITWEDIGG-----------LEGVK  115 (299)
Q Consensus        80 ---------~~~~~~~~~~~---~~----~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~  115 (299)
                               .+...+.....   ..    ..+++..+                 ++.+++++.|           .|+..
T Consensus       278 ~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~  357 (438)
T PTZ00361        278 SIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEK  357 (438)
T ss_pred             cEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHH
Confidence                     22222211111   00    11222211                 4555555532           67777


Q ss_pred             HHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCC
Q psy13773        116 RELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDD  186 (299)
Q Consensus       116 ~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (299)
                      +|.+         .+..++++..++..++||||+|++.+|.+|++.|+++..                            
T Consensus       358 ~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r----------------------------  409 (438)
T PTZ00361        358 TKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERR----------------------------  409 (438)
T ss_pred             HHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcC----------------------------
Confidence            7765         234678999999999999999999999999999998652                            


Q ss_pred             CcccccHHHHHHHHHhcc
Q psy13773        187 PVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       187 ~~~~it~~Df~~AL~~~~  204 (299)
                        ..|+.+||.+|+.++.
T Consensus       410 --~~Vt~~D~~~A~~~v~  425 (438)
T PTZ00361        410 --MKVTQADFRKAKEKVL  425 (438)
T ss_pred             --CccCHHHHHHHHHHHH
Confidence              3689999999999874

>KOG0731|consensus

Probab=99.83  E-value=2.4e-20  Score=184.82  Aligned_cols=170  Identities=38%  Similarity=0.589  Sum_probs=140.5

Q ss_pred             ccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-----
Q psy13773          5 YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-----   79 (299)
Q Consensus         5 ~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-----   79 (299)
                      -=|++|+.|..++++.|+++||+||||||||.|+|++|++.+.+|+.+++++++..+.+.....++.+|..++..     
T Consensus       328 ~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~ii  407 (774)
T KOG0731|consen  328 KFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAPSII  407 (774)
T ss_pred             HHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhccCCeEE
Confidence            348899999999999999999999999999999999999999999999999999999988889999999999875     


Q ss_pred             ------HHhhhhcC---CC-----chhhhHHHhhc-----------------CccchhhcCC-----------CccHHHH
Q psy13773         80 ------NFRYAMGK---SS-----PSALRETIVEV-----------------PNITWEDIGG-----------LEGVKRE  117 (299)
Q Consensus        80 ------~~~~~~~~---~~-----~~~~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R  117 (299)
                            ++...+..   ..     ...+.+++.++                 ++.+|+++.|           .|+...|
T Consensus       408 fideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r  487 (774)
T KOG0731|consen  408 FIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGR  487 (774)
T ss_pred             EecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhh
Confidence                  44444421   11     12333666655                 7888888755           6888877


Q ss_pred             Hh---------hh-cccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCC
Q psy13773        118 LQ---------EL-VQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDP  187 (299)
Q Consensus       118 ~~---------~l-~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (299)
                      ..         .+ .+++++..+|.+|+||||+||+.||.+|+..|.|+..                             
T Consensus       488 ~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~-----------------------------  538 (774)
T KOG0731|consen  488 ASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL-----------------------------  538 (774)
T ss_pred             HHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc-----------------------------
Confidence            75         22 3778887799999999999999999999999998753                             


Q ss_pred             cccccHHHHHHHHHhcc
Q psy13773        188 VPEITRAHFEEAMRFAR  204 (299)
Q Consensus       188 ~~~it~~Df~~AL~~~~  204 (299)
                       ..|+..||+.|++++.
T Consensus       539 -~~i~~~~~~~a~~Rvi  554 (774)
T KOG0731|consen  539 -REIGTKDLEYAIERVI  554 (774)
T ss_pred             -CccchhhHHHHHHHHh
Confidence             3688999999999553

>KOG0734|consensus

Probab=99.80  E-value=1.7e-19  Score=170.44  Aligned_cols=152  Identities=34%  Similarity=0.516  Sum_probs=125.3

Q ss_pred             ccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHHH----
Q psy13773          5 YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMEN----   80 (299)
Q Consensus         5 ~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~----   80 (299)
                      --|+.|+.|..|+=+.|++|||+||||+|||+|+|++|++.+.+|++..++++-..++|...+.+|.+|..|+..+    
T Consensus       321 efLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcII  400 (752)
T KOG0734|consen  321 EFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCII  400 (752)
T ss_pred             HHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHHhcCCeEE
Confidence            3478899999999999999999999999999999999999999999999999999999999999999999998763    


Q ss_pred             -------HhhhhcCCCch----hhhHHHhhc-----------------CccchhhcCC-----------CccHHHHHh--
Q psy13773         81 -------FRYAMGKSSPS----ALRETIVEV-----------------PNITWEDIGG-----------LEGVKRELQ--  119 (299)
Q Consensus        81 -------~~~~~~~~~~~----~~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~~--  119 (299)
                             +...|......    .+.++|.+|                 |+.+|+++.|           .|+.+.|.+  
T Consensus       401 FIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL  480 (752)
T KOG0734|consen  401 FIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEIL  480 (752)
T ss_pred             EEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHH
Confidence                   22233222221    223555555                 7888888755           678887876  


Q ss_pred             -------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q psy13773        120 -------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQ  156 (299)
Q Consensus       120 -------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r  156 (299)
                             ...++||++-||+=|.||||+||..++..|+..|...
T Consensus       481 ~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~d  524 (752)
T KOG0734|consen  481 KLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVD  524 (752)
T ss_pred             HHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhc
Confidence                   3457999999999999999999999999998877553

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=99.80  E-value=4.9e-19  Score=166.81  Aligned_cols=171  Identities=40%  Similarity=0.634  Sum_probs=130.2

Q ss_pred             eeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH---
Q psy13773          3 STYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME---   79 (299)
Q Consensus         3 v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~---   79 (299)
                      |.+|+.+|+.|..+++.++.+++|+||||||||++++++|..++..++.+.+.++...+.++....++.+|..+...   
T Consensus       138 i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~  217 (364)
T TIGR01242       138 VELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPS  217 (364)
T ss_pred             HHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCc
Confidence            56899999999999999999999999999999999999999999999999999998888898888899999877542   


Q ss_pred             --------HHhhhhcCCC---ch----hhhHHHhhc-----------------CccchhhcCC-----------CccHHH
Q psy13773         80 --------NFRYAMGKSS---PS----ALRETIVEV-----------------PNITWEDIGG-----------LEGVKR  116 (299)
Q Consensus        80 --------~~~~~~~~~~---~~----~~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~  116 (299)
                              .+...+....   ..    ...+.+.++                 ++.+++++.+           .|+..+
T Consensus       218 il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~  297 (364)
T TIGR01242       218 IIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEG  297 (364)
T ss_pred             EEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHH
Confidence                    1211111111   00    111222111                 3334444432           677777


Q ss_pred             HHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCC
Q psy13773        117 ELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDP  187 (299)
Q Consensus       117 R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (299)
                      |.+         .+..++++..++..|+||||+|++.+|.+|++.|+++..                             
T Consensus       298 r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~-----------------------------  348 (364)
T TIGR01242       298 RLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREER-----------------------------  348 (364)
T ss_pred             HHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC-----------------------------
Confidence            766         223457899999999999999999999999999987642                             


Q ss_pred             cccccHHHHHHHHHhc
Q psy13773        188 VPEITRAHFEEAMRFA  203 (299)
Q Consensus       188 ~~~it~~Df~~AL~~~  203 (299)
                       ..|+.+||.+|++++
T Consensus       349 -~~i~~~d~~~a~~~~  363 (364)
T TIGR01242       349 -DYVTMDDFIKAVEKV  363 (364)
T ss_pred             -CccCHHHHHHHHHHh
Confidence             368999999999875

Many proteins may score above the trusted cutoff because an internal

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=99.77  E-value=4.3e-18  Score=148.94  Aligned_cols=166  Identities=30%  Similarity=0.548  Sum_probs=126.1

Q ss_pred             CcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhh-
Q psy13773          7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAM-   85 (299)
Q Consensus         7 l~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~-   85 (299)
                      |..|+.|-.+   .++.||+|||||+|||+++|+||++...+++.+...+|...++|+..+.++++|..|+..+.|... 
T Consensus       140 LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~aPcivFi  216 (368)
T COG1223         140 LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFI  216 (368)
T ss_pred             hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEe
Confidence            6678888774   588999999999999999999999999999999999999999999999999999999865222211 


Q ss_pred             ------------cCCC---chhhhHHHhhc-----------------CccchhhcCC---------CccHHHHHh-----
Q psy13773         86 ------------GKSS---PSALRETIVEV-----------------PNITWEDIGG---------LEGVKRELQ-----  119 (299)
Q Consensus        86 ------------~~~~---~~~~~~~l~~l-----------------~~~l~~~~~r---------~p~~~~R~~-----  119 (299)
                                  ++..   +.....+|+++                 ++.+|+++++         +|+.++|.+     
T Consensus       217 DE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y  296 (368)
T COG1223         217 DELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYY  296 (368)
T ss_pred             hhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHH
Confidence                        1111   11122334444                 6777777643         788888876     


Q ss_pred             ----hhcccCCHHHHHHhcCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHH
Q psy13773        120 ----ELVQDVDLNYIAKVTNGFSGADLTE-ICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRA  194 (299)
Q Consensus       120 ----~l~~~v~l~~LA~~t~glSggDl~~-Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~  194 (299)
                          ++--+.+++.++++|.||||+||+. +.+.|.+.|+....                              ..|+.+
T Consensus       297 ~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~------------------------------e~v~~e  346 (368)
T COG1223         297 AKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDR------------------------------EKVERE  346 (368)
T ss_pred             HHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhch------------------------------hhhhHH
Confidence                3334667899999999999999875 55556666655432                              258899


Q ss_pred             HHHHHHHhccC
Q psy13773        195 HFEEAMRFARR  205 (299)
Q Consensus       195 Df~~AL~~~~P  205 (299)
                      ||+.|+++-++
T Consensus       347 die~al~k~r~  357 (368)
T COG1223         347 DIEKALKKERK  357 (368)
T ss_pred             HHHHHHHhhcc
Confidence            99999998665

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=99.77  E-value=1.1e-17  Score=163.62  Aligned_cols=169  Identities=37%  Similarity=0.587  Sum_probs=130.8

Q ss_pred             cCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH------
Q psy13773          6 PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME------   79 (299)
Q Consensus         6 pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~------   79 (299)
                      .+.+|+.|..++...+++++|+||||||||+++++||++.+.+++.+++.++.+.+.+...+.++.+|..+...      
T Consensus        73 ~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~  152 (495)
T TIGR01241        73 FLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIF  152 (495)
T ss_pred             HHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEE
Confidence            36789999999999999999999999999999999999999999999999999999999999999999988653      


Q ss_pred             -----HHhhhhcCCC---c----hhhhHHHhhc-----------------CccchhhcCC-----------CccHHHHHh
Q psy13773         80 -----NFRYAMGKSS---P----SALRETIVEV-----------------PNITWEDIGG-----------LEGVKRELQ  119 (299)
Q Consensus        80 -----~~~~~~~~~~---~----~~~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~~  119 (299)
                           .+...+....   .    ....+++.++                 ++.+++++.|           .|+..+|.+
T Consensus       153 iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~  232 (495)
T TIGR01241       153 IDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREE  232 (495)
T ss_pred             EechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHH
Confidence                 3333332210   0    0111222221                 5566666643           688888776


Q ss_pred             ---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCccc
Q psy13773        120 ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPE  190 (299)
Q Consensus       120 ---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (299)
                               .+..++++..+|..|.||||+|++.+|.+|+..|.++..                              ..
T Consensus       233 il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~------------------------------~~  282 (495)
T TIGR01241       233 ILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNK------------------------------TE  282 (495)
T ss_pred             HHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC------------------------------CC
Confidence                     123467889999999999999999999999888766421                              36


Q ss_pred             ccHHHHHHHHHhcc
Q psy13773        191 ITRAHFEEAMRFAR  204 (299)
Q Consensus       191 it~~Df~~AL~~~~  204 (299)
                      |+.+||++|+.++.
T Consensus       283 i~~~~l~~a~~~~~  296 (495)
T TIGR01241       283 ITMNDIEEAIDRVI  296 (495)
T ss_pred             CCHHHHHHHHHHHh
Confidence            89999999999874

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>KOG0651|consensus

Probab=99.76  E-value=1.7e-18  Score=154.63  Aligned_cols=172  Identities=31%  Similarity=0.543  Sum_probs=136.7

Q ss_pred             eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773          2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--   79 (299)
Q Consensus         2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--   79 (299)
                      .|.+|+..|++|..++|++|.+++||||+|+|||.+++++|..++.+++.+....|.+++.|++.+.||+.|..|+..  
T Consensus       147 ~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~p  226 (388)
T KOG0651|consen  147 VIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIP  226 (388)
T ss_pred             heEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCc
Confidence            588999999999999999999999999999999999999999999999999999999999999999999999998865  


Q ss_pred             ---------HHhhhhcCCCchhhh-------HHHhhc-----------------CccchhhcCC-----------CccHH
Q psy13773         80 ---------NFRYAMGKSSPSALR-------ETIVEV-----------------PNITWEDIGG-----------LEGVK  115 (299)
Q Consensus        80 ---------~~~~~~~~~~~~~~~-------~~l~~l-----------------~~~l~~~~~r-----------~p~~~  115 (299)
                               ++...+.....+..+       +++.++                 |+.+++++.|           +|++.
T Consensus       227 ciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~  306 (388)
T KOG0651|consen  227 CIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQ  306 (388)
T ss_pred             eEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchh
Confidence                     222222222222222       222222                 7777777755           46666


Q ss_pred             HHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCC
Q psy13773        116 RELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDD  186 (299)
Q Consensus       116 ~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (299)
                      .|..         .....++.+.+.+.+++|.|+|++.+|.+|.+.|++....                           
T Consensus       307 ~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~---------------------------  359 (388)
T KOG0651|consen  307 ARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERD---------------------------  359 (388)
T ss_pred             hceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhH---------------------------
Confidence            6654         1223567788999999999999999999999999876542                           


Q ss_pred             CcccccHHHHHHHHHhc
Q psy13773        187 PVPEITRAHFEEAMRFA  203 (299)
Q Consensus       187 ~~~~it~~Df~~AL~~~  203 (299)
                         .+-.+||.+|+.+.
T Consensus       360 ---~vl~Ed~~k~vrk~  373 (388)
T KOG0651|consen  360 ---EVLHEDFMKLVRKQ  373 (388)
T ss_pred             ---HHhHHHHHHHHHHH
Confidence               35579999999765

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=1.1e-18  Score=170.15  Aligned_cols=172  Identities=36%  Similarity=0.561  Sum_probs=142.4

Q ss_pred             eeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH---
Q psy13773          3 STYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME---   79 (299)
Q Consensus         3 v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~---   79 (299)
                      |+-.|+.|..|..++..-|++++|+||||+|||+|+|++|++.+.+++.+++++.+..++|--...+|.+|..|+..   
T Consensus       165 iVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~  244 (596)
T COG0465         165 LVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPC  244 (596)
T ss_pred             HHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCC
Confidence            44578999999999999999999999999999999999999999999999999999999999999999999999864   


Q ss_pred             --------HHhhhhcCC-Cc------hhhhHHHhhc-----------------CccchhhcCC-----------CccHHH
Q psy13773         80 --------NFRYAMGKS-SP------SALRETIVEV-----------------PNITWEDIGG-----------LEGVKR  116 (299)
Q Consensus        80 --------~~~~~~~~~-~~------~~~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~  116 (299)
                              +...+|... +.      ....++++++                 |+.+|+++.|           .|+...
T Consensus       245 IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~g  324 (596)
T COG0465         245 IIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKG  324 (596)
T ss_pred             eEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhh
Confidence                    223333211 10      1233555555                 6778888855           688777


Q ss_pred             HHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCC
Q psy13773        117 ELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDP  187 (299)
Q Consensus       117 R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (299)
                      |..         .+..++++..+|+.|.||||+|+..++.+|++.|.|+..                             
T Consensus       325 Re~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~-----------------------------  375 (596)
T COG0465         325 REQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNK-----------------------------  375 (596)
T ss_pred             HHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcC-----------------------------
Confidence            765         456789999999999999999999999999999998764                             


Q ss_pred             cccccHHHHHHHHHhcc
Q psy13773        188 VPEITRAHFEEAMRFAR  204 (299)
Q Consensus       188 ~~~it~~Df~~AL~~~~  204 (299)
                       ..|+..||++|+.++-
T Consensus       376 -~~i~~~~i~ea~drv~  391 (596)
T COG0465         376 -KEITMRDIEEAIDRVI  391 (596)
T ss_pred             -eeEeccchHHHHHHHh
Confidence             3688999999998874

>CHL00206 ycf2 Ycf2; Provisional

Probab=99.74  E-value=1.6e-17  Score=175.81  Aligned_cols=167  Identities=18%  Similarity=0.207  Sum_probs=121.1

Q ss_pred             cCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhcc------------------------
Q psy13773          6 PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW------------------------   61 (299)
Q Consensus         6 pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~------------------------   61 (299)
                      |...+..+..+++.+++||||+||||||||.|||+||++.+.+++.|++.++...+                        
T Consensus      1615 ~s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~ 1694 (2281)
T CHL00206       1615 PSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDID 1694 (2281)
T ss_pred             cccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccc
Confidence            44455677888999999999999999999999999999999999999999987643                        


Q ss_pred             -----------------ccccHH--HHHHHHHHHHHH-----------HHhhhhcCCCchhhhHHHh-------------
Q psy13773         62 -----------------FGESEA--NVRDIFDKVTME-----------NFRYAMGKSSPSALRETIV-------------   98 (299)
Q Consensus        62 -----------------~g~~~~--~i~~~f~~a~~~-----------~~~~~~~~~~~~~~~~~l~-------------   98 (299)
                                       ++..+.  .++.+|+.|+..           +++.....  .....+++.             
T Consensus      1695 ~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~--~ltL~qLLneLDg~~~~~s~~~ 1772 (2281)
T CHL00206       1695 RDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESN--YLSLGLLVNSLSRDCERCSTRN 1772 (2281)
T ss_pred             cccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccc--eehHHHHHHHhccccccCCCCC
Confidence                             111222  378899998875           22211100  000111111             


Q ss_pred             -------hcCccchhhcCC-----------CccHHHHHhhh-----------c-ccCCHHHHHHhcCCCCHHHHHHHHHH
Q psy13773         99 -------EVPNITWEDIGG-----------LEGVKRELQEL-----------V-QDVDLNYIAKVTNGFSGADLTEICQR  148 (299)
Q Consensus        99 -------~l~~~l~~~~~r-----------~p~~~~R~~~l-----------~-~~v~l~~LA~~t~glSggDl~~Lv~~  148 (299)
                             ..|+.+|+|+.|           .|+..+|.+.+           . ..+++..+|.+|.||||+||..||.+
T Consensus      1773 VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNE 1852 (2281)
T CHL00206       1773 ILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNE 1852 (2281)
T ss_pred             EEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHH
Confidence                   128888888865           45665555421           1 23678999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        149 ACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       149 A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                      |++.|+++..                              ..|+.+||..|+.+..
T Consensus      1853 AaliAirq~k------------------------------s~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206       1853 ALSISITQKK------------------------------SIIDTNTIRSALHRQT 1878 (2281)
T ss_pred             HHHHHHHcCC------------------------------CccCHHHHHHHHHHHH
Confidence            9999998753                              2578899999988764

>KOG0732|consensus

Probab=99.71  E-value=9e-18  Score=170.73  Aligned_cols=211  Identities=28%  Similarity=0.442  Sum_probs=147.3

Q ss_pred             eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC-----CeecccchhhhhccccccHHHHHHHHHHH
Q psy13773          2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA-----NFISVKGPELLTMWFGESEANVRDIFDKV   76 (299)
Q Consensus         2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~-----~~i~i~~~~l~~~~~g~~~~~i~~~f~~a   76 (299)
                      .|.+||+.|+.|.+|++.+++++|++||||+|||..++++|..+..     .++.-++.+..++|+|+.++.++.+|+.|
T Consensus       280 mVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA  359 (1080)
T KOG0732|consen  280 MVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEA  359 (1080)
T ss_pred             HHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999998864     34445788999999999999999999999


Q ss_pred             HHH-----------HHhhhhcCC---Cchhhh-HHHh---hc--------------CccchhhcCC-----------Ccc
Q psy13773         77 TME-----------NFRYAMGKS---SPSALR-ETIV---EV--------------PNITWEDIGG-----------LEG  113 (299)
Q Consensus        77 ~~~-----------~~~~~~~~~---~~~~~~-~~l~---~l--------------~~~l~~~~~r-----------~p~  113 (299)
                      +..           .+.+.++.-   ...... .+|.   .+              ++.++++++|           +|+
T Consensus       360 ~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~  439 (1080)
T KOG0732|consen  360 QKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPD  439 (1080)
T ss_pred             hccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCcccceeEeeeCCc
Confidence            865           122222111   001111 1111   11              6677777755           677


Q ss_pred             HHHHHhhh-------cccC---CHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCC
Q psy13773        114 VKRELQEL-------VQDV---DLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETED  183 (299)
Q Consensus       114 ~~~R~~~l-------~~~v---~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (299)
                      ...|...+       ..-+   -+..+|..|.||-|+|++.+|..|++.+++|.-........           .+ .  
T Consensus       440 ~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~-----------kl-~--  505 (1080)
T KOG0732|consen  440 VDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSSSD-----------KL-L--  505 (1080)
T ss_pred             hHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeecccc-----------cc-c--
Confidence            77776521       1222   23789999999999999999999999999875421100000           00 0  


Q ss_pred             CCCCcccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        184 EDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       184 ~~~~~~~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      -......|..+||..|+.+..|+                                    ..|+++.+++|.+|++++|.
T Consensus       506 ~d~~~ikV~~~~f~~A~~~i~ps------------------------------------~~R~~~~~s~Pl~~~~~~ll  548 (1080)
T KOG0732|consen  506 IDVALIKVEVRDFVEAMSRITPS------------------------------------SRRSSVIFSRPLSTYLKPLL  548 (1080)
T ss_pred             ccchhhhhhhHhhhhhhhccCCC------------------------------------CCccccCCCCCCCcceeccc
Confidence            01112236677777777666551                                    34668999999999999965

>CHL00176 ftsH cell division protein; Validated

Probab=99.71  E-value=4.9e-17  Score=162.13  Aligned_cols=169  Identities=36%  Similarity=0.546  Sum_probs=129.0

Q ss_pred             ccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-----
Q psy13773          5 YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-----   79 (299)
Q Consensus         5 ~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-----   79 (299)
                      ..++.|+.|..++...+++++|+||||||||++++++|++.+.+++.++|.++...+.+.....++.+|..+...     
T Consensus       200 ~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~IL  279 (638)
T CHL00176        200 SFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIV  279 (638)
T ss_pred             HHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEE
Confidence            347789999999999999999999999999999999999999999999999998888887788899999988753     


Q ss_pred             ------HHhhhhcCC---Cch----hhhHHHhhc-----------------CccchhhcCC-----------CccHHHHH
Q psy13773         80 ------NFRYAMGKS---SPS----ALRETIVEV-----------------PNITWEDIGG-----------LEGVKREL  118 (299)
Q Consensus        80 ------~~~~~~~~~---~~~----~~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~  118 (299)
                            .+...+...   ...    ...+++.++                 ++.+++++.|           .|+.++|.
T Consensus       280 fIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~  359 (638)
T CHL00176        280 FIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRL  359 (638)
T ss_pred             EEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHH
Confidence                  232222211   011    111233222                 3445555532           68888887


Q ss_pred             h---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcc
Q psy13773        119 Q---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVP  189 (299)
Q Consensus       119 ~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (299)
                      .         .+..++++..+|.+|.||||+||+.+|.+|+..|.++..                              .
T Consensus       360 ~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~------------------------------~  409 (638)
T CHL00176        360 DILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKK------------------------------A  409 (638)
T ss_pred             HHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC------------------------------C
Confidence            6         234567789999999999999999999999888876532                              3


Q ss_pred             cccHHHHHHHHHhc
Q psy13773        190 EITRAHFEEAMRFA  203 (299)
Q Consensus       190 ~it~~Df~~AL~~~  203 (299)
                      .||.+||++|+.++
T Consensus       410 ~It~~dl~~Ai~rv  423 (638)
T CHL00176        410 TITMKEIDTAIDRV  423 (638)
T ss_pred             CcCHHHHHHHHHHH
Confidence            68999999999887

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=8.7e-18  Score=152.88  Aligned_cols=57  Identities=18%  Similarity=0.171  Sum_probs=53.9

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773        204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      +|.|+++|||||++-.++|+|+|++  ||+|||+|.. |+.--.|||||||||||||||-
T Consensus       145 ~PdvtY~dIGGL~~Qi~EirE~VEL--PL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLA  202 (406)
T COG1222         145 KPDVTYEDIGGLDEQIQEIREVVEL--PLKNPELFEELGIDPPKGVLLYGPPGTGKTLLA  202 (406)
T ss_pred             CCCCChhhccCHHHHHHHHHHHhcc--cccCHHHHHHcCCCCCCceEeeCCCCCcHHHHH
Confidence            5899999999999999999999999  9999999976 7788899999999999999984

>TIGR03689 pup_AAA proteasome ATPase

Probab=99.66  E-value=1.8e-15  Score=146.82  Aligned_cols=77  Identities=47%  Similarity=0.947  Sum_probs=68.8

Q ss_pred             eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCC----------eecccchhhhhccccccHHHHHH
Q psy13773          2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN----------FISVKGPELLTMWFGESEANVRD   71 (299)
Q Consensus         2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~----------~i~i~~~~l~~~~~g~~~~~i~~   71 (299)
                      .|.+|+++|++|..+++.++.++|||||||||||++++++|+++...          ++.+.+.++.+++.+++++.++.
T Consensus       197 ~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~  276 (512)
T TIGR03689       197 AVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRL  276 (512)
T ss_pred             HHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHH
Confidence            36789999999999999999999999999999999999999987543          55677788889999999999999


Q ss_pred             HHHHHHH
Q psy13773         72 IFDKVTM   78 (299)
Q Consensus        72 ~f~~a~~   78 (299)
                      +|+.++.
T Consensus       277 iF~~Ar~  283 (512)
T TIGR03689       277 IFQRARE  283 (512)
T ss_pred             HHHHHHH
Confidence            9998765

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=99.66  E-value=8.9e-16  Score=154.20  Aligned_cols=169  Identities=34%  Similarity=0.549  Sum_probs=129.2

Q ss_pred             CcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-------
Q psy13773          7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-------   79 (299)
Q Consensus         7 l~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-------   79 (299)
                      +..|+.|..++...+++++|+||+|||||+++++++++++.+++.+++.++...+.+.....++.+|..+...       
T Consensus       171 ~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifI  250 (644)
T PRK10733        171 LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFI  250 (644)
T ss_pred             hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEe
Confidence            4567777777777888999999999999999999999999999999999999888898888999999887643       


Q ss_pred             ----HHhhhhcCCC---ch----hhhHHHhhc-----------------CccchhhcCC-----------CccHHHHHh-
Q psy13773         80 ----NFRYAMGKSS---PS----ALRETIVEV-----------------PNITWEDIGG-----------LEGVKRELQ-  119 (299)
Q Consensus        80 ----~~~~~~~~~~---~~----~~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~~-  119 (299)
                          .+...+....   ..    ...+++.++                 ++.+++++.|           .|+..+|.+ 
T Consensus       251 DEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~I  330 (644)
T PRK10733        251 DEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQI  330 (644)
T ss_pred             hhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHH
Confidence                2333332210   01    111233222                 5666666643           688777765 


Q ss_pred             --------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccc
Q psy13773        120 --------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEI  191 (299)
Q Consensus       120 --------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  191 (299)
                              .+..++++..+|..|.||||+|+.++|.+|+..|+++..                              ..|
T Consensus       331 l~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~------------------------------~~i  380 (644)
T PRK10733        331 LKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNK------------------------------RVV  380 (644)
T ss_pred             HHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCC------------------------------Ccc
Confidence                    344678899999999999999999999999999876531                              368


Q ss_pred             cHHHHHHHHHhccC
Q psy13773        192 TRAHFEEAMRFARR  205 (299)
Q Consensus       192 t~~Df~~AL~~~~P  205 (299)
                      +.+||++|+.++.+
T Consensus       381 ~~~d~~~a~~~v~~  394 (644)
T PRK10733        381 SMVEFEKAKDKIMM  394 (644)
T ss_pred             cHHHHHHHHHHHhc
Confidence            99999999987754

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=99.52  E-value=9.6e-14  Score=128.34  Aligned_cols=142  Identities=12%  Similarity=0.081  Sum_probs=106.4

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH----------------
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME----------------   79 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~----------------   79 (299)
                      ++++++.+++|+||||||||+++++||++++..++.+++.+|.++|+|++++.++++|..|...                
T Consensus       143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEID  222 (413)
T PLN00020        143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLD  222 (413)
T ss_pred             cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhh
Confidence            5689999999999999999999999999999999999999999999999999999999998742                


Q ss_pred             HHhhhhcCCCchhhh-----HHHhhc-----------------------------CccchhhcCC---------CccHHH
Q psy13773         80 NFRYAMGKSSPSALR-----ETIVEV-----------------------------PNITWEDIGG---------LEGVKR  116 (299)
Q Consensus        80 ~~~~~~~~~~~~~~~-----~~l~~l-----------------------------~~~l~~~~~r---------~p~~~~  116 (299)
                      +++..+.........     .+++.+                             ++.+++++.|         .|+.++
T Consensus       223 A~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i~lPd~e~  302 (413)
T PLN00020        223 AGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED  302 (413)
T ss_pred             hcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCceeCCCCHHH
Confidence            344444322111111     122110                             5556666654         688899


Q ss_pred             HHhhh---c-----ccCCHHHHHHhcCC----CCHHHHHHHHHHHHHHHHHHH
Q psy13773        117 ELQEL---V-----QDVDLNYIAKVTNG----FSGADLTEICQRACKLAIRQS  157 (299)
Q Consensus       117 R~~~l---~-----~~v~l~~LA~~t~g----lSggDl~~Lv~~A~~~a~~r~  157 (299)
                      |.+.+   +     ...++..|+..+.|    |+|+-..+++.++...-+.+.
T Consensus       303 R~eIL~~~~r~~~l~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~~  355 (413)
T PLN00020        303 RIGVVHGIFRDDGVSREDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAEV  355 (413)
T ss_pred             HHHHHHHHhccCCCCHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHHh
Confidence            88732   1     23455677777755    889999999998877777665

>KOG0739|consensus

Probab=99.50  E-value=5.8e-15  Score=131.59  Aligned_cols=68  Identities=18%  Similarity=0.174  Sum_probs=61.2

Q ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        193 RAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       193 ~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      +.-+..|+-.-+|+|+|+||-||+..|+.+.|+|-+  |.|+|.+|.-.-+--+||||||||||||.-|-
T Consensus       116 r~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVIL--PIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLA  183 (439)
T KOG0739|consen  116 RSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVIL--PIKFPQLFTGKRKPWRGILLYGPPGTGKSYLA  183 (439)
T ss_pred             HHHhhhhhhccCCCCchhhhccchhHHHHHHhheee--cccchhhhcCCCCcceeEEEeCCCCCcHHHHH
Confidence            355666777778999999999999999999999999  99999999977777799999999999998764

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.41  E-value=4.5e-13  Score=114.93  Aligned_cols=158  Identities=14%  Similarity=0.169  Sum_probs=96.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh--cCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC--QANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l--~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      +++.+.+++.+.|+||||||||||+|||...-  ..+.|.+++.++....      .+..+.++.     ....+..+- 
T Consensus        21 i~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~------~~~~~R~~v-----GmVFQ~fnLF   89 (240)
T COG1126          21 ISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKK------DILKLRRKV-----GMVFQQFNLF   89 (240)
T ss_pred             cceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchh------hHHHHHHhc-----Ceeccccccc
Confidence            56788999999999999999999999999854  5677888887664331      222222211     111111111 


Q ss_pred             --hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 --SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        91 --~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                        -+..+.+..-|-....  ....+.++++..+++.|++.+ ...++..+||||.|+++.+.++..-.+           
T Consensus        90 PHlTvleNv~lap~~v~~--~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~-----------  156 (240)
T COG1126          90 PHLTVLENVTLAPVKVKK--LSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPK-----------  156 (240)
T ss_pred             ccchHHHHHHhhhHHHcC--CCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCC-----------
Confidence              1111111111111000  112345667779999999954 557889999999999887665543222           


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P  205 (299)
                                .+..+|+++..+|-...++.+.+++...
T Consensus       157 ----------vmLFDEPTSALDPElv~EVL~vm~~LA~  184 (240)
T COG1126         157 ----------VMLFDEPTSALDPELVGEVLDVMKDLAE  184 (240)
T ss_pred             ----------EEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence                      2446667777776666677776666543

>KOG0737|consensus

Probab=99.40  E-value=5.2e-14  Score=128.88  Aligned_cols=55  Identities=22%  Similarity=0.114  Sum_probs=51.4

Q ss_pred             CCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC--CCCCCCCCcccccCCCCCCCeeeec
Q psy13773        207 VNDADIRKYEMFAQTLQQSRGFGTNFRFPSNP--NQSQSGGPNSAPANESGTGGILLMF  263 (299)
Q Consensus       207 Vsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~--~~~~~k~s~~l~~g~~gtg~~ll~~  263 (299)
                      |+|+|||||+.+++.+++.|-+  |++|||+|  +..++.-.|||||||||||||+|.=
T Consensus        89 v~f~DIggLe~v~~~L~e~Vil--Plr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAK  145 (386)
T KOG0737|consen   89 VSFDDIGGLEEVKDALQELVIL--PLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAK  145 (386)
T ss_pred             eehhhccchHHHHHHHHHHHhh--cccchhhhcccccccCCccceecCCCCchHHHHHH
Confidence            9999999999999999999999  99999999  4557788999999999999999874

>KOG0738|consensus

Probab=99.37  E-value=1.4e-13  Score=126.62  Aligned_cols=67  Identities=18%  Similarity=0.135  Sum_probs=61.7

Q ss_pred             HHHHHHHHhc----cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        194 AHFEEAMRFA----RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       194 ~Df~~AL~~~----~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .|+.++|++-    .|+|+|+||-||+++|+-|.|.|.+  |+.+||.|.-..+-=-|+|+.||||||||||-
T Consensus       192 ~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvl--Pi~mPe~F~GirrPWkgvLm~GPPGTGKTlLA  262 (491)
T KOG0738|consen  192 ADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVL--PIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLA  262 (491)
T ss_pred             HHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhh--hhhhHHHHhhcccccceeeeeCCCCCcHHHHH
Confidence            3777777764    4889999999999999999999999  99999999999999999999999999999984

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.37  E-value=2.2e-12  Score=131.81  Aligned_cols=60  Identities=27%  Similarity=0.443  Sum_probs=49.8

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhh----------cCCeecccchhhh--hccccccHHHHHHHHHHHHH
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELL--TMWFGESEANVRDIFDKVTM   78 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l----------~~~~i~i~~~~l~--~~~~g~~~~~i~~~f~~a~~   78 (299)
                      .....++|+||||||||++++.||..+          +..++.+++..+.  .++.|+.+..++.+|+.+..
T Consensus       201 ~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~  272 (731)
T TIGR02639       201 RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEK  272 (731)
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhc
Confidence            345689999999999999999999987          4567778887776  46788889999999987654

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=99.34  E-value=1.1e-13  Score=131.39  Aligned_cols=57  Identities=18%  Similarity=0.216  Sum_probs=53.4

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773        204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .|.|+|+||||++..|+++.+.|+|  |++||++|.. |+....|+|||||||||||+|.
T Consensus       139 ~p~v~~~digGl~~~k~~l~~~v~~--pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA  196 (398)
T PTZ00454        139 KPDVTYSDIGGLDIQKQEIREAVEL--PLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA  196 (398)
T ss_pred             CCCCCHHHcCCHHHHHHHHHHHHHH--HhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence            6899999999999999999999999  9999999975 7778889999999999999984

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.34  E-value=8.3e-13  Score=115.19  Aligned_cols=158  Identities=15%  Similarity=0.218  Sum_probs=103.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccc-cHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGE-SEANVRDIFDKVTMENFRYAMGKSSP   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~-~~~~i~~~f~~a~~~~~~~~~~~~~~   90 (299)
                      ++|.+.+|+++.|+|+||||||||+|+|++...  .+.|.+++..+..+.-.. ..+.++.+|+        ....+.++
T Consensus        26 VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQ--------Dp~~SLnP   97 (252)
T COG1124          26 VSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQ--------DPYSSLNP   97 (252)
T ss_pred             eeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEec--------CCccccCc
Confidence            678889999999999999999999999999665  466778876665431110 1122233332        22222233


Q ss_pred             hhh-hHHHhhcCccchhhcCCCccHHHHHhhhcccCCH--HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 SAL-RETIVEVPNITWEDIGGLEGVKRELQELVQDVDL--NYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        91 ~~~-~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l--~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                      ... .+.+.+- ...    ...++..+|+..+++.|++  +.+.++++.|||||+|++|...++..-.+.          
T Consensus        98 ~~tv~~~l~Ep-l~~----~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pkl----------  162 (252)
T COG1124          98 RRTVGRILSEP-LRP----HGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKL----------  162 (252)
T ss_pred             chhHHHHHhhh-hcc----CCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCE----------
Confidence            222 2333221 111    3356778888899999999  567788899999999999987665543222          


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P  205 (299)
                                 +..+|+....+...+..+.+-|.+.+.
T Consensus       163 -----------LIlDEptSaLD~siQa~IlnlL~~l~~  189 (252)
T COG1124         163 -----------LILDEPTSALDVSVQAQILNLLLELKK  189 (252)
T ss_pred             -----------EEecCchhhhcHHHHHHHHHHHHHHHH
Confidence                       345566666677777777777777654

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.32  E-value=5.2e-12  Score=109.73  Aligned_cols=163  Identities=13%  Similarity=0.206  Sum_probs=101.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC--C
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS--S   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~--~   89 (299)
                      ++|.|.+++.|.|+|++|+|||||+|+|++...+  +.+.+++.++...    ..+.++++.....   +..+..+.  .
T Consensus        23 Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~----~~k~lr~~r~~iG---mIfQ~~nLv~r   95 (258)
T COG3638          23 VNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKL----KGKELRKLRRDIG---MIFQQFNLVPR   95 (258)
T ss_pred             EeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhcc----chHHHHHHHHhce---eEeccCCcccc
Confidence            6788999999999999999999999999997654  5566777776654    3344444333211   11111111  1


Q ss_pred             chhhhHHHhhc--CccchhhcCCCc--cHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEV--PNITWEDIGGLE--GVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRR  164 (299)
Q Consensus        90 ~~~~~~~l~~l--~~~l~~~~~r~p--~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~  164 (299)
                      ......++...  .+..+..+...+  ..+.++...++.+++.+.| .++..+|||++|++..+.++.--          
T Consensus        96 ~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~----------  165 (258)
T COG3638          96 LSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQ----------  165 (258)
T ss_pred             cHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcC----------
Confidence            11111222111  111222222333  3445566889999996665 77899999999998765433211          


Q ss_pred             HHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        165 EREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                 .+-+..+|+....+|.+....++.|++.-
T Consensus       166 -----------pkiILADEPvasLDp~~a~~Vm~~l~~in  194 (258)
T COG3638         166 -----------PKIILADEPVASLDPESAKKVMDILKDIN  194 (258)
T ss_pred             -----------CCEEecCCcccccChhhHHHHHHHHHHHH
Confidence                       11244667777888899888888888764

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.32  E-value=2e-12  Score=113.41  Aligned_cols=158  Identities=18%  Similarity=0.257  Sum_probs=102.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+..++.+.|+|||||||||++|+|.+.+.  .+.+.+++.++.+...-+..+.+..+.+..   .+.+      .-
T Consensus        20 v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqi---gLFP------h~   90 (309)
T COG1125          20 VNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQI---GLFP------HL   90 (309)
T ss_pred             eeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhc---ccCC------Cc
Confidence            567889999999999999999999999999776  467888988887654333334444333321   1111      11


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH--H-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL--N-YIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l--~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                      ...+.+..+|...-   ......++|+.+++..+++  . ...++++.+|||+.|++-...+++|-...           
T Consensus        91 Tv~eNIa~VP~L~~---w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~i-----------  156 (309)
T COG1125          91 TVAENIATVPKLLG---WDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPI-----------  156 (309)
T ss_pred             cHHHHHHhhhhhcC---CCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCe-----------
Confidence            12233333332220   1134567888899999888  2 45577799999999999888777664322           


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                +..+++....++|++..+.+-+.+++
T Consensus       157 ----------lLMDEPFgALDpI~R~~lQ~e~~~lq  182 (309)
T COG1125         157 ----------LLMDEPFGALDPITRKQLQEEIKELQ  182 (309)
T ss_pred             ----------EeecCCccccChhhHHHHHHHHHHHH
Confidence                      22344555666777766666655554

>KOG0728|consensus

Probab=99.31  E-value=4.2e-13  Score=117.30  Aligned_cols=57  Identities=12%  Similarity=0.070  Sum_probs=52.9

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773        204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .|.-+++-||||+.--++|.+.|++  |.||||||.+ |+..--|+|||||||||||||-
T Consensus       141 vPDStYeMiGgLd~QIkeIkEVIeL--PvKHPELF~aLGIaQPKGvlLygppgtGktLla  198 (404)
T KOG0728|consen  141 VPDSTYEMIGGLDKQIKEIKEVIEL--PVKHPELFEALGIAQPKGVLLYGPPGTGKTLLA  198 (404)
T ss_pred             CCccHHHHhccHHHHHHHHHHHHhc--cccCHHHHHhcCCCCCcceEEecCCCCchhHHH
Confidence            3778899999999999999999999  9999999965 7888899999999999999984

>TIGR03689 pup_AAA proteasome ATPase

Probab=99.30  E-value=2.5e-13  Score=131.98  Aligned_cols=68  Identities=16%  Similarity=0.163  Sum_probs=58.0

Q ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773        193 RAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       193 ~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .++...-+-...|.|+|+|||||+..++.|++.|+|  |++||++|.. |++...|+|||||||||||++-
T Consensus       165 ~~~~~~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~l--p~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LA  233 (512)
T TIGR03689       165 KAEVEDLVLEEVPDVTYADIGGLDSQIEQIRDAVEL--PFLHPELYREYDLKPPKGVLLYGPPGCGKTLIA  233 (512)
T ss_pred             HhHHhcceeecCCCCCHHHcCChHHHHHHHHHHHHH--HhhCHHHHHhccCCCCcceEEECCCCCcHHHHH
Confidence            334434344456889999999999999999999999  9999999975 8888999999999999999753

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.29  E-value=5.3e-12  Score=108.18  Aligned_cols=159  Identities=14%  Similarity=0.274  Sum_probs=97.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC-------Ceecccchhhhhcccc--ccHHHHHHHHHHHHHHHHhhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA-------NFISVKGPELLTMWFG--ESEANVRDIFDKVTMENFRYA   84 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~-------~~i~i~~~~l~~~~~g--~~~~~i~~~f~~a~~~~~~~~   84 (299)
                      +++.++..+...|+||+||||||++|++.+....       +.+.+++.++.+..+.  +..+.+..+|++..       
T Consensus        26 i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPn-------   98 (253)
T COG1117          26 INLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPN-------   98 (253)
T ss_pred             CceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCC-------
Confidence            6778899999999999999999999999985542       5567788888764222  22334444444321       


Q ss_pred             hcCCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         85 MGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        85 ~~~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                         .-+.+..+.+. +.-.+.. +. ....+++++..++...|     +.|.+...++||||.|+||.+.+++.-.+   
T Consensus        99 ---PFp~SIydNVa-yG~r~~g-~~-~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~Pe---  169 (253)
T COG1117          99 ---PFPMSIYDNVA-YGLRLHG-IK-DKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPE---  169 (253)
T ss_pred             ---CCCchHHHHHH-HhHHhhc-cc-hHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCc---
Confidence               11111111110 0000000 00 12344555555554444     45666668999999999998665432111   


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccCC
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARRS  206 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~Ps  206 (299)
                                        -+..+|+.+..+||+...+++-+.+.+..
T Consensus       170 ------------------VlLmDEPtSALDPIsT~kIEeLi~eLk~~  198 (253)
T COG1117         170 ------------------VLLMDEPTSALDPISTLKIEELITELKKK  198 (253)
T ss_pred             ------------------EEEecCcccccCchhHHHHHHHHHHHHhc
Confidence                              24466777888999999999998888754

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.25  E-value=7.2e-12  Score=111.55  Aligned_cols=128  Identities=14%  Similarity=0.172  Sum_probs=81.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.++.++.+.|.||||||||||+|+|++.+.  .+.+.+++.++.+..    .+.      .|+..++.++.......
T Consensus        21 ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~----~ke------lAk~ia~vpQ~~~~~~~   90 (258)
T COG1120          21 LSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLS----PKE------LAKKLAYVPQSPSAPFG   90 (258)
T ss_pred             ceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcC----HHH------HhhhEEEeccCCCCCCC
Confidence            567889999999999999999999999999776  567889988876542    111      22333444544332222


Q ss_pred             hhhHHHh---hcCccchhhcCCCccHHHHHhhhcccCCHHHHHHhc-CCCCHHHHHHHHHHHHHH
Q psy13773         92 ALRETIV---EVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVT-NGFSGADLTEICQRACKL  152 (299)
Q Consensus        92 ~~~~~l~---~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~t-~glSggDl~~Lv~~A~~~  152 (299)
                      .....+.   ..|+.-+-. ....+..+.++..++.+++..++.+. ..+|||++|++..+.++.
T Consensus        91 ~tV~d~V~~GR~p~~~~~~-~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALa  154 (258)
T COG1120          91 LTVYELVLLGRYPHLGLFG-RPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALA  154 (258)
T ss_pred             cEEeehHhhcCCccccccc-CCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHh
Confidence            1111111   112211110 01122233566888999999998776 789999999988765443

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.23  E-value=1.3e-11  Score=107.83  Aligned_cols=160  Identities=18%  Similarity=0.255  Sum_probs=97.6

Q ss_pred             hhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773         13 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP   90 (299)
Q Consensus        13 ~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~   90 (299)
                      .++|.+.+++.+.|+||||||||||+++|++...  .+.+.+++.++...    .+..... |+.... .|..+....-+
T Consensus        23 ~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l----~~~~~~~-~R~~~i-GfvFQ~~nLl~   96 (226)
T COG1136          23 DVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKL----SEKELAK-LRRKKI-GFVFQNFNLLP   96 (226)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcC----CHHHHHH-HHHHhE-EEECccCCCCC
Confidence            4788899999999999999999999999999665  45677887776544    2222222 221111 22222222222


Q ss_pred             hhhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCHH-HHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDLN-YIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRRER  166 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l~-~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~  166 (299)
                      .........+|..+    ...+  ...++...+++.+++. ... +.+..+||||.|+++.+.++..-..          
T Consensus        97 ~ltv~ENv~lpl~~----~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~----------  162 (226)
T COG1136          97 DLTVLENVELPLLI----AGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPK----------  162 (226)
T ss_pred             CCCHHHHHHhHHHH----cCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCC----------
Confidence            22111112222211    1122  4567777889999996 555 5578999999999887654443211          


Q ss_pred             HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                 -+..+|+..+.+.-+.+.+.+.+.+.
T Consensus       163 -----------iilADEPTgnLD~~t~~~V~~ll~~~  188 (226)
T COG1136         163 -----------IILADEPTGNLDSKTAKEVLELLREL  188 (226)
T ss_pred             -----------eEEeeCccccCChHHHHHHHHHHHHH
Confidence                       24455666676766777776666655

>KOG0727|consensus

Probab=99.22  E-value=1.1e-12  Score=114.96  Aligned_cols=58  Identities=17%  Similarity=0.180  Sum_probs=53.8

Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773        203 ARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       203 ~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      -+|.|++.|||||+--|+++++++++  ||.|-+||.+ |+.---|+|+|||||||||.|-
T Consensus       148 ekpdvsy~diggld~qkqeireavel--plt~~~ly~qigidpprgvllygppg~gktml~  206 (408)
T KOG0727|consen  148 EKPDVSYADIGGLDVQKQEIREAVEL--PLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLA  206 (408)
T ss_pred             CCCCccccccccchhhHHHHHHHHhc--cchHHHHHHHhCCCCCcceEEeCCCCCcHHHHH
Confidence            36889999999999999999999999  9999999976 7777889999999999999875

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.22  E-value=1.4e-11  Score=114.38  Aligned_cols=127  Identities=20%  Similarity=0.252  Sum_probs=85.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.+.|.|||||||||++|+||+...  .+.|.+++.++....+  ..+.+..+|+.   +++.+....    
T Consensus        24 isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp--~kR~ig~VFQ~---YALFPHltV----   94 (352)
T COG3842          24 ISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP--EKRPIGMVFQS---YALFPHMTV----   94 (352)
T ss_pred             ceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh--hhcccceeecC---cccCCCCcH----
Confidence            578889999999999999999999999999654  5778889988876322  34456666653   122221110    


Q ss_pred             hhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIR  155 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~  155 (299)
                        .+. ..+.  +. .....+  +.++|+.++++.+.+..++ ++++.+|||+.|+++.+.++..-.
T Consensus        95 --~~N-VafG--Lk-~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P  155 (352)
T COG3842          95 --EEN-VAFG--LK-VRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEP  155 (352)
T ss_pred             --HHH-hhhh--hh-hcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCc
Confidence              010 1111  11 001122  3567999999999997776 556899999999998877665443

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=99.21  E-value=1.7e-12  Score=123.37  Aligned_cols=57  Identities=18%  Similarity=0.158  Sum_probs=52.5

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773        204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .|+|+|+||||+++.++++.+.|++  |++||++|.+ |+....|+|||||||||||+|.
T Consensus       125 ~p~~~~~di~Gl~~~~~~l~~~i~~--pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA  182 (389)
T PRK03992        125 SPNVTYEDIGGLEEQIREVREAVEL--PLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA  182 (389)
T ss_pred             CCCCCHHHhCCcHHHHHHHHHHHHH--HhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence            4789999999999999999999999  9999999864 6778889999999999999973

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.20  E-value=1.7e-11  Score=107.62  Aligned_cols=152  Identities=15%  Similarity=0.183  Sum_probs=93.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.+.|+||||||||||+|.||+...+  +.+.+++..+...  +   ..+..+|+....   .+       -
T Consensus        22 i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p--~---~~~~~vFQ~~~L---lP-------W   86 (248)
T COG1116          22 INLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP--G---PDIGYVFQEDAL---LP-------W   86 (248)
T ss_pred             ceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC--C---CCEEEEeccCcc---cc-------h
Confidence            5678899999999999999999999999997765  4566776655221  1   112222322110   00       0


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLA  170 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~  170 (299)
                        +..+..+.-.+........+..+|+..+++.|++... .+++..+|||+.|++....++..-.+              
T Consensus        87 --~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~--------------  150 (248)
T COG1116          87 --LTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPK--------------  150 (248)
T ss_pred             --hhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCC--------------
Confidence              0001111000110001123445688899999999555 57778999999999887665543222              


Q ss_pred             CCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        171 GNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                             .+..+|+....+.+|.+.+.+-+.++
T Consensus       151 -------lLLlDEPFgALDalTR~~lq~~l~~l  176 (248)
T COG1116         151 -------LLLLDEPFGALDALTREELQDELLRL  176 (248)
T ss_pred             -------EEEEcCCcchhhHHHHHHHHHHHHHH
Confidence                   23355666777888888888777665

>KOG0726|consensus

Probab=99.20  E-value=2.6e-12  Score=114.57  Aligned_cols=57  Identities=23%  Similarity=0.183  Sum_probs=52.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeeec
Q psy13773        205 RSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLMF  263 (299)
Q Consensus       205 PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~~  263 (299)
                      |.-++.|||||+.--|+|.+++++  ||-|||+|.. |++---|+.|||+||||||||-=
T Consensus       180 P~Ety~diGGle~QiQEiKEsvEL--PLthPE~YeemGikpPKGVIlyG~PGTGKTLLAK  237 (440)
T KOG0726|consen  180 PQETYADIGGLESQIQEIKESVEL--PLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAK  237 (440)
T ss_pred             chhhhcccccHHHHHHHHHHhhcC--CCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHH
Confidence            778899999999999999999999  9999999864 77777899999999999999964

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=99.20  E-value=2.7e-12  Score=123.00  Aligned_cols=57  Identities=19%  Similarity=0.153  Sum_probs=52.9

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773        204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .|.++|+||||+++.+++|.+.+++  |+.||++|.+ |+....|+|||||||||||+|.
T Consensus       177 ~p~~~~~DIgGl~~qi~~l~e~v~l--pl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LA  234 (438)
T PTZ00361        177 APLESYADIGGLEQQIQEIKEAVEL--PLTHPELYDDIGIKPPKGVILYGPPGTGKTLLA  234 (438)
T ss_pred             CCCCCHHHhcCHHHHHHHHHHHHHh--hhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence            4789999999999999999999999  9999999875 6778889999999999999985

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.20  E-value=1e-11  Score=114.66  Aligned_cols=125  Identities=15%  Similarity=0.242  Sum_probs=81.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      +++.+..++.+.|.|||||||||++|+||+...  .+.+.|++.++....+  .++.+..+|+.-   ++.+..      
T Consensus        22 i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P--~~R~iamVFQ~y---ALyPhm------   90 (338)
T COG3839          22 VNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPP--EKRGIAMVFQNY---ALYPHM------   90 (338)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh--hHCCEEEEeCCc---cccCCC------
Confidence            567889999999999999999999999999765  5678888887765322  234455555421   111110      


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-HHHHhcCCCCHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-YIAKVTNGFSGADLTEICQRACKL  152 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~LA~~t~glSggDl~~Lv~~A~~~  152 (299)
                      +..+.   +...+...-....+.++|++++.+.++++ .+.+++..+|||+.|+++...++.
T Consensus        91 tV~~N---iaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlV  149 (338)
T COG3839          91 TVYEN---IAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALV  149 (338)
T ss_pred             cHHHH---hhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHh
Confidence            00111   11111110011245678899999999995 556778999999999988765443

>KOG0729|consensus

Probab=99.18  E-value=4.9e-12  Score=111.61  Aligned_cols=57  Identities=14%  Similarity=0.115  Sum_probs=52.6

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773        204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      +|.|+++||||-.+--.++++.+++  ||.|||.|-. |+.---|||+||||||||||+-
T Consensus       171 kpdvty~dvggckeqieklrevve~--pll~perfv~lgidppkgvllygppgtgktl~a  228 (435)
T KOG0729|consen  171 KPDVTYSDVGGCKEQIEKLREVVEL--PLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCA  228 (435)
T ss_pred             CCCcccccccchHHHHHHHHHHHhc--cccCHHHHhhcCCCCCCceEEeCCCCCchhHHH
Confidence            6889999999999999999999999  9999998865 6777789999999999999974

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.18  E-value=3.1e-11  Score=108.66  Aligned_cols=159  Identities=17%  Similarity=0.153  Sum_probs=101.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.|+.|+.+.++|.||+|||||+|++...-.  .+.+.+++.++...    ....++...+...     .-.+...- 
T Consensus        25 vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l----~~~~Lr~~R~~IG-----MIFQhFnLL   95 (339)
T COG1135          25 VSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTAL----SEAELRQLRQKIG-----MIFQHFNLL   95 (339)
T ss_pred             ceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccC----ChHHHHHHHhhcc-----EEecccccc
Confidence            688899999999999999999999999998544  56788898777654    3444544433221     11111111 


Q ss_pred             -hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 -SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        91 -~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                       +........+|-.+..  ....+.++|+.++++.|++.+-+ .++..+||||.|++..+.+++.-.+.           
T Consensus        96 ssrTV~~NvA~PLeiag--~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~i-----------  162 (339)
T COG1135          96 SSRTVFENVAFPLELAG--VPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKI-----------  162 (339)
T ss_pred             ccchHHhhhhhhHhhcC--CCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCE-----------
Confidence             1111111222322222  22346678999999999996655 56689999999999887666543322           


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                +..+|..+..+|=|.+.+.+-|+++.
T Consensus       163 ----------LL~DEaTSALDP~TT~sIL~LL~~In  188 (339)
T COG1135         163 ----------LLCDEATSALDPETTQSILELLKDIN  188 (339)
T ss_pred             ----------EEecCccccCChHHHHHHHHHHHHHH
Confidence                      22445555666666666666666654

>KOG0652|consensus

Probab=99.16  E-value=7e-12  Score=110.33  Aligned_cols=58  Identities=14%  Similarity=0.095  Sum_probs=52.7

Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773        203 ARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       203 ~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .+|+-.++|||||+.--+++-+.|.+  |+.|||-|.+ |++---|+|+||||||||||+-
T Consensus       164 ekPtE~YsDiGGldkQIqELvEAiVL--pmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmA  222 (424)
T KOG0652|consen  164 EKPTEQYSDIGGLDKQIQELVEAIVL--PMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMA  222 (424)
T ss_pred             cCCcccccccccHHHHHHHHHHHhcc--ccccHHHHHhcCCCCCCceEeeCCCCCcHHHHH
Confidence            36889999999999999999999999  9999999976 5666779999999999999974

>KOG0744|consensus

Probab=99.16  E-value=1.7e-10  Score=104.27  Aligned_cols=61  Identities=36%  Similarity=0.615  Sum_probs=53.9

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhc---------CCeecccchhhhhccccccHHHHHHHHHHHHHH
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQ---------ANFISVKGPELLTMWFGESEANVRDIFDKVTME   79 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~---------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~   79 (299)
                      .-.+.+||+||||+|||+|+|+||..+.         ...++|+++.+.++|++++.+.+.++|++....
T Consensus       175 t~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~EL  244 (423)
T KOG0744|consen  175 TWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQEL  244 (423)
T ss_pred             eeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            4567899999999999999999999875         256889999999999999999999999987643

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.15  E-value=1.8e-11  Score=118.52  Aligned_cols=163  Identities=16%  Similarity=0.246  Sum_probs=103.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+|+.+.|+|+||||||||+|+|++...+  +.+.+++.+ .....++    .+...... ...|+.+....++.
T Consensus       310 VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~-~~~~~~~----~~~~r~~~-QmvFQdp~~SLnPr  383 (539)
T COG1123         310 VSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-LDLTGGE----LRRLRRRI-QMVFQDPYSSLNPR  383 (539)
T ss_pred             eeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc-cccccch----hhhhhhhe-EEEEeCcccccCcc
Confidence            6788999999999999999999999999997764  567777766 3322111    11111111 01233333333333


Q ss_pred             hhh-HHHhhcCccchhhcCCCccHHHHHhhhcccCCH--HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALR-ETIVEVPNITWEDIGGLEGVKRELQELVQDVDL--NYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        92 ~~~-~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l--~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                      ... ..+.+ +..+... ......++|+..+++.+++  ..+.++++.|||||.|+++.+.++..-.+.           
T Consensus       384 ~tV~~~i~e-pL~~~~~-~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~l-----------  450 (539)
T COG1123         384 MTVGDILAE-PLRIHGG-GSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKL-----------  450 (539)
T ss_pred             ccHHHHHHh-HHhhhcc-cchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCE-----------
Confidence            222 22222 1111110 1124455678888999998  357788999999999999987666543332           


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P  205 (299)
                                +..+|+....++.+...+.+-|++.+.
T Consensus       451 ----------li~DEp~SaLDvsvqa~VlnLl~~lq~  477 (539)
T COG1123         451 ----------LILDEPVSALDVSVQAQVLNLLKDLQE  477 (539)
T ss_pred             ----------EEecCCccccCHHHHHHHHHHHHHHHH
Confidence                      345667777788888888888888764

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.07  E-value=1.7e-10  Score=97.25  Aligned_cols=157  Identities=17%  Similarity=0.200  Sum_probs=95.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhhccccc---cHHHHHHHHHHHHHHHHhhhhcCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGE---SEANVRDIFDKVTMENFRYAMGKS   88 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~---~~~~i~~~f~~a~~~~~~~~~~~~   88 (299)
                      ++|.+.+++.+.|.||||+|||||+|.|..+..+  +.+.+++.++....-.+   ..+.+..+|+.-+   +...+   
T Consensus        21 vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~r---LL~~~---   94 (223)
T COG2884          21 VSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFR---LLPDR---   94 (223)
T ss_pred             ceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeecc---ccccc---
Confidence            6788899999999999999999999999997764  66778888776531111   1222222333211   01100   


Q ss_pred             CchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         89 SPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        89 ~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                          .......++..+-.  ....+.++|+.++++.|++..- ...+..+|||++|+++.+.+..-              
T Consensus        95 ----tvyeNVA~pL~v~G--~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~--------------  154 (223)
T COG2884          95 ----TVYENVALPLRVIG--KPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVN--------------  154 (223)
T ss_pred             ----hHhhhhhhhhhccC--CCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHcc--------------
Confidence                00000111111100  1234667889999999999554 46668999999999886543321              


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                          .|.   .+..+|+..+.++-+..++..-++++
T Consensus       155 ----~P~---vLlADEPTGNLDp~~s~~im~lfeei  183 (223)
T COG2884         155 ----QPA---VLLADEPTGNLDPDLSWEIMRLFEEI  183 (223)
T ss_pred             ----CCC---eEeecCCCCCCChHHHHHHHHHHHHH
Confidence                111   24456666777766666666666665

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=99.05  E-value=2.6e-11  Score=114.36  Aligned_cols=57  Identities=19%  Similarity=0.214  Sum_probs=51.6

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773        204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .|.|+|+||+|+++.++++.+.+.+  |++||++|.. |+....|+|+|||||||||+|.
T Consensus       116 ~p~~~~~di~Gl~~~~~~l~~~i~~--~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~la  173 (364)
T TIGR01242       116 RPNVSYEDIGGLEEQIREIREAVEL--PLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLA  173 (364)
T ss_pred             CCCCCHHHhCChHHHHHHHHHHHHH--HhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence            4889999999999999999999999  9999998864 5566778999999999999886

Many proteins may score above the trusted cutoff because an internal

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.05  E-value=8.7e-11  Score=106.63  Aligned_cols=181  Identities=19%  Similarity=0.216  Sum_probs=112.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-C------CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-A------NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-~------~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.+.|+|.||||||+++++|.+.+. .      +.+.+++.++.+.    +++.+++++.......|+....
T Consensus        24 vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l----~~~~~~~iRG~~I~mIfQ~p~~   99 (316)
T COG0444          24 VSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSL----SEKELRKIRGKEIAMIFQDPMT   99 (316)
T ss_pred             eeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccC----CHHHHHhhcCceEEEEEcCchh
Confidence            678899999999999999999999999999886 2      3455677776554    3333333332221112333333


Q ss_pred             CCCchhhh-HHHhhcCccchhhcCCCccHHHHHhhhcccCCHH----HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALR-ETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN----YIAKVTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        87 ~~~~~~~~-~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~----~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      ..++.... ..+.+....-.. ..+..+..+|+..+++.|++.    .+..+++.||||++|+++.+.++.+-.+     
T Consensus       100 sLnPv~~Ig~Qi~E~l~~h~~-~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~-----  173 (316)
T COG0444         100 SLNPVMTIGDQIAEVLRLHGK-GLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPK-----  173 (316)
T ss_pred             hcCChhhHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCC-----
Confidence            33332211 222221110000 001123466778899999983    5678889999999999998776654222     


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccCC------CCHHHHHHHHHHHH
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARRS------VNDADIRKYEMFAQ  220 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~Ps------Vsw~DIggL~~vk~  220 (299)
                                      .+..+|++...++.++..+.+-|++.+..      .==+|+|-..++.+
T Consensus       174 ----------------LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aD  222 (316)
T COG0444         174 ----------------LLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIAD  222 (316)
T ss_pred             ----------------EEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcc
Confidence                            24566777778888888888888887642      11156665555554

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.04  E-value=1.3e-09  Score=111.07  Aligned_cols=59  Identities=24%  Similarity=0.387  Sum_probs=41.7

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhh----------cCCeecccchhhh--hccccccHHHHHHHHHHHH
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELL--TMWFGESEANVRDIFDKVT   77 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l----------~~~~i~i~~~~l~--~~~~g~~~~~i~~~f~~a~   77 (299)
                      .....++|+||||||||++++.++..+          +..++.++...+.  ..+.|+.+..++.+|..+.
T Consensus       205 ~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~  275 (758)
T PRK11034        205 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLE  275 (758)
T ss_pred             cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHH
Confidence            345678999999999999999999864          1233344444443  3566777888888887654

>CHL00195 ycf46 Ycf46; Provisional

Probab=99.04  E-value=2.2e-10  Score=111.40  Aligned_cols=99  Identities=14%  Similarity=0.104  Sum_probs=64.8

Q ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHH-------
Q psy13773        125 VDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFE-------  197 (299)
Q Consensus       125 v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~-------  197 (299)
                      -+++.+++.+.|+|-.++++++..+..    +..                               .++.+++.       
T Consensus       165 ~~~~~l~~~~~gls~~~~~~~~~~~~~----~~~-------------------------------~~~~~~~~~i~~~k~  209 (489)
T CHL00195        165 ELLENLTRACQGLSLERIRRVLSKIIA----TYK-------------------------------TIDENSIPLILEEKK  209 (489)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHH----HcC-------------------------------CCChhhHHHHHHHHH
Confidence            345788999999999999998876421    100                               11112111       


Q ss_pred             HH------HHhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        198 EA------MRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       198 ~A------L~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      +.      ++-..+.++|+||||++.+|+.+.+....  -.+...  .-|++..-|||||||||||||++-
T Consensus       210 q~~~~~~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~--~~~~~~--~~gl~~pkGILL~GPpGTGKTllA  276 (489)
T CHL00195        210 QIISQTEILEFYSVNEKISDIGGLDNLKDWLKKRSTS--FSKQAS--NYGLPTPRGLLLVGIQGTGKSLTA  276 (489)
T ss_pred             HHHhhhccccccCCCCCHHHhcCHHHHHHHHHHHHHH--hhHHHH--hcCCCCCceEEEECCCCCcHHHHH
Confidence            11      12223679999999999999998875332  111111  235667789999999999999863

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.04  E-value=1.8e-10  Score=107.69  Aligned_cols=160  Identities=13%  Similarity=0.152  Sum_probs=95.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.+.|+||||||||||+|+|++...+  +.+.+++.++...    ....++.+..   ...+.++...... 
T Consensus        24 vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~----~~~~l~~~r~---~Ig~v~Q~~~l~~~   96 (343)
T TIGR02314        24 VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTL----SNSELTKARR---QIGMIFQHFNLLSS   96 (343)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcC----CHHHHHHHhc---CEEEEECCcccccc
Confidence            4677899999999999999999999999997764  6677777665432    1111211111   0011111111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+. ++.....  ....+..+|+..+++.+++... ..+...||||++|++....++..-.+             
T Consensus        97 ~tv~eni~-~~~~~~~--~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~-------------  160 (343)
T TIGR02314        97 RTVFGNVA-LPLELDN--TPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK-------------  160 (343)
T ss_pred             CcHHHHHH-HHHHHcC--CCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCC-------------
Confidence            11112111 1110000  0112345677788888998554 45668899999999987765554221             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                              -+..+|+....++-+.+.+.+.|++..
T Consensus       161 --------iLLlDEPts~LD~~t~~~i~~lL~~l~  187 (343)
T TIGR02314       161 --------VLLCDEATSALDPATTQSILELLKEIN  187 (343)
T ss_pred             --------EEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence                    244566677777888888888777763

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.02  E-value=7.1e-10  Score=100.20  Aligned_cols=131  Identities=18%  Similarity=0.130  Sum_probs=85.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      .+|.+..++.+.|.|-||||||||+|+|.+...  .+.+.+++.++...    ..+.++++..+.....|+.    ..--
T Consensus        47 ~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~----~~~~Lr~~Rr~~~sMVFQ~----FaLl  118 (386)
T COG4175          47 ASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKL----SAAELRELRRKKISMVFQS----FALL  118 (386)
T ss_pred             ceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcC----CHHHHHHHHhhhhhhhhhh----hccc
Confidence            578889999999999999999999999999765  56788898888765    4455555444332222211    1111


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKL  152 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~  152 (299)
                      ..+.++......+.-.-....++++|..+.++.++++..+ ++++.+|||..|++-.+.++.
T Consensus       119 PhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla  180 (386)
T COG4175         119 PHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALA  180 (386)
T ss_pred             cchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHc
Confidence            1112222221111110011235566778999999997765 667899999999998766554

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.01  E-value=6.4e-10  Score=98.75  Aligned_cols=158  Identities=12%  Similarity=0.116  Sum_probs=95.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC--
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS--   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~--   89 (299)
                      ++|.+.+++.+.|+||||+|||||+|+|.+.+.+  +.+.+.+..........   .+          ...++....+  
T Consensus        23 i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~---~I----------gYVPQ~~~~d~~   89 (254)
T COG1121          23 ISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRL---RI----------GYVPQKSSVDRS   89 (254)
T ss_pred             cEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCC---eE----------EEcCcccccCCC
Confidence            5677899999999999999999999999997765  44555544321110000   00          1112211111  


Q ss_pred             -chhhhHHHhhcCccchhhcCC-CccHHHHHhhhcccCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 -PSALRETIVEVPNITWEDIGG-LEGVKRELQELVQDVDLNYIAKVT-NGFSGADLTEICQRACKLAIRQSIETEIRRER  166 (299)
Q Consensus        90 -~~~~~~~l~~l~~~l~~~~~r-~p~~~~R~~~l~~~v~l~~LA~~t-~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~  166 (299)
                       +....+++..-...-...+.+ ....+++++.+++.+++..++++. ..+||||+|++..+.++..-.           
T Consensus        90 fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p-----------  158 (254)
T COG1121          90 FPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNP-----------  158 (254)
T ss_pred             CCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCC-----------
Confidence             111122221110000011111 123356777999999998887655 779999999998765443211           


Q ss_pred             HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773        167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P  205 (299)
                                ..+..+|+...+++-+..+|.+-|++.+.
T Consensus       159 ----------~lllLDEP~~gvD~~~~~~i~~lL~~l~~  187 (254)
T COG1121         159 ----------DLLLLDEPFTGVDVAGQKEIYDLLKELRQ  187 (254)
T ss_pred             ----------CEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence                      12446677777788888889888888765

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.01  E-value=7.9e-10  Score=91.67  Aligned_cols=119  Identities=16%  Similarity=0.253  Sum_probs=74.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+|+.++|.||+|||||||+|++|....+  +.+.+.+.++....+..-...+          +.|.+....-..
T Consensus        22 isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~V----------sY~~Q~paLfg~   91 (223)
T COG4619          22 ISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQV----------SYCAQTPALFGD   91 (223)
T ss_pred             eeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHH----------HHHHcCcccccc
Confidence            6788899999999999999999999999997764  5666777766543221111111          223333222111


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH--HHHHHhcCCCCHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL--NYIAKVTNGFSGADLTEICQ  147 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l--~~LA~~t~glSggDl~~Lv~  147 (299)
                      ..... -.+||.+..   +.|+ ..++..++.++++  ..|.+....+|||+.|++..
T Consensus        92 tVeDN-lifP~~~r~---rr~d-r~aa~~llar~~l~~~~L~k~it~lSGGE~QriAl  144 (223)
T COG4619          92 TVEDN-LIFPWQIRN---RRPD-RAAALDLLARFALPDSILTKNITELSGGEKQRIAL  144 (223)
T ss_pred             chhhc-cccchHHhc---cCCC-hHHHHHHHHHcCCchhhhcchhhhccchHHHHHHH
Confidence            11111 123443322   3343 3455677778887  45778889999999998654

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.00  E-value=2.5e-10  Score=107.46  Aligned_cols=159  Identities=13%  Similarity=0.183  Sum_probs=95.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.++|+||||||||||+++|++...+  +.+.+++.++...    ....++.+...  ...+.++....-+.
T Consensus        12 vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~----~~~~~~~~rr~--~i~~v~Q~~~l~~~   85 (363)
T TIGR01186        12 ADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQ----SPVELREVRRK--KIGMVFQQFALFPH   85 (363)
T ss_pred             eEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcC----CHHHHHHHHhC--cEEEEECCCcCCCC
Confidence            5778899999999999999999999999998764  5677887766532    11222111110  00112211111111


Q ss_pred             -hhhHHHhhcCccchhhcC-CCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 -ALRETIVEVPNITWEDIG-GLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        92 -~~~~~l~~l~~~l~~~~~-r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                       ...+.+.....    ... ......+|+..+++.+++.. +.+....||||++|+++...++..-.+            
T Consensus        86 ~TV~eNi~~~~~----~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~------------  149 (363)
T TIGR01186        86 MTILQNTSLGPE----LLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPD------------  149 (363)
T ss_pred             CCHHHHHHHHHH----HcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC------------
Confidence             11122211000    001 11234567778888899955 456668899999999987765544221            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                               -+..+|+....++.+.+.+.+.+.+.
T Consensus       150 ---------iLLlDEP~saLD~~~r~~l~~~l~~l  175 (363)
T TIGR01186       150 ---------ILLMDEAFSALDPLIRDSMQDELKKL  175 (363)
T ss_pred             ---------EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence                     23455666777788888888777665

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.99  E-value=3.5e-11  Score=106.48  Aligned_cols=160  Identities=14%  Similarity=0.140  Sum_probs=97.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhh-ccccccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLT-MWFGESEANVRDIFDKVTMENFRYAMGKSSP   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~-~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~   90 (299)
                      +++.+.+++.++|+|+||||||||++.+++.+.+  +.+.+++.++.. ....+..+.+..+|+.+..        ..-.
T Consensus        23 v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~--------q~~~   94 (235)
T COG1122          23 VSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDD--------QLFG   94 (235)
T ss_pred             eEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECccc--------cccc
Confidence            5778899999999999999999999999998875  456666655432 1000011111112221111        1001


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+.--+..+   -....+..+|+...+..+++..+. +.+..+|||+.|+++.+.++..-.+             
T Consensus        95 ~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~-------------  158 (235)
T COG1122          95 PTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPE-------------  158 (235)
T ss_pred             CcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCC-------------
Confidence            11111111001000   011224678888999999996665 5558999999999998776554222             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P  205 (299)
                              -+..+|+....++-..+++.+-+++.+.
T Consensus       159 --------iliLDEPta~LD~~~~~~l~~~l~~L~~  186 (235)
T COG1122         159 --------ILLLDEPTAGLDPKGRRELLELLKKLKE  186 (235)
T ss_pred             --------EEEEcCCCCCCCHHHHHHHHHHHHHHHh
Confidence                    2446677777788888888888888753

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.98  E-value=1.3e-09  Score=95.21  Aligned_cols=162  Identities=15%  Similarity=0.158  Sum_probs=99.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.+.+.||||||||||+|+|.+.+.+  +.+.+++.++...    ++....+++++   ..++.+....-++
T Consensus        27 v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~l----s~~~~~~ir~r---~GvlFQ~gALFss   99 (263)
T COG1127          27 VDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQL----SEEELYEIRKR---MGVLFQQGALFSS   99 (263)
T ss_pred             ceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhcc----CHHHHHHHHhh---eeEEeeccccccc
Confidence            5678899999999999999999999999998864  6688888887654    23222222221   1111111111111


Q ss_pred             hhhHHHhhcCccchhhcCCCccH--HHHHhhhcccCCHH-H-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGV--KRELQELVQDVDLN-Y-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~--~~R~~~l~~~v~l~-~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                      ........+|.  .+ -.++|..  ++.+..-++.|++. . ..+++..+|||..+++..+.++..-             
T Consensus       100 ltV~eNVafpl--re-~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAiald-------------  163 (263)
T COG1127         100 LTVFENVAFPL--RE-HTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALD-------------  163 (263)
T ss_pred             cchhHhhheeh--Hh-hccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcC-------------
Confidence            11000011110  00 0123333  33444667788883 3 4577789999999997655443321             


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhccCC
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARRS  206 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~Ps  206 (299)
                           |   .-+..+|+..-.+||+...|.+-+.+.+.+
T Consensus       164 -----P---ell~~DEPtsGLDPI~a~~~~~LI~~L~~~  194 (263)
T COG1127         164 -----P---ELLFLDEPTSGLDPISAGVIDELIRELNDA  194 (263)
T ss_pred             -----C---CEEEecCCCCCCCcchHHHHHHHHHHHHHh
Confidence                 1   135577788888999999999999888753

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=98.98  E-value=5.5e-10  Score=97.57  Aligned_cols=160  Identities=11%  Similarity=0.114  Sum_probs=93.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.||||||||||+++|++...+  +.+.+++.++...    .......+.+   ...+.++...... 
T Consensus        22 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----~~~~~~~~~~---~i~~~~q~~~~~~~   94 (216)
T TIGR00960        22 LNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRL----RGREIPFLRR---HIGMVFQDHRLLSD   94 (216)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhc----ChhHHHHHHH---hceEEecCcccccc
Confidence            5677899999999999999999999999997754  5566666554321    0011111111   0011111111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+.. ......  .......+++..+++.+++... ......||+|++|+++...++..-.+             
T Consensus        95 ~tv~e~l~~-~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~-------------  158 (216)
T TIGR00960        95 RTVYDNVAF-PLRIIG--VPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPP-------------  158 (216)
T ss_pred             ccHHHHHHH-HHHhcC--CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence            111122110 000000  0011234567778888888654 45568899999999987665543221             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                              .+..+|+....++.+.+.|.+.|.+.+
T Consensus       159 --------llllDEPt~~LD~~~~~~l~~~l~~~~  185 (216)
T TIGR00960       159 --------LLLADEPTGNLDPELSRDIMRLFEEFN  185 (216)
T ss_pred             --------EEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence                    244667777888888888988888763

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=98.97  E-value=2.9e-10  Score=106.87  Aligned_cols=155  Identities=12%  Similarity=0.182  Sum_probs=92.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.+.|.||||||||||+|+||+...+  +.+.+++.++.....  ..+.+..+|+.          ....+ 
T Consensus        23 vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~v~Q~----------~~lfp~   90 (356)
T PRK11650         23 IDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEP--ADRDIAMVFQN----------YALYPH   90 (356)
T ss_pred             eeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEeCC----------ccccCC
Confidence            5678899999999999999999999999997654  567777776643210  01111111211          11111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+.. ......  ....+..+|+..+++.+++..+. +....||||++|+++...++..-.+             
T Consensus        91 ~tv~eNi~~-~~~~~~--~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~-------------  154 (356)
T PRK11650         91 MSVRENMAY-GLKIRG--MPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPA-------------  154 (356)
T ss_pred             CCHHHHHHh-HHhhcC--CCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence            111111110 000000  01123456777888888996654 5568899999999987765543221             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                              .+..+|+....++-+.+.+.+.|++++
T Consensus       155 --------llLLDEP~s~LD~~~r~~l~~~l~~l~  181 (356)
T PRK11650        155 --------VFLFDEPLSNLDAKLRVQMRLEIQRLH  181 (356)
T ss_pred             --------EEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence                    244556666667777777777776653

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=98.96  E-value=2.4e-09  Score=89.93  Aligned_cols=121  Identities=15%  Similarity=0.169  Sum_probs=80.2

Q ss_pred             cCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCchh
Q psy13773         15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSA   92 (299)
Q Consensus        15 sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~~   92 (299)
                      ++.+..++.+.|.||+|+|||||++.||+-..  .+.+.|++.+.....+  .++-+..+|++.....            
T Consensus        19 dl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P--~~RPVSmlFQEnNLFa------------   84 (231)
T COG3840          19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP--AERPVSMLFQENNLFA------------   84 (231)
T ss_pred             EEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc--ccCChhhhhhccccch------------
Confidence            56678999999999999999999999999654  5667788887765433  3445666776422110            


Q ss_pred             hhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-HHHHHhcCCCCHHHHHHHHHHH
Q psy13773         93 LRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-NYIAKVTNGFSGADLTEICQRA  149 (299)
Q Consensus        93 ~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-~~LA~~t~glSggDl~~Lv~~A  149 (299)
                      -..+-..+--.+.+.+.-....+++++.++..+++ ..+.+.+..+|||+.|+++.+.
T Consensus        85 HLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALAR  142 (231)
T COG3840          85 HLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALAR  142 (231)
T ss_pred             hhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHH
Confidence            00111112122223222223456677788999999 4566777899999999987554

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=98.95  E-value=6.5e-10  Score=97.17  Aligned_cols=161  Identities=14%  Similarity=0.155  Sum_probs=92.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.||||||||||+++|++.+.+  +.+.+++.++....    .........  ....+.++...... 
T Consensus        23 ~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~----~~~~~~~~~--~~i~~~~q~~~~~~~   96 (218)
T cd03255          23 VSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLS----EKELAAFRR--RHIGFVFQSFNLLPD   96 (218)
T ss_pred             eEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcc----hhHHHHHHh--hcEEEEeeccccCCC
Confidence            4677899999999999999999999999998754  55666665443210    000000000  00011111111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+... .....  .......+++..+++.+++.. +.+....||+|++|++....++..-.+             
T Consensus        97 ~tv~e~l~~~-~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~-------------  160 (218)
T cd03255          97 LTALENVELP-LLLAG--VPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK-------------  160 (218)
T ss_pred             CcHHHHHHHH-HhhcC--CCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCC-------------
Confidence            1111221110 00000  001123456667788888854 455668899999999987655443211             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                              -+..+|+....++.+.+.|.+.|++..
T Consensus       161 --------lllLDEP~~~LD~~~~~~l~~~l~~~~  187 (218)
T cd03255         161 --------IILADEPTGNLDSETGKEVMELLRELN  187 (218)
T ss_pred             --------EEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence                    244667777888888899999888763

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=98.94  E-value=4.4e-10  Score=104.52  Aligned_cols=162  Identities=14%  Similarity=0.201  Sum_probs=95.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG-   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~-   86 (299)
                      ++|.+.+++.+.|+|+||||||||+++|++.+.      .+.+.+++.++...    ..+..+.+...  ...+.++.. 
T Consensus        26 vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~----~~~~~~~~r~~--~i~~v~Q~~~   99 (326)
T PRK11022         26 ISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRI----SEKERRNLVGA--EVAMIFQDPM   99 (326)
T ss_pred             eEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcC----CHHHHHHHhCC--CEEEEecCch
Confidence            568889999999999999999999999999764      35567777765432    11222211100  001111111 


Q ss_pred             -CCCch-hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH----HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 -KSSPS-ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN----YIAKVTNGFSGADLTEICQRACKLAIRQSIET  160 (299)
Q Consensus        87 -~~~~~-~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~----~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~  160 (299)
                       ...+. .....+.+.......  ....+..+++..+++.+++.    .+......||||++|+++...++..-.+    
T Consensus       100 ~~l~p~~~v~~~i~~~l~~~~~--~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~----  173 (326)
T PRK11022        100 TSLNPCYTVGFQIMEAIKVHQG--GNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPK----  173 (326)
T ss_pred             hhcCCcCCHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCC----
Confidence             01111 111111110000000  01123345677788888883    3556778999999999997765554221    


Q ss_pred             HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                       .+..+|+....++.+...+.+.|++.+
T Consensus       174 -----------------llilDEPts~LD~~~~~~il~lL~~l~  200 (326)
T PRK11022        174 -----------------LLIADEPTTALDVTIQAQIIELLLELQ  200 (326)
T ss_pred             -----------------EEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence                             244667777778888888888887764

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.94  E-value=1e-09  Score=97.75  Aligned_cols=90  Identities=20%  Similarity=0.361  Sum_probs=70.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+..++.+.|+|.|||||||+.|+|.+...+  +.+.+++.++....                              
T Consensus        32 Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~------------------------------   81 (268)
T COG4608          32 VSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS------------------------------   81 (268)
T ss_pred             eeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc------------------------------
Confidence            7889999999999999999999999999998775  55666665543321                              


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH--HHHHHhcCCCCHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL--NYIAKVTNGFSGADLTEICQRACKL  152 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l--~~LA~~t~glSggDl~~Lv~~A~~~  152 (299)
                                         .....+|+..+++.+++  +.+.+.++.|||||+|++..+.++.
T Consensus        82 -------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALa  125 (268)
T COG4608          82 -------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALA  125 (268)
T ss_pred             -------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHh
Confidence                               12345566777788877  5677888999999999998766544

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.93  E-value=4.2e-10  Score=109.17  Aligned_cols=164  Identities=18%  Similarity=0.238  Sum_probs=107.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC------CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA------NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK   87 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~------~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~   87 (299)
                      ++|.+.+|+.+.|+|.|||||||++++|.+.+..      +.+.+++.+++..    +++..+.++.......|+.....
T Consensus        28 vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l----~~~~~r~~rg~~Ia~i~Q~p~~s  103 (539)
T COG1123          28 VSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGL----SEREMRKLRGKRIAMIFQDPMTS  103 (539)
T ss_pred             ceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcC----CHHHHHHhccccEEEEecCchhh
Confidence            6888999999999999999999999999997764      3455677666554    34444444433222233333333


Q ss_pred             CCchhh-hHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH--H-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         88 SSPSAL-RETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY--I-AKVTNGFSGADLTEICQRACKLAIRQSIETEIR  163 (299)
Q Consensus        88 ~~~~~~-~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~--L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~  163 (299)
                      .++... ...+.++...-..  ....+...|+.++++.+++.+  . ..+++.||||++|+++.+.++..-.        
T Consensus       104 lnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P--------  173 (539)
T COG1123         104 LNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKP--------  173 (539)
T ss_pred             cCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCC--------
Confidence            343222 2333332111110  002345667778999998832  2 3478999999999999876554322        


Q ss_pred             HHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        164 REREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                   ..+..+|++-..++.++.++.++|++.+
T Consensus       174 -------------~LLIaDEPTTaLDvt~q~qIL~llk~l~  201 (539)
T COG1123         174 -------------KLLIADEPTTALDVTTQAQILDLLKDLQ  201 (539)
T ss_pred             -------------CEEEECCCccccCHHHHHHHHHHHHHHH
Confidence                         1355777778888999999999999987

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=98.93  E-value=4.5e-10  Score=104.58  Aligned_cols=162  Identities=14%  Similarity=0.191  Sum_probs=94.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-----CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-----~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--   86 (299)
                      ++|.+.+++.++|+|+||||||||+++|++.+.     .+.+.+++.++...    ....++.+...  ...+.++..  
T Consensus        35 vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~----~~~~~~~~r~~--~i~~v~Q~~~~  108 (330)
T PRK09473         35 LNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNL----PEKELNKLRAE--QISMIFQDPMT  108 (330)
T ss_pred             eEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcC----CHHHHHHHhcC--CEEEEEcCchh
Confidence            567889999999999999999999999999875     45677777766432    12222211100  001111110  


Q ss_pred             CCCch-hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH----HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPS-ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN----YIAKVTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        87 ~~~~~-~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~----~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      ...+. ...+.+.+... .... ....+..+++..+++.+++.    .+......||||++|+++...++..-.+     
T Consensus       109 ~l~p~~~v~~~i~~~~~-~~~~-~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~-----  181 (330)
T PRK09473        109 SLNPYMRVGEQLMEVLM-LHKG-MSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPK-----  181 (330)
T ss_pred             hcCCCCCHHHHHHHHHH-HhcC-CCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCC-----
Confidence            01111 11111111000 0000 01123345666777777763    2345778999999999987765543221     


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                      .+..+|+....++.+..++.+.|++.+
T Consensus       182 ----------------llilDEPts~LD~~~~~~i~~lL~~l~  208 (330)
T PRK09473        182 ----------------LLIADEPTTALDVTVQAQIMTLLNELK  208 (330)
T ss_pred             ----------------EEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence                            244667777778888888888887764

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=98.93  E-value=4.4e-10  Score=105.56  Aligned_cols=154  Identities=18%  Similarity=0.206  Sum_probs=91.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|+||||||||||+|+||+...+  +.+.+++.++.....  ..+.+..+|+          ....-+ 
T Consensus        23 vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~--~~r~ig~v~Q----------~~~lfp~   90 (353)
T TIGR03265        23 ISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP--QKRDYGIVFQ----------SYALFPN   90 (353)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEeC----------CcccCCC
Confidence            5778889999999999999999999999997754  667777766542110  0111111121          111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+. +.  +...-....+..+|+..+++.+++..+. +....||||++|+++...++..-.+             
T Consensus        91 ~tv~eNi~-~~--~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~-------------  154 (353)
T TIGR03265        91 LTVADNIA-YG--LKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPG-------------  154 (353)
T ss_pred             CcHHHHHH-HH--HHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence            11111111 00  0000001123456778888999996554 5668899999999987765554221             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                              .+..+|+....+..+.+.+...|++.
T Consensus       155 --------llLLDEP~s~LD~~~r~~l~~~L~~l  180 (353)
T TIGR03265       155 --------LLLLDEPLSALDARVREHLRTEIRQL  180 (353)
T ss_pred             --------EEEEcCCcccCCHHHHHHHHHHHHHH
Confidence                    23355566666666777777776665

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.93  E-value=8.1e-10  Score=99.52  Aligned_cols=129  Identities=17%  Similarity=0.229  Sum_probs=79.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhhcc-ccccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMW-FGESEANVRDIFDKVTMENFRYAMGKSSP   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~-~g~~~~~i~~~f~~a~~~~~~~~~~~~~~   90 (299)
                      +++.|+.++.+.|+||||||||||+|+||+...+  +.|.+++..+.+.. ....++++.-+|+...   +.+..     
T Consensus        21 i~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YA---LF~Hm-----   92 (345)
T COG1118          21 ISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYA---LFPHM-----   92 (345)
T ss_pred             ceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechh---hcccc-----
Confidence            6788899999999999999999999999997764  56777776333211 1112233333343221   11100     


Q ss_pred             hhhhHHHhhcCccchhhcCC--CccHHHHHhhhcccCCHHHHHH-hcCCCCHHHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVPNITWEDIGG--LEGVKRELQELVQDVDLNYIAK-VTNGFSGADLTEICQRACKLAI  154 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r--~p~~~~R~~~l~~~v~l~~LA~-~t~glSggDl~~Lv~~A~~~a~  154 (299)
                       +..+   ++...+.-...+  ....+.|+.++++.+.++.+++ ++..+||||.|+++.+.++.+-
T Consensus        93 -tVa~---NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~e  155 (345)
T COG1118          93 -TVAD---NIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVE  155 (345)
T ss_pred             -hHHh---hhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcC
Confidence             0000   000000000011  2355677889999999999985 5589999999999877666543

>KOG0651|consensus

Probab=98.92  E-value=4.1e-10  Score=101.38  Aligned_cols=76  Identities=14%  Similarity=0.024  Sum_probs=61.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee------ccCCCCCCCCCCCCCC
Q psy13773        206 SVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM------FPSNPNQSQSGGPNSA  278 (299)
Q Consensus       206 sVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~------~~~~~~~~~~~~~~~~  278 (299)
                      .++++.|||+.+...+|+|-|++  |++.|+||-. |++---|+|+|||||||||||-      +--||--..+|.--+.
T Consensus       128 ~~s~~~~ggl~~qirelre~iel--pl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k  205 (388)
T KOG0651|consen  128 NISFENVGGLFYQIRELREVIEL--PLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK  205 (388)
T ss_pred             ccCHHHhCChHHHHHHHHhheEe--eccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh
Confidence            49999999999999999999999  9999999999 8888899999999999999974      3345544444444444


Q ss_pred             CCCCC
Q psy13773        279 PANES  283 (299)
Q Consensus       279 ~~~~~  283 (299)
                      -+.||
T Consensus       206 yiGEs  210 (388)
T KOG0651|consen  206 YIGES  210 (388)
T ss_pred             hcccH
Confidence            44443

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=98.92  E-value=6e-10  Score=103.79  Aligned_cols=162  Identities=17%  Similarity=0.223  Sum_probs=94.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KSS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~~   89 (299)
                      ++|.+.+++.++|+|+||||||||+++|++.+.  .+.+.+++.++...    ....++.+..   ...+..+..  ...
T Consensus        40 vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~----~~~~~~~~r~---~i~~v~Q~~~~~l~  112 (331)
T PRK15079         40 VTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGM----KDDEWRAVRS---DIQMIFQDPLASLN  112 (331)
T ss_pred             EEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcC----CHHHHHHHhC---ceEEEecCchhhcC
Confidence            577889999999999999999999999999775  46677777766432    1111111111   001111110  011


Q ss_pred             c-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-HH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 P-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-NY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRER  166 (299)
Q Consensus        90 ~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~  166 (299)
                      + ....+.+.......... ....+..+++..+++.+++ .. +.+....||||++|+++...++..-.+          
T Consensus       113 p~~tv~~~i~~~l~~~~~~-~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~----------  181 (331)
T PRK15079        113 PRMTIGEIIAEPLRTYHPK-LSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPK----------  181 (331)
T ss_pred             CCCCHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCC----------
Confidence            1 11112221100000000 0112334566677888888 43 456778999999999988766554221          


Q ss_pred             HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                 .+..+|+....++.+...+.+.|++.+
T Consensus       182 -----------llilDEPts~LD~~~~~~i~~lL~~l~  208 (331)
T PRK15079        182 -----------LIICDEPVSALDVSIQAQVVNLLQQLQ  208 (331)
T ss_pred             -----------EEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence                       244666777777788888888877764

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.91  E-value=1.4e-09  Score=94.69  Aligned_cols=160  Identities=13%  Similarity=0.146  Sum_probs=91.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.||||||||||+++|++.+.+  +.+.+++.++...    .......+..   ...+.++...... 
T Consensus        20 ~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~----~~~~~~~~~~---~i~~v~q~~~~~~~   92 (214)
T cd03292          20 INISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDL----RGRAIPYLRR---KIGVVFQDFRLLPD   92 (214)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccC----CHHHHHHHHH---heEEEecCchhccC
Confidence            4677889999999999999999999999998654  5566666554321    1111111100   0011111111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+... .....  .......+++..+++.+++... ......||+|++|+++...++..-.+             
T Consensus        93 ~t~~~~l~~~-~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~-------------  156 (214)
T cd03292          93 RNVYENVAFA-LEVTG--VPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPT-------------  156 (214)
T ss_pred             CcHHHHHHHH-HHHcC--CCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCC-------------
Confidence            1111111110 00000  0011234456677777888554 45568899999999987665543111             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                              -+..+|+....++.+.+.|.+.|++.+
T Consensus       157 --------llllDEPt~~LD~~~~~~~~~~l~~~~  183 (214)
T cd03292         157 --------ILIADEPTGNLDPDTTWEIMNLLKKIN  183 (214)
T ss_pred             --------EEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence                    244667777788888888988888763

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=98.91  E-value=6.8e-10  Score=101.74  Aligned_cols=155  Identities=21%  Similarity=0.253  Sum_probs=97.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.++|.||||+|||||+|+|++...+  +.+.+++.+....     ...++   +.   ..+.++.....+.
T Consensus        24 vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-----~~~~~---~~---igy~~~~~~~~~~   92 (293)
T COG1131          24 VSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-----PAKVR---RR---IGYVPQEPSLYPE   92 (293)
T ss_pred             eeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-----HHHHH---hh---eEEEccCCCCCcc
Confidence            5778899999999999999999999999998765  5566676554321     01111   10   0122211111111


Q ss_pred             -hhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 -ALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        92 -~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                       +..+.+.-+     ..+...+  ...+|++.+++.+++...+ ++..+||+|++|++....++..-.            
T Consensus        93 lT~~e~l~~~-----~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P------------  155 (293)
T COG1131          93 LTVRENLEFF-----ARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDP------------  155 (293)
T ss_pred             ccHHHHHHHH-----HHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCC------------
Confidence             111222111     0111122  3456888899999996543 456899999999998876554322            


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P  205 (299)
                               .-+..+|+....++.+..+|.+.|++...
T Consensus       156 ---------~lliLDEPt~GLDp~~~~~~~~~l~~l~~  184 (293)
T COG1131         156 ---------ELLILDEPTSGLDPESRREIWELLRELAK  184 (293)
T ss_pred             ---------CEEEECCCCcCCCHHHHHHHHHHHHHHHh
Confidence                     12456778888889999999998888753

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=98.91  E-value=6.3e-10  Score=104.39  Aligned_cols=154  Identities=18%  Similarity=0.231  Sum_probs=92.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.++|.||||||||||+|+|++...+  +.+.+++.++.....  ..+.+..+|+.          ...-+.
T Consensus        25 isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~vfQ~----------~~lfp~   92 (351)
T PRK11432         25 LNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDICMVFQS----------YALFPH   92 (351)
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEeCC----------cccCCC
Confidence            5678899999999999999999999999997754  567777766643110  01111112211          111110


Q ss_pred             -hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         92 -ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        92 -~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                       ...+.+. +......  ....+..+|+..+++.+++..+. +.+..+|||++|+++...++..-.+             
T Consensus        93 ~tv~eNi~-~~l~~~~--~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~-------------  156 (351)
T PRK11432         93 MSLGENVG-YGLKMLG--VPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPK-------------  156 (351)
T ss_pred             CCHHHHHH-HHHhHcC--CCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC-------------
Confidence             1111111 0000000  01123456777888888886655 5568899999999987665543221             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                              .+..+|+....++.+.+.+...|++.
T Consensus       157 --------lLLLDEP~s~LD~~~r~~l~~~l~~l  182 (351)
T PRK11432        157 --------VLLFDEPLSNLDANLRRSMREKIREL  182 (351)
T ss_pred             --------EEEEcCCcccCCHHHHHHHHHHHHHH
Confidence                    24455666667777777777777665

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.90  E-value=1e-09  Score=104.46  Aligned_cols=160  Identities=10%  Similarity=0.137  Sum_probs=93.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.||||||||||+|+|++.+.  .+.+.+++.++...    ....++.+...  ...+.++...... 
T Consensus        47 isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~----~~~~l~~~~~~--~igyv~Q~~~l~~~  120 (400)
T PRK10070         47 ASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKI----SDAELREVRRK--KIAMVFQSFALMPH  120 (400)
T ss_pred             EEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcC----CHHHHHHHHhC--CEEEEECCCcCCCC
Confidence            577889999999999999999999999999775  46677777665422    11111111110  0011111111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+.. ......  .......+++..+++.+++.. +.+....||||++|++....++..-.+             
T Consensus       121 ~Tv~enl~~-~~~~~~--~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~-------------  184 (400)
T PRK10070        121 MTVLDNTAF-GMELAG--INAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPD-------------  184 (400)
T ss_pred             CCHHHHHHH-HHHhcC--CCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCC-------------
Confidence            111222211 000000  011233456777888888854 456678999999999987665544221             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                              -+..+|+....++.+.+.|.+.|.+.
T Consensus       185 --------iLLLDEPts~LD~~~r~~l~~~L~~l  210 (400)
T PRK10070        185 --------ILLMDEAFSALDPLIRTEMQDELVKL  210 (400)
T ss_pred             --------EEEEECCCccCCHHHHHHHHHHHHHH
Confidence                    24455666777777888887777665

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.90  E-value=1.5e-09  Score=94.64  Aligned_cols=160  Identities=9%  Similarity=0.129  Sum_probs=92.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC-c
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-P   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-~   90 (299)
                      ++|.+.+++.++|.||||||||||+++|++.+.  .+.+.+++.++....    ......+..   ...+.++..... .
T Consensus        21 is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~----~~~~~~~~~---~i~~~~q~~~~~~~   93 (214)
T TIGR02673        21 VSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLR----GRQLPLLRR---RIGVVFQDFRLLPD   93 (214)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCC----HHHHHHHHh---heEEEecChhhccC
Confidence            467789999999999999999999999999765  355666665543210    001111100   001111111100 0


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+..... ...  .......+++..+++.+++.. +......||+|+.|+++...++..-.+             
T Consensus        94 ~tv~~~l~~~~~-~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~-------------  157 (214)
T TIGR02673        94 RTVYENVALPLE-VRG--KKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPP-------------  157 (214)
T ss_pred             CcHHHHHHHHHH-HcC--CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCC-------------
Confidence            111111110000 000  001123456667778888854 455668899999999987765543211             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                              .+..+|+....++.+...|.+.|++.+
T Consensus       158 --------lllLDEPt~~LD~~~~~~l~~~l~~~~  184 (214)
T TIGR02673       158 --------LLLADEPTGNLDPDLSERILDLLKRLN  184 (214)
T ss_pred             --------EEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence                    244677777888888899988888763

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=98.90  E-value=1.1e-09  Score=94.72  Aligned_cols=161  Identities=11%  Similarity=0.082  Sum_probs=91.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.||||+|||||+++|++.+.+  +.+.+++.++....    .......+.  +...+..+...... 
T Consensus        17 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~----~~~~~~~~~--~~i~~~~q~~~~~~~   90 (206)
T TIGR03608        17 LNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLN----SKKASKFRR--EKLGYLFQNFALIEN   90 (206)
T ss_pred             eEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccc----hhhHHHHHH--hCeeEEecchhhccC
Confidence            5677899999999999999999999999998764  55566655432110    000000000  00011111111100 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+... .....  .......+++..+++.+++... .+....||+|++++++...++..-.+             
T Consensus        91 ~t~~e~~~~~-~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~-------------  154 (206)
T TIGR03608        91 ETVEENLDLG-LKYKK--LSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPP-------------  154 (206)
T ss_pred             CcHHHHHHHH-HHhcC--CCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCC-------------
Confidence            1111111100 00000  0012234566677888888544 45668899999999987665543221             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                              .+..+|+....++.+.+.|.+.|++..
T Consensus       155 --------llllDEPt~~LD~~~~~~l~~~l~~~~  181 (206)
T TIGR03608       155 --------LILADEPTGSLDPKNRDEVLDLLLELN  181 (206)
T ss_pred             --------EEEEeCCcCCCCHHHHHHHHHHHHHHH
Confidence                    244667777778888889988888763

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.90  E-value=7e-10  Score=96.50  Aligned_cols=157  Identities=14%  Similarity=0.152  Sum_probs=91.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~   89 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...+  +.+.+++.++...    ....++.      ...+.++...  ..
T Consensus        20 vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----~~~~~~~------~i~~~~q~~~~~~~   89 (211)
T cd03225          20 ISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKL----SLKELRR------KVGLVFQNPDDQFF   89 (211)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccC----CHHHHHh------hceEEecChhhhcC
Confidence            4677889999999999999999999999997653  5566666544321    0011110      0011111100  00


Q ss_pred             chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                      .....+.+.. ......  .......+++..+++.+++.. +.+....||+|+.|+++...++..-.+            
T Consensus        90 ~~t~~~~l~~-~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~------------  154 (211)
T cd03225          90 GPTVEEEVAF-GLENLG--LPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPD------------  154 (211)
T ss_pred             CCcHHHHHHH-HHHHcC--CCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCC------------
Confidence            1111121110 000000  011223455667778888854 455668899999999887665543111            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                               .+..+|+....++.+.+.|.+.|.+.+
T Consensus       155 ---------llllDEPt~~LD~~~~~~~~~~l~~~~  181 (211)
T cd03225         155 ---------ILLLDEPTAGLDPAGRRELLELLKKLK  181 (211)
T ss_pred             ---------EEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence                     245677778888888999999888764

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=98.90  E-value=6.5e-10  Score=104.69  Aligned_cols=152  Identities=16%  Similarity=0.206  Sum_probs=88.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC----CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA----NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~----~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~   89 (299)
                      ++|.+..++.++|+||||||||||+|+||+...+    +.+.+++.++.....  ..+.+..+|+          ....-
T Consensus        24 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r~ig~vfQ----------~~~l~   91 (362)
T TIGR03258        24 LSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKRGLALLFQ----------NYALF   91 (362)
T ss_pred             eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHCCEEEEEC----------CcccC
Confidence            5677889999999999999999999999997654    556677665532100  0011111111          11111


Q ss_pred             ch-hhhHHHhhcCccchhhcCCC--ccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PS-ALRETIVEVPNITWEDIGGL--EGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRE  165 (299)
Q Consensus        90 ~~-~~~~~l~~l~~~l~~~~~r~--p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~  165 (299)
                      +. ...+.+. +.  +.  ....  ....+|+..+++.+++.. +.++...||||++|+++...++..-.+         
T Consensus        92 p~~tv~enl~-~~--l~--~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~---------  157 (362)
T TIGR03258        92 PHLKVEDNVA-FG--LR--AQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPD---------  157 (362)
T ss_pred             CCCcHHHHHH-HH--HH--HcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC---------
Confidence            11 1112111 00  00  0111  234567778888888855 456678999999999987665543222         


Q ss_pred             HHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        166 REKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                  .+..+|+....++.+.+.|...|++.
T Consensus       158 ------------llLLDEP~s~LD~~~r~~l~~~l~~l  183 (362)
T TIGR03258       158 ------------VLLLDEPLSALDANIRANMREEIAAL  183 (362)
T ss_pred             ------------EEEEcCccccCCHHHHHHHHHHHHHH
Confidence                        23355555566666666666666554

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.90  E-value=1.3e-09  Score=102.08  Aligned_cols=159  Identities=14%  Similarity=0.150  Sum_probs=92.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.||||||||||+|+|++.+.  .+.+.+++.++...    ....++.+..   ...+.++...... 
T Consensus        24 vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~----~~~~~~~~~~---~ig~v~q~~~l~~~   96 (343)
T PRK11153         24 VSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTAL----SEKELRKARR---QIGMIFQHFNLLSS   96 (343)
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcC----CHHHHHHHhc---CEEEEeCCCccCCC
Confidence            567889999999999999999999999999875  45666776655321    1111111110   0011111111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+.. ......  .......+++..+++.+++.. +.+....||||+.|++....++..-.+             
T Consensus        97 ~tv~eni~~-~~~~~~--~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~-------------  160 (343)
T PRK11153         97 RTVFDNVAL-PLELAG--TPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK-------------  160 (343)
T ss_pred             CcHHHHHHH-HHHHcC--CCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC-------------
Confidence            111122111 000000  001233456677888888854 455668899999999987665543221             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                              .+..+|+....++.+...+.+.|++.
T Consensus       161 --------iLlLDEPts~LD~~~~~~l~~~L~~l  186 (343)
T PRK11153        161 --------VLLCDEATSALDPATTRSILELLKDI  186 (343)
T ss_pred             --------EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence                    24466677777788888888887776

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=98.90  E-value=7.8e-10  Score=102.88  Aligned_cols=161  Identities=14%  Similarity=0.182  Sum_probs=94.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KSS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~~   89 (299)
                      ++|.+.+++.++|+|+||||||||+++|++.+..  +.+.+++.++...    ....++.+...   ..+.++..  ...
T Consensus        34 vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~----~~~~~~~~r~~---i~~v~Q~~~~~l~  106 (327)
T PRK11308         34 VSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA----DPEAQKLLRQK---IQIVFQNPYGSLN  106 (327)
T ss_pred             eEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC----CHHHHHHHhCC---EEEEEcCchhhcC
Confidence            5778899999999999999999999999997653  5667777665432    11122211110   01111111  111


Q ss_pred             ch-hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH--HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PS-ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN--YIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRER  166 (299)
Q Consensus        90 ~~-~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~--~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~  166 (299)
                      +. .....+.+. ...... ....+..+++..+++.+++.  .+......||||++|+++...++..-.+          
T Consensus       107 p~~~v~~~l~~~-~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~----------  174 (327)
T PRK11308        107 PRKKVGQILEEP-LLINTS-LSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPD----------  174 (327)
T ss_pred             CccCHHHHHHHH-HHHccC-CCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCC----------
Confidence            11 111111110 000000 01123455677888888883  3456778999999999998766554222          


Q ss_pred             HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                 .+..+|+....+..+...+.+.|.+.+
T Consensus       175 -----------lLilDEPts~LD~~~~~~i~~lL~~l~  201 (327)
T PRK11308        175 -----------VVVADEPVSALDVSVQAQVLNLMMDLQ  201 (327)
T ss_pred             -----------EEEEECCCccCCHHHHHHHHHHHHHHH
Confidence                       244666677777777888888777663

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=98.89  E-value=2.4e-09  Score=93.75  Aligned_cols=160  Identities=12%  Similarity=0.118  Sum_probs=91.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC-c
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-P   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-~   90 (299)
                      ++|.+.+++.++|.||||||||||+++|++...+  +.+.+++.++....    ......+..  ....+.++..... .
T Consensus        24 isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~----~~~~~~~~~--~~i~~v~q~~~~~~~   97 (221)
T TIGR02211        24 VSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLS----SNERAKLRN--KKLGFIYQFHHLLPD   97 (221)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcC----HhHHHHHHH--hcEEEEecccccCCC
Confidence            5677899999999999999999999999997654  55666665543210    111111000  0001111111111 1


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+..... ...  ....+..+++..+++.+++.. +.+....||+|+.|+++...++..-.+             
T Consensus        98 ~tv~~~l~~~~~-~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~-------------  161 (221)
T TIGR02211        98 FTALENVAMPLL-IGK--KSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPS-------------  161 (221)
T ss_pred             CcHHHHHHHHHH-hcC--CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCC-------------
Confidence            112222211000 000  001123445667778888854 445568899999999887665543111             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                              .+..+|+....++.+.+.|.+.|.+.
T Consensus       162 --------illlDEPt~~LD~~~~~~l~~~l~~~  187 (221)
T TIGR02211       162 --------LVLADEPTGNLDNNNAKIIFDLMLEL  187 (221)
T ss_pred             --------EEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence                    24466777778888888888888765

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=98.89  E-value=9.6e-10  Score=102.41  Aligned_cols=164  Identities=14%  Similarity=0.166  Sum_probs=93.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK   87 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~   87 (299)
                      ++|.+.+++.++|+|+||||||||+++|++...      .+.+.+++.++...    .....+.++..  ...+.++...
T Consensus        26 vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~----~~~~~~~~~~~--~i~~v~Q~~~   99 (330)
T PRK15093         26 VSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRL----SPRERRKLVGH--NVSMIFQEPQ   99 (330)
T ss_pred             eEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcC----CHHHHHHHhCC--CEEEEecCcc
Confidence            567889999999999999999999999999864      35677777665432    11111111110  0011111110


Q ss_pred             --CCch-hhhHHHhhcCcc--chhhc-CCCccHHHHHhhhcccCCHH----HHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy13773         88 --SSPS-ALRETIVEVPNI--TWEDI-GGLEGVKRELQELVQDVDLN----YIAKVTNGFSGADLTEICQRACKLAIRQS  157 (299)
Q Consensus        88 --~~~~-~~~~~l~~l~~~--l~~~~-~r~p~~~~R~~~l~~~v~l~----~LA~~t~glSggDl~~Lv~~A~~~a~~r~  157 (299)
                        ..+. ...+.+......  ..... .+.....+++..+++.+++.    .+......||||++|+++...++..-.+ 
T Consensus       100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~-  178 (330)
T PRK15093        100 SCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPR-  178 (330)
T ss_pred             hhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCC-
Confidence              0111 111112110000  00000 00112345667788888884    2456778999999999987765554222 


Q ss_pred             HHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        158 IETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                          .+..+|+....++.+...+.+.|++.+
T Consensus       179 --------------------llilDEPts~LD~~~~~~i~~lL~~l~  205 (330)
T PRK15093        179 --------------------LLIADEPTNAMEPTTQAQIFRLLTRLN  205 (330)
T ss_pred             --------------------EEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence                                244666777777788888888887764

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.88  E-value=7.2e-10  Score=100.83  Aligned_cols=156  Identities=11%  Similarity=0.119  Sum_probs=91.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KSS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~~   89 (299)
                      ++|.+.+|+.++|+|+||||||||+++|++.+.  .+.+.+++.++...    ....++   .   ...+.++..  ...
T Consensus        26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~----~~~~~~---~---~i~~v~q~~~~~~~   95 (279)
T PRK13650         26 VSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEE----NVWDIR---H---KIGMVFQNPDNQFV   95 (279)
T ss_pred             eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcC----cHHHHH---h---hceEEEcChHHhcc
Confidence            567789999999999999999999999999765  45677777655321    111111   0   001111110  001


Q ss_pred             chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                      .....+.+. +..  ...-.......+++..+++.+++... ......||+|++|++....++..-.+            
T Consensus        96 ~~tv~eni~-~~~--~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~------------  160 (279)
T PRK13650         96 GATVEDDVA-FGL--ENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPK------------  160 (279)
T ss_pred             cccHHHHHH-hhH--HhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCC------------
Confidence            111112221 100  00000111234567778888888654 55668999999999987665544222            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                               .+..+|+....++.+.+.|.+.|++.
T Consensus       161 ---------lLlLDEPt~~LD~~~~~~l~~~l~~l  186 (279)
T PRK13650        161 ---------IIILDEATSMLDPEGRLELIKTIKGI  186 (279)
T ss_pred             ---------EEEEECCcccCCHHHHHHHHHHHHHH
Confidence                     23455666677777788888877765

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.88  E-value=1.4e-09  Score=97.19  Aligned_cols=159  Identities=10%  Similarity=0.170  Sum_probs=89.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.||||||||||+++|++...       .+.+.+++.++...    ....++.      ...+.++..
T Consensus        22 is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~----~~~~~~~------~i~~v~q~~   91 (250)
T PRK14247         22 VNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKM----DVIELRR------RVQMVFQIP   91 (250)
T ss_pred             ceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcC----CHHHHhc------cEEEEeccC
Confidence            567788999999999999999999999999864       45667776655321    0011110      001111111


Q ss_pred             CC-CchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-----HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KS-SPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-----YIAKVTNGFSGADLTEICQRACKLAIRQSIET  160 (299)
Q Consensus        87 ~~-~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-----~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~  160 (299)
                      .. ......+.+... ........+..+..+++..+++.+++.     .+......||+|++|+++...++..-.+    
T Consensus        92 ~~~~~~tv~enl~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~----  166 (250)
T PRK14247         92 NPIPNLSIFENVALG-LKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPE----  166 (250)
T ss_pred             ccCCCCcHHHHHHHH-HHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCC----
Confidence            11 111112222110 000000001122234555666666652     3445568899999999887665543111    


Q ss_pred             HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                       .+..+|+....++.+.+.|.+.|++.+
T Consensus       167 -----------------lllLDEP~~~LD~~~~~~l~~~l~~~~  193 (250)
T PRK14247        167 -----------------VLLADEPTANLDPENTAKIESLFLELK  193 (250)
T ss_pred             -----------------EEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence                             244667777778888888888888764

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=98.88  E-value=1.7e-09  Score=99.55  Aligned_cols=156  Identities=15%  Similarity=0.162  Sum_probs=94.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.||||+|||||+++|++.+.+  +.+.+++.++...     ...++   .   ...+.++...... 
T Consensus        12 vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~---~---~i~~~~q~~~~~~~   80 (302)
T TIGR01188        12 VNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE-----PRKVR---R---SIGIVPQYASVDED   80 (302)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC-----HHHHH---h---hcEEecCCCCCCCC
Confidence            5678899999999999999999999999997754  5566776554221     11111   0   0122222211111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+.... .+..  .......+|+..+++.+++... .+....||+|+.|+++...++..-.+             
T Consensus        81 ~tv~e~l~~~~-~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~-------------  144 (302)
T TIGR01188        81 LTGRENLEMMG-RLYG--LPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPD-------------  144 (302)
T ss_pred             CcHHHHHHHHH-HHcC--CCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence            11222221100 0000  0112334567788888888654 45568899999999987665543211             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                              .+..+|+....++.+.+.|.+.|++.+
T Consensus       145 --------lllLDEPt~gLD~~~~~~l~~~l~~~~  171 (302)
T TIGR01188       145 --------VLFLDEPTTGLDPRTRRAIWDYIRALK  171 (302)
T ss_pred             --------EEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence                    244667777788888888888888764

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=98.88  E-value=9e-10  Score=104.16  Aligned_cols=153  Identities=14%  Similarity=0.221  Sum_probs=91.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+..++.++|+||||||||||+++||+...+  +.+.+++.++.....  ..+.+..+|+.          ...-+ 
T Consensus        33 vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~vfQ~----------~~lfp~  100 (375)
T PRK09452         33 LDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPA--ENRHVNTVFQS----------YALFPH  100 (375)
T ss_pred             eEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCEEEEecC----------cccCCC
Confidence            5678899999999999999999999999997764  667777776542110  01111112211          11110 


Q ss_pred             hhhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                      ....+.+.. .  +.  ..+.+  +..+|+..+++.+++.. +.++...||||++|+++...++..-.+           
T Consensus       101 ltv~eNi~~-~--l~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~-----------  164 (375)
T PRK09452        101 MTVFENVAF-G--LR--MQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPK-----------  164 (375)
T ss_pred             CCHHHHHHH-H--Hh--hcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC-----------
Confidence            111111110 0  00  01112  23556778888888855 456678999999999887655443221           


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                .+..+|+....+.-+.+.+...|++..
T Consensus       165 ----------llLLDEP~s~LD~~~r~~l~~~L~~l~  191 (375)
T PRK09452        165 ----------VLLLDESLSALDYKLRKQMQNELKALQ  191 (375)
T ss_pred             ----------EEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence                      244556666666677777777776653

>PRK10908 cell division protein FtsE; Provisional

Probab=98.88  E-value=2.5e-09  Score=93.80  Aligned_cols=160  Identities=13%  Similarity=0.168  Sum_probs=91.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC-Cc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS-SP   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~-~~   90 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...+  +.+.+++.++...    .......+ .  ....+.++.... ..
T Consensus        21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~----~~~~~~~~-~--~~i~~~~q~~~~~~~   93 (222)
T PRK10908         21 VTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRL----KNREVPFL-R--RQIGMIFQDHHLLMD   93 (222)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC----ChhHHHHH-H--hheEEEecCcccccc
Confidence            5677899999999999999999999999998754  5566666554321    01111111 0  001111111111 01


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+.. ......  ....+..+++..+++.+++.. +.+....||+|++|+++...++..-.+             
T Consensus        94 ~tv~~~l~~-~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~-------------  157 (222)
T PRK10908         94 RTVYDNVAI-PLIIAG--ASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPA-------------  157 (222)
T ss_pred             ccHHHHHHh-HHHhcC--CCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCC-------------
Confidence            111122111 000000  001122334556777778754 445568899999999987665543211             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                              .+..+|+....++.+.+.|.+.|.+.+
T Consensus       158 --------llllDEPt~~LD~~~~~~l~~~l~~~~  184 (222)
T PRK10908        158 --------VLLADEPTGNLDDALSEGILRLFEEFN  184 (222)
T ss_pred             --------EEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence                    244667777778888888888888764

>CHL00095 clpC Clp protease ATP binding subunit

Probab=98.88  E-value=1.7e-08  Score=104.62  Aligned_cols=63  Identities=30%  Similarity=0.491  Sum_probs=50.2

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHHhhc----------CCeecccchhhh--hccccccHHHHHHHHHHHHH
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQ----------ANFISVKGPELL--TMWFGESEANVRDIFDKVTM   78 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~----------~~~i~i~~~~l~--~~~~g~~~~~i~~~f~~a~~   78 (299)
                      |.-.....++|+||||||||++++.||..+.          ..++.++...+.  .++.|+.+..++.+++.+..
T Consensus       195 L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~  269 (821)
T CHL00095        195 LGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQE  269 (821)
T ss_pred             HcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHh
Confidence            3445667899999999999999999999763          456778877775  36778888899999987754

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.87  E-value=2.7e-09  Score=90.67  Aligned_cols=124  Identities=16%  Similarity=0.200  Sum_probs=77.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      +++.+.+++.++|.||||+|||||+++|++...+  +.+.+++.++...    ....++.      ...+.++       
T Consensus        18 ~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~----~~~~~~~------~i~~~~q-------   80 (180)
T cd03214          18 LSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASL----SPKELAR------KIAYVPQ-------   80 (180)
T ss_pred             eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcC----CHHHHHH------HHhHHHH-------
Confidence            4677899999999999999999999999997654  5566666554321    1011110      0011110       


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLA  170 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~  170 (299)
                                                   +++.+++.. +......||+|+.++++...++..-.+              
T Consensus        81 -----------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~--------------  117 (180)
T cd03214          81 -----------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPP--------------  117 (180)
T ss_pred             -----------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCC--------------
Confidence                                         222233322 234457899999999886654443211              


Q ss_pred             CCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        171 GNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                             -+..+|+....++.+.+.|.+.+++++
T Consensus       118 -------llllDEP~~~LD~~~~~~~~~~l~~~~  144 (180)
T cd03214         118 -------ILLLDEPTSHLDIAHQIELLELLRRLA  144 (180)
T ss_pred             -------EEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence                   244566667777788888888887763

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.87  E-value=3.2e-09  Score=84.54  Aligned_cols=55  Identities=44%  Similarity=0.773  Sum_probs=50.9

Q ss_pred             EEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHH
Q psy13773         24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTM   78 (299)
Q Consensus        24 vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~   78 (299)
                      ++|+||||||||++++++|..++.+++.+++.++.+.+.++..+.++.+|..+..
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~   55 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKK   55 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccc
Confidence            6899999999999999999999999999999999988888899999999988754

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=98.87  E-value=3.5e-10  Score=110.91  Aligned_cols=56  Identities=20%  Similarity=0.213  Sum_probs=49.9

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773        204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .|.|+|+||+|++++|+++++.+.|   ++||+.|.. |.+-..|+|||||||||||+|.
T Consensus        49 ~~~~~~~di~g~~~~k~~l~~~~~~---l~~~~~~~~~g~~~~~giLL~GppGtGKT~la  105 (495)
T TIGR01241        49 KPKVTFKDVAGIDEAKEELMEIVDF---LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLA  105 (495)
T ss_pred             CCCCCHHHhCCHHHHHHHHHHHHHH---HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHH
Confidence            5789999999999999999999998   899998865 4566679999999999999884

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.87  E-value=2.9e-09  Score=94.03  Aligned_cols=159  Identities=13%  Similarity=0.100  Sum_probs=91.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.||||+|||||+++|++.+.+  +.+.+++.++...    ....+.....   ...+.++...... 
T Consensus        24 ~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----~~~~~~~~~~---~i~~~~q~~~~~~~   96 (233)
T cd03258          24 VSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLL----SGKELRKARR---RIGMIFQHFNLLSS   96 (233)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccC----CHHHHHHHHh---heEEEccCcccCCC
Confidence            4677899999999999999999999999998764  5566776654321    1111111000   1112222111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+..... ...  ........++..+++.+++..+ ......||+|+++++....++..-.+             
T Consensus        97 ~t~~e~l~~~~~-~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~-------------  160 (233)
T cd03258          97 RTVFENVALPLE-IAG--VPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK-------------  160 (233)
T ss_pred             CcHHHHHHHHHH-HcC--CCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence            111222211000 000  0112234456677888888654 45568899999999887665543111             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                              .+..+|+....++.+.+.|.+.|.+.
T Consensus       161 --------lllLDEP~~~LD~~~~~~l~~~l~~~  186 (233)
T cd03258         161 --------VLLCDEATSALDPETTQSILALLRDI  186 (233)
T ss_pred             --------EEEecCCCCcCCHHHHHHHHHHHHHH
Confidence                    24466777777888888888888765

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.87  E-value=1.9e-09  Score=95.44  Aligned_cols=160  Identities=13%  Similarity=0.146  Sum_probs=91.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|+||||||||||+++|++.+.+  +.+.+++.++...    .......+..   ...+.++...... 
T Consensus        19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~----~~~~~~~~~~---~i~~v~q~~~~~~~   91 (235)
T cd03261          19 VDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGL----SEAELYRLRR---RMGMLFQSGALFDS   91 (235)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccc----ChhhHHHHhc---ceEEEccCcccCCC
Confidence            5677899999999999999999999999998754  5566666554321    0000111100   0011111111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+..... .... .......+++..+++.+++.. +.+....||||++|++....++..-.              
T Consensus        92 ~tv~~~l~~~~~-~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p--------------  155 (235)
T cd03261          92 LTVFENVAFPLR-EHTR-LSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDP--------------  155 (235)
T ss_pred             CcHHHHHHHHHh-hccC-CCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC--------------
Confidence            111122211000 0000 001122445667778888854 44556789999999988765544311              


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                             ..+..+|+....++.+.+.|.+.|++.
T Consensus       156 -------~llllDEPt~~LD~~~~~~l~~~l~~~  182 (235)
T cd03261         156 -------ELLLYDEPTAGLDPIASGVIDDLIRSL  182 (235)
T ss_pred             -------CEEEecCCcccCCHHHHHHHHHHHHHH
Confidence                   124466777778888888998888876

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=98.85  E-value=5.9e-09  Score=92.62  Aligned_cols=162  Identities=14%  Similarity=0.200  Sum_probs=91.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.||||||||||+++|++...  .+.+.+++.++...    .......+..   ...+.++...... 
T Consensus        21 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----~~~~~~~~~~---~i~~v~q~~~~~~~   93 (243)
T TIGR02315        21 INLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKL----RGKKLRKLRR---RIGMIFQHYNLIER   93 (243)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhC----CHHHHHHHHh---heEEEcCCCccccc
Confidence            567789999999999999999999999999765  35566666554321    0011111110   0111111111111 


Q ss_pred             hhhhHHHhhcCccc---hhhcCC--CccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVPNIT---WEDIGG--LEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRR  164 (299)
Q Consensus        91 ~~~~~~l~~l~~~l---~~~~~r--~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~  164 (299)
                      ....+.+.......   ...+..  .....+++..+++.+++.. +......||+|+.|+++...++..-.+        
T Consensus        94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~--------  165 (243)
T TIGR02315        94 LTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPD--------  165 (243)
T ss_pred             ccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCC--------
Confidence            11122221100000   000000  1223456677788888854 455668899999999987665543221        


Q ss_pred             HHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        165 EREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                   -+..+|+....++.+.+.|.+.|++.
T Consensus       166 -------------llllDEPt~~LD~~~~~~l~~~l~~~  191 (243)
T TIGR02315       166 -------------LILADEPIASLDPKTSKQVMDYLKRI  191 (243)
T ss_pred             -------------EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence                         24456666777777788888877765

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=98.85  E-value=2.7e-09  Score=92.76  Aligned_cols=153  Identities=13%  Similarity=0.124  Sum_probs=91.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.||||||||||+++|++...+  +.+.+++.++..        .    ..  ....+.++...... 
T Consensus        19 v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--------~----~~--~~i~~~~q~~~~~~~   84 (210)
T cd03269          19 ISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI--------A----AR--NRIGYLPEERGLYPK   84 (210)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH--------H----HH--ccEEEeccCCcCCcC
Confidence            5778899999999999999999999999997654  455666554321        0    00  00011111111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+... .....  .......+++..+++.+++.. +......||+|+.++++...++..-.+             
T Consensus        85 ~tv~e~l~~~-~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~-------------  148 (210)
T cd03269          85 MKVIDQLVYL-AQLKG--LKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPE-------------  148 (210)
T ss_pred             CcHHHHHHHH-HHHcC--CChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence            1112222110 00000  011233456667778888854 445668899999999887655543221             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                              .+..+|+....++-+.+.|.+.|++.+
T Consensus       149 --------~lllDEP~~~LD~~~~~~~~~~l~~~~  175 (210)
T cd03269         149 --------LLILDEPFSGLDPVNVELLKDVIRELA  175 (210)
T ss_pred             --------EEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence                    244667777778888888988888764

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=98.85  E-value=4.4e-09  Score=92.57  Aligned_cols=159  Identities=13%  Similarity=0.222  Sum_probs=91.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh-----c--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC-----Q--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l-----~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.||||||||||+++|++..     .  .+.+.+++.++....    . ....+.   ....+.++..
T Consensus        19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~----~-~~~~~~---~~i~~~~q~~   90 (227)
T cd03260          19 ISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLD----V-DVLELR---RRVGMVFQKP   90 (227)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcc----h-HHHHHH---hhEEEEecCc
Confidence            56778999999999999999999999999987     4  355666665543210    0 000100   0001111111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCc-c-HHHHHhhhcccCCHHHH-HHh--cCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLE-G-VKRELQELVQDVDLNYI-AKV--TNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p-~-~~~R~~~l~~~v~l~~L-A~~--t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      ........+.+.. ....   ..... + ..+++..+++.+++... ...  ...||+|++|+++...++..-.      
T Consensus        91 ~~~~~tv~e~l~~-~~~~---~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p------  160 (227)
T cd03260          91 NPFPGSIYDNVAY-GLRL---HGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEP------  160 (227)
T ss_pred             hhccccHHHHHHh-HHHh---cCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCC------
Confidence            0000111111110 0000   00011 1 34566777888888554 444  3889999999988765444311      


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P  205 (299)
                                     ..+..+|+....++.+.+.+.+.|++...
T Consensus       161 ---------------~llllDEPt~~LD~~~~~~l~~~l~~~~~  189 (227)
T cd03260         161 ---------------EVLLLDEPTSALDPISTAKIEELIAELKK  189 (227)
T ss_pred             ---------------CEEEEeCCCccCCHHHHHHHHHHHHHHhh
Confidence                           12446677777888888889888887643

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=98.85  E-value=2.5e-09  Score=101.98  Aligned_cols=159  Identities=13%  Similarity=0.132  Sum_probs=92.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC-Cc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS-SP   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~-~~   90 (299)
                      ++|.+.+++.++|+||||+|||||+|+|++.+.  .+.+.+++.++...    ....++      +...+..+.... ..
T Consensus        22 vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~----~~~~~~------~~ig~v~q~~~l~~~   91 (402)
T PRK09536         22 VDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEAL----SARAAS------RRVASVPQDTSLSFE   91 (402)
T ss_pred             eEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcC----CHHHHh------cceEEEccCCCCCCC
Confidence            567789999999999999999999999999765  46677777655432    111111      111122221111 11


Q ss_pred             hhhhHHHhhcCccch-hhcCC-CccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVPNITW-EDIGG-LEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~-~~~~r-~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                      ....+.+. +..... ..+.. .....+++..+++.+++..+. +....||+|++|++....++..-.+           
T Consensus        92 ~tv~e~v~-~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~-----------  159 (402)
T PRK09536         92 FDVRQVVE-MGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATP-----------  159 (402)
T ss_pred             CCHHHHHH-hccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC-----------
Confidence            11112211 100000 00111 122345677888888886655 4457899999999987765543111           


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                .+..+|+....++.+...|.+.|++..
T Consensus       160 ----------iLLLDEPtsgLD~~~~~~l~~lL~~l~  186 (402)
T PRK09536        160 ----------VLLLDEPTASLDINHQVRTLELVRRLV  186 (402)
T ss_pred             ----------EEEEECCcccCCHHHHHHHHHHHHHHH
Confidence                      244556666666777777777776653

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=98.85  E-value=2.5e-09  Score=94.55  Aligned_cols=160  Identities=12%  Similarity=0.153  Sum_probs=92.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.||||||||||+++|++.+.  .+.+.+++.++...    .......+..  +...+.++...... 
T Consensus        28 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~----~~~~~~~~~~--~~i~~v~q~~~~~~~  101 (233)
T PRK11629         28 VSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKL----SSAAKAELRN--QKLGFIYQFHHLLPD  101 (233)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC----CHHHHHHHHh--ccEEEEecCcccCCC
Confidence            567789999999999999999999999999765  35566666554321    1111111110  00011111111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+.. ......  .......+++..+++.+++..+ ......||+|+.|+++...++..-.              
T Consensus       102 ~tv~e~l~~-~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p--------------  164 (233)
T PRK11629        102 FTALENVAM-PLLIGK--KKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNP--------------  164 (233)
T ss_pred             CCHHHHHHH-HHHhcC--CCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCC--------------
Confidence            112222211 000000  0112334566778888888554 4556789999999998765544311              


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                             ..+..+|+....++.+.+.+.+.|++.
T Consensus       165 -------~lllLDEPt~~LD~~~~~~l~~~l~~~  191 (233)
T PRK11629        165 -------RLVLADEPTGNLDARNADSIFQLLGEL  191 (233)
T ss_pred             -------CEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence                   124466777777888888888888776

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=98.85  E-value=1.5e-09  Score=102.85  Aligned_cols=125  Identities=15%  Similarity=0.200  Sum_probs=74.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.++|.||||||||||+|+||+...+  +.+.+++.++....  ...+.+..+|+.          ...-+.
T Consensus        38 vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~--~~~r~ig~vfQ~----------~~lfp~  105 (377)
T PRK11607         38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP--PYQRPINMMFQS----------YALFPH  105 (377)
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC--HHHCCEEEEeCC----------CccCCC
Confidence            5778899999999999999999999999997654  56777776653210  001111111211          111111


Q ss_pred             -hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHH
Q psy13773         92 -ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLA  153 (299)
Q Consensus        92 -~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a  153 (299)
                       ...+.+.- .  +...-....+..+|+..+++.+++..+ .++...||||+.|+++...++..
T Consensus       106 ltv~eNi~~-~--l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~  166 (377)
T PRK11607        106 MTVEQNIAF-G--LKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAK  166 (377)
T ss_pred             CCHHHHHHH-H--HHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence             11111110 0  000000112345677788888888554 46668999999999887765554

>KOG0742|consensus

Probab=98.85  E-value=2.5e-08  Score=92.97  Aligned_cols=58  Identities=29%  Similarity=0.661  Sum_probs=45.2

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHH
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTM   78 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~   78 (299)
                      +=+.|++|||||+|||+++|-||...|..+-...+-|+.-. -.+....|.++|+.+..
T Consensus       383 pfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~qaVTkiH~lFDWakk  440 (630)
T KOG0742|consen  383 PFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQAVTKIHKLFDWAKK  440 (630)
T ss_pred             hhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chHHHHHHHHHHHHHhh
Confidence            44679999999999999999999999988877777766432 11245678899988764

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=98.84  E-value=3.7e-09  Score=92.55  Aligned_cols=157  Identities=13%  Similarity=0.087  Sum_probs=91.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC-c
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-P   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-~   90 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...+  +.+.+++.++...    .    ..+..   ...+.++..... .
T Consensus        21 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----~----~~~~~---~i~~v~q~~~~~~~   89 (220)
T cd03263          21 LSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD----R----KAARQ---SLGYCPQFDALFDE   89 (220)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc----h----HHHhh---hEEEecCcCCcccc
Confidence            5677899999999999999999999999997654  5566666554221    0    00000   001111111111 1


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+.. ......  .......+++..+++.+++... ......||+|+.|++....++..-.+             
T Consensus        90 ~tv~~~l~~-~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~-------------  153 (220)
T cd03263          90 LTVREHLRF-YARLKG--LPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPS-------------  153 (220)
T ss_pred             CCHHHHHHH-HHHHcC--CCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence            111122111 000000  0011234566677888888544 45568899999999887655543111             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P  205 (299)
                              -+..+|+....++-+.+.+.+.|++...
T Consensus       154 --------llllDEP~~~LD~~~~~~l~~~l~~~~~  181 (220)
T cd03263         154 --------VLLLDEPTSGLDPASRRAIWDLILEVRK  181 (220)
T ss_pred             --------EEEECCCCCCCCHHHHHHHHHHHHHHhc
Confidence                    2446677777788888899998887654

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.84  E-value=1.1e-09  Score=99.69  Aligned_cols=156  Identities=12%  Similarity=0.145  Sum_probs=89.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC-----CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA-----NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK-   87 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~-----~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~-   87 (299)
                      ++|.+.+++.++|.||||||||||+++|++.+.+     +.+.+++.++...    ....++.      ...+.++... 
T Consensus        26 v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~----~~~~~~~------~ig~v~q~~~~   95 (282)
T PRK13640         26 ISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAK----TVWDIRE------KVGIVFQNPDN   95 (282)
T ss_pred             EEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcC----CHHHHHh------heEEEEECHHH
Confidence            4677899999999999999999999999998754     5677777655321    1011110      0011111100 


Q ss_pred             -CCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         88 -SSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRE  165 (299)
Q Consensus        88 -~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~  165 (299)
                       .......+.+. +.  .........+..+++..+++.+++.. +......||+|++++++...++..-.+         
T Consensus        96 ~~~~~tv~enl~-~~--~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~---------  163 (282)
T PRK13640         96 QFVGATVGDDVA-FG--LENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPK---------  163 (282)
T ss_pred             hhccCCHHHHHH-hh--HHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC---------
Confidence             00111112221 00  00000011123456777888888855 456668999999999887665543221         


Q ss_pred             HHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        166 REKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                  .+..+|+....++.+.+.+.+.|++.
T Consensus       164 ------------llllDEPt~gLD~~~~~~l~~~l~~l  189 (282)
T PRK13640        164 ------------IIILDESTSMLDPAGKEQILKLIRKL  189 (282)
T ss_pred             ------------EEEEECCcccCCHHHHHHHHHHHHHH
Confidence                        23355666666777777777777665

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=98.84  E-value=2.9e-09  Score=93.80  Aligned_cols=160  Identities=13%  Similarity=0.164  Sum_probs=91.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...+  +.+.+++.++...    ..........  ....+.++...... 
T Consensus        29 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~----~~~~~~~~~~--~~i~~~~q~~~l~~~  102 (228)
T PRK10584         29 VELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQM----DEEARAKLRA--KHVGFVFQSFMLIPT  102 (228)
T ss_pred             cEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccC----CHHHHHHHHh--heEEEEEcccccCCC
Confidence            4677899999999999999999999999998654  5556666544321    1111000000  00011111111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+.. ......  ...+...+++..+++.+++.. +......||+|++|++....++..-.+             
T Consensus       103 ~tv~~~l~~-~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~-------------  166 (228)
T PRK10584        103 LNALENVEL-PALLRG--ESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPD-------------  166 (228)
T ss_pred             cCHHHHHHH-HHHhcC--CCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence            111111110 000000  011233556777888888854 455668899999999987655443111             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                              .+..+|+....++.+.+.|.+.|.+.
T Consensus       167 --------llllDEPt~~LD~~~~~~l~~~l~~~  192 (228)
T PRK10584        167 --------VLFADEPTGNLDRQTGDKIADLLFSL  192 (228)
T ss_pred             --------EEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence                    24466777777788888888888765

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.84  E-value=3.4e-09  Score=98.66  Aligned_cols=133  Identities=18%  Similarity=0.240  Sum_probs=87.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC-CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCchh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA-NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSA   92 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~-~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~~   92 (299)
                      +++.+.+++.+.|+|.+||||||+.++|.+.+.+ +.|.+++.++...    +.+.++.+...-.. .|+....+..+..
T Consensus       306 isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~----~~~~mrplR~~mQv-VFQDPygSLsPRm  380 (534)
T COG4172         306 ISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGL----SRKEMRPLRRRMQV-VFQDPYGSLSPRM  380 (534)
T ss_pred             ceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCcccccc----ChhhhhhhhhhceE-EEeCCCCCCCccc
Confidence            5677899999999999999999999999998764 6788888888654    44444443332111 2333333333332


Q ss_pred             hh-HHHhhcCccchhhcCCCccHHHHHhhhcccCCH--HHHHHhcCCCCHHHHHHHHHHHHHH
Q psy13773         93 LR-ETIVEVPNITWEDIGGLEGVKRELQELVQDVDL--NYIAKVTNGFSGADLTEICQRACKL  152 (299)
Q Consensus        93 ~~-~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l--~~LA~~t~glSggDl~~Lv~~A~~~  152 (299)
                      .. +.+.+- -.+........++.+|+...+..+++  ....++++.||||+.|+++.+.++.
T Consensus       381 tV~qII~EG-L~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAli  442 (534)
T COG4172         381 TVGQIIEEG-LRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALI  442 (534)
T ss_pred             CHHHHhhhh-hhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHh
Confidence            22 222221 11111112234567788888888888  5678999999999999998766543

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.84  E-value=1.1e-09  Score=99.33  Aligned_cols=157  Identities=13%  Similarity=0.119  Sum_probs=92.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KSS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~~   89 (299)
                      ++|.+.+++.++|.|+||||||||+++|++.+.  .+.+.+++.++...    ....++.      ...+.++..  ...
T Consensus        24 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----~~~~~~~------~i~~v~q~~~~~~~   93 (274)
T PRK13647         24 LSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAE----NEKWVRS------KVGLVFQDPDDQVF   93 (274)
T ss_pred             EEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCC----CHHHHHh------hEEEEecChhhhhc
Confidence            557789999999999999999999999999765  45677776654321    1111110      001111110  000


Q ss_pred             chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                      .....+.+. +... ... .......+++..+++.+++.. +.+....||+|++|++....++..-.+            
T Consensus        94 ~~tv~e~l~-~~~~-~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~------------  158 (274)
T PRK13647         94 SSTVWDDVA-FGPV-NMG-LDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPD------------  158 (274)
T ss_pred             cCcHHHHHH-hhHH-HcC-CCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC------------
Confidence            011112221 0000 000 001123456667788888854 455668999999999887765544221            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                               -+..+|+....++.+.+.|.+.|++.+
T Consensus       159 ---------llllDEPt~~LD~~~~~~l~~~l~~~~  185 (274)
T PRK13647        159 ---------VIVLDEPMAYLDPRGQETLMEILDRLH  185 (274)
T ss_pred             ---------EEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence                     244667777778888888888887764

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=98.84  E-value=1.6e-09  Score=102.48  Aligned_cols=154  Identities=14%  Similarity=0.181  Sum_probs=89.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.||||||||||+++|++...+  +.+.+++.++.....  ..+.+          .+.++....-. 
T Consensus        22 vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i----------~~v~Q~~~l~~~   89 (369)
T PRK11000         22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGV----------GMVFQSYALYPH   89 (369)
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCE----------EEEeCCcccCCC
Confidence            5677889999999999999999999999997654  566677665532100  00001          11111111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+.. ......  ....+..+|+..+++.+++..+ .+....||||++|+++...++..-.+             
T Consensus        90 ~tv~eni~~-~~~~~~--~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~-------------  153 (369)
T PRK11000         90 LSVAENMSF-GLKLAG--AKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS-------------  153 (369)
T ss_pred             CCHHHHHHh-HHhhcC--CCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence            111121110 000000  0112334577788888888654 45668999999999987665543221             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                              .+..+|+....++.+.+.+.+.|+++
T Consensus       154 --------lLLLDEPts~LD~~~~~~l~~~L~~l  179 (369)
T PRK11000        154 --------VFLLDEPLSNLDAALRVQMRIEISRL  179 (369)
T ss_pred             --------EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence                    24455666666667777777666655

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=98.84  E-value=5.2e-09  Score=91.17  Aligned_cols=155  Identities=19%  Similarity=0.183  Sum_probs=91.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC---
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS---   88 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~---   88 (299)
                      ++|.+.+++.++|.||||||||||+++|++...+  +.+.+++.++.         ..+      ....+.++....   
T Consensus        18 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~---------~~~------~~i~~v~q~~~~~~~   82 (213)
T cd03235          18 VSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE---------KER------KRIGYVPQRRSIDRD   82 (213)
T ss_pred             ceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH---------HHH------hheEEeccccccccC
Confidence            5678899999999999999999999999997654  45556654432         000      000111111110   


Q ss_pred             CchhhhHHHhhcCccchhhcCC-CccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         89 SPSALRETIVEVPNITWEDIGG-LEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRER  166 (299)
Q Consensus        89 ~~~~~~~~l~~l~~~l~~~~~r-~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~  166 (299)
                      ......+.+............. .....++...+++.+++... .+....||+|+.|+++...++..-.+          
T Consensus        83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~----------  152 (213)
T cd03235          83 FPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPD----------  152 (213)
T ss_pred             CCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCC----------
Confidence            0011222221100000000000 11234566677888888554 45668899999999987665543111          


Q ss_pred             HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                 .+..+|+....++.+.+.|.+.|++..
T Consensus       153 -----------llllDEPt~~LD~~~~~~l~~~l~~~~  179 (213)
T cd03235         153 -----------LLLLDEPFAGVDPKTQEDIYELLRELR  179 (213)
T ss_pred             -----------EEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence                       244667777888888999999888764

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=98.83  E-value=3.3e-09  Score=92.91  Aligned_cols=155  Identities=15%  Similarity=0.125  Sum_probs=90.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.||||+|||||+++|++.+.+  +.+.+++.++...     ....+      ....+.++...... 
T Consensus        19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-----~~~~~------~~i~~~~q~~~~~~~   87 (220)
T cd03265          19 VSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-----PREVR------RRIGIVFQDLSVDDE   87 (220)
T ss_pred             eeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-----hHHHh------hcEEEecCCcccccc
Confidence            5677889999999999999999999999997654  4566665543211     01110      00011221111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+.. ......  ....+..+++..+++.+++.. +......||+|++|+++...++..-.+             
T Consensus        88 ~tv~~~l~~-~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~-------------  151 (220)
T cd03265          88 LTGWENLYI-HARLYG--VPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPE-------------  151 (220)
T ss_pred             CcHHHHHHH-HHHHcC--CCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence            111111110 000000  001223456677788888854 455668899999999887655443111             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                              .+..+|+....++.+.+.|.+.|.+.
T Consensus       152 --------llllDEPt~~LD~~~~~~l~~~l~~~  177 (220)
T cd03265         152 --------VLFLDEPTIGLDPQTRAHVWEYIEKL  177 (220)
T ss_pred             --------EEEEcCCccCCCHHHHHHHHHHHHHH
Confidence                    24466777777788888888888765

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=98.83  E-value=2.6e-09  Score=93.02  Aligned_cols=154  Identities=12%  Similarity=0.191  Sum_probs=90.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC-c
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-P   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-~   90 (299)
                      ++|.+.+++.++|.||||+|||||+++|++.+.  .+.+.+++.++.....  ....+..+++          ..... .
T Consensus        19 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~--~~~~i~~~~q----------~~~~~~~   86 (213)
T cd03301          19 LNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP--KDRDIAMVFQ----------NYALYPH   86 (213)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--ccceEEEEec----------ChhhccC
Confidence            467789999999999999999999999999765  3556676665532100  0001111111          10000 0


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+.. ......  .......+++..+++.+++.. +......||+|+.|+++...++..-.+             
T Consensus        87 ~tv~~~l~~-~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~-------------  150 (213)
T cd03301          87 MTVYDNIAF-GLKLRK--VPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPK-------------  150 (213)
T ss_pred             CCHHHHHHH-HHHhcC--CCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence            111111110 000000  011223445667778888854 455668899999999887655443111             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                              .+..+|+....++-+.+.+.+.|++.
T Consensus       151 --------llllDEPt~~LD~~~~~~l~~~l~~~  176 (213)
T cd03301         151 --------VFLMDEPLSNLDAKLRVQMRAELKRL  176 (213)
T ss_pred             --------EEEEcCCcccCCHHHHHHHHHHHHHH
Confidence                    24466777777888888888888776

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.83  E-value=3.9e-09  Score=92.23  Aligned_cols=156  Identities=17%  Similarity=0.216  Sum_probs=93.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      .+|.+.+++.++|.|+||||||||+++|++...  .+.+.+++.++..     ...   . +.  ....+.++...... 
T Consensus        24 ~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~---~-~~--~~i~~~~q~~~~~~~   92 (218)
T cd03266          24 VSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-----EPA---E-AR--RRLGFVSDSTGLYDR   92 (218)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-----CHH---H-HH--hhEEEecCCcccCcC
Confidence            356778999999999999999999999999765  4556666654421     000   1 10  00112222111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+... .....  ....+..+++..+++.+++.. +.+....+|+|+.++++...++..-.+             
T Consensus        93 ~tv~e~l~~~-~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~-------------  156 (218)
T cd03266          93 LTARENLEYF-AGLYG--LKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPP-------------  156 (218)
T ss_pred             CCHHHHHHHH-HHHcC--CCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCC-------------
Confidence            1122222110 00000  011233556677888888854 556778899999999887665543111             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                              .+..+|+....++.+.+.|.+.|++.+
T Consensus       157 --------illlDEPt~~LD~~~~~~l~~~l~~~~  183 (218)
T cd03266         157 --------VLLLDEPTTGLDVMATRALREFIRQLR  183 (218)
T ss_pred             --------EEEEcCCCcCCCHHHHHHHHHHHHHHH
Confidence                    244667777788888888988888764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=98.83  E-value=2.5e-09  Score=93.19  Aligned_cols=154  Identities=17%  Similarity=0.208  Sum_probs=89.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC-Cc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS-SP   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~-~~   90 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...+  +.+.+++.++....  ...+.+..+++          .... ..
T Consensus        19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~v~q----------~~~~~~~   86 (213)
T cd03259          19 LSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGMVFQ----------DYALFPH   86 (213)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEEEcC----------chhhccC
Confidence            5678899999999999999999999999997653  55666665543210  00000111111          0000 00


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+.. .  ....-.......+++..+++.+++.. +.+....||+|++|+++...++..-.+             
T Consensus        87 ~tv~~~l~~-~--~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~-------------  150 (213)
T cd03259          87 LTVAENIAF-G--LKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPS-------------  150 (213)
T ss_pred             CcHHHHHHh-H--HHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence            111111110 0  00000001223445667778888854 455568899999999987665543111             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                              .+..+|+....++.+...|.+.|.+.
T Consensus       151 --------~lllDEPt~~LD~~~~~~l~~~l~~~  176 (213)
T cd03259         151 --------LLLLDEPLSALDAKLREELREELKEL  176 (213)
T ss_pred             --------EEEEcCCcccCCHHHHHHHHHHHHHH
Confidence                    24466777777888888888888775

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.83  E-value=1.4e-09  Score=99.02  Aligned_cols=157  Identities=15%  Similarity=0.139  Sum_probs=92.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KSS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~~   89 (299)
                      ++|.+.+|+.++|.||||+|||||+++|++.+.  .+.+.+++.++...    ....++.      ...+.++..  ...
T Consensus        26 vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~----~~~~~~~------~i~~~~q~~~~~~~   95 (279)
T PRK13635         26 VSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEE----TVWDVRR------QVGMVFQNPDNQFV   95 (279)
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcC----cHHHHhh------heEEEEeCHHHhcc
Confidence            567789999999999999999999999999775  45567777665321    1111110      001111100  000


Q ss_pred             chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                      .....+.+.. .  .........+..+++..+++.+++.. +......||+|+++++....++..-.+            
T Consensus        96 ~~tv~enl~~-~--~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~------------  160 (279)
T PRK13635         96 GATVQDDVAF-G--LENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPD------------  160 (279)
T ss_pred             cccHHHHHhh-h--HhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC------------
Confidence            0111122211 0  00000011223456677778788854 455668899999999887665543221            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                               .+..+|+....++.+.+.|.+.|.+..
T Consensus       161 ---------lllLDEPt~gLD~~~~~~l~~~l~~l~  187 (279)
T PRK13635        161 ---------IIILDEATSMLDPRGRREVLETVRQLK  187 (279)
T ss_pred             ---------EEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence                     244667777778888888888887664

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=98.82  E-value=3.7e-09  Score=92.18  Aligned_cols=156  Identities=12%  Similarity=0.151  Sum_probs=93.4

Q ss_pred             hhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773         13 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP   90 (299)
Q Consensus        13 ~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~   90 (299)
                      -+++.+.+++.++|.||||+|||||+++|++...  .+.+.+++.++...    .  ..+      +...+.++......
T Consensus        16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----~--~~~------~~i~~v~q~~~~~~   83 (213)
T TIGR01277        16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGL----A--PYQ------RPVSMLFQENNLFA   83 (213)
T ss_pred             eeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccC----C--hhc------cceEEEeccCccCC
Confidence            3578889999999999999999999999999875  45566776554321    0  000      00011121111111


Q ss_pred             -hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 -SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        91 -~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                       ....+.+.. .  ............+++..+++.+++..+ .+....||+|+++++....++..-.+            
T Consensus        84 ~~t~~en~~~-~--~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~------------  148 (213)
T TIGR01277        84 HLTVRQNIGL-G--LHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNP------------  148 (213)
T ss_pred             CCcHHHHHHh-H--hhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCC------------
Confidence             111122211 0  000000011234566677888888554 45568999999999987665543211            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                               .+..+|+....++.+.+.|.+.|++..
T Consensus       149 ---------llllDEPt~~LD~~~~~~~~~~l~~~~  175 (213)
T TIGR01277       149 ---------ILLLDEPFSALDPLLREEMLALVKQLC  175 (213)
T ss_pred             ---------EEEEcCCCccCCHHHHHHHHHHHHHHH
Confidence                     244667777788888888988888763

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.82  E-value=1.2e-08  Score=87.73  Aligned_cols=125  Identities=18%  Similarity=0.226  Sum_probs=74.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      +++.+.+++.+.|.||||+|||||+|+|++++.+  +.+.+++.++.+. ........+         +..++.....-.
T Consensus        20 vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~-~~~~lA~~r---------aVlpQ~s~laFp   89 (259)
T COG4559          20 VSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSW-PPEELARHR---------AVLPQNSSLAFP   89 (259)
T ss_pred             cceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhC-CHHHHHHHh---------hhcccCcccccc
Confidence            5677899999999999999999999999999875  4555666655442 211111222         222322221111


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHH-HhhhcccCCHHHHHHhc-CCCCHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRE-LQELVQDVDLNYIAKVT-NGFSGADLTEICQRA  149 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R-~~~l~~~v~l~~LA~~t-~glSggDl~~Lv~~A  149 (299)
                      .....+.++-..-. ...+.|.+.+| ....+...|+..+|.+. ..+|||+.|++-...
T Consensus        90 Ftv~eVV~mGr~p~-~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlAR  148 (259)
T COG4559          90 FTVQEVVQMGRIPH-RSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLAR  148 (259)
T ss_pred             eEHHHHHHhccccc-ccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHH
Confidence            11122222211110 01223444444 44778889999998766 679999999976543

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=98.82  E-value=2.6e-09  Score=101.12  Aligned_cols=161  Identities=12%  Similarity=0.109  Sum_probs=91.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccch----hhhhccccccHHHHHHHHHHHHHHHHhhhhcC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGP----ELLTMWFGESEANVRDIFDKVTMENFRYAMGK   87 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~----~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~   87 (299)
                      ++|.+.+++.++|+|+||||||||+|+|++.+.+  +.+.+++.    ++...    ....++.+...  ...+.++...
T Consensus        43 vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~----~~~~l~~~r~~--~i~~vfQ~~~  116 (382)
T TIGR03415        43 ASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANC----DAATLRRLRTH--RVSMVFQKFA  116 (382)
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccC----CHHHHHHHhcC--CEEEEECCCc
Confidence            5778899999999999999999999999997754  56667653    22211    11222211110  0011111111


Q ss_pred             CCc-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         88 SSP-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRE  165 (299)
Q Consensus        88 ~~~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~  165 (299)
                      ..+ ....+.+.. .  +...-.......+++..+++.+++... ......||||++|++....++..-.+         
T Consensus       117 l~p~~Tv~eNi~~-~--~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~---------  184 (382)
T TIGR03415       117 LMPWLTVEENVAF-G--LEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDAD---------  184 (382)
T ss_pred             CCCCCcHHHHHHH-H--HHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC---------
Confidence            111 111122110 0  000000112334667788888888554 45557899999999987665543211         


Q ss_pred             HHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        166 REKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                  -+..+|+....++.+..+|.+.|.+.+
T Consensus       185 ------------ILLlDEPts~LD~~~r~~l~~~L~~l~  211 (382)
T TIGR03415       185 ------------ILLMDEPFSALDPLIRTQLQDELLELQ  211 (382)
T ss_pred             ------------EEEEECCCccCCHHHHHHHHHHHHHHH
Confidence                        233556666667777777777776653

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.82  E-value=4e-09  Score=96.27  Aligned_cols=160  Identities=12%  Similarity=0.137  Sum_probs=90.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KSS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~~   89 (299)
                      ++|.+.+++.++|.||||||||||+++|++...  .+.+.+++.++...........++   .   ...+.++..  ...
T Consensus        26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~---~---~ig~v~q~~~~~l~   99 (286)
T PRK13646         26 VNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVR---K---RIGMVFQFPESQLF   99 (286)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHH---h---heEEEecChHhccc
Confidence            567789999999999999999999999999765  456777776653211111111111   0   001111110  000


Q ss_pred             chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-HH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-YI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                      .....+.+...+.   ..-.......+++..++..+++. .+ ......||+|++|+++...++..-.+           
T Consensus       100 ~~tv~e~i~~~~~---~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~-----------  165 (286)
T PRK13646        100 EDTVEREIIFGPK---NFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPD-----------  165 (286)
T ss_pred             hhhHHHHHHhhHH---HcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCC-----------
Confidence            0111122210000   00001122345667788888884 44 45678999999999887665543211           


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                .+..+++....++.+...+.+.|++.
T Consensus       166 ----------illlDEPt~~LD~~~~~~l~~~l~~l  191 (286)
T PRK13646        166 ----------IIVLDEPTAGLDPQSKRQVMRLLKSL  191 (286)
T ss_pred             ----------EEEEECCcccCCHHHHHHHHHHHHHH
Confidence                      23455666666777777777777664

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=98.82  E-value=4.8e-09  Score=92.37  Aligned_cols=154  Identities=15%  Similarity=0.210  Sum_probs=89.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.++|.||||||||||+++|++...  .+.+.+++.++....    ....+      ....+.++.......
T Consensus        26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~----~~~~~------~~i~~~~q~~~l~~~   95 (225)
T PRK10247         26 ISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLK----PEIYR------QQVSYCAQTPTLFGD   95 (225)
T ss_pred             cEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCC----HHHHH------hccEEEecccccccc
Confidence            567789999999999999999999999999764  455666665443210    00010      000111111111111


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-HH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-NY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ...+.+.. ..    .........++...+++.+++ .. +......||+|+.++++...++..-.              
T Consensus        96 tv~enl~~-~~----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p--------------  156 (225)
T PRK10247         96 TVYDNLIF-PW----QIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMP--------------  156 (225)
T ss_pred             cHHHHHHh-HH----hhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCC--------------
Confidence            12222211 00    001112234556677888888 33 45666889999999998765544311              


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                             ..+..+|+....++.+.+.|.+.|.+.
T Consensus       157 -------~llllDEPt~~LD~~~~~~l~~~l~~~  183 (225)
T PRK10247        157 -------KVLLLDEITSALDESNKHNVNEIIHRY  183 (225)
T ss_pred             -------CEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence                   124466677777778888888888775

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.82  E-value=4.1e-09  Score=87.71  Aligned_cols=133  Identities=15%  Similarity=0.182  Sum_probs=83.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh--cCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC--QANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l--~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      +++.+.+++.+.|+||+|+|||||+-.+|+.-  ..+.+++.+..+...    .+..... |+.. .-.|..+.-...+.
T Consensus        29 V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~l----dEd~rA~-~R~~-~vGfVFQSF~Lip~  102 (228)
T COG4181          29 VELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKL----DEDARAA-LRAR-HVGFVFQSFHLIPN  102 (228)
T ss_pred             ceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhc----CHHHHHH-hhcc-ceeEEEEeeecccc
Confidence            66788999999999999999999999999954  456777888777654    2222221 2111 00111111111111


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-HHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-NYIAKVTNGFSGADLTEICQRACKLAI  154 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-~~LA~~t~glSggDl~~Lv~~A~~~a~  154 (299)
                      ...-....+|-.+..  ....+..++...++..+++ +.+..++..+|||+.|+++...++.+-
T Consensus       103 ltAlENV~lPleL~g--e~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~  164 (228)
T COG4181         103 LTALENVALPLELRG--ESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGR  164 (228)
T ss_pred             chhhhhccchhhhcC--CccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCC
Confidence            111111112222221  1245667778888999999 778899999999999999877666553

>KOG0740|consensus

Probab=98.81  E-value=1.4e-09  Score=102.86  Aligned_cols=67  Identities=18%  Similarity=0.066  Sum_probs=57.3

Q ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        194 AHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       194 ~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      ..+.+-+-...+.|.|+||.|++++|+.+.+.+.|  |+..|++|..--.=.-|+||.||||||||+|-
T Consensus       137 ~~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~--p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~  203 (428)
T KOG0740|consen  137 EGIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVIL--PLLRPDLFLGLREPVRGLLLFGPPGTGKTMLA  203 (428)
T ss_pred             HHHHHHHhccCCcccccCCcchhhHHHHhhhhhhh--cccchHhhhccccccchhheecCCCCchHHHH
Confidence            34444455555779999999999999999999999  99999999876666669999999999999874

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.81  E-value=4.1e-09  Score=91.33  Aligned_cols=152  Identities=16%  Similarity=0.142  Sum_probs=89.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.|+||+|||||+++|++.+.+  +.+.+++.++...         ...+.  +...+..+...... 
T Consensus        20 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~---------~~~~~--~~~~~~~~~~~~~~~   88 (204)
T PRK13538         20 LSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQ---------RDEYH--QDLLYLGHQPGIKTE   88 (204)
T ss_pred             ceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccc---------hHHhh--hheEEeCCccccCcC
Confidence            5678899999999999999999999999997764  4556665544211         00010  00011111111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+... .   . ... ....+++..+++.+++... ......||+|++++++...++..-.+             
T Consensus        89 ~tv~e~l~~~-~---~-~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~-------------  149 (204)
T PRK13538         89 LTALENLRFY-Q---R-LHG-PGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAP-------------  149 (204)
T ss_pred             CcHHHHHHHH-H---H-hcC-ccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCC-------------
Confidence            1111221110 0   0 000 1234566677888888544 45557899999999887554433111             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                              .+..+|+....++.+.+.+.+.|++.
T Consensus       150 --------llllDEPt~~LD~~~~~~l~~~l~~~  175 (204)
T PRK13538        150 --------LWILDEPFTAIDKQGVARLEALLAQH  175 (204)
T ss_pred             --------EEEEeCCCccCCHHHHHHHHHHHHHH
Confidence                    24466777777888888888888765

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.81  E-value=4.4e-09  Score=91.15  Aligned_cols=149  Identities=17%  Similarity=0.208  Sum_probs=88.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~   89 (299)
                      ++|.+.+++.++|.||||||||||+++|++...+  +.+.+++.++..       ...+      +...+.++...  ..
T Consensus        19 v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-------~~~~------~~i~~~~q~~~~~~~   85 (205)
T cd03226          19 LSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA-------KERR------KSIGYVMQDVDYQLF   85 (205)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh-------HHhh------cceEEEecChhhhhh
Confidence            4677899999999999999999999999997654  455566554321       0000      00011111100  00


Q ss_pred             chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                      .....+.+.. ..   .   .......++..+++.+++... .+....||+|+.|++....++..-.+            
T Consensus        86 ~~tv~e~l~~-~~---~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~------------  146 (205)
T cd03226          86 TDSVREELLL-GL---K---ELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKD------------  146 (205)
T ss_pred             hccHHHHHhh-hh---h---hcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCC------------
Confidence            0111111110 00   0   011223566677778888543 45567899999999987655443111            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                               -+..+|+....++.+.+.|.+.|++.
T Consensus       147 ---------llllDEPt~~LD~~~~~~l~~~l~~~  172 (205)
T cd03226         147 ---------LLIFDEPTSGLDYKNMERVGELIREL  172 (205)
T ss_pred             ---------EEEEeCCCccCCHHHHHHHHHHHHHH
Confidence                     24466777788888899999988876

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>KOG0734|consensus

Probab=98.81  E-value=8.5e-10  Score=105.42  Aligned_cols=54  Identities=22%  Similarity=0.275  Sum_probs=50.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCC-cccccCCCCCCCeeee
Q psy13773        206 SVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGP-NSAPANESGTGGILLM  262 (299)
Q Consensus       206 sVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s-~~l~~g~~gtg~~ll~  262 (299)
                      +|+++||.|.++.|+++.|.|++   ||.|+-|...-.|=+ ||||.||||||||||-
T Consensus       300 nv~F~dVkG~DEAK~ELeEiVef---LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLA  354 (752)
T KOG0734|consen  300 NVTFEDVKGVDEAKQELEEIVEF---LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLA  354 (752)
T ss_pred             ccccccccChHHHHHHHHHHHHH---hcCcHHhhhccCcCCCceEEeCCCCCchhHHH
Confidence            69999999999999999999999   999999998776654 9999999999999995

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.81  E-value=6.7e-09  Score=90.37  Aligned_cols=160  Identities=15%  Similarity=0.168  Sum_probs=91.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.||||||||||+++|++...  .+.+.+++.++...     ...... +.  ....+.++...... 
T Consensus        19 ~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-----~~~~~~-~~--~~i~~~~q~~~~~~~   90 (213)
T cd03262          19 IDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDD-----KKNINE-LR--QKVGMVFQQFNLFPH   90 (213)
T ss_pred             ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCcc-----chhHHH-HH--hcceEEecccccCCC
Confidence            567789999999999999999999999999765  35566666544210     000000 00  00011111111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+.........  .......+++..+++.+++.. +......||+|+.|++....++..-.+             
T Consensus        91 ~t~~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~-------------  155 (213)
T cd03262          91 LTVLENITLAPIKVKG--MSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPK-------------  155 (213)
T ss_pred             CcHHHHHHhHHHHhcC--CCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCC-------------
Confidence            1111221110000000  001123445667777788854 456668999999999886654443111             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                              -+..+|+....++.+.+.|.+.|.+.+
T Consensus       156 --------llllDEP~~~LD~~~~~~l~~~l~~~~  182 (213)
T cd03262         156 --------VMLFDEPTSALDPELVGEVLDVMKDLA  182 (213)
T ss_pred             --------EEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence                    244667777777888888988888764

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.81  E-value=3.3e-09  Score=95.97  Aligned_cols=160  Identities=11%  Similarity=0.098  Sum_probs=92.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC-c
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-P   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-~   90 (299)
                      ++|.+.+++.++|.||||||||||+++|++.+.+  +.+.+++.++....    ...+..+..  ....+.++..... .
T Consensus        43 is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~----~~~~~~~~~--~~i~~v~q~~~~~~~  116 (269)
T cd03294          43 VSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMS----RKELRELRR--KKISMVFQSFALLPH  116 (269)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccC----hhhhhhhhc--CcEEEEecCcccCCC
Confidence            5677899999999999999999999999998754  55667765543210    011111000  0001111111111 0


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+.. ......  .......+++..+++.+++.. +......||+|+.|+++...++..-.+             
T Consensus       117 ~tv~e~l~~-~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~-------------  180 (269)
T cd03294         117 RTVLENVAF-GLEVQG--VPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPD-------------  180 (269)
T ss_pred             CcHHHHHHH-HHHhcC--CCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCC-------------
Confidence            111121110 000000  011223456667788888854 456668999999999987665543111             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                              -+..+|+....++.+.+.|.+.|.+.
T Consensus       181 --------illLDEPt~~LD~~~~~~l~~~l~~~  206 (269)
T cd03294         181 --------ILLMDEAFSALDPLIRREMQDELLRL  206 (269)
T ss_pred             --------EEEEcCCCccCCHHHHHHHHHHHHHH
Confidence                    24466777788888888888888776

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=98.81  E-value=3e-09  Score=99.97  Aligned_cols=157  Identities=15%  Similarity=0.199  Sum_probs=91.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.++|.||||||||||+|+|++...  .+.+.+++.++.....  ..+.+..+|+          .....+.
T Consensus        21 isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~~v~Q----------~~~l~p~   88 (353)
T PRK10851         21 ISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVGFVFQ----------HYALFRH   88 (353)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEEEEec----------CcccCCC
Confidence            567789999999999999999999999999765  4567777766542100  0001111111          1111111


Q ss_pred             -hhhHHHhhcCccchhhcCC--CccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 -ALRETIVEVPNITWEDIGG--LEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        92 -~~~~~l~~l~~~l~~~~~r--~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                       ...+.+. +.........+  .....+|+..+++.+++.. +.++...||||+.|++....++..-.+           
T Consensus        89 ~tv~eni~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~-----------  156 (353)
T PRK10851         89 MTVFDNIA-FGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQ-----------  156 (353)
T ss_pred             CcHHHHHH-hhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC-----------
Confidence             1111111 11000000001  1223457778888888854 456678999999999887665543111           


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                .+..+|+....++-+.+.+.+.|++.+
T Consensus       157 ----------llLLDEP~s~LD~~~r~~l~~~L~~l~  183 (353)
T PRK10851        157 ----------ILLLDEPFGALDAQVRKELRRWLRQLH  183 (353)
T ss_pred             ----------EEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence                      244566666677777777777776653

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.80  E-value=5.3e-09  Score=95.58  Aligned_cols=161  Identities=10%  Similarity=0.092  Sum_probs=91.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KSS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~~   89 (299)
                      ++|.+.+++.++|.||||||||||+++|++.+.  .+.+.+++.++.....   ......+..   ...+..+..  ..-
T Consensus        25 vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~---~~~~~~~~~---~ig~v~q~~~~~l~   98 (288)
T PRK13643         25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSK---QKEIKPVRK---KVGVVFQFPESQLF   98 (288)
T ss_pred             eEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccc---cccHHHHHh---hEEEEecCcchhcc
Confidence            667789999999999999999999999999775  4667777766532100   000111110   001111110  000


Q ss_pred             chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-HHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-NYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                      .....+.+...+.   ..-....+...|+..+++.+++ ..+ .+....||+|++|+++...++..-.+           
T Consensus        99 ~~tv~~~l~~~~~---~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~-----------  164 (288)
T PRK13643         99 EETVLKDVAFGPQ---NFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPE-----------  164 (288)
T ss_pred             cchHHHHHHhHHH---HcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCC-----------
Confidence            0111122110000   0000112334566777888888 344 45558899999999987766544222           


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                -+..+|+....++-+...|.+.|++++
T Consensus       165 ----------illLDEPt~gLD~~~~~~l~~~l~~l~  191 (288)
T PRK13643        165 ----------VLVLDEPTAGLDPKARIEMMQLFESIH  191 (288)
T ss_pred             ----------EEEEECCccCCCHHHHHHHHHHHHHHH
Confidence                      233556666667777778877777653

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=98.80  E-value=7.5e-09  Score=93.40  Aligned_cols=159  Identities=11%  Similarity=0.098  Sum_probs=92.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC-Cc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS-SP   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~-~~   90 (299)
                      ++|.+.+++.++|.||||||||||+++|++...  .+.+.+++.++...    ....++      ....+.++.... ..
T Consensus        30 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----~~~~~~------~~i~~v~q~~~~~~~   99 (265)
T PRK10575         30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESW----SSKAFA------RKVAYLPQQLPAAEG   99 (265)
T ss_pred             eeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhC----CHHHHh------hheEEeccCCCCCCC
Confidence            567789999999999999999999999999765  46667776554321    011111      001122211111 11


Q ss_pred             hhhhHHHhhcCccchhhcCCC-ccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVPNITWEDIGGL-EGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~-p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                      ....+.+.............. ....+++..+++.+++.. +......||+|+.++++...++..-.+            
T Consensus       100 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~------------  167 (265)
T PRK10575        100 MTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSR------------  167 (265)
T ss_pred             ccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCC------------
Confidence            112222221100000000001 123456667778888854 456668899999999987665543221            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                               .+..+|+....++.+.+.|.+.|.+.
T Consensus       168 ---------lllLDEPt~~LD~~~~~~~~~~l~~l  193 (265)
T PRK10575        168 ---------CLLLDEPTSALDIAHQVDVLALVHRL  193 (265)
T ss_pred             ---------EEEEcCCcccCCHHHHHHHHHHHHHH
Confidence                     24466677777788888888888765

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=98.80  E-value=3.2e-09  Score=90.91  Aligned_cols=158  Identities=11%  Similarity=0.124  Sum_probs=89.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~   89 (299)
                      ++|.+.+++.++|.||||||||||+++|++...+  +.+.+++.++...  .   .....+..   ...+.++...  ..
T Consensus        11 vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~--~---~~~~~~~~---~i~~~~q~~~~~~~   82 (190)
T TIGR01166        11 LNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYS--R---KGLLERRQ---RVGLVFQDPDDQLF   82 (190)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEcccc--c---cchHHHHh---hEEEEecChhhccc
Confidence            5678899999999999999999999999997654  5566666554210  0   00001000   0011111110  00


Q ss_pred             chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                      .....+.+.. ......  .......+++..+++.+++.. +.+....||+|++|+++...++..-.+            
T Consensus        83 ~~tv~~nl~~-~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~------------  147 (190)
T TIGR01166        83 AADVDQDVAF-GPLNLG--LSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPD------------  147 (190)
T ss_pred             cccHHHHHHH-HHHHcC--CCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCC------------
Confidence            0111122110 000000  001122345667777888854 455668899999999987665443111            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                               .+..+|+....++.+.+.|.+.|++.
T Consensus       148 ---------llllDEPt~~LD~~~~~~~~~~l~~~  173 (190)
T TIGR01166       148 ---------VLLLDEPTAGLDPAGREQMLAILRRL  173 (190)
T ss_pred             ---------EEEEcCCcccCCHHHHHHHHHHHHHH
Confidence                     24466777777788888888888765

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=98.80  E-value=5.8e-09  Score=90.74  Aligned_cols=156  Identities=10%  Similarity=0.105  Sum_probs=92.9

Q ss_pred             hhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773         13 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP   90 (299)
Q Consensus        13 ~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~   90 (299)
                      -++|.+.+++.++|.||||+|||||+++|++...+  +.+.+++.++...    ...  +      +...+.++......
T Consensus        16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~----~~~--~------~~i~~~~q~~~~~~   83 (211)
T cd03298          16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAA----PPA--D------RPVSMLFQENNLFA   83 (211)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcC----CHh--H------ccEEEEecccccCC
Confidence            46788999999999999999999999999998754  5566666554321    000  0      00011111111111


Q ss_pred             -hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 -SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        91 -~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                       ....+.+.. ...  ..........+++..+++.+++.. +......||+|++++++...++..-.+            
T Consensus        84 ~~tv~enl~~-~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~------------  148 (211)
T cd03298          84 HLTVEQNVGL-GLS--PGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKP------------  148 (211)
T ss_pred             CCcHHHHHhc-ccc--cccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCC------------
Confidence             111122210 000  000001123445667788888854 456668999999999987665543211            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                               .+..+|+....++.+.+.|.+.|++..
T Consensus       149 ---------llllDEP~~~LD~~~~~~l~~~l~~~~  175 (211)
T cd03298         149 ---------VLLLDEPFAALDPALRAEMLDLVLDLH  175 (211)
T ss_pred             ---------EEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence                     244667777778888888888887763

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.80  E-value=4.1e-09  Score=94.29  Aligned_cols=161  Identities=11%  Similarity=0.171  Sum_probs=88.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.||||+|||||+++|++.+.       .+.+.+++.++.....  .....+   .   ...+.++..
T Consensus        23 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~--~~~~~~---~---~i~~~~q~~   94 (253)
T PRK14267         23 VDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV--DPIEVR---R---EVGMVFQYP   94 (253)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc--ChHHHh---h---ceeEEecCC
Confidence            467788999999999999999999999999864       4567777765531000  000110   0   001111111


Q ss_pred             CCCc-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSP-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIET  160 (299)
Q Consensus        87 ~~~~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~  160 (299)
                      .... ....+.+... ...............++..+++.+++     ..+......||+|++|+++...++..-.+    
T Consensus        95 ~~~~~~tv~enl~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~----  169 (253)
T PRK14267         95 NPFPHLTIYDNVAIG-VKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPK----  169 (253)
T ss_pred             ccCCCCcHHHHHHHH-HHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCC----
Confidence            1111 1111222100 00000000011223445556666654     23455667899999999887665543111    


Q ss_pred             HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                       .+..+|+....++.+.+.+.+.|++..
T Consensus       170 -----------------llllDEP~~~LD~~~~~~l~~~l~~~~  196 (253)
T PRK14267        170 -----------------ILLMDEPTANIDPVGTAKIEELLFELK  196 (253)
T ss_pred             -----------------EEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence                             244566667777778888888887763

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=98.79  E-value=6.8e-09  Score=91.72  Aligned_cols=155  Identities=12%  Similarity=0.197  Sum_probs=91.5

Q ss_pred             hhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773         13 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP   90 (299)
Q Consensus        13 ~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~   90 (299)
                      -++|.+.+++.++|.||||||||||+++|++...  .+.+.+++.++...    ...  +      ....+.++......
T Consensus        17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----~~~--~------~~i~~~~q~~~~~~   84 (232)
T PRK10771         17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTT----PPS--R------RPVSMLFQENNLFS   84 (232)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcC----Chh--h------ccEEEEeccccccc
Confidence            4678899999999999999999999999999765  45566776554321    000  0      00011111111111


Q ss_pred             -hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 -SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        91 -~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                       ....+.+. +..  ...........+++..+++.+++.. +.+....||+|++++++...++..-.+            
T Consensus        85 ~~tv~e~l~-~~~--~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~------------  149 (232)
T PRK10771         85 HLTVAQNIG-LGL--NPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQP------------  149 (232)
T ss_pred             CCcHHHHHh-ccc--ccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCC------------
Confidence             11122221 110  0000001223456777888888855 456668999999999887665543221            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                               -+..+|+....++.+.+.|.+.|.+.
T Consensus       150 ---------lllLDEP~~gLD~~~~~~~~~~l~~~  175 (232)
T PRK10771        150 ---------ILLLDEPFSALDPALRQEMLTLVSQV  175 (232)
T ss_pred             ---------EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence                     23355666667777777777777665

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.79  E-value=3.7e-09  Score=94.00  Aligned_cols=157  Identities=18%  Similarity=0.230  Sum_probs=90.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...+  +.+.+++.++...    ....++   .   ...+.++...... 
T Consensus        20 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----~~~~~~---~---~i~~~~q~~~~~~~   89 (242)
T cd03295          20 LNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQ----DPVELR---R---KIGYVIQQIGLFPH   89 (242)
T ss_pred             eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcC----ChHHhh---c---ceEEEccCccccCC
Confidence            5677899999999999999999999999997654  5566666554321    001111   0   0012221111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH---HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN---YIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~---~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                      ....+.+... .....  .......+++..+++.+++.   ........||+|+.|+++...++..-.+           
T Consensus        90 ~tv~e~l~~~-~~~~~--~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~-----------  155 (242)
T cd03295          90 MTVEENIALV-PKLLK--WPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPP-----------  155 (242)
T ss_pred             CcHHHHHHHH-HHHcC--CCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCC-----------
Confidence            1111222110 00000  00122345666777777775   3455668899999999887655443111           


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                .+..+|+....++.+.+.|.+.|.+.+
T Consensus       156 ----------llllDEPt~~LD~~~~~~l~~~L~~~~  182 (242)
T cd03295         156 ----------LLLMDEPFGALDPITRDQLQEEFKRLQ  182 (242)
T ss_pred             ----------EEEecCCcccCCHHHHHHHHHHHHHHH
Confidence                      244566677777788888888887763

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=98.78  E-value=3.7e-09  Score=97.51  Aligned_cols=154  Identities=16%  Similarity=0.173  Sum_probs=94.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.||||+|||||+++|++.+.+  +.+.+++.++...    . ..++      +...+.++...... 
T Consensus        26 vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~----~-~~~~------~~ig~v~q~~~~~~~   94 (306)
T PRK13537         26 LSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSR----A-RHAR------QRVGVVPQFDNLDPD   94 (306)
T ss_pred             ceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccc----h-HHHH------hcEEEEeccCcCCCC
Confidence            5678899999999999999999999999998764  5566776655321    0 0110      11122222221111 


Q ss_pred             hhhhHHHhhcCccchhhcCCC--ccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVPNITWEDIGGL--EGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~--p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                      ....+.+....     .+...  .+...|+..+++.+++... .+....||+|+.|+++...++..-.            
T Consensus        95 ~tv~e~l~~~~-----~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P------------  157 (306)
T PRK13537         95 FTVRENLLVFG-----RYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDP------------  157 (306)
T ss_pred             CcHHHHHHHHH-----HHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCC------------
Confidence            12222222110     01111  2234566677778888544 4556899999999998766554311            


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                               ..+..+|+....++.+...|.+.|++.+
T Consensus       158 ---------~lllLDEPt~gLD~~~~~~l~~~l~~l~  185 (306)
T PRK13537        158 ---------DVLVLDEPTTGLDPQARHLMWERLRSLL  185 (306)
T ss_pred             ---------CEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence                     1245667777888888889988888864

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.78  E-value=2.3e-09  Score=97.03  Aligned_cols=156  Identities=12%  Similarity=0.145  Sum_probs=90.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KSS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~~   89 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...  .+.+.+++.++...    ....++.      ...+.++..  ...
T Consensus        28 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~----~~~~~~~------~i~~v~q~~~~~~~   97 (271)
T PRK13632         28 VSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKE----NLKEIRK------KIGIIFQNPDNQFI   97 (271)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcC----CHHHHhc------ceEEEEeCHHHhcC
Confidence            457789999999999999999999999999865  45666776554321    0011110      001111110  000


Q ss_pred             chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                      .....+.+.. .  .............++..+++.+++.. +......||+|++|+++...++..-.+            
T Consensus        98 ~~tv~enl~~-~--~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~------------  162 (271)
T PRK13632         98 GATVEDDIAF-G--LENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPE------------  162 (271)
T ss_pred             cccHHHHHHh-H--HHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCC------------
Confidence            0111122210 0  00000011123345667788888854 456668999999999887665543221            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                               .+..+|+....++.+.+.|.+.|++.
T Consensus       163 ---------lllLDEP~~gLD~~~~~~l~~~l~~~  188 (271)
T PRK13632        163 ---------IIIFDESTSMLDPKGKREIKKIMVDL  188 (271)
T ss_pred             ---------EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence                     24456666777778888888888765

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.78  E-value=3e-09  Score=93.20  Aligned_cols=151  Identities=15%  Similarity=0.172  Sum_probs=90.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...+  +.+.+++.++...     ...+          .+.++...... 
T Consensus        23 vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-----~~~i----------~~v~q~~~~~~~   87 (220)
T cd03293          23 ISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGP-----GPDR----------GYVFQQDALLPW   87 (220)
T ss_pred             eeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-----cCcE----------EEEecccccccC
Confidence            4677889999999999999999999999997653  5566666544210     0000          11111000000 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+... .....  .......+++..+++.+++.. +.+....||+|++|++....++..-.              
T Consensus        88 ~tv~e~l~~~-~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p--------------  150 (220)
T cd03293          88 LTVLDNVALG-LELQG--VPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDP--------------  150 (220)
T ss_pred             CCHHHHHHHH-HHHcC--CCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCC--------------
Confidence            0111111100 00000  001223456667788888854 45666899999999988766554311              


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                             ..+..+|+....++.+.+.|.+.|++.
T Consensus       151 -------~lllLDEPt~~LD~~~~~~~~~~l~~~  177 (220)
T cd03293         151 -------DVLLLDEPFSALDALTREQLQEELLDI  177 (220)
T ss_pred             -------CEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence                   134567777888889999999988775

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=98.78  E-value=4.5e-09  Score=92.72  Aligned_cols=158  Identities=13%  Similarity=0.144  Sum_probs=90.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|+||||||||||+++|++...  .+.+.+++.++...    .....   ..  ....+.++...... 
T Consensus        19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----~~~~~---~~--~~i~~~~q~~~~~~~   89 (232)
T cd03218          19 VSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKL----PMHKR---AR--LGIGYLPQEASIFRK   89 (232)
T ss_pred             ceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccC----CHhHH---Hh--ccEEEecCCcccccc
Confidence            467788999999999999999999999999765  35566666544221    00000   00  00011111111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+... .....  .......+++..+++.+++... ......||+|+.|++....++..-.+             
T Consensus        90 ~tv~~~l~~~-~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~-------------  153 (232)
T cd03218          90 LTVEENILAV-LEIRG--LSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPK-------------  153 (232)
T ss_pred             CcHHHHHHHH-HHhcC--CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence            1112222110 00000  0012234466677788888554 45567899999999887655443111             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                              .+..+|+....++.+.+.|.+.|++..
T Consensus       154 --------llllDEPt~~LD~~~~~~~~~~l~~~~  180 (232)
T cd03218         154 --------FLLLDEPFAGVDPIAVQDIQKIIKILK  180 (232)
T ss_pred             --------EEEecCCcccCCHHHHHHHHHHHHHHH
Confidence                    244667777777888888888887663

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.78  E-value=6e-09  Score=95.20  Aligned_cols=161  Identities=11%  Similarity=0.105  Sum_probs=92.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~   89 (299)
                      ++|.+.+|+.++|.||||+|||||+++|++.+.+  +.+.+++.++...........++   .   ...+.++...  ..
T Consensus        26 vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~---~---~ig~v~q~~~~~~~   99 (287)
T PRK13641         26 ISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLR---K---KVSLVFQFPEAQLF   99 (287)
T ss_pred             eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHH---h---ceEEEEeChhhhhc
Confidence            4577899999999999999999999999997754  56777776553210000000110   0   0011111100  00


Q ss_pred             chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-H-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-Y-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                      .....+.+.. ...  .......+..+|+..+++.+++. . ..+....||+|++|+++...++..-.+           
T Consensus       100 ~~tv~e~l~~-~~~--~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~-----------  165 (287)
T PRK13641        100 ENTVLKDVEF-GPK--NFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPE-----------  165 (287)
T ss_pred             cchHHHHHHH-HHH--HcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCC-----------
Confidence            0111121110 000  00001122345677788888884 4 456668999999999987665543221           


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                .+..+|+....++.+.+.|.+.|++.+
T Consensus       166 ----------lLlLDEPt~gLD~~~~~~l~~~l~~l~  192 (287)
T PRK13641        166 ----------ILCLDEPAAGLDPEGRKEMMQLFKDYQ  192 (287)
T ss_pred             ----------EEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence                      244667777777888888888887764

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=98.78  E-value=1.3e-08  Score=89.01  Aligned_cols=152  Identities=13%  Similarity=0.163  Sum_probs=87.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...  .+.+.+++.++...    .....+      ....+.++.......
T Consensus        23 i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~----~~~~~~------~~i~~~~q~~~~~~~   92 (220)
T cd03245          23 VSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQL----DPADLR------RNIGYVPQDVTLFYG   92 (220)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHC----CHHHHH------hhEEEeCCCCccccc
Confidence            467789999999999999999999999999765  35566665544221    000010      001122211111111


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHHh------------cCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKV------------TNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~------------t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      ...+.+.. .       .. ....+++..+++.+++..+..+            ...||+|+++++....++..-.+   
T Consensus        93 tv~e~l~~-~-------~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~---  160 (220)
T cd03245          93 TLRDNITL-G-------AP-LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP---  160 (220)
T ss_pred             hHHHHhhc-C-------CC-CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC---
Confidence            11111110 0       00 1112344455555666544332            25899999999887665543221   


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P  205 (299)
                                        -+..+|+....++.+.+.|.+.|++...
T Consensus       161 ------------------llllDEPt~~LD~~~~~~l~~~l~~~~~  188 (220)
T cd03245         161 ------------------ILLLDEPTSAMDMNSEERLKERLRQLLG  188 (220)
T ss_pred             ------------------EEEEeCccccCCHHHHHHHHHHHHHhcC
Confidence                              2446677778888899999999988753

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.78  E-value=1e-08  Score=101.32  Aligned_cols=151  Identities=15%  Similarity=0.220  Sum_probs=87.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      .++.+++|+.++|+||+|||||||++.|++...+  +.+.+++.++... .    ..++..+      .+.++....-..
T Consensus       354 isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~----~~lr~~i------~~V~Q~~~lF~~  422 (529)
T TIGR02868       354 VSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-Q----DELRRRI------SVFAQDAHLFDT  422 (529)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-H----HHHHhhe------EEEccCcccccc
Confidence            4567899999999999999999999999997764  5677777665421 1    1111100      111111111112


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH------------HHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY------------IAKVTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~------------LA~~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      +.++.+.-         .+....++++...++..++++            +...-..+||||+|+++.+.++..-.+   
T Consensus       423 TI~eNI~~---------g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~---  490 (529)
T TIGR02868       423 TVRDNLRL---------GRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAP---  490 (529)
T ss_pred             cHHHHHhc---------cCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCC---
Confidence            22222211         000012233444444444422            223335699999999987665543111   


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P  205 (299)
                                        -+..+|+....+.-|.+.+.+++.+..+
T Consensus       491 ------------------iliLDE~TSaLD~~te~~I~~~l~~~~~  518 (529)
T TIGR02868       491 ------------------ILLLDEPTEHLDAGTESELLEDLLAALS  518 (529)
T ss_pred             ------------------EEEEeCCcccCCHHHHHHHHHHHHHhcC
Confidence                              2446778888888899999999987643

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.78  E-value=6.7e-09  Score=92.61  Aligned_cols=159  Identities=12%  Similarity=0.201  Sum_probs=89.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh-----cCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS   88 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l-----~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~   88 (299)
                      ++|.+.+++.++|.||||+|||||+++|++..     ..+.+.+++.++...    .....+      ....+.++....
T Consensus        21 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~----~~~~~~------~~i~~~~q~~~l   90 (246)
T PRK14269         21 INMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQ----DVVALR------KNVGMVFQQPNV   90 (246)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccC----CHHHHh------hhEEEEecCCcc
Confidence            46778999999999999999999999999975     246677777665321    000111      000111111111


Q ss_pred             CchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH----H-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         89 SPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN----Y-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIR  163 (299)
Q Consensus        89 ~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~----~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~  163 (299)
                      -.....+.+.. ................++..+++.+++.    . +......+|+|+.++++...++..-.+       
T Consensus        91 ~~~tv~eni~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~-------  162 (246)
T PRK14269         91 FVKSIYENISY-APKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPK-------  162 (246)
T ss_pred             ccccHHHHhhh-HHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCC-------
Confidence            11111111110 0000000000112334556677777772    2 334557899999999887665543221       


Q ss_pred             HHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        164 REREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                    -+..+|+....++.+...|.+.|.+.+
T Consensus       163 --------------lllLDEP~~~LD~~~~~~l~~~l~~~~  189 (246)
T PRK14269        163 --------------LLLLDEPTSALDPISSGVIEELLKELS  189 (246)
T ss_pred             --------------EEEEcCCcccCCHHHHHHHHHHHHHHh
Confidence                          244666777777788888888887764

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.77  E-value=6.7e-09  Score=93.96  Aligned_cols=161  Identities=11%  Similarity=0.062  Sum_probs=91.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.++|.||||||||||+++|++...  .+.+.+++.++....    ...+..+.   ....+.++.......
T Consensus        26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~----~~~~~~~~---~~i~~v~q~~~~~~~   98 (269)
T PRK11831         26 ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMS----RSRLYTVR---KRMSMLFQSGALFTD   98 (269)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccC----hhhHHHHh---hcEEEEecccccCCC
Confidence            567889999999999999999999999999865  455666665443210    01110000   000111111111111


Q ss_pred             -hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         92 -ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        92 -~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                       ...+.+.........  ........++..+++.+++..+ ......||+|++|+++...++..-.+             
T Consensus        99 ~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~-------------  163 (269)
T PRK11831         99 MNVFDNVAYPLREHTQ--LPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPD-------------  163 (269)
T ss_pred             CCHHHHHHHHHHHccC--CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence             111211110000000  0011223455667778888554 45568899999999987665543211             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                              .+..+|+....++.+.+.|.+.|++..
T Consensus       164 --------lllLDEPt~~LD~~~~~~l~~~l~~~~  190 (269)
T PRK11831        164 --------LIMFDEPFVGQDPITMGVLVKLISELN  190 (269)
T ss_pred             --------EEEEcCCCccCCHHHHHHHHHHHHHHH
Confidence                    244667777788888888888888763

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.77  E-value=1.7e-09  Score=98.74  Aligned_cols=158  Identities=11%  Similarity=0.118  Sum_probs=90.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~   89 (299)
                      ++|.+.+|+.++|.||||||||||+++|++.+.  .+.+.+++.++.....  ....++.      ...+.++...  ..
T Consensus        26 vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~--~~~~~~~------~ig~v~q~~~~~~~   97 (287)
T PRK13637         26 VNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKV--KLSDIRK------KVGLVFQYPEYQLF   97 (287)
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCc--cHHHHhh------ceEEEecCchhccc
Confidence            467789999999999999999999999999775  4567777765532100  0001110      0011111110  00


Q ss_pred             chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH--H-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN--Y-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRER  166 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~--~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~  166 (299)
                      .....+.+....   ...-....+..+++..+++.+++.  . .......||||++|+++...++..-.+          
T Consensus        98 ~~tv~e~l~~~~---~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~----------  164 (287)
T PRK13637         98 EETIEKDIAFGP---INLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPK----------  164 (287)
T ss_pred             cccHHHHHHhHH---HHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCC----------
Confidence            111112221000   000000112345667788888884  3 455668999999999987765544222          


Q ss_pred             HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                 -+..+|+....++.+...|.+.|++.
T Consensus       165 -----------llllDEPt~gLD~~~~~~l~~~l~~l  190 (287)
T PRK13637        165 -----------ILILDEPTAGLDPKGRDEILNKIKEL  190 (287)
T ss_pred             -----------EEEEECCccCCCHHHHHHHHHHHHHH
Confidence                       23455666666777777777777665

>KOG0732|consensus

Probab=98.77  E-value=1.6e-09  Score=111.33  Aligned_cols=56  Identities=16%  Similarity=0.172  Sum_probs=49.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773        205 RSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       205 PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      -+|.|+|||||+.+.+.++++|-+  ||.|||.|-+ ++--.-|+||+|||||||||.-
T Consensus       260 ~~v~fd~vggl~~~i~~LKEmVl~--PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~a  316 (1080)
T KOG0732|consen  260 SSVGFDSVGGLENYINQLKEMVLL--PLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMA  316 (1080)
T ss_pred             cccCccccccHHHHHHHHHHHHHh--HhhhhhHhhhcccCCCcceeecCCCCCchhHHH
Confidence            359999999999999999999999  9999998874 4445558999999999999864

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.77  E-value=8.6e-09  Score=92.67  Aligned_cols=163  Identities=14%  Similarity=0.147  Sum_probs=92.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC-Cc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS-SP   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~-~~   90 (299)
                      ++|.+.+++.++|.|+||||||||+++|++...  .+.+.+++.++...    ....++.      ...+.++.... ..
T Consensus        21 is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~----~~~~~~~------~i~~~~q~~~~~~~   90 (258)
T PRK13548         21 VSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADW----SPAELAR------RRAVLPQHSSLSFP   90 (258)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccC----CHHHhhh------heEEEccCCcCCCC
Confidence            457788999999999999999999999999765  45566666544221    0011110      01122211111 11


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+.......   ........+++..+++.+++.. +......||+|+.|+++...++....|.            
T Consensus        91 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~------------  155 (258)
T PRK13548         91 FTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEP------------  155 (258)
T ss_pred             CCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccc------------
Confidence            11222221100000   0001122345667777788854 4566689999999999877655421000            


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                         ......+..+|+....++.+.+.|.+.|+++.
T Consensus       156 ---~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~  187 (258)
T PRK13548        156 ---DGPPRWLLLDEPTSALDLAHQHHVLRLARQLA  187 (258)
T ss_pred             ---CCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence               00011345667777778888888888887764

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=98.77  E-value=6e-09  Score=92.51  Aligned_cols=161  Identities=18%  Similarity=0.166  Sum_probs=90.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh----cCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l----~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~   89 (299)
                      ++|.+.+++.++|.||||||||||+++|++..    ..+.+.+++.++.....   ....+.      ...+.++.....
T Consensus        19 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~---~~~~~~------~i~~v~q~~~~~   89 (243)
T TIGR01978        19 VNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEP---DERARA------GLFLAFQYPEEI   89 (243)
T ss_pred             cceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCH---HHhhcc------ceEeeecccccc
Confidence            56788999999999999999999999999973    34667777655432100   000000      001111111111


Q ss_pred             c-hhhhHHHhhcCccchhh----cCCCccHHHHHhhhcccCCHH-HHH-HhcC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 P-SALRETIVEVPNITWED----IGGLEGVKRELQELVQDVDLN-YIA-KVTN-GFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        90 ~-~~~~~~l~~l~~~l~~~----~~r~p~~~~R~~~l~~~v~l~-~LA-~~t~-glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      . ....+.+..........    .....+..+++..+++.+++. .+. .... .||+|++|+++...++..-.+     
T Consensus        90 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~-----  164 (243)
T TIGR01978        90 PGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPK-----  164 (243)
T ss_pred             CCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCC-----
Confidence            1 11111111100000000    000112245666777778884 444 3444 599999999987665543211     


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                      .+..+|+....++.+.+.|.+.|++.+
T Consensus       165 ----------------llllDEPt~~LD~~~~~~l~~~l~~~~  191 (243)
T TIGR01978       165 ----------------LAILDEIDSGLDIDALKIVAEGINRLR  191 (243)
T ss_pred             ----------------EEEecCCcccCCHHHHHHHHHHHHHHH
Confidence                            245667777888888999999888764

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.77  E-value=7.1e-09  Score=90.00  Aligned_cols=151  Identities=17%  Similarity=0.158  Sum_probs=90.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...+  +.+.+++.++...         .....   ...+.++...... 
T Consensus        19 ~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~---------~~~~~---~i~~~~q~~~~~~~   86 (208)
T cd03268          19 ISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN---------IEALR---RIGALIEAPGFYPN   86 (208)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch---------HHHHh---hEEEecCCCccCcc
Confidence            4677889999999999999999999999997653  4556665443210         11100   0112222111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+... ..    ....  ..+++..+++.+++.. +.+....+|+|+.++++...++..-.+             
T Consensus        87 ~tv~e~l~~~-~~----~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~-------------  146 (208)
T cd03268          87 LTARENLRLL-AR----LLGI--RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPD-------------  146 (208)
T ss_pred             CcHHHHHHHH-HH----hcCC--cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence            1111221110 00    0001  2445666777788854 456668899999999887665443111             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                              .+..+|+....++.+.+.|.+.|.+.+
T Consensus       147 --------llllDEPt~~LD~~~~~~l~~~l~~~~  173 (208)
T cd03268         147 --------LLILDEPTNGLDPDGIKELRELILSLR  173 (208)
T ss_pred             --------EEEECCCcccCCHHHHHHHHHHHHHHH
Confidence                    244667777788888889988888764

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.77  E-value=3.1e-09  Score=94.01  Aligned_cols=161  Identities=13%  Similarity=0.157  Sum_probs=91.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.||||||||||+++|++.+.  .+.+.+++.++...    .....   ..  ....+.++...... 
T Consensus        19 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----~~~~~---~~--~~i~~v~q~~~l~~~   89 (236)
T cd03219          19 VSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGL----PPHEI---AR--LGIGRTFQIPRLFPE   89 (236)
T ss_pred             ceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCC----CHHHH---Hh--cCEEEEecccccccC
Confidence            467789999999999999999999999999765  35566666554321    00000   00  00011111111111 


Q ss_pred             hhhhHHHhhcCccc-hhhcC------CCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVPNIT-WEDIG------GLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEI  162 (299)
Q Consensus        91 ~~~~~~l~~l~~~l-~~~~~------r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~  162 (299)
                      ....+.+....... ...+.      ......+++..+++.+++.. +......||+|++|+++...++..-.+      
T Consensus        90 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~------  163 (236)
T cd03219          90 LTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPK------  163 (236)
T ss_pred             CCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCC------
Confidence            11122221100000 00000      01223446667777888854 455668899999999887665543111      


Q ss_pred             HHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        163 RREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                     .+..+|+....++.+.+.|.+.|++..
T Consensus       164 ---------------llllDEPt~~LD~~~~~~l~~~l~~~~  190 (236)
T cd03219         164 ---------------LLLLDEPAAGLNPEETEELAELIRELR  190 (236)
T ss_pred             ---------------EEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence                           244667777778888888988887764

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.76  E-value=2.2e-09  Score=97.48  Aligned_cols=156  Identities=12%  Similarity=0.113  Sum_probs=90.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~   89 (299)
                      ++|.+.+|+.++|+|+||+|||||+++|++...+  +.+.+++.++...    ....+   ...   ..+.++...  ..
T Consensus        23 vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----~~~~~---~~~---i~~v~q~~~~~~~   92 (277)
T PRK13652         23 INFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKE----NIREV---RKF---VGLVFQNPDDQIF   92 (277)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcC----CHHHH---Hhh---eEEEecCcccccc
Confidence            5677899999999999999999999999997654  5566676554321    11111   110   011111100  00


Q ss_pred             chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                      .....+.+.. ... ... .......+++..+++.+++.. +......||+|+++++....++..-.+            
T Consensus        93 ~~tv~~~l~~-~~~-~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~------------  157 (277)
T PRK13652         93 SPTVEQDIAF-GPI-NLG-LDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQ------------  157 (277)
T ss_pred             cccHHHHHHh-HHH-HcC-CCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC------------
Confidence            1111122210 000 000 011123345667788888854 456668999999999887655443221            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                               .+..+++....++.+.+.|.+.|++.
T Consensus       158 ---------llilDEPt~gLD~~~~~~l~~~l~~l  183 (277)
T PRK13652        158 ---------VLVLDEPTAGLDPQGVKELIDFLNDL  183 (277)
T ss_pred             ---------EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence                     24466777777888888888888765

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.76  E-value=8.5e-09  Score=91.99  Aligned_cols=160  Identities=13%  Similarity=0.246  Sum_probs=90.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.|+||||||||+++|++...       .+.+.+++.++....  .....++.      ...+.++..
T Consensus        20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~--~~~~~~~~------~i~~v~q~~   91 (247)
T TIGR00972        20 INLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK--IDVVELRR------RVGMVFQKP   91 (247)
T ss_pred             eeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccc--cchHHHHh------heEEEecCc
Confidence            577889999999999999999999999999774       445666665543210  00000100      001111111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-----HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-----YIAKVTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-----~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      ........+.+.. ...... ........+++..+++.+++.     .+......||+|++|+++...++..-.+     
T Consensus        92 ~~~~~tv~e~l~~-~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~-----  164 (247)
T TIGR00972        92 NPFPMSIYDNIAY-GPRLHG-IKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPE-----  164 (247)
T ss_pred             ccCCCCHHHHHHh-HHHhcC-CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCC-----
Confidence            1111111111110 000000 000112234556667777763     3456668999999999887665543111     


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                      -+..+|+....++.+.+.|.+.|++.+
T Consensus       165 ----------------llllDEPt~~LD~~~~~~l~~~l~~~~  191 (247)
T TIGR00972       165 ----------------VLLLDEPTSALDPIATGKIEELIQELK  191 (247)
T ss_pred             ----------------EEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence                            244667777778888888988888764

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.76  E-value=7e-09  Score=93.14  Aligned_cols=151  Identities=15%  Similarity=0.154  Sum_probs=90.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.||||||||||+++|++...  .+.+.+++.++...  .   ..+          .+.++...... 
T Consensus        20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~--~---~~~----------~~v~q~~~~~~~   84 (255)
T PRK11248         20 INLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP--G---AER----------GVVFQNEGLLPW   84 (255)
T ss_pred             eeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC--C---CcE----------EEEeCCCccCCC
Confidence            567789999999999999999999999999865  45566666554321  0   000          11111111000 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+.. ......  .......+++..+++.+++.. +.+....||||+.++++...++..-.              
T Consensus        85 ~tv~e~l~~-~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p--------------  147 (255)
T PRK11248         85 RNVQDNVAF-GLQLAG--VEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANP--------------  147 (255)
T ss_pred             CcHHHHHHh-HHHHcC--CCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCC--------------
Confidence            111111110 000000  001223456677788888854 44566889999999998766554311              


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                             ..+..+|+....++.+.+.|.+.|++.
T Consensus       148 -------~lllLDEPt~~LD~~~~~~l~~~L~~~  174 (255)
T PRK11248        148 -------QLLLLDEPFGALDAFTREQMQTLLLKL  174 (255)
T ss_pred             -------CEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence                   124466777777888888888888775

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=98.76  E-value=1e-08  Score=90.98  Aligned_cols=160  Identities=16%  Similarity=0.169  Sum_probs=92.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.|+||+|||||+++|++...  .+.+.+++.++...    . .....+..   ...+.++...... 
T Consensus        20 ~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----~-~~~~~~~~---~i~~~~q~~~~~~~   91 (240)
T PRK09493         20 IDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDP----K-VDERLIRQ---EAGMVFQQFYLFPH   91 (240)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC----C-hhHHHHhh---ceEEEecccccCCC
Confidence            467788999999999999999999999999765  45566776554321    0 00111110   0011221111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+.........  .......+++..+++.+++.. +......||+|+.++++...++..-.+             
T Consensus        92 ~tv~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~-------------  156 (240)
T PRK09493         92 LTALENVMFGPLRVRG--ASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPK-------------  156 (240)
T ss_pred             CcHHHHHHhHHHHhcC--CCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCC-------------
Confidence            1111222100000000  011223445667788888854 456668899999999987665543111             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                              -+..+|+....++.+.+.|.+.|++.+
T Consensus       157 --------llllDEP~~~LD~~~~~~l~~~l~~~~  183 (240)
T PRK09493        157 --------LMLFDEPTSALDPELRHEVLKVMQDLA  183 (240)
T ss_pred             --------EEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence                    244667777777888888888887663

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.76  E-value=6.4e-09  Score=92.14  Aligned_cols=153  Identities=17%  Similarity=0.218  Sum_probs=89.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC-Cc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS-SP   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~-~~   90 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...+  +.+.+++.++...    ...    .+.   ...+.++.... ..
T Consensus        20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~----~~~----~~~---~i~~~~q~~~~~~~   88 (236)
T TIGR03864        20 VSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRA----PRA----ALA---RLGVVFQQPTLDLD   88 (236)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccC----Chh----hhh---hEEEeCCCCCCccc
Confidence            5677899999999999999999999999997653  5566666554221    000    000   01122211111 11


Q ss_pred             hhhhHHHhhcCccchhhcCCC--ccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVPNITWEDIGGL--EGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~--p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                      ....+.+.. ..    .....  ....+++..+++.+++.. +......||+|++|+++...++..-.+           
T Consensus        89 ~t~~~~l~~-~~----~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~-----------  152 (236)
T TIGR03864        89 LSVRQNLRY-HA----ALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPA-----------  152 (236)
T ss_pred             CcHHHHHHH-HH----HhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCC-----------
Confidence            111122211 00    00011  123345667777778854 445668899999999887665543211           


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                -+..+|+....++.+.+.|.+.|++.
T Consensus       153 ----------llllDEP~~~LD~~~~~~l~~~l~~~  178 (236)
T TIGR03864       153 ----------LLLLDEPTVGLDPASRAAIVAHVRAL  178 (236)
T ss_pred             ----------EEEEcCCccCCCHHHHHHHHHHHHHH
Confidence                      24466677777788888888887765

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=98.76  E-value=7.6e-09  Score=90.02  Aligned_cols=155  Identities=17%  Similarity=0.182  Sum_probs=89.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.++ .++|.||||||||||+++|++.+.+  +.+.+++.++...    . ...+   .   ...+.++...... 
T Consensus        19 vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----~-~~~~---~---~i~~~~q~~~~~~~   86 (211)
T cd03264          19 VSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQ----P-QKLR---R---RIGYLPQEFGVYPN   86 (211)
T ss_pred             eeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccc----h-HHHH---h---heEEecCCCccccc
Confidence            46778888 9999999999999999999997654  5566666544211    0 1110   0   0011121111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+..... ...  ....+..+++..+++.+++.. +......||+|++++++...++..-.+             
T Consensus        87 ~tv~~~l~~~~~-~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~-------------  150 (211)
T cd03264          87 FTVREFLDYIAW-LKG--IPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPS-------------  150 (211)
T ss_pred             CCHHHHHHHHHH-HhC--CCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence            111122111000 000  001123455667778888854 445668899999999987665543111             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                              -+..+|+....++.+.+.+.+.|++.+
T Consensus       151 --------llllDEPt~~LD~~~~~~l~~~l~~~~  177 (211)
T cd03264         151 --------ILIVDEPTAGLDPEERIRFRNLLSELG  177 (211)
T ss_pred             --------EEEEcCCcccCCHHHHHHHHHHHHHHh
Confidence                    244667777778888888988888774

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.76  E-value=9.5e-09  Score=94.04  Aligned_cols=160  Identities=13%  Similarity=0.120  Sum_probs=91.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~   89 (299)
                      ++|.+.+++.++|.||||||||||+++|++...+  +.+.+++.++...........++.      ...+.++...  ..
T Consensus        26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~------~ig~v~q~~~~~l~   99 (290)
T PRK13634         26 VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRK------KVGIVFQFPEHQLF   99 (290)
T ss_pred             EEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHh------hEEEEeeCchhhhh
Confidence            5678899999999999999999999999997654  567777765532100000011110      0011111100  00


Q ss_pred             chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-HH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-YI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                      .....+.+.....   ..-....+..+++..+++.+++. .+ ......||+|++|++....++..-.+           
T Consensus       100 ~~tv~eni~~~~~---~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~-----------  165 (290)
T PRK13634        100 EETVEKDICFGPM---NFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPE-----------  165 (290)
T ss_pred             hhhHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC-----------
Confidence            0111111110000   00000112345677788888884 55 45568899999999887665543221           


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                -+..+|+....++.+...|.+.|+++
T Consensus       166 ----------llllDEPt~~LD~~~~~~l~~~L~~l  191 (290)
T PRK13634        166 ----------VLVLDEPTAGLDPKGRKEMMEMFYKL  191 (290)
T ss_pred             ----------EEEEECCcccCCHHHHHHHHHHHHHH
Confidence                      24456666677777888888777765

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.75  E-value=8.2e-09  Score=87.79  Aligned_cols=123  Identities=13%  Similarity=0.170  Sum_probs=74.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      +++.++++....|+||||+|||||+..+++.+.  .+.+.+++.++.+..    .+.+....      ++..+.......
T Consensus        20 isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~----s~~LAk~l------SILkQ~N~i~~r   89 (252)
T COG4604          20 VSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTP----SKELAKKL------SILKQENHINSR   89 (252)
T ss_pred             ceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCC----hHHHHHHH------HHHHhhchhhhe
Confidence            567889999999999999999999999999876  567888988886542    12221111      222222221111


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHH--HhhhcccCCHHHHHHh-cCCCCHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRE--LQELVQDVDLNYIAKV-TNGFSGADLTEICQR  148 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R--~~~l~~~v~l~~LA~~-t~glSggDl~~Lv~~  148 (299)
                      ...+.+..+-... -..+ .++.+.|  +...++-+++..|..+ -..+|||+.|+...+
T Consensus        90 lTV~dLv~FGRfP-YSqG-Rlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIA  147 (252)
T COG4604          90 LTVRDLVGFGRFP-YSQG-RLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIA  147 (252)
T ss_pred             eEHHHHhhcCCCc-ccCC-CCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhh
Confidence            1223333221100 0112 2333333  3467777888777644 488999999987654

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=4.8e-08  Score=93.93  Aligned_cols=149  Identities=16%  Similarity=0.218  Sum_probs=89.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      .+|.+.+|+.|.|.|++||||||++..|++...+  +.+.+++.++...    .++.+++.+.      +..++...-+.
T Consensus       357 ~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l----~~~~~~e~i~------vl~Qr~hlF~~  426 (573)
T COG4987         357 FNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASL----DEQALRETIS------VLTQRVHLFSG  426 (573)
T ss_pred             cceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhC----ChhhHHHHHh------hhccchHHHHH
Confidence            4566789999999999999999999999997654  5566676666543    2333333221      11111111112


Q ss_pred             hhhHHHhhcCccchhhcCCCcc-HHHHHhhhcccCCHHHHHH------------hcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEG-VKRELQELVQDVDLNYIAK------------VTNGFSGADLTEICQRACKLAIRQSI  158 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~-~~~R~~~l~~~v~l~~LA~------------~t~glSggDl~~Lv~~A~~~a~~r~~  158 (299)
                      +.++.+.-          ..|+ ..+-...++++++++++..            .-+.||||+++++....++..     
T Consensus       427 Tlr~NL~l----------A~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~-----  491 (573)
T COG4987         427 TLRDNLRL----------ANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLH-----  491 (573)
T ss_pred             HHHHHHhh----------cCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHc-----
Confidence            22222210          1122 1223334556666654432            236799999999876544332     


Q ss_pred             HHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        159 ETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                  +    .-.+..+|+++..+++|.+++..-+.+.
T Consensus       492 ------------d----apl~lLDEPTegLD~~TE~~vL~ll~~~  520 (573)
T COG4987         492 ------------D----APLWLLDEPTEGLDPITERQVLALLFEH  520 (573)
T ss_pred             ------------C----CCeEEecCCcccCChhhHHHHHHHHHHH
Confidence                        1    1135578888999999999988765543

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.75  E-value=9.4e-09  Score=91.44  Aligned_cols=152  Identities=13%  Similarity=0.182  Sum_probs=88.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.++|.||||||||||+++|++...  .+.+.+++.++...    .....+.      ...+.++.......
T Consensus        22 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~----~~~~~~~------~i~~~~q~~~~~~~   91 (241)
T PRK14250         22 ISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTI----DVIDLRR------KIGMVFQQPHLFEG   91 (241)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhc----ChHHhhh------cEEEEecCchhchh
Confidence            567788999999999999999999999999765  45666776554321    0001100      00111111111011


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-H-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-Y-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ...+.+. +...    ..  .....++..+++.+++. . ..+....||+|+.|+++...++..-.+             
T Consensus        92 tv~e~l~-~~~~----~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~-------------  151 (241)
T PRK14250         92 TVKDNIE-YGPM----LK--GEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPE-------------  151 (241)
T ss_pred             hHHHHHh-cchh----hc--CcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCC-------------
Confidence            1111111 0000    00  11234566677777773 3 455668899999999987665543111             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                              -+..+|+....++.+.+.+.+.|++.
T Consensus       152 --------llllDEPt~~LD~~~~~~l~~~l~~~  177 (241)
T PRK14250        152 --------VLLLDEPTSALDPTSTEIIEELIVKL  177 (241)
T ss_pred             --------EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence                    24466677777778888888888775

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=98.75  E-value=7.4e-09  Score=95.25  Aligned_cols=154  Identities=17%  Similarity=0.177  Sum_probs=93.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...+  +.+.+++.++...     ...++   .   ...+.++...... 
T Consensus        21 is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~-----~~~~~---~---~ig~~~q~~~l~~~   89 (301)
T TIGR03522        21 VSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQN-----PKEVQ---R---NIGYLPEHNPLYLD   89 (301)
T ss_pred             eEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC-----hHHHH---h---ceEEecCCCCCCCC
Confidence            4677899999999999999999999999997654  5566666544221     11111   1   0122222211111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                      ....+.+...     ..+...+  ...++...+++.+++.. +.+....||+|++|++....++..-.+           
T Consensus        90 ~tv~e~l~~~-----~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~-----------  153 (301)
T TIGR03522        90 MYVREYLQFI-----AGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPK-----------  153 (301)
T ss_pred             CcHHHHHHHH-----HHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCC-----------
Confidence            1222222210     0011112  23456777888888854 446668899999999987665543211           


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                -+..+++....++.+.+.|.+.+++++
T Consensus       154 ----------lliLDEPt~gLD~~~~~~l~~~l~~~~  180 (301)
T TIGR03522       154 ----------VLILDEPTTGLDPNQLVEIRNVIKNIG  180 (301)
T ss_pred             ----------EEEEcCCcccCCHHHHHHHHHHHHHhc
Confidence                      244667777778888888888888874

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=98.75  E-value=6.3e-09  Score=97.87  Aligned_cols=159  Identities=11%  Similarity=0.146  Sum_probs=92.1

Q ss_pred             hhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773         13 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP   90 (299)
Q Consensus        13 ~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~   90 (299)
                      -++|.+.+++.++|.||||||||||+++|++...+  +.+.+++.++.......   ..... .  +...+.++....-.
T Consensus        15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~---~~~~~-~--~~i~~v~q~~~l~~   88 (354)
T TIGR02142        15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGI---FLPPE-K--RRIGYVFQEARLFP   88 (354)
T ss_pred             EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCcccc---ccchh-h--CCeEEEecCCccCC
Confidence            36788899999999999999999999999998754  55667766553210000   00000 0  00011111111111


Q ss_pred             -hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 -SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        91 -~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                       ....+.+.. ..  ..  ....+..+++..+++.+++..+ .+....||||++|+++...++..-.+            
T Consensus        89 ~~tv~enl~~-~~--~~--~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~------------  151 (354)
T TIGR02142        89 HLSVRGNLRY-GM--KR--ARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPR------------  151 (354)
T ss_pred             CCcHHHHHHH-Hh--hc--cChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCC------------
Confidence             111122210 00  00  0112234567778888888654 45568899999999987765543221            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                               .+..+|+....++.+.+.|.+.|++.
T Consensus       152 ---------lllLDEPts~LD~~~~~~l~~~L~~l  177 (354)
T TIGR02142       152 ---------LLLMDEPLAALDDPRKYEILPYLERL  177 (354)
T ss_pred             ---------EEEEcCCCcCCCHHHHHHHHHHHHHH
Confidence                     24466677777777788888877765

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.75  E-value=8e-09  Score=91.71  Aligned_cols=156  Identities=15%  Similarity=0.183  Sum_probs=89.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC-c
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-P   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-~   90 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...+  +.+.+++.++.....  ....+          .+.++..... .
T Consensus        21 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i----------~~v~q~~~~~~~   88 (239)
T cd03296          21 VSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNV----------GFVFQHYALFRH   88 (239)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccce----------EEEecCCcccCC
Confidence            4677899999999999999999999999998653  556666654422100  00001          1111111111 0


Q ss_pred             hhhhHHHhhcCccchhhcC--CCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVPNITWEDIG--GLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~--r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                      ....+.+.. .........  ......+++..+++.+++..+ ......||+|++|+++...++..-.+           
T Consensus        89 ~tv~e~l~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~-----------  156 (239)
T cd03296          89 MTVFDNVAF-GLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPK-----------  156 (239)
T ss_pred             CCHHHHHhh-hhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC-----------
Confidence            111121110 000000000  011223456677777888554 45568899999999987665543211           


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                -+..+|+....++.+.+.|.+.|.+.
T Consensus       157 ----------llllDEP~~~LD~~~~~~l~~~l~~~  182 (239)
T cd03296         157 ----------VLLLDEPFGALDAKVRKELRRWLRRL  182 (239)
T ss_pred             ----------EEEEcCCcccCCHHHHHHHHHHHHHH
Confidence                      24466677777778888888888765

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=98.75  E-value=1.6e-08  Score=90.75  Aligned_cols=159  Identities=13%  Similarity=0.126  Sum_probs=89.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.|+||+|||||+++|++...+  +.+.+++.++...    ....++      ....+.++...... 
T Consensus        21 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----~~~~~~------~~i~~~~q~~~~~~~   90 (255)
T PRK11231         21 LSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISML----SSRQLA------RRLALLPQHHLTPEG   90 (255)
T ss_pred             eeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHC----CHHHHh------hheEEecccCCCCCC
Confidence            4677899999999999999999999999997653  5566666544221    000111      00011111111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCC-ccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVPNITWEDIGGL-EGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~-p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                      ....+.+..........+... ....+++..+++.+++... ......||+|++++++...++..-.+            
T Consensus        91 ~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~------------  158 (255)
T PRK11231         91 ITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTP------------  158 (255)
T ss_pred             ccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCC------------
Confidence            112222211000000000101 1224456677777788544 45567899999999987665543221            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                               .+..+|+....++.+.+.|.+.|.+.
T Consensus       159 ---------llllDEP~~~LD~~~~~~l~~~l~~l  184 (255)
T PRK11231        159 ---------VVLLDEPTTYLDINHQVELMRLMREL  184 (255)
T ss_pred             ---------EEEEcCCcccCCHHHHHHHHHHHHHH
Confidence                     24456666677777888888888765

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.74  E-value=1.1e-08  Score=91.68  Aligned_cols=160  Identities=11%  Similarity=0.186  Sum_probs=88.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.|+||||||||+++|++.+.       .+.+.+++.++....  .....++.      ...+.++..
T Consensus        26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~--~~~~~~~~------~i~~v~q~~   97 (254)
T PRK14273         26 INIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNN--FDILELRR------KIGMVFQTP   97 (254)
T ss_pred             eeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccc--ccHHHHhh------ceEEEeecc
Confidence            567789999999999999999999999999775       356777765543110  00000100      001111111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      ..-.....+.+..... ... ........+++..+++.+++     ..+......||||++|+++...++..-.      
T Consensus        98 ~~~~~tv~eni~~~~~-~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p------  169 (254)
T PRK14273         98 NPFLMSIYDNISYGPK-IHG-TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEP------  169 (254)
T ss_pred             ccccCcHHHHHHHHHH-hcC-CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCC------
Confidence            1101111121111000 000 00011223455555555554     2345566889999999988766554311      


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                     ..+..+|+....++.+.+.+.+.|++.+
T Consensus       170 ---------------~lllLDEPt~~LD~~~~~~l~~~l~~~~  197 (254)
T PRK14273        170 ---------------NVILMDEPTSALDPISTGKIEELIINLK  197 (254)
T ss_pred             ---------------CEEEEeCCCcccCHHHHHHHHHHHHHHh
Confidence                           1244667777778888888888888774

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=98.74  E-value=8.3e-09  Score=91.66  Aligned_cols=159  Identities=13%  Similarity=0.129  Sum_probs=90.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|+||||+|||||+++|++...  .+.+.+++.++...    ...   ..+..  ...+.++...... 
T Consensus        22 ~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----~~~---~~~~~--~i~~~~q~~~~~~~   92 (241)
T PRK10895         22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLL----PLH---ARARR--GIGYLPQEASIFRR   92 (241)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC----CHH---HHHHh--CeEEeccCCccccc
Confidence            567789999999999999999999999999765  45566776554321    100   00000  0012222111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+... ..+... ........+...+++.+++..+ ......||+|+++++....++..-.+             
T Consensus        93 ~tv~enl~~~-~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~-------------  157 (241)
T PRK10895         93 LSVYDNLMAV-LQIRDD-LSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPK-------------  157 (241)
T ss_pred             CcHHHHHhhh-hhcccc-cCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence            1111222110 000000 0112234566777888888654 45568899999999887655433111             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                              -+..+|+....++.+.+.|.+.+++.+
T Consensus       158 --------llllDEPt~~LD~~~~~~l~~~l~~~~  184 (241)
T PRK10895        158 --------FILLDEPFAGVDPISVIDIKRIIEHLR  184 (241)
T ss_pred             --------EEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence                    244566667777777887877776653

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=98.74  E-value=1.3e-08  Score=91.23  Aligned_cols=160  Identities=12%  Similarity=0.120  Sum_probs=90.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC-Cc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS-SP   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~-~~   90 (299)
                      ++|.+.+++.++|.|+||+|||||+++|++.+.  .+.+.+++.++...    ....++   .   ...+.++.... ..
T Consensus        20 is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~----~~~~~~---~---~i~~~~q~~~~~~~   89 (256)
T TIGR03873        20 VDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGL----SRRARA---R---RVALVEQDSDTAVP   89 (256)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccC----CHHHHh---h---heEEecccCccCCC
Confidence            467788999999999999999999999999765  45566766554321    011111   0   00111211111 11


Q ss_pred             hhhhHHHhhcCccchhhcCC-CccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVPNITWEDIGG-LEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r-~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                      ....+.+............. .....+++..+++.+++..+ ......||+|++++++...++..-.+            
T Consensus        90 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~------------  157 (256)
T TIGR03873        90 LTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPK------------  157 (256)
T ss_pred             CCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCC------------
Confidence            11122221100000000000 11234466777888888654 45567899999999987665544221            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                               .+..+++....++.+.+.+.+.|++.+
T Consensus       158 ---------llllDEPt~~LD~~~~~~l~~~l~~~~  184 (256)
T TIGR03873       158 ---------LLLLDEPTNHLDVRAQLETLALVRELA  184 (256)
T ss_pred             ---------EEEEcCccccCCHHHHHHHHHHHHHHH
Confidence                     234556666667777778888777663

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=98.74  E-value=1.1e-08  Score=90.48  Aligned_cols=151  Identities=16%  Similarity=0.191  Sum_probs=90.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|+||||+|||||+++|++...  .+.+.+++.++....    . ..          .+.++...... 
T Consensus         4 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----~-~~----------~~v~q~~~l~~~   68 (230)
T TIGR01184         4 VNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG----P-DR----------MVVFQNYSLLPW   68 (230)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC----h-hh----------eEEecCcccCCC
Confidence            467889999999999999999999999999875  355667766553210    0 00          01111111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCC--ccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVPNITWEDIGGL--EGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~--p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                      ....+.+.....   ......  ....+++..+++.+++... ......||+|++|+++...++..-.            
T Consensus        69 ~tv~e~l~~~~~---~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p------------  133 (230)
T TIGR01184        69 LTVRENIALAVD---RVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRP------------  133 (230)
T ss_pred             CCHHHHHHHHHH---hcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCC------------
Confidence            111122111000   000011  1223456677777888654 4555789999999998765444311            


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                               ..+..+|+....++.+...|.+.|.+.
T Consensus       134 ---------~lllLDEPt~gLD~~~~~~l~~~l~~~  160 (230)
T TIGR01184       134 ---------KVLLLDEPFGALDALTRGNLQEELMQI  160 (230)
T ss_pred             ---------CEEEEcCCCcCCCHHHHHHHHHHHHHH
Confidence                     124567777788888889998888775

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.74  E-value=1.2e-08  Score=91.58  Aligned_cols=160  Identities=14%  Similarity=0.275  Sum_probs=89.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.|+||+|||||+++|++...       .+.+.+++.++.....  ....++.      ...+.++..
T Consensus        31 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~--~~~~~~~------~i~~v~q~~  102 (259)
T PRK14274         31 INLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV--DLVELRK------NIGMVFQKG  102 (259)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc--CHHHHhh------ceEEEecCC
Confidence            467788999999999999999999999999764       4567777765532100  0001110      001112111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      ........+.+..... ... ........+++..+++.+++     +.+......||+|++|+++...++..-.+     
T Consensus       103 ~~~~~tv~enl~~~~~-~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~-----  175 (259)
T PRK14274        103 NPFPQSIFDNVAYGPR-IHG-TKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPD-----  175 (259)
T ss_pred             cccccCHHHHHHhHHH-hcC-CCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCC-----
Confidence            1111112222211000 000 00001123345555555554     23456668899999999887654443111     


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                      .+..+|+....++.+...|.+.|++++
T Consensus       176 ----------------llllDEPt~~LD~~~~~~l~~~l~~~~  202 (259)
T PRK14274        176 ----------------VLLMDEPTSALDPVSTRKIEELILKLK  202 (259)
T ss_pred             ----------------EEEEcCCcccCCHHHHHHHHHHHHHHh
Confidence                            244667777777888888888888764

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.74  E-value=2.1e-09  Score=94.11  Aligned_cols=133  Identities=15%  Similarity=0.137  Sum_probs=79.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccH-HHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESE-ANVRDIFDKVTMENFRYAMGKSSP   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~-~~i~~~f~~a~~~~~~~~~~~~~~   90 (299)
                      ++|.+.+++.++|+||||+||||++++|.+.+.+  +.+.+.+.++......+.. .-+...|+..+.        -..-
T Consensus        23 Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rl--------F~~l   94 (250)
T COG0411          23 VSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRL--------FPGL   94 (250)
T ss_pred             eeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccc--------cCCC
Confidence            6788999999999999999999999999997764  5677888887654322110 001112222111        0000


Q ss_pred             hhhhHHHhhcC--ccchhhc------CCCccHHHHHhhhcccCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVP--NITWEDI------GGLEGVKRELQELVQDVDLNYIAKVT-NGFSGADLTEICQRACKLAI  154 (299)
Q Consensus        91 ~~~~~~l~~l~--~~l~~~~------~r~p~~~~R~~~l~~~v~l~~LA~~t-~glSggDl~~Lv~~A~~~a~  154 (299)
                      .....++....  ..+...+      ....+..+|++.+++.+++...+... ..+|+|++++|-...++++-
T Consensus        95 TVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~  167 (250)
T COG0411          95 TVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQ  167 (250)
T ss_pred             cHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcC
Confidence            00111111100  0011111      11345567788999999998888666 45999998888766655543

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=98.73  E-value=8.7e-09  Score=94.85  Aligned_cols=156  Identities=15%  Similarity=0.142  Sum_probs=91.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.||||+|||||+++|++.+.+  +.+.+++.++...     ....+.      ...+.++...... 
T Consensus        23 vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~------~i~~v~q~~~~~~~   91 (303)
T TIGR01288        23 LSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-----ARLARV------AIGVVPQFDNLDPE   91 (303)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-----HHHHhh------cEEEEeccccCCcC
Confidence            5677899999999999999999999999997654  5566666544211     000100      0012221111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+..... ...  .......+++..+++.+++... ......||+|++|++....++..-.+             
T Consensus        92 ~tv~e~l~~~~~-~~~--~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~-------------  155 (303)
T TIGR01288        92 FTVRENLLVFGR-YFG--MSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQ-------------  155 (303)
T ss_pred             CcHHHHHHHHHH-HcC--CCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence            112222211000 000  0011223456667777888554 45568899999999987665543111             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                              .+..+|+....++.+.+.|.+.|++.+
T Consensus       156 --------lllLDEPt~gLD~~~~~~l~~~l~~~~  182 (303)
T TIGR01288       156 --------LLILDEPTTGLDPHARHLIWERLRSLL  182 (303)
T ss_pred             --------EEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence                    245667777888888888888888763

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=98.73  E-value=5.9e-09  Score=97.46  Aligned_cols=156  Identities=14%  Similarity=0.137  Sum_probs=94.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC-c
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-P   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-~   90 (299)
                      ++|.+.+++.++|.||||+|||||+++|++.+.+  +.+.+++.++...     ...++.      ...+.++..... .
T Consensus        60 is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~-----~~~~~~------~ig~v~q~~~~~~~  128 (340)
T PRK13536         60 LSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPAR-----ARLARA------RIGVVPQFDNLDLE  128 (340)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcc-----hHHHhc------cEEEEeCCccCCCC
Confidence            5678899999999999999999999999997754  5667777654321     001100      001222111111 1


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+..+.. +..  ....+..++...+++.+++... .++...||+|++|++....++..-.              
T Consensus       129 ~tv~e~l~~~~~-~~~--~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P--------------  191 (340)
T PRK13536        129 FTVRENLLVFGR-YFG--MSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDP--------------  191 (340)
T ss_pred             CcHHHHHHHHHH-HcC--CCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCC--------------
Confidence            111222211100 000  0011234456677777888554 4566889999999998766554311              


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                             ..+..+|+....++.+...|.+.|++.+
T Consensus       192 -------~lLiLDEPt~gLD~~~r~~l~~~l~~l~  219 (340)
T PRK13536        192 -------QLLILDEPTTGLDPHARHLIWERLRSLL  219 (340)
T ss_pred             -------CEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence                   1355677788888899999999988864

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=1.4e-08  Score=88.26  Aligned_cols=125  Identities=22%  Similarity=0.264  Sum_probs=72.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc----CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ----ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~----~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~   89 (299)
                      ++|.+..++...|.||||+|||||+++|++...    .+.+.+++.++....+.+  ++-.-+|-     +|+.+..- .
T Consensus        23 vnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~E--RAr~GifL-----afQ~P~ei-~   94 (251)
T COG0396          23 VNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDE--RARAGIFL-----AFQYPVEI-P   94 (251)
T ss_pred             cceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhH--HHhcCCEE-----eecCCccC-C
Confidence            567889999999999999999999999999764    466888999987654322  21111111     11111111 1


Q ss_pred             chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-HHHHhc--CCCCHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-YIAKVT--NGFSGADLTEIC  146 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~LA~~t--~glSggDl~~Lv  146 (299)
                      ......++............-.++...++...+..++++ ..+.+.  +|||||+.++.-
T Consensus        95 GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~E  154 (251)
T COG0396          95 GVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNE  154 (251)
T ss_pred             CeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHH
Confidence            112223332211100000000244455666677777773 355444  899999998854

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=98.73  E-value=1.3e-08  Score=91.55  Aligned_cols=160  Identities=15%  Similarity=0.245  Sum_probs=90.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...       .+.+.+++.++....  .....++.      ...+.++..
T Consensus        32 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~--~~~~~~~~------~i~~~~q~~  103 (260)
T PRK10744         32 INLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK--QDIALLRA------KVGMVFQKP  103 (260)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc--cchHHHhc------ceEEEecCC
Confidence            567889999999999999999999999999764       456677765542110  00001110      001111111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      ........+.+..... .... .......+++..+++.+++     ..+......||+|++|+++...++..-.+     
T Consensus       104 ~~~~~tv~~nl~~~~~-~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~-----  176 (260)
T PRK10744        104 TPFPMSIYDNIAFGVR-LFEK-LSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPE-----  176 (260)
T ss_pred             ccCcCcHHHHHhhhHh-hcCC-CCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCC-----
Confidence            1111111122110000 0000 0011223456666666664     23455668899999999987665543111     


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                      .+..+|+....++.+.+.|.+.|++.+
T Consensus       177 ----------------lllLDEPt~~LD~~~~~~l~~~L~~~~  203 (260)
T PRK10744        177 ----------------VLLLDEPCSALDPISTGRIEELITELK  203 (260)
T ss_pred             ----------------EEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence                            244667777778888888988888764

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=98.73  E-value=1.6e-08  Score=91.47  Aligned_cols=160  Identities=14%  Similarity=0.287  Sum_probs=90.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.|+||+|||||+++|++...       .+.+.+++.++.....  ....++.      ...+.++..
T Consensus        38 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~--~~~~~~~------~i~~v~q~~  109 (267)
T PRK14235         38 VDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL--DVVELRA------RVGMVFQKP  109 (267)
T ss_pred             EEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc--chHHHhh------ceEEEecCC
Confidence            567789999999999999999999999999764       4667777665432100  0000100      001112111


Q ss_pred             CCCchhhhHHHhhcCccchhhcC-CCccHHHHHhhhcccCCHH-----HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIG-GLEGVKRELQELVQDVDLN-----YIAKVTNGFSGADLTEICQRACKLAIRQSIET  160 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~-r~p~~~~R~~~l~~~v~l~-----~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~  160 (299)
                      ..-.....+.+..... ... .. ...+..+++..+++.+++.     .+......||+|++|++....++..-.+    
T Consensus       110 ~~~~~tv~enl~~~~~-~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~----  183 (267)
T PRK14235        110 NPFPKSIYENVAYGPR-IHG-LARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPE----  183 (267)
T ss_pred             CCCCCcHHHHHHHHHH-hcc-cccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCC----
Confidence            1111112222210000 000 00 0112234556667766663     2345568899999999987665543221    


Q ss_pred             HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                       -+..+|+....++.+.+.|.+.|++..
T Consensus       184 -----------------lllLDEPt~~LD~~~~~~l~~~L~~l~  210 (267)
T PRK14235        184 -----------------VILMDEPCSALDPIATAKVEELIDELR  210 (267)
T ss_pred             -----------------EEEEeCCCcCCCHHHHHHHHHHHHHHh
Confidence                             244667777778888888888887764

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=98.73  E-value=1e-08  Score=88.34  Aligned_cols=151  Identities=17%  Similarity=0.163  Sum_probs=88.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...+  +.+.+++.++...         ...+.  +...+.++...... 
T Consensus        19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~---------~~~~~--~~i~~~~q~~~~~~~   87 (198)
T TIGR01189        19 LSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQ---------RDEPH--RNILYLGHLPGLKPE   87 (198)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccc---------hHHhh--hheEEeccCcccccC
Confidence            5777899999999999999999999999997654  4556665544221         00010  01111121111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+...    .. ..  ....+++..+++.+++... ......||+|+.+++....++..-.+             
T Consensus        88 ~tv~~~l~~~----~~-~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~-------------  147 (198)
T TIGR01189        88 LSALENLHFW----AA-IH--GGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAP-------------  147 (198)
T ss_pred             CcHHHHHHHH----HH-Hc--CCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCC-------------
Confidence            1111221110    00 01  1113455667777788554 45568899999999886654443211             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                              .+..+|+....++.+.+.|.++|.+.
T Consensus       148 --------llllDEPt~~LD~~~~~~l~~~l~~~  173 (198)
T TIGR01189       148 --------LWILDEPTTALDKAGVALLAGLLRAH  173 (198)
T ss_pred             --------EEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence                    24466677777777888888888765

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=98.73  E-value=7.8e-09  Score=90.53  Aligned_cols=156  Identities=14%  Similarity=0.135  Sum_probs=87.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.||||||||||+++|++...  .+.+.+++.++...    .....   ...  ...+.++...... 
T Consensus        19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----~~~~~---~~~--~i~~~~q~~~~~~~   89 (222)
T cd03224          19 VSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGL----PPHER---ARA--GIGYVPEGRRIFPE   89 (222)
T ss_pred             eeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCC----CHHHH---Hhc--CeEEeccccccCCC
Confidence            467789999999999999999999999999775  35566776554321    00000   000  0011111111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccC-CHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDV-DLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v-~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                      ....+.+.....     .........+...+++.+ .+.. +......||+|+.|+++...++..-.             
T Consensus        90 ~t~~~~l~~~~~-----~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p-------------  151 (222)
T cd03224          90 LTVEENLLLGAY-----ARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRP-------------  151 (222)
T ss_pred             CcHHHHHHHHhh-----hcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCC-------------
Confidence            111122211000     000112233444455555 3433 44556789999999988765543211             


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                              ..+..+|+....++.+.+.|.+.|++..
T Consensus       152 --------~llllDEPt~~LD~~~~~~l~~~l~~~~  179 (222)
T cd03224         152 --------KLLLLDEPSEGLAPKIVEEIFEAIRELR  179 (222)
T ss_pred             --------CEEEECCCcccCCHHHHHHHHHHHHHHH
Confidence                    1244667777788888999999988764

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=98.73  E-value=9.1e-09  Score=92.41  Aligned_cols=160  Identities=14%  Similarity=0.292  Sum_probs=89.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.||||||||||+++|++...       .+.+.+++.++.....  .....+.      ...+..+..
T Consensus        23 isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~--~~~~~~~------~i~~~~q~~   94 (258)
T PRK14241         23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV--DPVAVRR------TIGMVFQRP   94 (258)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc--ChHHHhc------ceEEEcccc
Confidence            567889999999999999999999999999764       5667777665421100  0000100      001111111


Q ss_pred             CCCc-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSP-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIET  160 (299)
Q Consensus        87 ~~~~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~  160 (299)
                      .... ....+.+... ..... ........+++..+++.+++     ..+......||+|++++++...++..-.+    
T Consensus        95 ~~~~~~tv~~nl~~~-~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~----  168 (258)
T PRK14241         95 NPFPTMSIRDNVVAG-LKLNG-VRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPD----  168 (258)
T ss_pred             ccCCCCcHHHHHHHH-HHhcC-CCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCC----
Confidence            1111 1111211100 00000 00011223455566666665     23445568899999999987765543221    


Q ss_pred             HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                       -+..+|+....++.+.+.|.+.|++++
T Consensus       169 -----------------llllDEPt~~LD~~~~~~l~~~l~~~~  195 (258)
T PRK14241        169 -----------------VLLMDEPCSALDPISTLAIEDLINELK  195 (258)
T ss_pred             -----------------EEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence                             244666777777888888888888764

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.73  E-value=4.4e-09  Score=95.12  Aligned_cols=156  Identities=12%  Similarity=0.115  Sum_probs=87.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~   89 (299)
                      +++.+.+++.++|.||||+|||||+++|++...  .+.+.+++.++...    ....++.      ...+.++...  ..
T Consensus        28 isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~----~~~~~~~------~i~~v~q~~~~~~~   97 (269)
T PRK13648         28 VSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDD----NFEKLRK------HIGIVFQNPDNQFV   97 (269)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcC----CHHHHHh------heeEEEeChHHhcc
Confidence            567789999999999999999999999999765  45667776654321    1011110      0011111100  00


Q ss_pred             chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                      .....+.+.. .  ............+++..+++.+++.. +......||+|+.+++....++..-.+            
T Consensus        98 ~~~v~~~~~~-~--~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~------------  162 (269)
T PRK13648         98 GSIVKYDVAF-G--LENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPS------------  162 (269)
T ss_pred             cccHHHHHHh-h--HHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCC------------
Confidence            0011111100 0  00000001122345667777777744 456668899999999887655443211            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                               .+..+|+....++.+.+.|.+.|.+.
T Consensus       163 ---------lllLDEPt~~LD~~~~~~l~~~L~~~  188 (269)
T PRK13648        163 ---------VIILDEATSMLDPDARQNLLDLVRKV  188 (269)
T ss_pred             ---------EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence                     24455666666777777777777654

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=98.72  E-value=1.6e-08  Score=91.25  Aligned_cols=159  Identities=10%  Similarity=0.099  Sum_probs=89.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC-c
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-P   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-~   90 (299)
                      ++|.+.+++.++|+||||+|||||+++|++....  +.+.+++.++...    ....++.      ...+.++..... .
T Consensus        26 isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~----~~~~~~~------~i~~v~q~~~~~~~   95 (265)
T PRK10253         26 LTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHY----ASKEVAR------RIGLLAQNATTPGD   95 (265)
T ss_pred             cceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhC----CHHHHhh------heEEeeccCcCCCC
Confidence            5677889999999999999999999999998753  5566666544321    0011110      001112111111 1


Q ss_pred             hhhhHHHhhcCccchhhcCCCc-cHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVPNITWEDIGGLE-GVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p-~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                      ....+.+..........+...+ ...+++..+++.+++.. +.+....||+|++++++...++..-.+            
T Consensus        96 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~------------  163 (265)
T PRK10253         96 ITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETA------------  163 (265)
T ss_pred             CcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCC------------
Confidence            1111222110000000000011 22345667778888854 456668899999999987665544221            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                               .+..+++....++.+.+.+.+.|.+.
T Consensus       164 ---------llllDEPt~gLD~~~~~~l~~~L~~l  189 (265)
T PRK10253        164 ---------IMLLDEPTTWLDISHQIDLLELLSEL  189 (265)
T ss_pred             ---------EEEEeCccccCCHHHHHHHHHHHHHH
Confidence                     23455666666777777787777765

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.72  E-value=1.5e-08  Score=90.13  Aligned_cols=164  Identities=12%  Similarity=0.173  Sum_probs=90.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.||||||||||+++|++...+  +.+.+++.++.... .........+..   ...+.++...... 
T Consensus        21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~~~~~~~---~i~~~~q~~~~~~~   96 (242)
T PRK11124         21 ITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSK-TPSDKAIRELRR---NVGMVFQQYNLWPH   96 (242)
T ss_pred             eeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc-ccchhhHHHHHh---heEEEecCccccCC
Confidence            4577889999999999999999999999997653  55666665441000 000000111110   0011111111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+.........  ........++..+++.+++.. +......||+|+.|++....++..-.+             
T Consensus        97 ~tv~e~i~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~-------------  161 (242)
T PRK11124         97 LTVQQNLIEAPCRVLG--LSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQ-------------  161 (242)
T ss_pred             CcHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence            1112222110000000  001123445667777788854 455668999999999886654443111             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                              .+..+|+....++.+.+.+.+.|++.+
T Consensus       162 --------llilDEPt~~LD~~~~~~l~~~l~~~~  188 (242)
T PRK11124        162 --------VLLFDEPTAALDPEITAQIVSIIRELA  188 (242)
T ss_pred             --------EEEEcCCCCcCCHHHHHHHHHHHHHHH
Confidence                    244666777777778888888887653

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=98.72  E-value=1.6e-08  Score=89.75  Aligned_cols=162  Identities=11%  Similarity=0.190  Sum_probs=91.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.||||||||||+++|++.+.  .+.+.+++.++....    ......+..   ...+.++...... 
T Consensus        20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~----~~~~~~~~~---~i~~~~q~~~~~~~   92 (241)
T cd03256          20 VSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLK----GKALRQLRR---QIGMIFQQFNLIER   92 (241)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccC----HhHHHHHHh---ccEEEcccCccccc
Confidence            567889999999999999999999999999765  455667765543210    000000000   0011221111111 


Q ss_pred             hhhhHHHhhcCccc---hhhcCC--CccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVPNIT---WEDIGG--LEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRR  164 (299)
Q Consensus        91 ~~~~~~l~~l~~~l---~~~~~r--~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~  164 (299)
                      ....+.+.......   ...+..  .....+++..+++.+++..+ ......||+|++|+++...++..-.+        
T Consensus        93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~--------  164 (241)
T cd03256          93 LSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPK--------  164 (241)
T ss_pred             CcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCC--------
Confidence            11122221100000   000000  12234566677888888654 45567899999999987655443111        


Q ss_pred             HHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        165 EREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                   -+..+|+....++.+.+.|.+.|++.
T Consensus       165 -------------llllDEPt~~LD~~~~~~l~~~l~~~  190 (241)
T cd03256         165 -------------LILADEPVASLDPASSRQVMDLLKRI  190 (241)
T ss_pred             -------------EEEEeCccccCCHHHHHHHHHHHHHH
Confidence                         24466777777788888888888765

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=98.72  E-value=8.3e-09  Score=93.90  Aligned_cols=157  Identities=11%  Similarity=0.113  Sum_probs=90.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~   89 (299)
                      ++|.+.+++.++|+|+||+|||||+++|++.+.+  +.+.+++.++....   ....++.      ...+.++...  ..
T Consensus        29 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~---~~~~~~~------~i~~v~q~~~~~~~   99 (280)
T PRK13633         29 VNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEE---NLWDIRN------KAGMVFQNPDNQIV   99 (280)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccc---cHHHHhh------heEEEecChhhhhc
Confidence            4567899999999999999999999999998664  56677765543210   0000110      0011111100  00


Q ss_pred             chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                      .....+.+.....   ..-.......+++..+++.+++.. +......||+|++|++....++..-.+            
T Consensus       100 ~~~v~~~l~~~~~---~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~------------  164 (280)
T PRK13633        100 ATIVEEDVAFGPE---NLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPE------------  164 (280)
T ss_pred             cccHHHHHHhhHh---hcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCC------------
Confidence            0011111110000   000011223456677888888855 456668999999999887665543221            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                               -+..+|+....++.+.+.|.+.|++.
T Consensus       165 ---------llllDEPt~gLD~~~~~~l~~~l~~l  190 (280)
T PRK13633        165 ---------CIIFDEPTAMLDPSGRREVVNTIKEL  190 (280)
T ss_pred             ---------EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence                     24456677777778888888877765

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=98.72  E-value=2.1e-09  Score=91.52  Aligned_cols=161  Identities=14%  Similarity=0.174  Sum_probs=100.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHH-HHhhhhcCC-C
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTME-NFRYAMGKS-S   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-~~~~~~~~~-~   89 (299)
                      ++|.+.+++.|.|.||||+||||...++.+...  .+-+.+++.++....+          +.+|+.- ...++..+. .
T Consensus        23 Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm----------~~RArlGigYLpQE~SIFr   92 (243)
T COG1137          23 VSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPM----------HKRARLGIGYLPQEASIFR   92 (243)
T ss_pred             eeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCCh----------HHHhhcCcccccccchHhh
Confidence            678899999999999999999999999999765  4667889888876432          2222221 111110000 0


Q ss_pred             chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVT-NGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~t-~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                      .-+..+.+..+....... ......+.|++.+++++.+..+.... ..+|||+.+++-.+.++.+-.+            
T Consensus        93 ~LtV~dNi~~vlE~~~~d-~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~------------  159 (243)
T COG1137          93 KLTVEDNIMAVLEIREKD-LKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPK------------  159 (243)
T ss_pred             cCcHHHHHHHHHhhhhcc-hhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCC------------
Confidence            000111111110100000 00113344566899999999888665 6799999999776554443111            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhccCC
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARRS  206 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~Ps  206 (299)
                               -+..+++....+|+.-.|+.+-++..+.+
T Consensus       160 ---------fiLLDEPFAGVDPiaV~dIq~iI~~L~~r  188 (243)
T COG1137         160 ---------FILLDEPFAGVDPIAVIDIQRIIKHLKDR  188 (243)
T ss_pred             ---------EEEecCCccCCCchhHHHHHHHHHHHHhC
Confidence                     24466777788999999999999888754

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=98.72  E-value=3.8e-08  Score=98.06  Aligned_cols=152  Identities=13%  Similarity=0.147  Sum_probs=91.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      .++.+++++.++|.|++|+|||||++.|++...+  +.+.+++.++...    ....++..+      .+.++....-..
T Consensus       351 inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~----~~~~~~~~i------~~v~Q~~~lf~~  420 (571)
T TIGR02203       351 ISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADY----TLASLRRQV------ALVSQDVVLFND  420 (571)
T ss_pred             eeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhc----CHHHHHhhc------eEEccCcccccc
Confidence            5667899999999999999999999999998764  6677887665432    111222211      122222211122


Q ss_pred             hhhHHHhhcCccchhhcCCC-ccHHHHHhhhcccCCHHH-HHHh-----------cCCCCHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGL-EGVKRELQELVQDVDLNY-IAKV-----------TNGFSGADLTEICQRACKLAIRQSI  158 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~-p~~~~R~~~l~~~v~l~~-LA~~-----------t~glSggDl~~Lv~~A~~~a~~r~~  158 (299)
                      +.++.+.-.         +. .-.++++..+++.+++++ +.+.           ...+||||+|+++...++..-..  
T Consensus       421 Ti~~Ni~~~---------~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~--  489 (571)
T TIGR02203       421 TIANNIAYG---------RTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAP--  489 (571)
T ss_pred             cHHHHHhcC---------CCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC--
Confidence            222222210         00 112345555566666633 2222           24599999999987654443111  


Q ss_pred             HHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773        159 ETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P  205 (299)
                                         .+..+|+....+..+.+.+.+.|.+..+
T Consensus       490 -------------------illLDEpts~LD~~~~~~i~~~L~~~~~  517 (571)
T TIGR02203       490 -------------------ILILDEATSALDNESERLVQAALERLMQ  517 (571)
T ss_pred             -------------------EEEEeCccccCCHHHHHHHHHHHHHHhC
Confidence                               2446778888888899999999888744

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=98.72  E-value=2.3e-08  Score=88.04  Aligned_cols=44  Identities=27%  Similarity=0.543  Sum_probs=36.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPEL   57 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l   57 (299)
                      ++|.+.+++.++|.||||||||||+++|++.+.+  +.+.+++.++
T Consensus        22 isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   67 (229)
T cd03254          22 INFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDI   67 (229)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeH
Confidence            4567889999999999999999999999998753  5666666544

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.72  E-value=1.1e-08  Score=100.25  Aligned_cols=157  Identities=13%  Similarity=0.118  Sum_probs=85.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.++|+||||||||||+|+|++.+.+  +.+.+++.++...    .....+..+      .+.++....  .
T Consensus        22 vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~----~~~~~~~~i------~~~~q~~~~--~   89 (490)
T PRK10938         22 PSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRL----SFEQLQKLV------SDEWQRNNT--D   89 (490)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccC----CHHHHHHHh------ceeccCcch--h
Confidence            5678899999999999999999999999998754  4444544433211    001111000      111110000  0


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLA  170 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~  170 (299)
                      ................+.......+|+..+++.+++..+ ......||||++|++....++..-.+              
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~--------------  155 (490)
T PRK10938         90 MLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPD--------------  155 (490)
T ss_pred             hcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCC--------------
Confidence            000000000000000000011235677788888898654 45568999999999988766554221              


Q ss_pred             CCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        171 GNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                             .+..+|+....++.+.+.|.+.|++.
T Consensus       156 -------lllLDEPt~~LD~~~~~~l~~~l~~~  181 (490)
T PRK10938        156 -------LLILDEPFDGLDVASRQQLAELLASL  181 (490)
T ss_pred             -------EEEEcCCcccCCHHHHHHHHHHHHHH
Confidence                   23355555666666666666666654

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.72  E-value=7.8e-09  Score=93.81  Aligned_cols=158  Identities=9%  Similarity=0.077  Sum_probs=91.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~   89 (299)
                      ++|.+.+|+.++|.||||+|||||+++|++.+.+  +.+.+++.++....   ....++.      ...+.++...  ..
T Consensus        21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~---~~~~~~~------~i~~v~q~~~~~~~   91 (274)
T PRK13644         21 INLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFS---KLQGIRK------LVGIVFQNPETQFV   91 (274)
T ss_pred             eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccc---cHHHHHh------heEEEEEChhhhcc
Confidence            5677899999999999999999999999997654  55666665442210   0011110      0011111100  00


Q ss_pred             chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                      .....+.+. +..  ...........+++..+++.+++... ......||+|+.|++....++..-.+            
T Consensus        92 ~~tv~enl~-~~~--~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~------------  156 (274)
T PRK13644         92 GRTVEEDLA-FGP--ENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPE------------  156 (274)
T ss_pred             cchHHHHHH-hhH--HHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCC------------
Confidence            011112111 000  00000112234556677788888654 45568899999999987665544222            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                               -+..+|+....++.+...|.+.|++.+
T Consensus       157 ---------lllLDEPt~gLD~~~~~~l~~~l~~l~  183 (274)
T PRK13644        157 ---------CLIFDEVTSMLDPDSGIAVLERIKKLH  183 (274)
T ss_pred             ---------EEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence                     244666777777888888888887764

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=98.71  E-value=4e-08  Score=98.19  Aligned_cols=151  Identities=14%  Similarity=0.148  Sum_probs=88.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      .++.+++++.++|+|++|||||||++.|++...+  +.+.+++.++...    ....++..+      .+.++....-..
T Consensus       362 i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~----~~~~~~~~i------~~v~Q~~~lf~~  431 (582)
T PRK11176        362 INFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDY----TLASLRNQV------ALVSQNVHLFND  431 (582)
T ss_pred             ceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhc----CHHHHHhhc------eEEccCceeecc
Confidence            5667899999999999999999999999998764  6677787666432    111111111      111111111112


Q ss_pred             hhhHHHhhcCccchhhcCCCc-cHHHHHhhhcccCCHHH-HH-----------HhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLE-GVKRELQELVQDVDLNY-IA-----------KVTNGFSGADLTEICQRACKLAIRQSI  158 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p-~~~~R~~~l~~~v~l~~-LA-----------~~t~glSggDl~~Lv~~A~~~a~~r~~  158 (299)
                      +.++.+.-         .+.+ -.++++...++.+++++ +.           ..-..+||||.|+++...++..-.+  
T Consensus       432 Ti~~Ni~~---------~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~--  500 (582)
T PRK11176        432 TIANNIAY---------ARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSP--  500 (582)
T ss_pred             hHHHHHhc---------CCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCC--
Confidence            22222211         0001 12334444444444422 22           2234589999999987654433111  


Q ss_pred             HHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        159 ETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                         .+..+|+....++.|...+.++|.+..
T Consensus       501 -------------------ililDEptsaLD~~t~~~i~~~l~~~~  527 (582)
T PRK11176        501 -------------------ILILDEATSALDTESERAIQAALDELQ  527 (582)
T ss_pred             -------------------EEEEECccccCCHHHHHHHHHHHHHHh
Confidence                               244677888888899999999998874

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=98.71  E-value=1.5e-08  Score=90.54  Aligned_cols=160  Identities=13%  Similarity=0.279  Sum_probs=89.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.||||||||||+++|++...       .+.+.+++.++.... . ....++.      ...+.++..
T Consensus        22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~-~-~~~~~~~------~i~~~~q~~   93 (250)
T PRK14240         22 INLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD-I-DVNQLRK------RVGMVFQQP   93 (250)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc-c-chHHHhc------cEEEEecCC
Confidence            567788999999999999999999999999643       466777776553210 0 0001110      001122111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      ........+.+..... ... ........+++..+++.+++     ..+......||+|++|+++...++..-.+     
T Consensus        94 ~~~~~t~~~ni~~~~~-~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~-----  166 (250)
T PRK14240         94 NPFPMSIYDNVAYGPR-THG-IKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPE-----  166 (250)
T ss_pred             ccCcccHHHHHHHHHH-hcC-CCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCC-----
Confidence            1111111122211000 000 00001223445555555543     23455668899999999887665543211     


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                      .+..+|+....++.+.+.|.++|++.+
T Consensus       167 ----------------llllDEP~~~LD~~~~~~l~~~l~~~~  193 (250)
T PRK14240        167 ----------------VLLMDEPTSALDPISTLKIEELIQELK  193 (250)
T ss_pred             ----------------EEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence                            244667777778888888988888774

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=98.71  E-value=9.9e-09  Score=92.74  Aligned_cols=157  Identities=13%  Similarity=0.103  Sum_probs=89.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~   89 (299)
                      ++|.+.+++.++|+||||||||||+++|++.+.+  +.+.+++.++...    .....+.      ...+.++...  ..
T Consensus        32 vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----~~~~~~~------~i~~v~q~~~~~~~  101 (267)
T PRK15112         32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFG----DYSYRSQ------RIRMIFQDPSTSLN  101 (267)
T ss_pred             eeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCC----chhhHhc------cEEEEecCchhhcC
Confidence            5678899999999999999999999999998754  5566766554211    0000000      0011111110  00


Q ss_pred             ch-hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-HHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PS-ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-NYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRRER  166 (299)
Q Consensus        90 ~~-~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~  166 (299)
                      .. ...+.+.. ....... .......+++..+++.+++ .... .....||+|++++++...++..-.           
T Consensus       102 ~~~tv~~~l~~-~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p-----------  168 (267)
T PRK15112        102 PRQRISQILDF-PLRLNTD-LEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRP-----------  168 (267)
T ss_pred             cchhHHHHHHH-HHHhccC-CCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCC-----------
Confidence            00 11111110 0000000 0012234566677888888 4443 455789999999988765544311           


Q ss_pred             HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                .-+..+|+....++.+.+.|.+.|.+.
T Consensus       169 ----------~lllLDEPt~~LD~~~~~~l~~~l~~~  195 (267)
T PRK15112        169 ----------KVIIADEALASLDMSMRSQLINLMLEL  195 (267)
T ss_pred             ----------CEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence                      124466777777788888888888775

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=98.71  E-value=9.7e-09  Score=96.49  Aligned_cols=156  Identities=12%  Similarity=0.153  Sum_probs=90.1

Q ss_pred             hhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773         13 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP   90 (299)
Q Consensus        13 ~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~   90 (299)
                      -++|.+.+++.++|.||||||||||+++|++...+  +.+.+++.++.......   ..... .  +...+.++....-+
T Consensus        16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~---~~~~~-~--~~i~~v~q~~~l~~   89 (352)
T PRK11144         16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGI---CLPPE-K--RRIGYVFQDARLFP   89 (352)
T ss_pred             EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccc---ccchh-h--CCEEEEcCCcccCC
Confidence            36788899999999999999999999999998754  55666665543210000   00000 0  00011111111100


Q ss_pred             -hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 -SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        91 -~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                       ....+.+.. .  .      .....+++..+++.+++.. +.+....||||+.|+++...++..-.+            
T Consensus        90 ~~tv~enl~~-~--~------~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~------------  148 (352)
T PRK11144         90 HYKVRGNLRY-G--M------AKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPE------------  148 (352)
T ss_pred             CCcHHHHHHh-h--h------hhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCC------------
Confidence             111111110 0  0      0122456667788888854 456668999999999987665543211            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                               .+..+|+....++.+.+.|.+.|+++.
T Consensus       149 ---------llLLDEPts~LD~~~~~~l~~~L~~l~  175 (352)
T PRK11144        149 ---------LLLMDEPLASLDLPRKRELLPYLERLA  175 (352)
T ss_pred             ---------EEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence                     244566667777777788877777653

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=98.71  E-value=1.1e-08  Score=90.53  Aligned_cols=154  Identities=11%  Similarity=0.169  Sum_probs=90.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC-c
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-P   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-~   90 (299)
                      +++.+.+++.++|.|+||+|||||+++|++.+.+  +.+++++.++.....  ....+          .+.++..... .
T Consensus        18 is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i----------~~~~q~~~~~~~   85 (235)
T cd03299          18 VSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDI----------SYVPQNYALFPH   85 (235)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCE----------EEEeecCccCCC
Confidence            4677889999999999999999999999997664  556677665532100  00000          1111111111 0


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+.. ... .. ........+++..+++.+++.. +......||+|+.++++...++..-.+             
T Consensus        86 ~t~~e~l~~-~~~-~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~-------------  149 (235)
T cd03299          86 MTVYKNIAY-GLK-KR-KVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPK-------------  149 (235)
T ss_pred             ccHHHHHHH-HHH-Hc-CCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCC-------------
Confidence            111111110 000 00 0011233445567777788855 455667899999999987765554222             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                              .+..+++....++.+.+.|.+.|++.
T Consensus       150 --------llllDEPt~gLD~~~~~~l~~~l~~~  175 (235)
T cd03299         150 --------ILLLDEPFSALDVRTKEKLREELKKI  175 (235)
T ss_pred             --------EEEECCCcccCCHHHHHHHHHHHHHH
Confidence                    24466677777788888888888775

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.71  E-value=1.9e-08  Score=89.94  Aligned_cols=160  Identities=12%  Similarity=0.231  Sum_probs=89.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.|+||+|||||+++|++...       .+.+.+++.++.....  ....++      ....+.++..
T Consensus        23 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~--~~~~~~------~~i~~~~q~~   94 (251)
T PRK14270         23 INLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDV--DVVELR------KRVGMVFQKP   94 (251)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccc--cHHHHH------hheEEEecCC
Confidence            467788999999999999999999999999753       3667777765532100  000010      0011222211


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH----H-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL----N-YIAKVTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l----~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      ........+.+..... ... ........+++..+++.+++    . .+......||+|++++++...++..-.      
T Consensus        95 ~~~~~tv~enl~~~~~-~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p------  166 (251)
T PRK14270         95 NPFPMSIYDNVAYGPR-IHG-IKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKP------  166 (251)
T ss_pred             CcCCCcHHHHHHhHHH-hcC-CCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCC------
Confidence            1111111122210000 000 00011223445555666554    2 244566889999999998766554311      


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                     ..+..+|+....++.+...|.+.|++..
T Consensus       167 ---------------~llllDEP~~~LD~~~~~~l~~~L~~~~  194 (251)
T PRK14270        167 ---------------DVILMDEPTSALDPISTLKIEDLMVELK  194 (251)
T ss_pred             ---------------CEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence                           1244667777777888888888887763

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.70  E-value=1.3e-08  Score=92.48  Aligned_cols=161  Identities=9%  Similarity=0.116  Sum_probs=89.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KSS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~~   89 (299)
                      ++|.+.+++.++|.||||||||||+++|++...+  +.+.+++.++...........++.      ...+.++..  ...
T Consensus        26 is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~------~i~~~~q~~~~~~~   99 (280)
T PRK13649         26 VNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRK------KVGLVFQFPESQLF   99 (280)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHh------heEEEeeChhhhhc
Confidence            5677899999999999999999999999997654  556666655432100000011110      001111110  000


Q ss_pred             chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-H-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-Y-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                      .....+.+..... ...  .......+++..+++.+++. . +......||+|++|+++...++..-.+           
T Consensus       100 ~~tv~e~l~~~~~-~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~-----------  165 (280)
T PRK13649        100 EETVLKDVAFGPQ-NFG--VSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPK-----------  165 (280)
T ss_pred             cccHHHHHHHHHH-HcC--CCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC-----------
Confidence            0111222210000 000  00112334556667777774 3 456668899999999886654443111           


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                .+..+|+....++.+.+.|.+.|++.+
T Consensus       166 ----------lllLDEPt~~LD~~~~~~l~~~l~~~~  192 (280)
T PRK13649        166 ----------ILVLDEPTAGLDPKGRKELMTLFKKLH  192 (280)
T ss_pred             ----------EEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence                      244667777777888888888887763

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=98.70  E-value=1.2e-08  Score=86.98  Aligned_cols=154  Identities=16%  Similarity=0.228  Sum_probs=92.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+..|+.+.|.||||+||||++|+||..+.+  +.+++++.+....... ..+.+.-+|..         ..-...-
T Consensus        21 VSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~-vrr~IGVl~~e---------~glY~Rl   90 (245)
T COG4555          21 VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSF-VRRKIGVLFGE---------RGLYARL   90 (245)
T ss_pred             eeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHH-HhhhcceecCC---------cChhhhh
Confidence            5788899999999999999999999999998764  6678887776543111 11111111110         0000001


Q ss_pred             hhhHHHh---hcCccchhhcCCCccHHHHHhhhcccCCH-HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIV---EVPNITWEDIGGLEGVKRELQELVQDVDL-NYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        92 ~~~~~l~---~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                      +.++.+.   ++..      ....+.+.|.+.+.+.+++ +.+.++..+||-|..|++..+.++.--             
T Consensus        91 T~rEnl~~Fa~L~~------l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~-------------  151 (245)
T COG4555          91 TARENLKYFARLNG------LSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHD-------------  151 (245)
T ss_pred             hHHHHHHHHHHHhh------hhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcC-------------
Confidence            1111111   1111      1124568889999999999 456678899999999998765433211             


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                           |   ..+..+++....+..+...|.+-+.+.+
T Consensus       152 -----P---~i~vlDEP~sGLDi~~~r~~~dfi~q~k  180 (245)
T COG4555         152 -----P---SILVLDEPTSGLDIRTRRKFHDFIKQLK  180 (245)
T ss_pred             -----C---CeEEEcCCCCCccHHHHHHHHHHHHHhh
Confidence                 1   1133455555556666655555555554

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=98.70  E-value=2.8e-08  Score=101.18  Aligned_cols=150  Identities=17%  Similarity=0.203  Sum_probs=89.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+++|+.++|+|++|||||||++.|++...+  +.+.+++.++...    ....++..+      .+.++....-..
T Consensus       472 isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~----~~~~lr~~i------~~v~Q~~~lf~g  541 (686)
T TIGR03797       472 VSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGL----DVQAVRRQL------GVVLQNGRLMSG  541 (686)
T ss_pred             eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcC----CHHHHHhcc------EEEccCCccCcc
Confidence            4677899999999999999999999999997754  6788888777543    111222211      112211111112


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HH-----------HhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IA-----------KVTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA-----------~~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      +.++.+.-         .+ |-.++++..+++..++++ +.           ..-..+||||.|+++...++..-.    
T Consensus       542 TI~eNi~~---------~~-~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p----  607 (686)
T TIGR03797       542 SIFENIAG---------GA-PLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKP----  607 (686)
T ss_pred             cHHHHHhc---------CC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC----
Confidence            22222211         11 112333444444444432 22           233569999999998765443211    


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                       .-+..+|+....++-+.+.+.++|++..
T Consensus       608 -----------------~iLiLDEpTS~LD~~te~~i~~~L~~~~  635 (686)
T TIGR03797       608 -----------------RILLFDEATSALDNRTQAIVSESLERLK  635 (686)
T ss_pred             -----------------CEEEEeCCccCCCHHHHHHHHHHHHHhC
Confidence                             1244677788888888899999888763

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=98.70  E-value=1.1e-08  Score=90.47  Aligned_cols=155  Identities=15%  Similarity=0.137  Sum_probs=90.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC-c
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-P   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-~   90 (299)
                      .++.+.+++.++|+|+||+|||||+++|++...+  +.+.+++.++.....  ....+          .+.++....- .
T Consensus        19 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i----------~~~~q~~~~~~~   86 (232)
T cd03300          19 VSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPV----------NTVFQNYALFPH   86 (232)
T ss_pred             ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcce----------EEEecccccCCC
Confidence            4567889999999999999999999999998754  556677655432110  00001          1111111110 0


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+..... ...  .+.....+++..+++.+++.. +......+|+|++++++...++..-.+             
T Consensus        87 ~t~~~nl~~~~~-~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~-------------  150 (232)
T cd03300          87 LTVFENIAFGLR-LKK--LPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPK-------------  150 (232)
T ss_pred             CcHHHHHHHHHH-hcC--CCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence            011111110000 000  001123445566777777744 556668999999999887665543221             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                              -+..+++....++.+.+.|.+.|+++.
T Consensus       151 --------llllDEP~~gLD~~~~~~l~~~l~~~~  177 (232)
T cd03300         151 --------VLLLDEPLGALDLKLRKDMQLELKRLQ  177 (232)
T ss_pred             --------EEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence                    244667777778888899998888764

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.70  E-value=5.9e-09  Score=94.71  Aligned_cols=156  Identities=12%  Similarity=0.113  Sum_probs=89.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~   89 (299)
                      ++|.+.+|+.++|.|+||+|||||+++|++...  .+.+.+++.++...    ....++   .   ...+.++...  ..
T Consensus        26 v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~----~~~~~~---~---~i~~v~q~~~~~~~   95 (277)
T PRK13642         26 VSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAE----NVWNLR---R---KIGMVFQNPDNQFV   95 (277)
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcC----CHHHHh---c---ceEEEEECHHHhhc
Confidence            567789999999999999999999999999775  45566776554321    111111   0   0011111100  00


Q ss_pred             chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                      .....+.+...   ....-.......+++..+++.+++..+ ...+..||+|+.+++....++..-.+            
T Consensus        96 ~~tv~eni~~~---~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~------------  160 (277)
T PRK13642         96 GATVEDDVAFG---MENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPE------------  160 (277)
T ss_pred             cCCHHHHHHhh---HHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCC------------
Confidence            11111222100   000000011223456677777888544 45568899999999887665543222            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                               -+..+|+....++.+.+.|.+.|.+.
T Consensus       161 ---------llllDEPt~~LD~~~~~~l~~~l~~l  186 (277)
T PRK13642        161 ---------IIILDESTSMLDPTGRQEIMRVIHEI  186 (277)
T ss_pred             ---------EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence                     23456666777778888888887665

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=98.69  E-value=2.7e-08  Score=89.50  Aligned_cols=164  Identities=10%  Similarity=0.100  Sum_probs=92.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC-----CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA-----NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS   88 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~-----~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~   88 (299)
                      ++|.+.+++.++|+||||||||||+++|++...+     +.+.+++.++....  ........+.   ....+.++....
T Consensus        23 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~--~~~~~~~~~~---~~i~~~~q~~~~   97 (262)
T PRK09984         23 VDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREG--RLARDIRKSR---ANTGYIFQQFNL   97 (262)
T ss_pred             ceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEeccccc--ccchhHHHHH---hheEEEcccccc
Confidence            5677889999999999999999999999998753     56777776553210  0000011110   000112211111


Q ss_pred             Cc-hhhhHHHhhcCccchhh----cCC-CccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         89 SP-SALRETIVEVPNITWED----IGG-LEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        89 ~~-~~~~~~l~~l~~~l~~~----~~r-~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      .. ....+.+........+.    ... .+...+++..+++.+++.. +.+....||+|+.|++....++..-.+     
T Consensus        98 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~-----  172 (262)
T PRK09984         98 VNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAK-----  172 (262)
T ss_pred             ccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCC-----
Confidence            11 11122221100000000    000 1233456777888888854 456668899999999887655543111     


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                      .+..+|+....++-+.+.|.+.|++.
T Consensus       173 ----------------llllDEPt~~LD~~~~~~l~~~l~~~  198 (262)
T PRK09984        173 ----------------VILADEPIASLDPESARIVMDTLRDI  198 (262)
T ss_pred             ----------------EEEecCccccCCHHHHHHHHHHHHHH
Confidence                            24466677777777888888888766

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.69  E-value=5e-09  Score=94.84  Aligned_cols=159  Identities=12%  Similarity=0.071  Sum_probs=89.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~   89 (299)
                      ++|.+.+++.++|.||||||||||+++|++.+.+  +.+.+++.++...  ......++.      ...+.++...  ..
T Consensus        20 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~--~~~~~~~~~------~i~~v~q~~~~~~~   91 (271)
T PRK13638         20 LNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYS--KRGLLALRQ------QVATVFQDPEQQIF   91 (271)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccc--cCCHHHHHh------heEEEeeChhhccc
Confidence            5677899999999999999999999999997754  5566776655210  000001110      0011111100  00


Q ss_pred             chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                      .....+.+.. .  ....-.......+++..+++.+++..+. .....||+|+.|++....++..-.+            
T Consensus        92 ~~~~~~~l~~-~--~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~------------  156 (271)
T PRK13638         92 YTDIDSDIAF-S--LRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQAR------------  156 (271)
T ss_pred             cccHHHHHHH-H--HHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCC------------
Confidence            0001111110 0  0000001112234556677777875544 4457899999999987665543221            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                               .+..+|+....++.+...|.+.|++.+
T Consensus       157 ---------lllLDEPt~~LD~~~~~~l~~~l~~~~  183 (271)
T PRK13638        157 ---------YLLLDEPTAGLDPAGRTQMIAIIRRIV  183 (271)
T ss_pred             ---------EEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence                     244667777778888888888888764

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=98.69  E-value=2.7e-08  Score=87.05  Aligned_cols=150  Identities=17%  Similarity=0.208  Sum_probs=85.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...+  +.+.+++.++...    ....++      +...+.++.......
T Consensus        23 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----~~~~~~------~~i~~~~q~~~l~~~   92 (221)
T cd03244          23 ISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKI----GLHDLR------SRISIIPQDPVLFSG   92 (221)
T ss_pred             eEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhC----CHHHHh------hhEEEECCCCccccc
Confidence            5677899999999999999999999999997653  5566666544321    000110      000111111111111


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH------------HhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA------------KVTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA------------~~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      ...+.+..    .    ...  ..++....++.+++....            .....||+|++++++...++..-.    
T Consensus        93 tv~enl~~----~----~~~--~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p----  158 (221)
T cd03244          93 TIRSNLDP----F----GEY--SDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS----  158 (221)
T ss_pred             hHHHHhCc----C----CCC--CHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC----
Confidence            11111110    0    001  123334444445553322            356789999999988766554311    


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                       ..+..+|+....++.+.+.|.+.|++.+
T Consensus       159 -----------------~llllDEP~~~LD~~~~~~l~~~l~~~~  186 (221)
T cd03244         159 -----------------KILVLDEATASVDPETDALIQKTIREAF  186 (221)
T ss_pred             -----------------CEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence                             1244667777778888889999988764

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=98.69  E-value=1.9e-08  Score=88.52  Aligned_cols=157  Identities=16%  Similarity=0.224  Sum_probs=86.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-----CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS   88 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-----~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~   88 (299)
                      ++|.+.+++.++|+||||||||||+++|++.+.     .+.+.+++.++..       .   . +.  +...+.++....
T Consensus        26 vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~-------~---~-~~--~~i~~~~q~~~~   92 (226)
T cd03234          26 VSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP-------D---Q-FQ--KCVAYVRQDDIL   92 (226)
T ss_pred             ceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh-------H---H-hc--ccEEEeCCCCcc
Confidence            467789999999999999999999999999765     3456666544310       0   0 00  000111111111


Q ss_pred             Cc-hhhhHHHhhcCccchhhcCCCccHHHHHhh-hcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         89 SP-SALRETIVEVPNITWEDIGGLEGVKRELQE-LVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRRE  165 (299)
Q Consensus        89 ~~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~-l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~  165 (299)
                      .. ....+.+...................+... +++.+++..+. .....||+|+.++++...++..-.+         
T Consensus        93 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~---------  163 (226)
T cd03234          93 LPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPK---------  163 (226)
T ss_pred             CcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCC---------
Confidence            11 111122210000000000000111223334 67777775554 4557899999999987665544222         


Q ss_pred             HHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        166 REKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                  -+..+|+....++.+...|.+.+.+.+
T Consensus       164 ------------illlDEP~~gLD~~~~~~~~~~l~~~~  190 (226)
T cd03234         164 ------------VLILDEPTSGLDSFTALNLVSTLSQLA  190 (226)
T ss_pred             ------------EEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence                        244566777778888888888887763

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=98.69  E-value=2.4e-08  Score=90.69  Aligned_cols=150  Identities=16%  Similarity=0.202  Sum_probs=87.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCchh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSA   92 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~~   92 (299)
                      ++|.+.+++.++|+|++|+|||||+++|++.+. .+.+.+++.++...    ....++.      ...+.++....-...
T Consensus        23 isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~----~~~~lr~------~i~~v~q~~~lf~~t   92 (275)
T cd03289          23 ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSV----PLQKWRK------AFGVIPQKVFIFSGT   92 (275)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhC----CHHHHhh------hEEEECCCcccchhh
Confidence            567789999999999999999999999999764 45567777655321    1111110      011222111111111


Q ss_pred             hhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCC-----------CCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         93 LRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNG-----------FSGADLTEICQRACKLAIRQSIET  160 (299)
Q Consensus        93 ~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~g-----------lSggDl~~Lv~~A~~~a~~r~~~~  160 (299)
                      ..+.+..  .      .  +...+++...++.+++.. +.....+           ||+|++|+++...++..-.+    
T Consensus        93 v~~nl~~--~------~--~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~----  158 (275)
T cd03289          93 FRKNLDP--Y------G--KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK----  158 (275)
T ss_pred             HHHHhhh--c------c--CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC----
Confidence            1122210  0      0  111234555666777754 4445555           99999999987665543211    


Q ss_pred             HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                       -+..+++....++.+.+.|.+.|.+..
T Consensus       159 -----------------illlDEpts~LD~~~~~~l~~~l~~~~  185 (275)
T cd03289         159 -----------------ILLLDEPSAHLDPITYQVIRKTLKQAF  185 (275)
T ss_pred             -----------------EEEEECccccCCHHHHHHHHHHHHHhc
Confidence                             233556666777778888888887653

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.69  E-value=1.8e-08  Score=87.66  Aligned_cols=155  Identities=14%  Similarity=0.173  Sum_probs=87.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHH-HHhhhhcCC-C
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTME-NFRYAMGKS-S   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-~~~~~~~~~-~   89 (299)
                      ++|.+..++.+.|.|+||+||||++|+|++....  +.|.+++.++......+          .++.- .+.++.... .
T Consensus        22 vsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~----------r~r~Gi~~VPegR~iF~   91 (237)
T COG0410          22 VSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHE----------RARLGIAYVPEGRRIFP   91 (237)
T ss_pred             eeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHH----------HHhCCeEeCcccccchh
Confidence            6788899999999999999999999999998874  67888888887642211          11110 111100000 0


Q ss_pred             chhhhHHHhhcCccchhhcCCCc-cHHHH-HhhhcccC-CHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLE-GVKRE-LQELVQDV-DLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRE  165 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p-~~~~R-~~~l~~~v-~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~  165 (299)
                      .-+..+.+.-      ....+.. ....+ .+.+.+-+ .+.+ ...+...+|||+.|.|+...++.+-.+         
T Consensus        92 ~LTVeENL~~------g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pk---------  156 (237)
T COG0410          92 RLTVEENLLL------GAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPK---------  156 (237)
T ss_pred             hCcHHHHHhh------hhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCC---------
Confidence            0011111110      0000000 01111 22222222 1333 334446699999999987766655332         


Q ss_pred             HHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773        166 REKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P  205 (299)
                                  .+..+|+.....|+--+++.+++++.+.
T Consensus       157 ------------lLLLDEPs~GLaP~iv~~I~~~i~~l~~  184 (237)
T COG0410         157 ------------LLLLDEPSEGLAPKIVEEIFEAIKELRK  184 (237)
T ss_pred             ------------EEEecCCccCcCHHHHHHHHHHHHHHHH
Confidence                        2446666677777777888888887763

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=98.69  E-value=2.2e-08  Score=87.38  Aligned_cols=158  Identities=14%  Similarity=0.157  Sum_probs=90.3

Q ss_pred             hhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773         13 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP   90 (299)
Q Consensus        13 ~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~   90 (299)
                      -++|.+.+ +.++|.||||+|||||+++|++.+.+  +.+.+++.++.....   ......+.   ....+.++......
T Consensus        16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~---~~~~~~~~---~~i~~~~q~~~~~~   88 (214)
T cd03297          16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRK---KINLPPQQ---RKIGLVFQQYALFP   88 (214)
T ss_pred             CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccc---hhhhhhHh---hcEEEEecCCccCC
Confidence            45778889 99999999999999999999998754  455666654421100   00011110   00011121111111


Q ss_pred             -hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 -SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        91 -~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                       ....+.+......     .......+++..+++.+++... ......||+|+.+++....++..-.+            
T Consensus        89 ~~t~~~~l~~~~~~-----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~------------  151 (214)
T cd03297          89 HLNVRENLAFGLKR-----KRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPE------------  151 (214)
T ss_pred             CCCHHHHHHHHHhh-----CCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCC------------
Confidence             1111222110000     0011234456677888888654 45568899999999987665543221            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                               -+..+|+....++.+.+.|.+.|.+.
T Consensus       152 ---------llllDEPt~~LD~~~~~~l~~~l~~~  177 (214)
T cd03297         152 ---------LLLLDEPFSALDRALRLQLLPELKQI  177 (214)
T ss_pred             ---------EEEEcCCcccCCHHHHHHHHHHHHHH
Confidence                     24466777777888888888888765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.68  E-value=4.2e-08  Score=98.16  Aligned_cols=151  Identities=18%  Similarity=0.264  Sum_probs=87.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCchh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSA   92 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~~   92 (299)
                      ++|.+++|+.++|+|++|||||||++.|++... .+.+.+++.++...    ....++..+      .+.++....-..+
T Consensus       369 i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~----~~~~lr~~i------~~v~Q~~~LF~~T  438 (588)
T PRK11174        369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELREL----DPESWRKHL------SWVGQNPQLPHGT  438 (588)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccC----CHHHHHhhe------EEecCCCcCCCcC
Confidence            467789999999999999999999999999872 25577787766432    112222111      1222211111122


Q ss_pred             hhHHHhhcCccchhhcCCCc-cHHHHHhhhcccCCHH------------HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         93 LRETIVEVPNITWEDIGGLE-GVKRELQELVQDVDLN------------YIAKVTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        93 ~~~~l~~l~~~l~~~~~r~p-~~~~R~~~l~~~v~l~------------~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      .++.+.-         .+ | -.++++...++..+++            .+...-..+||||+|+++.+.++..-.+   
T Consensus       439 I~eNI~~---------g~-~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~---  505 (588)
T PRK11174        439 LRDNVLL---------GN-PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQ---  505 (588)
T ss_pred             HHHHhhc---------CC-CCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCC---
Confidence            2222211         00 1 1122333333333332            1233445699999999987654433111   


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P  205 (299)
                                        -+..+|+....+.-|.+.+.++|.+..+
T Consensus       506 ------------------IliLDE~TSaLD~~te~~i~~~l~~~~~  533 (588)
T PRK11174        506 ------------------LLLLDEPTASLDAHSEQLVMQALNAASR  533 (588)
T ss_pred             ------------------EEEEeCCccCCCHHHHHHHHHHHHHHhC
Confidence                              2446778888888899999999988743

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.68  E-value=2.2e-08  Score=89.47  Aligned_cols=159  Identities=11%  Similarity=0.243  Sum_probs=87.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|+|+||+|||||+++|++...       .+.+.+++.++...     ......+..   ...+..+..
T Consensus        23 ~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~-----~~~~~~~~~---~i~~~~q~~   94 (251)
T PRK14251         23 ISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGS-----KMDLVELRK---EVGMVFQQP   94 (251)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccc-----cchHHHhhc---cEEEEecCC
Confidence            567789999999999999999999999999764       45666776554211     000000000   001111111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCcc-HHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLEG-VKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIET  160 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~-~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~  160 (299)
                      ..-.....+.+.. ......  ...++ ..+++..+++.+++     ..+......||+|++|+++...++..-.     
T Consensus        95 ~~~~~tv~enl~~-~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p-----  166 (251)
T PRK14251         95 TPFPFSVYDNVAY-GLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRP-----  166 (251)
T ss_pred             ccCCCcHHHHHHH-HHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCC-----
Confidence            1111111222210 000000  00011 22344455555555     2234556789999999998766554311     


Q ss_pred             HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                      ..+..+|+....++.+.+.|.+.|++.+
T Consensus       167 ----------------~llllDEP~~~LD~~~~~~l~~~l~~~~  194 (251)
T PRK14251        167 ----------------KVVLLDEPTSALDPISSSEIEETLMELK  194 (251)
T ss_pred             ----------------CEEEecCCCccCCHHHHHHHHHHHHHHH
Confidence                            1244666777777888888888888764

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.68  E-value=3.3e-08  Score=99.06  Aligned_cols=150  Identities=13%  Similarity=0.149  Sum_probs=88.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      .++.+++++.++|+|++|||||||++.|++...+  +.+.+++.++....    ...+++.+      .+.++....-+.
T Consensus       360 i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~----~~~l~~~i------~~v~Q~~~lF~~  429 (592)
T PRK10790        360 INLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLS----HSVLRQGV------AMVQQDPVVLAD  429 (592)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCC----HHHHHhhe------EEEccCCccccc
Confidence            4567899999999999999999999999997764  56778887764321    11111111      122221111112


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH------------HHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY------------IAKVTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~------------LA~~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      +.++.+.-         .+ +-.++++..+++.+++++            +......+||||.|+++...++..-.+   
T Consensus       430 Ti~~NI~~---------~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~---  496 (592)
T PRK10790        430 TFLANVTL---------GR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQ---  496 (592)
T ss_pred             hHHHHHHh---------CC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCC---
Confidence            22222211         01 111233333444444322            222335699999999987654442111   


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                        -+..+|+....++-|.+.+.++|++..
T Consensus       497 ------------------illlDEpts~LD~~t~~~i~~~l~~~~  523 (592)
T PRK10790        497 ------------------ILILDEATANIDSGTEQAIQQALAAVR  523 (592)
T ss_pred             ------------------EEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence                              244677778888888888999888764

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.68  E-value=1.4e-08  Score=100.49  Aligned_cols=161  Identities=16%  Similarity=0.221  Sum_probs=89.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|+||||||||||+|+|++.+.       .+.+.+++.++...    ....+..+..  +...+.++..
T Consensus        28 isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~----~~~~~~~~~~--~~ig~v~Q~~  101 (529)
T PRK15134         28 VSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHA----SEQTLRGVRG--NKIAMIFQEP  101 (529)
T ss_pred             eEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccC----CHHHHHHHhc--CceEEEecCc
Confidence            567789999999999999999999999999875       35566766554321    1111110000  0001111110


Q ss_pred             C--CCc-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH----HHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 K--SSP-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY----IAKVTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        87 ~--~~~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~----LA~~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      .  ... ....+.+... ...... ....+..+|+..+++.+++..    +.++...||||+.|+++...++..-.+   
T Consensus       102 ~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~---  176 (529)
T PRK15134        102 MVSLNPLHTLEKQLYEV-LSLHRG-MRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPE---  176 (529)
T ss_pred             hhhcCchhhHHHHHHHH-HHHhcC-CCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCC---
Confidence            0  000 0111111100 000000 011234567777888888742    456778999999999988766553211   


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                        .+..+|+....++.+.+.|.+.|++.
T Consensus       177 ------------------llllDEPt~~LD~~~~~~l~~~l~~l  202 (529)
T PRK15134        177 ------------------LLIADEPTTALDVSVQAQILQLLREL  202 (529)
T ss_pred             ------------------EEEEcCCCCccCHHHHHHHHHHHHHH
Confidence                              23455666666666666766666654

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.68  E-value=1e-08  Score=91.02  Aligned_cols=160  Identities=12%  Similarity=0.110  Sum_probs=91.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.|+||+|||||+++|++...  .+.+.+++.++...    ....   ....  ...+.++...... 
T Consensus        21 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~----~~~~---~~~~--~i~~~~q~~~~~~~   91 (242)
T TIGR03411        21 LSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGL----PEHQ---IARA--GIGRKFQKPTVFEN   91 (242)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCC----CHHH---HHhc--CeeEeccccccCCC
Confidence            567889999999999999999999999999764  45667776544221    1010   0000  0011111111111 


Q ss_pred             hhhhHHHhhcCccchhh----c--CCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVPNITWED----I--GGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIR  163 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~----~--~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~  163 (299)
                      ....+.+... ......    +  ........++..+++.+++.. +......||+|++++++...++..-.+       
T Consensus        92 ~tv~~nl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~-------  163 (242)
T TIGR03411        92 LTVFENLELA-LPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPK-------  163 (242)
T ss_pred             CCHHHHHHHh-hhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC-------
Confidence            1111221110 000000    0  001123456667777778854 445667899999999887654433111       


Q ss_pred             HHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        164 REREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                    -+..+|+....++.+.+.|.+.|++..
T Consensus       164 --------------~lllDEPt~~LD~~~~~~l~~~l~~~~  190 (242)
T TIGR03411       164 --------------LLLLDEPVAGMTDEETEKTAELLKSLA  190 (242)
T ss_pred             --------------EEEecCCccCCCHHHHHHHHHHHHHHh
Confidence                          244667777778888888888888764

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=98.68  E-value=1.9e-08  Score=88.22  Aligned_cols=161  Identities=14%  Similarity=0.186  Sum_probs=89.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.|+||+|||||+++|++.+.  .+.+.+++.++....    ........   ....+.++...... 
T Consensus        24 vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~----~~~~~~~~---~~i~~~~q~~~~~~~   96 (220)
T TIGR02982        24 INLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGAS----EKELVQLR---RNIGYIFQAHNLLGF   96 (220)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcC----HhHHHHHH---hheEEEcCChhhcCC
Confidence            466788999999999999999999999999765  455666665543210    00000000   00011111111000 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+..... .... ....+...++..+++.+++.. +......||+|+.+++....++..-.+             
T Consensus        97 ~t~~~n~~~~~~-~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~-------------  161 (220)
T TIGR02982        97 LTARQNVQMALE-LQPN-LSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPK-------------  161 (220)
T ss_pred             CCHHHHHHHHHH-hccC-CCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence            011111110000 0000 001123456677888888854 456668899999999886654433111             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                              .+..+|+....++-+.+.+.+.|++.+
T Consensus       162 --------illlDEP~~~LD~~~~~~l~~~l~~~~  188 (220)
T TIGR02982       162 --------LVLADEPTAALDSKSGRDVVELMQKLA  188 (220)
T ss_pred             --------EEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence                    244566666777778888888887753

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=98.67  E-value=1.2e-08  Score=90.05  Aligned_cols=155  Identities=12%  Similarity=0.143  Sum_probs=87.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.++|.|+||||||||+++|++.+.+  +.+.+++.++....   .....+      ....+.++.......
T Consensus        19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~---~~~~~~------~~i~~~~q~~~~~~~   89 (230)
T TIGR03410        19 VSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLP---PHERAR------AGIAYVPQGREIFPR   89 (230)
T ss_pred             eeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCC---HHHHHH------hCeEEeccCCcccCC
Confidence            5678899999999999999999999999998764  55666665543210   000000      000111111111111


Q ss_pred             -hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCC-HHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 -ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVD-LNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        92 -~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~-l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                       ...+.+.....   .  . .....++...+++.++ +.. +......||+|+.++++...++..-.+            
T Consensus        90 ~tv~~~l~~~~~---~--~-~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~------------  151 (230)
T TIGR03410        90 LTVEENLLTGLA---A--L-PRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPK------------  151 (230)
T ss_pred             CcHHHHHHHHHH---h--c-CcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCC------------
Confidence             11122211000   0  0 0112223344444444 333 445567899999999887654443111            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                               .+..+|+....++.+.+.|.+.|.+.+
T Consensus       152 ---------illlDEPt~~LD~~~~~~l~~~l~~~~  178 (230)
T TIGR03410       152 ---------LLLLDEPTEGIQPSIIKDIGRVIRRLR  178 (230)
T ss_pred             ---------EEEecCCcccCCHHHHHHHHHHHHHHH
Confidence                     244667777778888889988887763

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.67  E-value=2.4e-08  Score=89.33  Aligned_cols=161  Identities=11%  Similarity=0.206  Sum_probs=88.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.|+||||||||+++|++...       .+.+.+++.++.....  ....++   .   ...+.++..
T Consensus        24 is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~--~~~~~~---~---~i~~v~q~~   95 (251)
T PRK14244         24 INLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT--NVVLLR---A---KVGMVFQKP   95 (251)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc--chHHHh---h---hEEEEecCc
Confidence            567789999999999999999999999999754       4556666654432100  000010   0   001112111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-----HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-----YIAKVTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-----~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      ..-.....+.+..... ............+++..+++.+++.     .+......||+|++|+++...++..-.+     
T Consensus        96 ~~~~~tv~~ni~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~-----  169 (251)
T PRK14244         96 NPFPKSIYDNVAYGPK-LHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPT-----  169 (251)
T ss_pred             ccccCCHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCC-----
Confidence            1111111121110000 0000000012233445566666662     2345567899999999887655443111     


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                      .+..+|+....++.+.+.|.+.|++.+
T Consensus       170 ----------------llllDEPt~~LD~~~~~~l~~~l~~~~  196 (251)
T PRK14244        170 ----------------MLLMDEPCSALDPVATNVIENLIQELK  196 (251)
T ss_pred             ----------------EEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence                            244666777777888888888888764

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=98.67  E-value=1e-08  Score=90.49  Aligned_cols=154  Identities=18%  Similarity=0.209  Sum_probs=87.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC------CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA------NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK   87 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~------~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~   87 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...+      +.+.+++.++...          ....  ....+.++...
T Consensus         5 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~----------~~~~--~~i~~~~q~~~   72 (230)
T TIGR02770         5 LNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL----------SIRG--RHIATIMQNPR   72 (230)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh----------hhhh--heeEEEecCch
Confidence            5678899999999999999999999999998754      4566665544211          0000  00011111110


Q ss_pred             --CCc-hhhhHHHhhcCccchhhcCC-CccHHHHHhhhcccCCHH----HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         88 --SSP-SALRETIVEVPNITWEDIGG-LEGVKRELQELVQDVDLN----YIAKVTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        88 --~~~-~~~~~~l~~l~~~l~~~~~r-~p~~~~R~~~l~~~v~l~----~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                        ... ....+.+...   .. .... .....+++..+++.+++.    .+......||+|+.|+++...++..-.    
T Consensus        73 ~~~~~~~t~~~~~~~~---~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p----  144 (230)
T TIGR02770        73 TAFNPLFTMGNHAIET---LR-SLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEP----  144 (230)
T ss_pred             hhcCcccCHHHHHHHH---HH-HcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCC----
Confidence              000 0111111100   00 0000 112234566677777774    344556789999999998765543311    


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                       ..+..+|+....++.+.+.|.+.|++..
T Consensus       145 -----------------~vllLDEPt~~LD~~~~~~l~~~l~~~~  172 (230)
T TIGR02770       145 -----------------PFLIADEPTTDLDVVNQARVLKLLRELR  172 (230)
T ss_pred             -----------------CEEEEcCCccccCHHHHHHHHHHHHHHH
Confidence                             1244667777777788888888887753

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=98.67  E-value=2.7e-08  Score=89.02  Aligned_cols=160  Identities=12%  Similarity=0.227  Sum_probs=88.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...       .+.+.+++.++....  .....++.      ...+.++..
T Consensus        25 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~--~~~~~~~~------~i~~v~q~~   96 (253)
T PRK14242         25 ISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH--VDVVELRR------RVGMVFQKP   96 (253)
T ss_pred             eeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc--cCHHHHhh------cEEEEecCC
Confidence            567789999999999999999999999999742       456777766543210  00001110      001111111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-----HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-----YIAKVTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-----~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      ..-.....+.+..... ... ........+++..+++.+++.     .+......||+|+.|+++...++..-.+     
T Consensus        97 ~~~~~tv~enl~~~~~-~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~-----  169 (253)
T PRK14242         97 NPFPKSIFENVAYGLR-VNG-VKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPE-----  169 (253)
T ss_pred             CCCcCcHHHHHHHHHH-HcC-CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCC-----
Confidence            1111111122110000 000 000012234555566666652     2345567899999999887655433111     


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                      -+..+|+....++.+.+.|.+.|++.+
T Consensus       170 ----------------llllDEPt~~LD~~~~~~l~~~l~~~~  196 (253)
T PRK14242        170 ----------------VLLMDEPASALDPIATQKIEELIHELK  196 (253)
T ss_pred             ----------------EEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence                            244667777778888888888888764

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=98.67  E-value=1.5e-08  Score=90.59  Aligned_cols=161  Identities=15%  Similarity=0.164  Sum_probs=89.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchh-----hhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPE-----LLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~-----l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.||||||||||+++|++...+  +.+.+++.+     +...    ..........  ....+..+..
T Consensus        22 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~----~~~~~~~~~~--~~i~~~~q~~   95 (253)
T TIGR02323        22 VSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQL----SEAERRRLMR--TEWGFVHQNP   95 (253)
T ss_pred             ceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccC----CHHHHHHhhh--cceEEEEeCc
Confidence            5678899999999999999999999999998754  445555433     2111    0000000000  0001111111


Q ss_pred             CC--Cc-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH--HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KS--SP-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN--YIAKVTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        87 ~~--~~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~--~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      ..  .. ....+.+........  ........+++..+++.+++.  .+......+|+|++++++...++..-.+     
T Consensus        96 ~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~-----  168 (253)
T TIGR02323        96 RDGLRMRVSAGANIGERLMAIG--ARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPR-----  168 (253)
T ss_pred             ccccCccccHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCC-----
Confidence            00  00 000111110000000  000112345666777778873  4566778899999999987765544221     


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                      .+..+|+....++.+.+.|.+.|.+.
T Consensus       169 ----------------vlllDEP~~~LD~~~~~~l~~~l~~~  194 (253)
T TIGR02323       169 ----------------LVFMDEPTGGLDVSVQARLLDLLRGL  194 (253)
T ss_pred             ----------------EEEEcCCCccCCHHHHHHHHHHHHHH
Confidence                            24466777777888888888888765

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.67  E-value=2.9e-08  Score=90.00  Aligned_cols=168  Identities=13%  Similarity=0.164  Sum_probs=90.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc----------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ----------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRY   83 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~----------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~   83 (299)
                      ++|.+.+++.++|+||||||||||+++|++.+.          .+.+.+++.++...    .....+..      ..+.+
T Consensus        20 vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~------~~~v~   89 (272)
T PRK13547         20 LSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI----DAPRLARL------RAVLP   89 (272)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccC----CHHHHHhh------cEEec
Confidence            467789999999999999999999999999765          34566666544221    11111110      01112


Q ss_pred             hhcC-CCchhhhHHHhhcCccchhhcCCC-ccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         84 AMGK-SSPSALRETIVEVPNITWEDIGGL-EGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIET  160 (299)
Q Consensus        84 ~~~~-~~~~~~~~~l~~l~~~l~~~~~r~-p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~  160 (299)
                      +... .......+.+.............. ....+++..+++.+++..+. +....||+|+++++....++....+.-. 
T Consensus        90 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~-  168 (272)
T PRK13547         90 QAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHD-  168 (272)
T ss_pred             ccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccc-
Confidence            1111 011112222211000000000001 12234566777788886544 4557899999999987766552100000 


Q ss_pred             HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                 ......-+..+|+....++.+.+.|.+.|.+.
T Consensus       169 -----------~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  200 (272)
T PRK13547        169 -----------AAQPPRYLLLDEPTAALDLAHQHRLLDTVRRL  200 (272)
T ss_pred             -----------cCCCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence                       00001124456667777788888888877765

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.67  E-value=2.2e-08  Score=89.52  Aligned_cols=160  Identities=11%  Similarity=0.192  Sum_probs=88.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|+|+||||||||+++|++...       .+.+.+++.++.....  ....++.      ...+.++..
T Consensus        23 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~--~~~~~~~------~i~~~~q~~   94 (252)
T PRK14256         23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV--DPVSIRR------RVGMVFQKP   94 (252)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC--ChHHhhc------cEEEEecCC
Confidence            467789999999999999999999999999863       3667777665532100  0001100      001122111


Q ss_pred             CCCc-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-----HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSP-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-----YIAKVTNGFSGADLTEICQRACKLAIRQSIET  160 (299)
Q Consensus        87 ~~~~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-----~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~  160 (299)
                      ..-. ....+.+.. ...... .....+..++...+++.+++.     .+......||+|++|+++..+++..-.     
T Consensus        95 ~~~~~~tv~enl~~-~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p-----  167 (252)
T PRK14256         95 NPFPAMSIYDNVIA-GYKLNG-RVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKP-----  167 (252)
T ss_pred             CCCCcCcHHHHHHh-HHHhcC-CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCC-----
Confidence            1111 111122210 000000 000112234555666666652     233455789999999998776554311     


Q ss_pred             HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                      ..+..+|+....++.+.+.+.+.|++..
T Consensus       168 ----------------~llllDEP~~gLD~~~~~~l~~~l~~~~  195 (252)
T PRK14256        168 ----------------EVILMDEPASALDPISTLKIEELIEELK  195 (252)
T ss_pred             ----------------CEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence                            1244667777777788888888887764

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=98.67  E-value=2.6e-08  Score=89.01  Aligned_cols=163  Identities=17%  Similarity=0.212  Sum_probs=90.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC-ch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-PS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-~~   91 (299)
                      ++|.+.+++.++|.|+||+|||||+++|++... .+.+.+++.++...    ....++.      ...+.++..... ..
T Consensus        15 vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~----~~~~~~~------~i~~v~q~~~~~~~~   84 (248)
T PRK03695         15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAW----SAAELAR------HRAYLSQQQTPPFAM   84 (248)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcC----CHHHHhh------heEEecccCccCCCc
Confidence            567889999999999999999999999999753 34566666554321    1111110      001111111111 11


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLA  170 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~  170 (299)
                      ...+.+... ...   ........+++..+++.+++... .+....||+|+.|++....++.......            
T Consensus        85 tv~~nl~~~-~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~------------  148 (248)
T PRK03695         85 PVFQYLTLH-QPD---KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDI------------  148 (248)
T ss_pred             cHHHHHHhc-Ccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccc------------
Confidence            111222111 000   00111224566677888888544 4566889999999988766554200000            


Q ss_pred             CCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        171 GNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                       .+. ...+..+|+....++.+...|.+.|++++
T Consensus       149 -~p~-p~llllDEPt~~LD~~~~~~l~~~L~~~~  180 (248)
T PRK03695        149 -NPA-GQLLLLDEPMNSLDVAQQAALDRLLSELC  180 (248)
T ss_pred             -CCC-CCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence             000 01244566667777778888888887663

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=98.66  E-value=2.3e-08  Score=86.54  Aligned_cols=149  Identities=17%  Similarity=0.161  Sum_probs=88.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC-c
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-P   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-~   90 (299)
                      ++|.+.+++.++|.|+||+|||||+++|++...+  +.+.+++.++...    . ..    +.  ....+.++..... .
T Consensus        19 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----~-~~----~~--~~i~~~~q~~~~~~~   87 (201)
T cd03231          19 LSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQ----R-DS----IA--RGLLYLGHAPGIKTT   87 (201)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc----c-HH----hh--hheEEeccccccCCC
Confidence            5677899999999999999999999999998654  4555665443211    0 00    11  0001111111111 1


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+....        . ....+++..+++.+++..+. .....||+|+.++++...++..-.              
T Consensus        88 ~tv~e~l~~~~--------~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p--------------  144 (201)
T cd03231          88 LSVLENLRFWH--------A-DHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGR--------------  144 (201)
T ss_pred             cCHHHHHHhhc--------c-cccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCC--------------
Confidence            11122221100        0 01245666777778885543 455789999999988755443311              


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                             ..+..+|+....++.+.+.|.+.|++.
T Consensus       145 -------~llllDEPt~~LD~~~~~~l~~~l~~~  171 (201)
T cd03231         145 -------PLWILDEPTTALDKAGVARFAEAMAGH  171 (201)
T ss_pred             -------CEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence                   134466777777788888888888765

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=98.66  E-value=4.7e-08  Score=99.73  Aligned_cols=151  Identities=14%  Similarity=0.199  Sum_probs=88.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      .++.+++|+.++|+|++|||||||++.|++...+  +.+.+++.++....    ...++...      .+.++....-..
T Consensus       484 i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~----~~~lr~~i------~~v~Q~~~lf~~  553 (694)
T TIGR03375       484 VSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQID----PADLRRNI------GYVPQDPRLFYG  553 (694)
T ss_pred             eeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCC----HHHHHhcc------EEECCChhhhhh
Confidence            5677899999999999999999999999997764  66778877664321    11111110      111111110011


Q ss_pred             hhhHHHhhcCccchhhcCCCc-cHHHHHhhhcccCCHHH-H-----------HHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLE-GVKRELQELVQDVDLNY-I-----------AKVTNGFSGADLTEICQRACKLAIRQSI  158 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p-~~~~R~~~l~~~v~l~~-L-----------A~~t~glSggDl~~Lv~~A~~~a~~r~~  158 (299)
                      +.++.+.-         . .| -.++++...++..++.+ +           ...-..+||||.|+++...++..-.   
T Consensus       554 TI~eNi~~---------~-~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p---  620 (694)
T TIGR03375       554 TLRDNIAL---------G-APYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDP---  620 (694)
T ss_pred             hHHHHHhC---------C-CCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC---
Confidence            12222210         0 01 11233333444444422 2           2233469999999998765443211   


Q ss_pred             HHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773        159 ETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P  205 (299)
                                        .-+..+|+....++.+.+.+.++|.+..+
T Consensus       621 ------------------~iliLDE~Ts~LD~~te~~i~~~l~~~~~  649 (694)
T TIGR03375       621 ------------------PILLLDEPTSAMDNRSEERFKDRLKRWLA  649 (694)
T ss_pred             ------------------CEEEEeCCCCCCCHHHHHHHHHHHHHHhC
Confidence                              12456778888889999999999988743

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.66  E-value=1.3e-08  Score=102.59  Aligned_cols=161  Identities=16%  Similarity=0.217  Sum_probs=93.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KSS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~~   89 (299)
                      ++|.+.+++.++|+|+||||||||+++|++.+.  .+.+.+++.++...    .....+.+..   ...+.++..  ...
T Consensus       343 vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~----~~~~~~~~~~---~i~~v~Q~~~~~l~  415 (623)
T PRK10261        343 VSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL----SPGKLQALRR---DIQFIFQDPYASLD  415 (623)
T ss_pred             eEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC----CHHHHHHhcC---CeEEEecCchhhcC
Confidence            577889999999999999999999999999875  45667776655321    1111111100   001111111  011


Q ss_pred             c-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-H-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 P-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-Y-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRER  166 (299)
Q Consensus        90 ~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~  166 (299)
                      . ....+.+.. +..... ........+++..+++.+++. . +.+....||||++|+++...++..-.+          
T Consensus       416 ~~~tv~~~l~~-~~~~~~-~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~----------  483 (623)
T PRK10261        416 PRQTVGDSIME-PLRVHG-LLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPK----------  483 (623)
T ss_pred             CCCCHHHHHHH-HHHHcC-CCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCC----------
Confidence            1 111122211 000000 000112345677888888883 3 556678999999999998766543211          


Q ss_pred             HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                 -+..+|+....++.+.+.+.+.|++++
T Consensus       484 -----------llllDEPts~LD~~~~~~i~~ll~~l~  510 (623)
T PRK10261        484 -----------VIIADEAVSALDVSIRGQIINLLLDLQ  510 (623)
T ss_pred             -----------EEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence                       244566677777778888888876653

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=98.66  E-value=2.6e-08  Score=88.93  Aligned_cols=165  Identities=18%  Similarity=0.192  Sum_probs=91.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhhccc-cccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWF-GESEANVRDIFDKVTMENFRYAMGKSSP   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~-g~~~~~i~~~f~~a~~~~~~~~~~~~~~   90 (299)
                      ++|.+.+++.++|.||||+|||||+++|++.+.+  +.+.+++.++..... .........+..   ...+.++......
T Consensus        22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~---~i~~v~q~~~~~~   98 (250)
T PRK11264         22 IDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQ---HVGFVFQNFNLFP   98 (250)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhh---hEEEEecCcccCC
Confidence            5677899999999999999999999999998654  556666655432100 000001111110   0012221111111


Q ss_pred             -hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 -SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        91 -~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                       ....+.+.........  .......+++..+++.+++.. +......||+|++|+++...++..-.+            
T Consensus        99 ~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~------------  164 (250)
T PRK11264         99 HRTVLENIIEGPVIVKG--EPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPE------------  164 (250)
T ss_pred             CCCHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCC------------
Confidence             1122222110000000  001122345566777777754 445668899999999987665543211            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                               -+..+|+....++.+.+.|.+.|.+..
T Consensus       165 ---------lllLDEPt~~LD~~~~~~l~~~l~~~~  191 (250)
T PRK11264        165 ---------VILFDEPTSALDPELVGEVLNTIRQLA  191 (250)
T ss_pred             ---------EEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence                     244667777778888888888887764

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=98.66  E-value=1.9e-08  Score=92.77  Aligned_cols=163  Identities=10%  Similarity=0.088  Sum_probs=90.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhhcc-cc------------cc----HHHHHHHHH
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMW-FG------------ES----EANVRDIFD   74 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~-~g------------~~----~~~i~~~f~   74 (299)
                      ++|.+.+++.++|.||||||||||+++|++.+.+  +.+.+++.++.... .+            ..    ......+. 
T Consensus        26 vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  104 (305)
T PRK13651         26 VSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIR-  104 (305)
T ss_pred             eEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHH-
Confidence            5778899999999999999999999999997654  55556544331100 00            00    00011110 


Q ss_pred             HHHHHHHhhhhc--CCCchhhhHHHhhcCccchhhcCCC-ccHHHHHhhhcccCCHH-H-HHHhcCCCCHHHHHHHHHHH
Q psy13773         75 KVTMENFRYAMG--KSSPSALRETIVEVPNITWEDIGGL-EGVKRELQELVQDVDLN-Y-IAKVTNGFSGADLTEICQRA  149 (299)
Q Consensus        75 ~a~~~~~~~~~~--~~~~~~~~~~l~~l~~~l~~~~~r~-p~~~~R~~~l~~~v~l~-~-LA~~t~glSggDl~~Lv~~A  149 (299)
                        +...+.++..  ........+.+. +.  ... .... ....+|+..+++.+++. . +.+....||||++|+++...
T Consensus       105 --~~ig~v~Q~~~~~l~~~tv~e~i~-~~--~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~  178 (305)
T PRK13651        105 --RRVGVVFQFAEYQLFEQTIEKDII-FG--PVS-MGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAG  178 (305)
T ss_pred             --hceEEEeeCcccccccccHHHHHH-hh--HHH-cCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHH
Confidence              0001111110  001111112221 10  000 0111 23356777888888883 4 45666899999999998766


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        150 CKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       150 ~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                      ++..-.+                     -+..+|+....++.+.+.|.+.|++.+
T Consensus       179 aL~~~P~---------------------lLlLDEPt~~LD~~~~~~l~~~l~~l~  212 (305)
T PRK13651        179 ILAMEPD---------------------FLVFDEPTAGLDPQGVKEILEIFDNLN  212 (305)
T ss_pred             HHHhCCC---------------------EEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence            5543222                     244566666777777778888777653

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=98.66  E-value=2e-08  Score=90.65  Aligned_cols=161  Identities=17%  Similarity=0.207  Sum_probs=89.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CC-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KS-   88 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~-   88 (299)
                      ++|.+.+++.++|.||||||||||+++|++...+  +.+.+++.++...    .......+..   ...+.++..  .. 
T Consensus        30 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~----~~~~~~~~~~---~i~~v~q~~~~~~~  102 (265)
T TIGR02769        30 VSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQL----DRKQRRAFRR---DVQLVFQDSPSAVN  102 (265)
T ss_pred             ceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccc----CHHHHHHHhh---ceEEEecChhhhcC
Confidence            5677899999999999999999999999998754  5566666554321    0011100000   001111110  00 


Q ss_pred             CchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-HH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         89 SPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-YI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRER  166 (299)
Q Consensus        89 ~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~  166 (299)
                      ......+.+....... .. .......+++..+++.+++. .+ ......||+|+.|+++...++..-.           
T Consensus       103 ~~~tv~~~l~~~~~~~-~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p-----------  169 (265)
T TIGR02769       103 PRMTVRQIIGEPLRHL-TS-LDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKP-----------  169 (265)
T ss_pred             CCCCHHHHHHHHHHHh-cC-CCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCC-----------
Confidence            0011112111000000 00 00112345666778888883 43 4566889999999988665443311           


Q ss_pred             HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                .-+..+|+....++.+.+.|.+.|++..
T Consensus       170 ----------~illLDEPt~~LD~~~~~~l~~~l~~~~  197 (265)
T TIGR02769       170 ----------KLIVLDEAVSNLDMVLQAVILELLRKLQ  197 (265)
T ss_pred             ----------CEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence                      1244566677777788888888887763

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=98.66  E-value=2.5e-08  Score=89.20  Aligned_cols=164  Identities=16%  Similarity=0.194  Sum_probs=91.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhhcc--cc----ccHHHHHHHHHHHHHHHHhhhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMW--FG----ESEANVRDIFDKVTMENFRYAM   85 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~--~g----~~~~~i~~~f~~a~~~~~~~~~   85 (299)
                      ++|.+.+++.++|.||||||||||+++|++...+  +.+.+++.++....  .+    ........+ .  +...+.++.
T Consensus        19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~-~--~~i~~v~q~   95 (252)
T TIGR03005        19 LNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQM-R--NKIGMVFQS   95 (252)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHH-h--hCeEEEecC
Confidence            5678899999999999999999999999997653  55666665543210  00    000111110 0  000111111


Q ss_pred             cCCC-chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         86 GKSS-PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIR  163 (299)
Q Consensus        86 ~~~~-~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~  163 (299)
                      .... .....+.+..... .... .......+++..+++.+++..+ ......||+|+.++++...++..-.+       
T Consensus        96 ~~~~~~~tv~~nl~~~~~-~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~-------  166 (252)
T TIGR03005        96 FNLFPHKTVLDNVTEAPV-LVLG-MARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPK-------  166 (252)
T ss_pred             cccCCCCcHHHHHHHHHH-HhcC-CCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCC-------
Confidence            1111 1111122111000 0000 0112233456677777888554 45567899999999887665543111       


Q ss_pred             HHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        164 REREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                    .+..+|+....++.+.+.|.+.|++.
T Consensus       167 --------------llllDEP~~~LD~~~~~~l~~~l~~~  192 (252)
T TIGR03005       167 --------------VMLFDEVTSALDPELVGEVLNVIRRL  192 (252)
T ss_pred             --------------EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence                          24466777777788888888888775

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.65  E-value=9.3e-08  Score=79.65  Aligned_cols=164  Identities=16%  Similarity=0.225  Sum_probs=88.5

Q ss_pred             eccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCC--eecccch-hhhhccccccHHHHHHHHHHHHHHH
Q psy13773          4 TYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGP-ELLTMWFGESEANVRDIFDKVTMEN   80 (299)
Q Consensus         4 ~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~--~i~i~~~-~l~~~~~g~~~~~i~~~f~~a~~~~   80 (299)
                      .+|...   -++|.++.++++.|+||+|+||||++|+|-.-....  .|.+.-. ++.+ ........+-++.+...-+ 
T Consensus        23 ~LpV~~---~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vd-l~~a~pr~vl~vRr~TiGy-   97 (235)
T COG4778          23 RLPVLR---NVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVD-LVTAEPREVLEVRRTTIGY-   97 (235)
T ss_pred             Eeeeee---ceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhh-hhccChHHHHHHHHhhhHH-
Confidence            345444   467889999999999999999999999998865543  3333211 1111 0111222222222221111 


Q ss_pred             HhhhhcCCCchhhhHHHhhcCccc------hhhc-CC--CccHHHHHhhhcccCCH-HH-HHHhcCCCCHHHHHHHHHHH
Q psy13773         81 FRYAMGKSSPSALRETIVEVPNIT------WEDI-GG--LEGVKRELQELVQDVDL-NY-IAKVTNGFSGADLTEICQRA  149 (299)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~~l------~~~~-~r--~p~~~~R~~~l~~~v~l-~~-LA~~t~glSggDl~~Lv~~A  149 (299)
                                  ..+++..+|...      .+.+ ..  ......|+..++..+++ +. .+.-+..||||+.|++-...
T Consensus        98 ------------VSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaR  165 (235)
T COG4778          98 ------------VSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIAR  165 (235)
T ss_pred             ------------HHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhh
Confidence                        112222221100      1111 11  23445667788888888 33 45566889999999987655


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773        150 CKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       150 ~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P  205 (299)
                      .+..-...                     +..+++..+.+.-+.+-..+-+.+.|.
T Consensus       166 gfivd~pI---------------------LLLDEPTasLDa~Nr~vVveli~e~Ka  200 (235)
T COG4778         166 GFIVDYPI---------------------LLLDEPTASLDATNRAVVVELIREAKA  200 (235)
T ss_pred             hhhccCce---------------------EEecCCcccccccchHHHHHHHHHHHh
Confidence            44332221                     223444455555555556666666554

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=98.65  E-value=3.3e-08  Score=101.04  Aligned_cols=150  Identities=14%  Similarity=0.129  Sum_probs=86.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      .++.+++|+.++|+|++|||||||++.|++...+  +.+.+++.++....    ...++..+      .+.++....-..
T Consensus       498 isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~----~~~lr~~i------~~v~Q~~~lf~g  567 (710)
T TIGR03796       498 FSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIP----REVLANSV------AMVDQDIFLFEG  567 (710)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCC----HHHHHhhe------eEEecCChhhhc
Confidence            4567899999999999999999999999997754  66788887764321    11111111      111111111111


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH------------HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN------------YIAKVTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~------------~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      +.++.+.-         .+....++++...++..+++            .+...-..+||||.|+++...++..-.+   
T Consensus       568 Ti~eNi~l---------~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~---  635 (710)
T TIGR03796       568 TVRDNLTL---------WDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPS---  635 (710)
T ss_pred             cHHHHhhC---------CCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCC---
Confidence            22222210         00001122222223322321            1334446699999999987655433111   


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                        -+..+|+....+..|.+.+.++|++.
T Consensus       636 ------------------iliLDEptS~LD~~te~~i~~~l~~~  661 (710)
T TIGR03796       636 ------------------ILILDEATSALDPETEKIIDDNLRRR  661 (710)
T ss_pred             ------------------EEEEECccccCCHHHHHHHHHHHHhc
Confidence                              24467778888888999999998763

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=98.65  E-value=2.5e-08  Score=90.08  Aligned_cols=160  Identities=12%  Similarity=0.169  Sum_probs=87.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.||||||||||+++|++...       .+.+.+++.++....  .....++.      ...+.++..
T Consensus        39 vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~--~~~~~~~~------~i~~v~q~~  110 (267)
T PRK14237         39 IDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE--INVYEMRK------HIGMVFQRP  110 (267)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc--CChHHHhc------ceEEEecCC
Confidence            567789999999999999999999999999764       466777766552110  00000110      001111111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      ..-.....+.+.. ...... .........++..+++.+++     ..+.+....||+|++++++...++..-.+     
T Consensus       111 ~~~~~tv~eni~~-~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~-----  183 (267)
T PRK14237        111 NPFAKSIYENITF-ALERAG-VKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPD-----  183 (267)
T ss_pred             ccccccHHHHHHh-HHHhcC-CCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCC-----
Confidence            1111111122111 000000 00001123444555555554     23455668899999999887654443111     


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                      .+..+++....++.+.+.+.+.|.+.+
T Consensus       184 ----------------lllLDEPt~~LD~~~~~~l~~~l~~~~  210 (267)
T PRK14237        184 ----------------ILLMDEPASALDPISTMQLEETMFELK  210 (267)
T ss_pred             ----------------EEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence                            244566667777777888888887764

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.65  E-value=1.8e-08  Score=88.58  Aligned_cols=160  Identities=15%  Similarity=0.167  Sum_probs=87.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~   89 (299)
                      ++|.+.+++.++|.||||||||||+++|++...+  +.+.+++.++...    ....... +.  +...+.++...  ..
T Consensus        24 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----~~~~~~~-~~--~~i~~~~q~~~~~~~   96 (228)
T cd03257          24 VSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKL----SRRLRKI-RR--KEIQMVFQDPMSSLN   96 (228)
T ss_pred             ceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccc----chhhHHH-hh--ccEEEEecCchhhcC
Confidence            4677899999999999999999999999997653  5566666554321    0000000 00  00011111110  00


Q ss_pred             -chhhhHHHhhcCccchhhcCCCc-cHHHHH-hhhcccCCH-H-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 -PSALRETIVEVPNITWEDIGGLE-GVKREL-QELVQDVDL-N-YIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRR  164 (299)
Q Consensus        90 -~~~~~~~l~~l~~~l~~~~~r~p-~~~~R~-~~l~~~v~l-~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~  164 (299)
                       .....+.+...   ......... ....+. ..+++.+++ . .+......||+|+.|++....++..-.+        
T Consensus        97 ~~~tv~~nl~~~---~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~--------  165 (228)
T cd03257          97 PRMTIGEQIAEP---LRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPK--------  165 (228)
T ss_pred             CcCCHHHHHHHH---HHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCC--------
Confidence             01111111100   000000001 111222 356667777 3 3456668899999999887655443111        


Q ss_pred             HHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        165 EREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                   .+..+|+....++.+.+.|.+.|++..
T Consensus       166 -------------lllLDEPt~~LD~~~~~~l~~~l~~~~  192 (228)
T cd03257         166 -------------LLIADEPTSALDVSVQAQILDLLKKLQ  192 (228)
T ss_pred             -------------EEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence                         244667777778888899999888763

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.65  E-value=2.4e-08  Score=91.17  Aligned_cols=158  Identities=11%  Similarity=0.223  Sum_probs=89.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.||||||||||+++|++...       .+.+.+++.++.....  ....++      +...+.++..
T Consensus        58 is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~--~~~~~~------~~i~~v~q~~  129 (285)
T PRK14254         58 VSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV--DPVALR------RRIGMVFQKP  129 (285)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc--chHhhh------ccEEEEecCC
Confidence            467789999999999999999999999999764       4566777655421100  000000      0001111111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      ........+.+... ....   .......+++..+++.+++     ..+......||+|++|+++...++..-.+     
T Consensus       130 ~l~~~tv~enl~~~-~~~~---~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~-----  200 (285)
T PRK14254        130 NPFPKSIYDNVAYG-LKIQ---GYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPE-----  200 (285)
T ss_pred             ccCcCCHHHHHHHH-HHHc---CCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCC-----
Confidence            11111111211100 0000   0011234455566666654     23456678999999999987665543111     


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                      -+..+|+....++.+.+.+.++|++.+
T Consensus       201 ----------------lLLLDEPts~LD~~~~~~l~~~L~~~~  227 (285)
T PRK14254        201 ----------------VILMDEPASALDPVATSKIEDLIEELA  227 (285)
T ss_pred             ----------------EEEEeCCCCCCCHHHHHHHHHHHHHHh
Confidence                            244667777788888888988888774

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.65  E-value=5.4e-08  Score=97.18  Aligned_cols=151  Identities=17%  Similarity=0.244  Sum_probs=88.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      +++.+++++.++|+||+|||||||++.|++...  .+.+.+++.++...    ....++..+      .+.++....-..
T Consensus       359 i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~----~~~~~r~~i------~~v~Q~~~lf~~  428 (574)
T PRK11160        359 LSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADY----SEAALRQAI------SVVSQRVHLFSA  428 (574)
T ss_pred             ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhC----CHHHHHhhe------eEEcccchhhcc
Confidence            456789999999999999999999999999775  46677887766432    111121111      111111110011


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-----------HHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-----------AKVTNGFSGADLTEICQRACKLAIRQSIET  160 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-----------A~~t~glSggDl~~Lv~~A~~~a~~r~~~~  160 (299)
                      +.++.+.-         .+....++++...++.+++++.           ......+|||+.|+++...++..-.+    
T Consensus       429 ti~~Ni~~---------~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~----  495 (574)
T PRK11160        429 TLRDNLLL---------AAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAP----  495 (574)
T ss_pred             cHHHHhhc---------CCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCC----
Confidence            11111110         0001122334444455555332           22445699999999987654433111    


Q ss_pred             HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                       -+..+|+....++.+.+.+.++|.+..
T Consensus       496 -----------------ililDE~ts~lD~~t~~~i~~~l~~~~  522 (574)
T PRK11160        496 -----------------LLLLDEPTEGLDAETERQILELLAEHA  522 (574)
T ss_pred             -----------------EEEEeCCcccCCHHHHHHHHHHHHHHc
Confidence                             244667778888889999999998774

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=98.65  E-value=3.5e-08  Score=88.21  Aligned_cols=160  Identities=14%  Similarity=0.235  Sum_probs=87.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+|+.++|.||||+|||||+++|++...       .+.+.+++.++.....  ....++   .   ...+.++..
T Consensus        24 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~--~~~~~~---~---~i~~v~q~~   95 (252)
T PRK14239         24 VSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT--DTVDLR---K---EIGMVFQQP   95 (252)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCccc--chHhhh---h---cEEEEecCC
Confidence            467788999999999999999999999998632       4667777665532100  000000   0   001111111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      ..-.....+.+... ..... ........+++..+++.+++     ..+......||+|++++++...++..-.+     
T Consensus        96 ~~~~~tv~enl~~~-~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~-----  168 (252)
T PRK14239         96 NPFPMSIYENVVYG-LRLKG-IKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPK-----  168 (252)
T ss_pred             ccCcCcHHHHHHHH-HHHcC-CCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCC-----
Confidence            11111111221100 00000 00001123444455555553     23456668899999999987665543211     


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                      .+..+|+....++.+.+.+.+.|++..
T Consensus       169 ----------------llllDEPt~~LD~~~~~~l~~~l~~~~  195 (252)
T PRK14239        169 ----------------IILLDEPTSALDPISAGKIEETLLGLK  195 (252)
T ss_pred             ----------------EEEEcCCccccCHHHHHHHHHHHHHHh
Confidence                            244666777777788888888887763

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.65  E-value=3.7e-08  Score=87.95  Aligned_cols=159  Identities=14%  Similarity=0.249  Sum_probs=85.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...       .+.+.+++.++....   ....++.      ...+.++..
T Consensus        22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~~------~i~~~~q~~   92 (249)
T PRK14253         22 INLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI---DVADLRI------KVGMVFQKP   92 (249)
T ss_pred             ceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccccc---chHHHHh------heeEEecCC
Confidence            557789999999999999999999999999765       355666665442110   0011110      001122111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      ........+.+..... ... ........+++..+++.+++     ..+......||+|+++++....++..-.      
T Consensus        93 ~~~~~tv~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p------  164 (249)
T PRK14253         93 NPFPMSIYENVAYGLR-AQG-IKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEP------  164 (249)
T ss_pred             CcCcccHHHHHHhHHH-hcC-CCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCC------
Confidence            1111111111110000 000 00001122344444444443     3345566789999999988765443311      


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                     ..+..+|+....++.+.+.+.+.|++..
T Consensus       165 ---------------~llllDEP~~~LD~~~~~~l~~~l~~~~  192 (249)
T PRK14253        165 ---------------DVILMDEPTSALDPIATHKIEELMEELK  192 (249)
T ss_pred             ---------------CEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence                           1244666777777788888888888764

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=98.65  E-value=4e-08  Score=86.52  Aligned_cols=145  Identities=12%  Similarity=0.109  Sum_probs=84.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...+  +.+.+++.++...             ..  ...+.      ...
T Consensus        41 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-------------~~--~~~~~------~~~   99 (224)
T cd03220          41 VSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-------------GL--GGGFN------PEL   99 (224)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-------------cc--cccCC------CCC
Confidence            4577899999999999999999999999997653  4555665433100             00  00000      000


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLA  170 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~  170 (299)
                      ...+.+..... ...  .......++...+++.+++... ......||+|+++++....++..-.               
T Consensus       100 tv~enl~~~~~-~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p---------------  161 (224)
T cd03220         100 TGRENIYLNGR-LLG--LSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEP---------------  161 (224)
T ss_pred             cHHHHHHHHHH-HcC--CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC---------------
Confidence            11111110000 000  0011223345566666777544 4455889999999987655443311               


Q ss_pred             CCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        171 GNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                            ..+..+|+....++.+...|.++|++.
T Consensus       162 ------~llllDEP~~gLD~~~~~~~~~~l~~~  188 (224)
T cd03220         162 ------DILLIDEVLAVGDAAFQEKCQRRLREL  188 (224)
T ss_pred             ------CEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence                  124466677777778888888888775

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.64  E-value=2.6e-08  Score=90.97  Aligned_cols=161  Identities=14%  Similarity=0.246  Sum_probs=88.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh-------cCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC-------QANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l-------~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.||||+|||||+++|++..       ..+.+.+++.++.....  ....++.      ...+.++..
T Consensus        58 vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~--~~~~~~~------~i~~v~q~~  129 (286)
T PRK14275         58 VNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT--DEVLLRK------KIGMVFQKP  129 (286)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhccc--chHHhhh------cEEEECCCC
Confidence            46778999999999999999999999999963       34556677655432100  0000110      001112111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      ........+.+.. ...... ........+++..+++.+++     +.+......||+|++|+++...++..-.+     
T Consensus       130 ~l~~~tv~enl~~-~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~-----  202 (286)
T PRK14275        130 NPFPKSIFDNIAY-GPRLHG-INDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPE-----  202 (286)
T ss_pred             CCCccCHHHHHHh-HHHhcC-CCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCC-----
Confidence            1111112222210 000000 00001123344445544443     23455668899999999987665543221     


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P  205 (299)
                                      .+..+|+....++.+.+.|.+.|++.+.
T Consensus       203 ----------------lllLDEPt~gLD~~~~~~l~~~L~~~~~  230 (286)
T PRK14275        203 ----------------ILLLDEPTSALDPKATAKIEDLIQELRG  230 (286)
T ss_pred             ----------------EEEEeCCCccCCHHHHHHHHHHHHHHhc
Confidence                            2446677777788888889888887643

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.64  E-value=2.9e-08  Score=89.23  Aligned_cols=160  Identities=13%  Similarity=0.212  Sum_probs=88.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.|+||+|||||+++|++...       .+.+.+++.++....  .....++.      ...+.++..
T Consensus        26 isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~--~~~~~~~~------~i~~v~q~~   97 (259)
T PRK14260         26 ISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPR--ININRLRR------QIGMVFQRP   97 (259)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccc--cchHhhhh------heEEEeccc
Confidence            567789999999999999999999999999764       355667665542110  00000100      001111111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      ........+.+... ..... .....+..++...+++.+++     ..+......||+|++++++...++..-.      
T Consensus        98 ~l~~~tv~enl~~~-~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p------  169 (259)
T PRK14260         98 NPFPMSIYENVAYG-VRISA-KLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKP------  169 (259)
T ss_pred             ccCCccHHHHHHHH-HHHhc-CCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCC------
Confidence            11111111111100 00000 00001223444455555554     2344566789999999998765553211      


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                     ..+..+|+....++.+.+.|.+.|++.+
T Consensus       170 ---------------~lllLDEPt~~LD~~~~~~l~~~l~~~~  197 (259)
T PRK14260        170 ---------------KVLLMDEPCSALDPIATMKVEELIHSLR  197 (259)
T ss_pred             ---------------CEEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence                           1245667777788888999999888764

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.64  E-value=1e-08  Score=93.43  Aligned_cols=158  Identities=8%  Similarity=0.076  Sum_probs=89.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~   89 (299)
                      ++|.+.+|+.++|+|+||+|||||+++|++.+.  .+.+.+++.++...  ......++.      ...+.++...  ..
T Consensus        25 vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~--~~~~~~~~~------~ig~v~q~~~~~~~   96 (283)
T PRK13636         25 ININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYS--RKGLMKLRE------SVGMVFQDPDNQLF   96 (283)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCC--cchHHHHHh------hEEEEecCcchhhc
Confidence            467789999999999999999999999999765  45667776654210  000011110      0011111110  00


Q ss_pred             chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                      .....+.+...   ....-.......+++..+++.+++..+ ......||+|++|++....++..-.+            
T Consensus        97 ~~tv~e~l~~~---~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~------------  161 (283)
T PRK13636         97 SASVYQDVSFG---AVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPK------------  161 (283)
T ss_pred             cccHHHHHHhH---HHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC------------
Confidence            11112222110   000000111224566778888888654 45568899999999987665543221            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                               -+..+|+....++.+.+.|.+.|++.
T Consensus       162 ---------lLilDEPt~gLD~~~~~~l~~~l~~l  187 (283)
T PRK13636        162 ---------VLVLDEPTAGLDPMGVSEIMKLLVEM  187 (283)
T ss_pred             ---------EEEEeCCccCCCHHHHHHHHHHHHHH
Confidence                     23355666666777777777777665

>KOG0731|consensus

Probab=98.64  E-value=3.6e-09  Score=105.98  Aligned_cols=53  Identities=21%  Similarity=0.233  Sum_probs=49.2

Q ss_pred             CCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCC-cccccCCCCCCCeeee
Q psy13773        207 VNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGP-NSAPANESGTGGILLM  262 (299)
Q Consensus       207 Vsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s-~~l~~g~~gtg~~ll~  262 (299)
                      |+.+||-|.++.|++|+|-|.+   ||+|+.|-..-.|-+ |+||.||||||||||-
T Consensus       308 V~FkDVAG~deAK~El~E~V~f---LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLA  361 (774)
T KOG0731|consen  308 VKFKDVAGVDEAKEELMEFVKF---LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLA  361 (774)
T ss_pred             CccccccCcHHHHHHHHHHHHH---hcCHHHHHHcCCcCcCceEEECCCCCcHHHHH
Confidence            9999999999999999999999   999999987666654 9999999999999995

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.64  E-value=4.4e-08  Score=89.03  Aligned_cols=159  Identities=13%  Similarity=0.197  Sum_probs=86.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.|+||+|||||+++|++...       .+.+.+++.++....   .   ...+..   ...+.++..
T Consensus        40 vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~---~---~~~~~~---~i~~v~q~~  110 (276)
T PRK14271         40 VSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYR---D---VLEFRR---RVGMLFQRP  110 (276)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccc---h---hHHHhh---heEEeccCC
Confidence            567789999999999999999999999999765       455667665543210   0   000000   001111111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-----HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-----YIAKVTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-----~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      ........+.+..... ... .........++..+++.+++.     .+......||+|++++++...++..-.+     
T Consensus       111 ~l~~~tv~eni~~~~~-~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~-----  183 (276)
T PRK14271        111 NPFPMSIMDNVLAGVR-AHK-LVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPE-----  183 (276)
T ss_pred             ccCCccHHHHHHHHHH-hcc-CCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCC-----
Confidence            1111111222211000 000 000011223444555555553     2345567899999999987665543111     


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                      -+..+|+.....+-+.+.|.+.|++.+
T Consensus       184 ----------------lllLDEPt~~LD~~~~~~l~~~L~~~~  210 (276)
T PRK14271        184 ----------------VLLLDEPTSALDPTTTEKIEEFIRSLA  210 (276)
T ss_pred             ----------------EEEEcCCcccCCHHHHHHHHHHHHHHh
Confidence                            244566667777778888888887763

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=98.64  E-value=3e-08  Score=87.09  Aligned_cols=161  Identities=17%  Similarity=0.215  Sum_probs=88.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccc--h--hhhhccccccHHHHHHHHHHHHHHHHhhhhcC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKG--P--ELLTMWFGESEANVRDIFDKVTMENFRYAMGK   87 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~--~--~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~   87 (299)
                      ++|.+.+++.++|.|+||+|||||+++|++.+.+  +.+.+++  .  ++...    ....+..+..  ....+.++...
T Consensus        27 vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~----~~~~~~~~~~--~~i~~~~q~~~  100 (224)
T TIGR02324        27 VSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA----SPREVLEVRR--KTIGYVSQFLR  100 (224)
T ss_pred             ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhc----CHHHHHHHHh--cceEEEecccc
Confidence            5677899999999999999999999999998754  4455542  1  22111    0111111000  00011111111


Q ss_pred             CCc-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-H-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         88 SSP-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-I-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRR  164 (299)
Q Consensus        88 ~~~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~  164 (299)
                      ... ....+.+.. .  +...-.......+++..+++.+++.. + ......||+|+.|+++...++..-.         
T Consensus       101 ~~~~~tv~e~l~~-~--~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p---------  168 (224)
T TIGR02324       101 VIPRVSALEVVAE-P--LLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADY---------  168 (224)
T ss_pred             cCCCccHHHHHHH-H--HHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCC---------
Confidence            111 111111111 0  00000001223456666777777743 3 4456889999999998766554311         


Q ss_pred             HHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        165 EREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                  ..+..+|+....++.+.+.|.+.|++++
T Consensus       169 ------------~llllDEPt~~LD~~~~~~l~~~l~~~~  196 (224)
T TIGR02324       169 ------------PILLLDEPTASLDAANRQVVVELIAEAK  196 (224)
T ss_pred             ------------CEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence                        1244667777777888888888888764

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.64  E-value=4.3e-08  Score=87.61  Aligned_cols=159  Identities=14%  Similarity=0.231  Sum_probs=88.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.||||+|||||+++|++..+       .+.+.+++.++.....  .....+.      ...+.++..
T Consensus        22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~--~~~~~~~------~i~~v~q~~   93 (250)
T PRK14245         22 ISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV--QVDELRK------NVGMVFQRP   93 (250)
T ss_pred             eeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccc--cHHHHhh------heEEEecCC
Confidence            567789999999999999999999999998532       3667777765532100  0000100      001111111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCc-cHHHHHhhhcccCCHH-----HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLE-GVKRELQELVQDVDLN-----YIAKVTNGFSGADLTEICQRACKLAIRQSIET  160 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p-~~~~R~~~l~~~v~l~-----~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~  160 (299)
                      ........+.+...   ....-...+ ...+++..+++.+++.     .+......||+|+++++....++..-.+    
T Consensus        94 ~~~~~tv~~nl~~~---~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~----  166 (250)
T PRK14245         94 NPFPKSIFENVAYG---LRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPS----  166 (250)
T ss_pred             ccCcccHHHHHHHH---HHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCC----
Confidence            11111111111100   000000001 1234455566666552     3445668899999999987665543111    


Q ss_pred             HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                       -+..+|+....++.+.+.|.+.|++.+
T Consensus       167 -----------------lllLDEPt~~LD~~~~~~l~~~l~~~~  193 (250)
T PRK14245        167 -----------------VLLMDEPASALDPISTAKVEELIHELK  193 (250)
T ss_pred             -----------------EEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence                             244666777777888888888888764

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.64  E-value=3.1e-08  Score=89.08  Aligned_cols=145  Identities=12%  Similarity=0.157  Sum_probs=86.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|+||||||||||+++|++.+.+  +.+.+++..+.         .++      ....+.++...... 
T Consensus        31 isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~---------~~~------~~i~~v~q~~~l~~~   95 (257)
T PRK11247         31 LDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA---------EAR------EDTRLMFQDARLLPW   95 (257)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH---------Hhh------CceEEEecCccCCCC
Confidence            5677889999999999999999999999998754  34444433221         000      00011111111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+.. .  .      .....+++..+++.+++.. +.+....||||+.|++....++..-.+             
T Consensus        96 ~tv~enl~~-~--~------~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~-------------  153 (257)
T PRK11247         96 KKVIDNVGL-G--L------KGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPG-------------  153 (257)
T ss_pred             CcHHHHHHh-c--c------cchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence            111121110 0  0      0112345667777788854 445668899999999887655443111             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                              .+..+|+....++.+.+.+.+.|++.
T Consensus       154 --------lllLDEPt~~LD~~~~~~l~~~L~~~  179 (257)
T PRK11247        154 --------LLLLDEPLGALDALTRIEMQDLIESL  179 (257)
T ss_pred             --------EEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence                    24466777777888888888888765

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=98.64  E-value=1.6e-08  Score=90.58  Aligned_cols=152  Identities=14%  Similarity=0.140  Sum_probs=87.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC------CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA------NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK   87 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~------~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~   87 (299)
                      ++|.+.+++.++|.|+||+|||||+++|++...+      +.+.+++.++...  ......+          .+.++...
T Consensus        22 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~~~i----------~~v~q~~~   89 (254)
T PRK10418         22 VSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRGRKI----------ATIMQNPR   89 (254)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccccceE----------EEEecCCc
Confidence            5677899999999999999999999999998754      5666766554210  0000001          11111110


Q ss_pred             --CCch-hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH----HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         88 --SSPS-ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY----IAKVTNGFSGADLTEICQRACKLAIRQSIET  160 (299)
Q Consensus        88 --~~~~-~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~----LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~  160 (299)
                        .... .....+...   + . ........+++..+++.+++..    +......||+|+.|+++...++..-.+    
T Consensus        90 ~~~~~~~~~~~~~~~~---~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~----  160 (254)
T PRK10418         90 SAFNPLHTMHTHARET---C-L-ALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAP----  160 (254)
T ss_pred             cccCccccHHHHHHHH---H-H-HcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCC----
Confidence              0000 000111000   0 0 0111223356667777777743    456668899999999987665543111    


Q ss_pred             HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                       -+..+|+....++.+.+.|.+.|++.
T Consensus       161 -----------------lLlLDEPt~~LD~~~~~~l~~~L~~~  186 (254)
T PRK10418        161 -----------------FIIADEPTTDLDVVAQARILDLLESI  186 (254)
T ss_pred             -----------------EEEEeCCCcccCHHHHHHHHHHHHHH
Confidence                             24456666677777788888887765

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=98.64  E-value=3.2e-08  Score=88.89  Aligned_cols=161  Identities=15%  Similarity=0.165  Sum_probs=88.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchh-----hhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPE-----LLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~-----l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.|+||+|||||+++|++.+.+  +.+.+++.+     +...    ...........  ...+.++..
T Consensus        25 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~----~~~~~~~~~~~--~i~~v~q~~   98 (258)
T PRK11701         25 VSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYAL----SEAERRRLLRT--EWGFVHQHP   98 (258)
T ss_pred             eeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccC----CHHHHHHHhhc--ceEEEeeCc
Confidence            5677899999999999999999999999998654  556666654     3211    11111110000  001111111


Q ss_pred             C--CCc-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH--HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 K--SSP-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN--YIAKVTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        87 ~--~~~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~--~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      .  ... ....+.+..-.....  ........+++..+++.+++.  .+......||+|++|+++...++..-.+     
T Consensus        99 ~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~-----  171 (258)
T PRK11701         99 RDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPR-----  171 (258)
T ss_pred             ccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCC-----
Confidence            0  000 000111110000000  000112344556677777773  4567778999999999887665543111     


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                      -+..+|+....++.+.+.+.+.|++.
T Consensus       172 ----------------llllDEPt~~LD~~~~~~l~~~l~~~  197 (258)
T PRK11701        172 ----------------LVFMDEPTGGLDVSVQARLLDLLRGL  197 (258)
T ss_pred             ----------------EEEEcCCcccCCHHHHHHHHHHHHHH
Confidence                            24466666777777888888887765

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.63  E-value=1.8e-07  Score=78.65  Aligned_cols=132  Identities=13%  Similarity=0.177  Sum_probs=77.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhcc--ccc----cHHHHHHHHHHHHHHHHhhhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMW--FGE----SEANVRDIFDKVTMENFRYAM   85 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~--~g~----~~~~i~~~f~~a~~~~~~~~~   85 (299)
                      +++....+..|.|+|.+|+||||++|||.-.-.  .+.|.+++.++.-+.  .|.    ..+.++.+...     +....
T Consensus        25 vSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~-----L~mVF   99 (256)
T COG4598          25 VSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTR-----LGMVF   99 (256)
T ss_pred             eeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHH-----hhHhh
Confidence            566677899999999999999999999987544  466778887774321  111    22333322221     11111


Q ss_pred             cCCCc--h-hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-HHHHhcCCCCHHHHHHHHHHHHHH
Q psy13773         86 GKSSP--S-ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-YIAKVTNGFSGADLTEICQRACKL  152 (299)
Q Consensus        86 ~~~~~--~-~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~LA~~t~glSggDl~~Lv~~A~~~  152 (299)
                      +..+-  . +..+.+.+.|-....  .+..+..+|++.++..+++. .-..++..+|||+.|++..+.++.
T Consensus       100 Q~FNLWsHmtvLeNViEaPvhVLg--~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLa  168 (256)
T COG4598         100 QHFNLWSHMTVLENVIEAPVHVLG--VSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALA  168 (256)
T ss_pred             hhcchhHHHHHHHHHHhcchHhhc--CCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHh
Confidence            11111  1 111222222211100  12345667888999999994 455777889999999987655443

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.63  E-value=3e-08  Score=89.04  Aligned_cols=157  Identities=12%  Similarity=0.261  Sum_probs=87.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.|+||+|||||+++|++...       .+.+.+++.++....  .....++.      ...+.++..
T Consensus        31 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~--~~~~~~~~------~i~~v~q~~  102 (258)
T PRK14268         31 VSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD--VDVVELRK------NVGMVFQKP  102 (258)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccccc--chHHHHhh------hEEEEecCC
Confidence            567789999999999999999999999999764       455666665442110  00000100      001111111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      ..-.....+.+.. .  .  .....+  ...+++..+++.+++     ..+......||+|++|+++...++..-.+   
T Consensus       103 ~~~~~tv~enl~~-~--~--~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~---  174 (258)
T PRK14268        103 NPFPMSIYDNVAY-G--P--RIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPK---  174 (258)
T ss_pred             ccCcccHHHHHHH-H--H--HHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCC---
Confidence            1111111122210 0  0  000111  123345556665554     23455567899999999987665543221   


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                        -+..+|+....++.+.+.|.+.|++.+
T Consensus       175 ------------------llllDEPt~~LD~~~~~~l~~~l~~l~  201 (258)
T PRK14268        175 ------------------IILFDEPTSALDPISTARIEDLIMNLK  201 (258)
T ss_pred             ------------------EEEEeCCCcccCHHHHHHHHHHHHHHh
Confidence                              244666777777888888888887763

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.63  E-value=2.3e-08  Score=92.72  Aligned_cols=163  Identities=10%  Similarity=0.094  Sum_probs=90.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhhccc---------cccHHHHHHHHHHHHHHHHh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWF---------GESEANVRDIFDKVTMENFR   82 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~---------g~~~~~i~~~f~~a~~~~~~   82 (299)
                      ++|.+.+++.++|+|+||||||||+++|++.+.+  +.+.+++.++...+.         .........+.   +...+.
T Consensus        45 vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ig~v  121 (320)
T PRK13631         45 ISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR---RRVSMV  121 (320)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHH---hcEEEE
Confidence            5677899999999999999999999999997754  667777655432100         00000011111   001112


Q ss_pred             hhhcC--CCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-H-HHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy13773         83 YAMGK--SSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-Y-IAKVTNGFSGADLTEICQRACKLAIRQSI  158 (299)
Q Consensus        83 ~~~~~--~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~  158 (299)
                      ++...  .-.....+.+..-+....   .......+|+..+++.+++. . +......||||++|+++...++..-.+  
T Consensus       122 ~Q~~~~~l~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~--  196 (320)
T PRK13631        122 FQFPEYQLFKDTIEKDIMFGPVALG---VKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPE--  196 (320)
T ss_pred             EECchhccccchHHHHHHhhHHhcC---CCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC--
Confidence            21110  001111222110000000   00112345667778888884 3 445568899999999987765544222  


Q ss_pred             HHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        159 ETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                         -+..+|+....++.+.+.|.+.|.+.
T Consensus       197 -------------------iLLLDEPtsgLD~~~~~~l~~~L~~l  222 (320)
T PRK13631        197 -------------------ILIFDEPTAGLDPKGEHEMMQLILDA  222 (320)
T ss_pred             -------------------EEEEECCccCCCHHHHHHHHHHHHHH
Confidence                               23355666666777777777777654

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.63  E-value=2.7e-08  Score=89.10  Aligned_cols=160  Identities=9%  Similarity=0.105  Sum_probs=89.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...+  +.+.+++.++...    .....   ...  ...+.++.......
T Consensus        24 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----~~~~~---~~~--~i~~~~q~~~~~~~   94 (255)
T PRK11300         24 VNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGL----PGHQI---ARM--GVVRTFQHVRLFRE   94 (255)
T ss_pred             eeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCC----CHHHH---Hhc--CeEEeccCcccCCC
Confidence            5677889999999999999999999999998654  5566666544321    00000   000  00111111111111


Q ss_pred             -hhhHHHhhcC----------ccch-hhcCC-CccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy13773         92 -ALRETIVEVP----------NITW-EDIGG-LEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQS  157 (299)
Q Consensus        92 -~~~~~l~~l~----------~~l~-~~~~r-~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~  157 (299)
                       ...+.+....          .... ..... .....+++..+++.+++.. +......||+|++|+++...++..-.+ 
T Consensus        95 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~-  173 (255)
T PRK11300         95 MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPE-  173 (255)
T ss_pred             CcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCC-
Confidence             1112111100          0000 00000 0122345666777888854 456668899999999887665443221 


Q ss_pred             HHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        158 IETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                          -+..+|+....++.+.+.+.+.|.+.
T Consensus       174 --------------------llllDEPt~~LD~~~~~~l~~~L~~~  199 (255)
T PRK11300        174 --------------------ILMLDEPAAGLNPKETKELDELIAEL  199 (255)
T ss_pred             --------------------EEEEcCCccCCCHHHHHHHHHHHHHH
Confidence                                24466667777778888888888765

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=98.63  E-value=1.1e-07  Score=94.77  Aligned_cols=152  Identities=15%  Similarity=0.207  Sum_probs=86.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      .++.+++|+.++|.|++|+|||||++.|++...+  +.+.+++.++...    ....++..+      .++++....-..
T Consensus       359 inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~----~~~~~~~~i------~~~~Q~~~lf~~  428 (576)
T TIGR02204       359 LNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQL----DPAELRARM------ALVPQDPVLFAA  428 (576)
T ss_pred             eeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhc----CHHHHHHhc------eEEccCCccccc
Confidence            4567899999999999999999999999998764  5677787665432    111122111      122221111112


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH------------HHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY------------IAKVTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~------------LA~~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      +.++.+.-         .+.....+++...++.+++.+            +......+||||.|+++...+...-..   
T Consensus       429 Ti~~Ni~~---------~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~---  496 (576)
T TIGR02204       429 SVMENIRY---------GRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAP---  496 (576)
T ss_pred             cHHHHHhc---------CCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCC---
Confidence            22222211         000001223333333333321            222334599999999987654432111   


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P  205 (299)
                                        .+..+|+....++.+.+.+.+.|++..+
T Consensus       497 ------------------ililDEpts~lD~~~~~~i~~~l~~~~~  524 (576)
T TIGR02204       497 ------------------ILLLDEATSALDAESEQLVQQALETLMK  524 (576)
T ss_pred             ------------------eEEEeCcccccCHHHHHHHHHHHHHHhC
Confidence                              2446677777788888888888887643

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.63  E-value=2.2e-08  Score=86.10  Aligned_cols=146  Identities=14%  Similarity=0.110  Sum_probs=84.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC-Cc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS-SP   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~-~~   90 (299)
                      ++|.+.+++.++|.|+||+|||||+++|++...+  +.+.+++.++...    ....+          .+.++.... ..
T Consensus        19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~----~~~~~----------~~~~~~~~~~~~   84 (195)
T PRK13541         19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNI----AKPYC----------TYIGHNLGLKLE   84 (195)
T ss_pred             EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChh----hhhhE----------EeccCCcCCCcc
Confidence            5778899999999999999999999999997653  5566666544211    00000          111111000 00


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+... .   .    ......+...+++.+++.. +.+....||+|+++++....++..-.              
T Consensus        85 ~tv~~~l~~~-~---~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p--------------  142 (195)
T PRK13541         85 MTVFENLKFW-S---E----IYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQS--------------  142 (195)
T ss_pred             CCHHHHHHHH-H---H----hcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCC--------------
Confidence            1111111100 0   0    0011234445556666644 44556789999999987665444311              


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHh
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRF  202 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~  202 (299)
                             ..+..+|+....++.+.+.+.+.++.
T Consensus       143 -------~~lllDEP~~~LD~~~~~~l~~~l~~  168 (195)
T PRK13541        143 -------DLWLLDEVETNLSKENRDLLNNLIVM  168 (195)
T ss_pred             -------CEEEEeCCcccCCHHHHHHHHHHHHH
Confidence                   12446667777778888888888864

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.62  E-value=1.7e-08  Score=89.61  Aligned_cols=155  Identities=14%  Similarity=0.117  Sum_probs=87.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhh-hhcCC-C
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRY-AMGKS-S   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~-~~~~~-~   89 (299)
                      ++|.+.+++.++|.|+||+|||||+++|++...+  +.+.+++.++...    . ...+      ....+.. +.... .
T Consensus        40 vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~----~-~~~~------~~i~~~~~~~~~~~~  108 (236)
T cd03267          40 ISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR----R-KKFL------RRIGVVFGQKTQLWW  108 (236)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc----c-hhhc------ccEEEEcCCccccCC
Confidence            5677889999999999999999999999997654  4555555432110    0 0000      0001111 10000 0


Q ss_pred             chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                      .....+.+... ..+..  .......+++..+++.+++.. +......||+|+++++....++..-.             
T Consensus       109 ~~tv~e~l~~~-~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p-------------  172 (236)
T cd03267         109 DLPVIDSFYLL-AAIYD--LPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEP-------------  172 (236)
T ss_pred             CCcHHHHHHHH-HHHcC--CCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCC-------------
Confidence            11111111100 00000  001122345556677777754 34556789999999988665444311             


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                              ..+..+|+....++.+.+.|.+.|.+.
T Consensus       173 --------~llllDEPt~~LD~~~~~~l~~~l~~~  199 (236)
T cd03267         173 --------EILFLDEPTIGLDVVAQENIRNFLKEY  199 (236)
T ss_pred             --------CEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence                    124466777788888888899988876

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=98.62  E-value=2.6e-08  Score=89.38  Aligned_cols=165  Identities=12%  Similarity=0.110  Sum_probs=93.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccc--c----ccHHHHHHHHHHHHHHHHhhhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWF--G----ESEANVRDIFDKVTMENFRYAM   85 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~--g----~~~~~i~~~f~~a~~~~~~~~~   85 (299)
                      ++|.+.+++.++|+|+||+|||||+++|++...  .+.+.+++.++.....  +    ......+. +.  +...+.++.
T Consensus        24 is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~--~~i~~v~q~  100 (257)
T PRK10619         24 VSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRL-LR--TRLTMVFQH  100 (257)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHH-Hh--hceEEEecC
Confidence            577889999999999999999999999999875  3556667655421000  0    00000011 11  001121211


Q ss_pred             cCCCc-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH--HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         86 GKSSP-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI--AKVTNGFSGADLTEICQRACKLAIRQSIETEI  162 (299)
Q Consensus        86 ~~~~~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L--A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~  162 (299)
                      ..... ....+.+.........  ...+...+++..+++.+++...  .+....||+|++++++...++..-.+      
T Consensus       101 ~~l~~~~sv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~------  172 (257)
T PRK10619        101 FNLWSHMTVLENVMEAPIQVLG--LSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPE------  172 (257)
T ss_pred             cccCCCCcHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCC------
Confidence            11111 1112222110000000  0112334566778888888543  46678999999999887654443111      


Q ss_pred             HHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        163 RREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                     .+..+|+....++.+.+.+.+.|++.+
T Consensus       173 ---------------llllDEPt~~LD~~~~~~l~~~l~~l~  199 (257)
T PRK10619        173 ---------------VLLFDEPTSALDPELVGEVLRIMQQLA  199 (257)
T ss_pred             ---------------EEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence                           244667777778888888888887764

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.62  E-value=2.6e-08  Score=83.81  Aligned_cols=130  Identities=17%  Similarity=0.194  Sum_probs=83.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+..+..+.++|.+|+|||||+|+|++...+  +.+.+++..+.-..+....+.+|.+|+.+..        ..++.
T Consensus        32 vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnt--------s~NPR  103 (267)
T COG4167          32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNT--------SLNPR  103 (267)
T ss_pred             eEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCcc--------ccChh
Confidence            6778889999999999999999999999997764  5677788777544444455667777764321        11111


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH--HHHHHhcCCCCHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL--NYIAKVTNGFSGADLTEICQRACKL  152 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l--~~LA~~t~glSggDl~~Lv~~A~~~  152 (299)
                      .....+.+.|-.+... ...+.+.+|+-..++.|++  +.-.-..+-++.++.|++|.+.++.
T Consensus       104 l~iGqiLd~PL~l~T~-~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALI  165 (267)
T COG4167         104 LRIGQILDFPLRLNTD-LEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALI  165 (267)
T ss_pred             hhhhhHhcchhhhccc-CChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHh
Confidence            1111111112111110 1135566677777778887  4444566889999999999776554

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=98.62  E-value=1.9e-08  Score=88.50  Aligned_cols=158  Identities=10%  Similarity=0.146  Sum_probs=83.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      +++.+.+++.++|.||||+|||||+++|++...+  +.+.+++.++...    .....+.      ...+.++.......
T Consensus        33 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----~~~~~~~------~i~~~~q~~~l~~~  102 (226)
T cd03248          33 VSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQY----EHKYLHS------KVSLVGQEPVLFAR  102 (226)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHc----CHHHHHh------hEEEEecccHHHhh
Confidence            4567899999999999999999999999998753  5566666554321    0000000      00111110000000


Q ss_pred             hhhHHHhhcCccchhhcCCCccH--HHHHhhhcccC--CHH-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGV--KRELQELVQDV--DLN-YIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRER  166 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~--~~R~~~l~~~v--~l~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~  166 (299)
                      ...+.+.........  ......  ..++..+++.+  ++. .+......||+|+.+++....++..-.           
T Consensus       103 tv~~nl~~~~~~~~~--~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p-----------  169 (226)
T cd03248         103 SLQDNIAYGLQSCSF--ECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNP-----------  169 (226)
T ss_pred             hHHHHhccccCCCCH--HHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC-----------
Confidence            111111100000000  000000  01122344444  453 345566889999999988665443311           


Q ss_pred             HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                ..+..+|+....++.+.+.|.+.|.+..
T Consensus       170 ----------~llllDEPt~~LD~~~~~~l~~~l~~~~  197 (226)
T cd03248         170 ----------QVLILDEATSALDAESEQQVQQALYDWP  197 (226)
T ss_pred             ----------CEEEEeCCcccCCHHHHHHHHHHHHHHc
Confidence                      1244667777777888888888887764

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=98.61  E-value=5.8e-08  Score=87.58  Aligned_cols=158  Identities=14%  Similarity=0.232  Sum_probs=85.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.|+||+|||||+++|++...       .+.+.+++.++.....  ....++.      ...+.++..
T Consensus        29 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~--~~~~~~~------~i~~v~q~~  100 (264)
T PRK14243         29 VWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV--DPVEVRR------RIGMVFQKP  100 (264)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc--ChHHHhh------hEEEEccCC
Confidence            567789999999999999999999999998653       3566777655421100  0001100      001111111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH----H-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL----N-YIAKVTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l----~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      ........+.+.. .....   .......+++..+++.+++    . .+......||+|+.|+++...++..-.+     
T Consensus       101 ~~~~~tv~enl~~-~~~~~---~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~-----  171 (264)
T PRK14243        101 NPFPKSIYDNIAY-GARIN---GYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPE-----  171 (264)
T ss_pred             ccccccHHHHHHh-hhhhc---CcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCC-----
Confidence            1111111122111 00000   0001222334444444443    2 2334557899999999987665543211     


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                      -+..+|+....++-+.+.|.+.|+++.
T Consensus       172 ----------------lllLDEPt~~LD~~~~~~l~~~L~~~~  198 (264)
T PRK14243        172 ----------------VILMDEPCSALDPISTLRIEELMHELK  198 (264)
T ss_pred             ----------------EEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence                            244566777777888888888887764

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.61  E-value=4.7e-08  Score=84.95  Aligned_cols=149  Identities=17%  Similarity=0.205  Sum_probs=87.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC-c
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-P   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-~   90 (299)
                      ++|.+.+++.++|.||||||||||+++|++...  .+.+.+++.++..     . . ++.      ...+..+..... .
T Consensus        21 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-----~-~-~~~------~~~~~~~~~~~~~~   87 (207)
T PRK13539         21 LSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD-----P-D-VAE------ACHYLGHRNAMKPA   87 (207)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc-----h-h-hHh------hcEEecCCCcCCCC
Confidence            567789999999999999999999999999765  3555566544210     0 0 110      001111111110 1


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+....    . ..  ....+++..+++.+++..+. .....||+|+++++....++..-.              
T Consensus        88 ~tv~~~l~~~~----~-~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p--------------  146 (207)
T PRK13539         88 LTVAENLEFWA----A-FL--GGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNR--------------  146 (207)
T ss_pred             CcHHHHHHHHH----H-hc--CCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCC--------------
Confidence            11112221100    0 00  11134566777788886544 444689999999988655443311              


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                             ..+..+|+....++.+.+.+.+.|++.
T Consensus       147 -------~llllDEPt~~LD~~~~~~l~~~l~~~  173 (207)
T PRK13539        147 -------PIWILDEPTAALDAAAVALFAELIRAH  173 (207)
T ss_pred             -------CEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence                   124466777777888888888888765

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=98.61  E-value=4.1e-08  Score=88.96  Aligned_cols=160  Identities=15%  Similarity=0.251  Sum_probs=87.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...       .+.+.+++.++....  .....++.      ...+.++..
T Consensus        44 vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~--~~~~~~~~------~i~~v~q~~  115 (272)
T PRK14236         44 ISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK--VDVAELRR------RVGMVFQRP  115 (272)
T ss_pred             EEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc--cCHHHHhc------cEEEEecCC
Confidence            567789999999999999999999999999754       466777766553210  00000000      001112111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      ..-.....+.+.. .... ..........+++..+++.+++     ..+......+|+|++|+++...++..-.+     
T Consensus       116 ~l~~~tv~enl~~-~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~-----  188 (272)
T PRK14236        116 NPFPKSIYENVVY-GLRL-QGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPE-----  188 (272)
T ss_pred             ccCcccHHHHHHH-HHHh-cCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCC-----
Confidence            1111111222210 0000 0000001122344445555444     23455668899999999987665543111     


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                      .+..+|+....++.+...|.+.|.+.+
T Consensus       189 ----------------lllLDEPt~gLD~~~~~~l~~~L~~~~  215 (272)
T PRK14236        189 ----------------VLLLDEPTSALDPISTLKIEELITELK  215 (272)
T ss_pred             ----------------EEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence                            244666777777888888888887763

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.61  E-value=3.1e-08  Score=88.70  Aligned_cols=160  Identities=13%  Similarity=0.231  Sum_probs=84.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...       .+.+.+++.++....  ..   ...+..   ...+.++..
T Consensus        25 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~--~~---~~~~~~---~i~~~~q~~   96 (253)
T PRK14261         25 ITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG--AD---VVALRR---KIGMVFQRP   96 (253)
T ss_pred             eEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccc--cc---hhhhhc---eEEEEecCC
Confidence            456789999999999999999999999998653       356667765543210  00   000000   001111111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      ..-.....+.+..... ... .........++..+++.+++     ..+......||+|+.+++....++..-.+     
T Consensus        97 ~~~~~tv~eni~~~~~-~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~-----  169 (253)
T PRK14261         97 NPFPKSIYENVAYGPR-IHG-EKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPE-----  169 (253)
T ss_pred             ccCcccHHHHHHhhHH-hcC-CCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCC-----
Confidence            1111111122110000 000 00001122344444554443     23455667899999999886655443211     


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                      -+..+|+....++.+.+.|.+.|.+.+
T Consensus       170 ----------------lllLDEP~~gLD~~~~~~l~~~l~~~~  196 (253)
T PRK14261        170 ----------------VILMDEPCSALDPIATAKIEDLIEDLK  196 (253)
T ss_pred             ----------------EEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence                            244566666677777777777777653

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.61  E-value=5.6e-08  Score=88.21  Aligned_cols=158  Identities=13%  Similarity=0.250  Sum_probs=85.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...       .+.+.+++.++.....  ....++.      ...+.++..
T Consensus        39 vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~--~~~~~~~------~i~~v~q~~  110 (274)
T PRK14265         39 VHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQI--NSVKLRR------QVGMVFQRP  110 (274)
T ss_pred             eeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccc--hhHHHhh------cEEEEccCC
Confidence            567789999999999999999999999998753       4566677655532100  0000000      001111111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH----H-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL----N-YIAKVTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l----~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      ........+.+..... ..   ...+...++....++.+++    . .+......||+|++++++...++..-.      
T Consensus       111 ~l~~~tv~~nl~~~~~-~~---~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p------  180 (274)
T PRK14265        111 NPFPKSIYENIAFAPR-AN---GYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKP------  180 (274)
T ss_pred             ccccccHHHHHHhHHH-hc---CchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCC------
Confidence            1111111111110000 00   0001112223333343333    2 234555789999999998765553211      


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                     ..+..+|+....++.+.+.|.+.|.+.+
T Consensus       181 ---------------~lllLDEPt~~LD~~~~~~l~~~L~~~~  208 (274)
T PRK14265        181 ---------------DVLLMDEPCSALDPISTRQVEELCLELK  208 (274)
T ss_pred             ---------------CEEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence                           1244667777888889999999998774

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.60  E-value=4.6e-08  Score=84.50  Aligned_cols=150  Identities=14%  Similarity=0.086  Sum_probs=86.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      +++.+.+++.++|.||||||||||+++|++...+  +.+.+++.++...    . .   . +.  +...+.++...... 
T Consensus        20 ~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~----~-~---~-~~--~~i~~~~q~~~~~~~   88 (200)
T PRK13540         20 ISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKD----L-C---T-YQ--KQLCFVGHRSGINPY   88 (200)
T ss_pred             eeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccC----H-H---H-HH--hheEEeccccccCcC
Confidence            4567889999999999999999999999997653  5566666554210    0 0   0 11  00011221111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+....   .     ......++..+++.+++..+ ......||+|+.++++...++..-.+             
T Consensus        89 ~tv~~~~~~~~---~-----~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~-------------  147 (200)
T PRK13540         89 LTLRENCLYDI---H-----FSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAK-------------  147 (200)
T ss_pred             CCHHHHHHHHH---h-----cCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCC-------------
Confidence            11122221100   0     01112355666676677444 34447899999999886654433111             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                              -+..+|+....++.+.+.|.++|++.
T Consensus       148 --------~lilDEP~~~LD~~~~~~l~~~l~~~  173 (200)
T PRK13540        148 --------LWLLDEPLVALDELSLLTIITKIQEH  173 (200)
T ss_pred             --------EEEEeCCCcccCHHHHHHHHHHHHHH
Confidence                    24456666777777888888888765

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=98.60  E-value=3e-08  Score=87.78  Aligned_cols=44  Identities=27%  Similarity=0.411  Sum_probs=36.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPEL   57 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l   57 (299)
                      ++|.+.+++.++|.|+||+|||||+++|++...+  +.+.+++.++
T Consensus        21 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~   66 (237)
T cd03252          21 ISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDL   66 (237)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeeh
Confidence            5677899999999999999999999999998753  5566666554

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.60  E-value=5.2e-08  Score=88.05  Aligned_cols=160  Identities=15%  Similarity=0.230  Sum_probs=86.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh-------cCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC-------QANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l-------~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+|+.++|.|+||+|||||+++|++..       ..+.+.+++.++.....  ....++.      ...+.++..
T Consensus        40 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~--~~~~~~~------~i~~v~q~~  111 (268)
T PRK14248         40 ISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI--NVVNLRR------EIGMVFQKP  111 (268)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc--cHHHHhc------cEEEEecCC
Confidence            46778999999999999999999999999964       24666777655432100  0000000      001111111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      ..-.....+.+..... ... ........+++...++.+++     ..+.+....||+|+.|+++...++..-.      
T Consensus       112 ~~~~~tv~enl~~~~~-~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p------  183 (268)
T PRK14248        112 NPFPKSIYNNITHALK-YAG-ERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKP------  183 (268)
T ss_pred             ccCcccHHHHHHHHHH-hcC-CCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCC------
Confidence            1111111111110000 000 00001112334444444443     2345666889999999998766554311      


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                     ..+..+|+....++.+.+.+.+.|++..
T Consensus       184 ---------------~lllLDEPt~~LD~~~~~~l~~~l~~~~  211 (268)
T PRK14248        184 ---------------AVLLLDEPASALDPISNAKIEELITELK  211 (268)
T ss_pred             ---------------CEEEEcCCCcccCHHHHHHHHHHHHHHh
Confidence                           1244667777777888888888887763

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=98.60  E-value=9.8e-08  Score=94.32  Aligned_cols=151  Identities=19%  Similarity=0.247  Sum_probs=86.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      .++.+++|+.++|+||+|||||||++.|++...+  +.+.+++.++...    ....++..+      .+.++....-..
T Consensus       341 i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~----~~~~lr~~i------~~v~Q~~~lf~~  410 (529)
T TIGR02857       341 VSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADA----DADSWRDQI------AWVPQHPFLFAG  410 (529)
T ss_pred             eeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhC----CHHHHHhhe------EEEcCCCcccCc
Confidence            4567899999999999999999999999997764  5677787766432    111122111      111211111112


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----------H-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----------N-YIAKVTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----------~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      +.++.+.-.         .....+++....++.+++           + .+......+|||+.|+++...++..-.    
T Consensus       411 ti~~Ni~~~---------~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~----  477 (529)
T TIGR02857       411 TIAENIRLA---------RPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA----  477 (529)
T ss_pred             CHHHHHhcc---------CCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC----
Confidence            222222110         000011222222222222           1 233445679999999988765443211    


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                       .-+..+|+....++-+.+.+.+++.+..
T Consensus       478 -----------------~ililDE~ts~lD~~~~~~i~~~l~~~~  505 (529)
T TIGR02857       478 -----------------PLLLLDEPTAHLDAETEALVTEALRALA  505 (529)
T ss_pred             -----------------CEEEEeCcccccCHHHHHHHHHHHHHhc
Confidence                             1244667778888889999999998864

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.59  E-value=6.1e-08  Score=86.55  Aligned_cols=158  Identities=15%  Similarity=0.228  Sum_probs=85.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.|+||+|||||+++|++...       .+.+.+++.++...     ......+.   ....+.++..
T Consensus        22 i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~-----~~~~~~~~---~~i~~~~q~~   93 (250)
T PRK14262         22 VTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDP-----QLDVTEYR---KKVGMVFQKP   93 (250)
T ss_pred             eeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccc-----hhhHHHhh---hhEEEEecCC
Confidence            567889999999999999999999999998654       35666776544321     00000000   0011222111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCHH-----HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDLN-----YIAKVTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l~-----~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      ........+.+...   ... ....+  ...+++..+++.+++.     .+......||+|++++++...++..-.+   
T Consensus        94 ~~~~~tv~e~l~~~---~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~---  166 (250)
T PRK14262         94 TPFPMSIYDNVAFG---PRI-HGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPE---  166 (250)
T ss_pred             ccCcccHHHHHHHH---HHH-cCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCC---
Confidence            11111111222110   000 00001  1223344445555441     2445667899999999887654443111   


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                        -+..+|+....++.+...|.+.|++..
T Consensus       167 ------------------llllDEP~~~LD~~~~~~l~~~l~~~~  193 (250)
T PRK14262        167 ------------------VILLDEPTSALDPIATQRIEKLLEELS  193 (250)
T ss_pred             ------------------EEEEeCCccccCHHHHHHHHHHHHHHh
Confidence                              244566667777778888888887653

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.59  E-value=7.8e-08  Score=85.85  Aligned_cols=160  Identities=12%  Similarity=0.245  Sum_probs=87.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...       .+.+.+++.++.....  .   ...+..   ...+.++..
T Consensus        22 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~--~---~~~~~~---~i~~~~q~~   93 (250)
T PRK14266         22 VNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV--D---VVELRK---KVGMVFQKP   93 (250)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccc--c---HHHHhh---heEEEecCC
Confidence            467788999999999999999999999998643       3567777665432100  0   001100   011222111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH----H-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL----N-YIAKVTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l----~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      ..-.....+.+..... ... ........+++..+++.+++    . .+......+|+|++++++...++..-.+     
T Consensus        94 ~~~~~t~~~nl~~~~~-~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~-----  166 (250)
T PRK14266         94 NPFPKSIFDNVAYGLR-IHG-EDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPE-----  166 (250)
T ss_pred             ccCcchHHHHHHhHHh-hcC-CCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCC-----
Confidence            1111111122211000 000 00001223455555665554    2 2334457899999999987665543221     


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                      .+..+|+....++.+...+.+.|.+.+
T Consensus       167 ----------------llllDEP~~gLD~~~~~~l~~~l~~~~  193 (250)
T PRK14266        167 ----------------VILMDEPCSALDPISTTKIEDLIHKLK  193 (250)
T ss_pred             ----------------EEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence                            244566666777778888888887764

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=6.8e-08  Score=88.28  Aligned_cols=161  Identities=9%  Similarity=0.094  Sum_probs=87.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~   89 (299)
                      ++|.+.+++.++|.||||||||||+++|++.+.+  +.+.+++.++.... . .......+..   ...+.++...  ..
T Consensus        30 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~-~-~~~~~~~~~~---~i~~v~q~~~~~~~  104 (289)
T PRK13645         30 TSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANL-K-KIKEVKRLRK---EIGLVFQFPEYQLF  104 (289)
T ss_pred             eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccc-c-ccccHHHHhc---cEEEEEeCcchhhh
Confidence            5677899999999999999999999999997754  55666665442100 0 0000000000   0011111100  00


Q ss_pred             chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-HH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-NY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                      .....+.+. +......  .......+++..+++.+++ .. +......||+|++|++....++..-.+           
T Consensus       105 ~~tv~enl~-~~~~~~~--~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~-----------  170 (289)
T PRK13645        105 QETIEKDIA-FGPVNLG--ENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGN-----------  170 (289)
T ss_pred             hhHHHHHHH-HHHHHcC--CCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCC-----------
Confidence            011111111 0000000  0011223455566777777 33 445568899999999987665543221           


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                .+..+|+....++.+.+.|.+.|.+.
T Consensus       171 ----------lLlLDEPt~~LD~~~~~~l~~~l~~~  196 (289)
T PRK13645        171 ----------TLVLDEPTGGLDPKGEEDFINLFERL  196 (289)
T ss_pred             ----------EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence                      24466677777778888888877765

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.59  E-value=6e-08  Score=87.42  Aligned_cols=158  Identities=12%  Similarity=0.147  Sum_probs=88.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.|+||+|||||+++|++.+.       .+.+.+++.++.....  ....++.      ...+.++..
T Consensus        27 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~--~~~~~~~------~i~~v~q~~   98 (261)
T PRK14263         27 SHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGV--DPVVVRR------YIGMVFQQP   98 (261)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccccc--chHhhhh------ceEEEecCC
Confidence            567889999999999999999999999999864       4566777665532100  0001110      001111111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-----HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-----YIAKVTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-----~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      ..-.....+.+.. .....   ...++...++..+++.+++.     .+......||+|+.|+++...++..-.      
T Consensus        99 ~~~~~tv~enl~~-~~~~~---~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p------  168 (261)
T PRK14263         99 NPFSMSIFDNVAF-GLRLN---RYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEP------  168 (261)
T ss_pred             ccccccHHHHHHH-HHhhc---CchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCC------
Confidence            1101111111110 00000   00122234555666666552     223445679999999998766554311      


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                     ..+..+++....++.+.+.|.+.|++.+
T Consensus       169 ---------------~llllDEPtsgLD~~~~~~l~~~l~~~~  196 (261)
T PRK14263        169 ---------------EVLLLDEPCSALDPIATRRVEELMVELK  196 (261)
T ss_pred             ---------------CEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence                           1244667777778888889988888774

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.59  E-value=4.9e-08  Score=90.89  Aligned_cols=157  Identities=15%  Similarity=0.274  Sum_probs=87.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+|+.++|+|++|||||||+++|++...       .+.+.+++.++......  ...++.      ...+.++..
T Consensus       101 is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~--~~~lr~------~i~~v~q~~  172 (329)
T PRK14257        101 LNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS--SLELRT------RIGMVFQKP  172 (329)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc--hHhhhc------cEEEEecCC
Confidence            567789999999999999999999999999764       56777887765321000  000110      011122111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCccH---HHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLEGV---KRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSI  158 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~---~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~  158 (299)
                      ..-....++.+..-+.     .....+.   .+++..+++.+.+     ..+......||||++|+++...++..-.+  
T Consensus       173 ~~~~~ti~eNi~~~~~-----~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~--  245 (329)
T PRK14257        173 TPFEMSIFDNVAYGPR-----NNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPE--  245 (329)
T ss_pred             ccCCCcHHHHHHhHHH-----hcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCC--
Confidence            1111112222210000     0001111   1122333333332     34566778899999999997665543221  


Q ss_pred             HHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        159 ETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                         -+..+++...+++.+...|.+.|.+..
T Consensus       246 -------------------IlLLDEPts~LD~~~~~~i~~~i~~l~  272 (329)
T PRK14257        246 -------------------VLLMDEPTSALDPIATAKIEELILELK  272 (329)
T ss_pred             -------------------EEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence                               244667777777888888888888765

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.59  E-value=6e-08  Score=87.75  Aligned_cols=157  Identities=13%  Similarity=0.242  Sum_probs=86.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.||||||||||+++|++...       .+.+.+++.++.....  ....++   .   ...+.++..
T Consensus        32 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~--~~~~~~---~---~i~~v~q~~  103 (269)
T PRK14259         32 VFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV--DPVEVR---R---RIGMVFQQP  103 (269)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC--CHHHHh---h---ceEEEccCC
Confidence            467789999999999999999999999999753       3556666655421000  000111   0   001111111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCC-ccHHHHHhhhcccCCH----H-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGL-EGVKRELQELVQDVDL----N-YIAKVTNGFSGADLTEICQRACKLAIRQSIET  160 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~-p~~~~R~~~l~~~v~l----~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~  160 (299)
                      ........+.+.. ....    ... ....+++..+++.+++    . .+......||+|++|+++...++..-.     
T Consensus       104 ~l~~~tv~enl~~-~~~~----~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p-----  173 (269)
T PRK14259        104 NPFPKSIYENIAF-GARI----NGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEP-----  173 (269)
T ss_pred             ccchhhHHHHHhh-hhhh----cCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCC-----
Confidence            1111111222211 0000    001 1123344444444443    2 234556789999999988765444311     


Q ss_pred             HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                      ..+..+|+....++.+.+.|.+.|++.+
T Consensus       174 ----------------~lllLDEPt~gLD~~~~~~l~~~l~~~~  201 (269)
T PRK14259        174 ----------------EVILMDEPCSALDPISTLKIEETMHELK  201 (269)
T ss_pred             ----------------CEEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence                            1245667777778888899999988774

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.59  E-value=5.1e-08  Score=85.57  Aligned_cols=149  Identities=17%  Similarity=0.133  Sum_probs=87.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.||||+|||||+++|++.+.+  +.+.+++.++...    .   .       +...+.++...... 
T Consensus        19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~----~---~-------~~~~~~~q~~~~~~~   84 (223)
T TIGR03740        19 ISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK----D---L-------HKIGSLIESPPLYEN   84 (223)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc----c---c-------ccEEEEcCCCCcccc
Confidence            4677889999999999999999999999997653  4455655433210    0   0       00011111111110 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+... .    .....  ...++..+++.+++.. +......||+|+.+++....++..-.+             
T Consensus        85 ~t~~~~~~~~-~----~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~-------------  144 (223)
T TIGR03740        85 LTARENLKVH-T----TLLGL--PDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPK-------------  144 (223)
T ss_pred             CCHHHHHHHH-H----HHcCC--CHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence            1111111100 0    00011  1345556677777754 445568899999999877654443111             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                              .+..+++....++-+.+.|.+.|.+.+
T Consensus       145 --------llllDEP~~~LD~~~~~~l~~~L~~~~  171 (223)
T TIGR03740       145 --------LLILDEPTNGLDPIGIQELRELIRSFP  171 (223)
T ss_pred             --------EEEECCCccCCCHHHHHHHHHHHHHHH
Confidence                    244667777777888888888887763

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.58  E-value=4.6e-08  Score=96.73  Aligned_cols=162  Identities=12%  Similarity=0.148  Sum_probs=92.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CC-C
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KS-S   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~-~   89 (299)
                      ++|.+.+++.++|+||||||||||+|+|++.+. .+.+.+++.++...    ....+.. +.  ....+.++..  .. .
T Consensus       305 isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~----~~~~~~~-~~--~~i~~v~q~~~~~l~~  377 (529)
T PRK15134        305 ISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNL----NRRQLLP-VR--HRIQVVFQDPNSSLNP  377 (529)
T ss_pred             ceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEcccc----chhhHHH-hh--hceEEEEeCchhhcCC
Confidence            577889999999999999999999999999763 45566666554321    1111111 00  0001111111  00 0


Q ss_pred             chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-H-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-Y-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                      .....+.+.. ............+..+++..+++.+++. . +.+....||||++|+++...++..-.            
T Consensus       378 ~~tv~e~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p------------  444 (529)
T PRK15134        378 RLNVLQIIEE-GLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKP------------  444 (529)
T ss_pred             cccHHHHHHH-HHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCC------------
Confidence            1111122211 0000000000122345667778888884 3 45566899999999998776554311            


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                               ..+..+|+....++.+.+.+.+.|++++
T Consensus       445 ---------~llllDEPt~~LD~~~~~~l~~~l~~~~  472 (529)
T PRK15134        445 ---------SLIILDEPTSSLDKTVQAQILALLKSLQ  472 (529)
T ss_pred             ---------CEEEeeCCccccCHHHHHHHHHHHHHHH
Confidence                     1245667777888888888988888763

>PLN03211 ABC transporter G-25; Provisional

Probab=98.58  E-value=3.9e-08  Score=99.52  Aligned_cols=154  Identities=15%  Similarity=0.138  Sum_probs=88.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC----CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA----NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~----~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~   89 (299)
                      +++.+.+|+.++|.||||+|||||+++|++....    +.+.+++.++...           .++   ...+..+.....
T Consensus        87 vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~-----------~~~---~i~yv~Q~~~l~  152 (659)
T PLN03211         87 VTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQ-----------ILK---RTGFVTQDDILY  152 (659)
T ss_pred             CEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchh-----------hcc---ceEEECcccccC
Confidence            4566899999999999999999999999997643    5566666543210           000   001111111111


Q ss_pred             c-hhhhHHHhhcCccch-hhcCCCccHHHHHhhhcccCCHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 P-SALRETIVEVPNITW-EDIGGLEGVKRELQELVQDVDLNYIAK------VTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        90 ~-~~~~~~l~~l~~~l~-~~~~r~p~~~~R~~~l~~~v~l~~LA~------~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      . ...++.+.- ...+. +......+..++++.+++.+++...+.      ...++|||++|++....++..-.+     
T Consensus       153 ~~lTV~E~l~~-~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~-----  226 (659)
T PLN03211        153 PHLTVRETLVF-CSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS-----  226 (659)
T ss_pred             CcCCHHHHHHH-HHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCC-----
Confidence            1 122222211 00000 000001123456677888888866542      346899999999987765544221     


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                      -+..+|+....+..+..++.+.|++.
T Consensus       227 ----------------iLlLDEPtsgLD~~~~~~l~~~L~~l  252 (659)
T PLN03211        227 ----------------LLILDEPTSGLDATAAYRLVLTLGSL  252 (659)
T ss_pred             ----------------EEEEeCCCCCcCHHHHHHHHHHHHHH
Confidence                            23455666666777777777777765

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.58  E-value=4.3e-08  Score=86.86  Aligned_cols=156  Identities=10%  Similarity=0.126  Sum_probs=85.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...  .+.+.+++.++.....   ....+.      ...+.++....-. 
T Consensus        24 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~---~~~~~~------~i~~~~q~~~~~~~   94 (237)
T PRK11614         24 VSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQT---AKIMRE------AVAIVPEGRRVFSR   94 (237)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCH---HHHHHh------CEEEeccCcccCCC
Confidence            567789999999999999999999999999765  4556666655422100   000000      0011111111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccC-CHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDV-DLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v-~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                      ....+.+.. ...    ........+++..+++.+ .+.. .......||+|+.+++....++..-.+            
T Consensus        95 ~tv~~~l~~-~~~----~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~------------  157 (237)
T PRK11614         95 MTVEENLAM-GGF----FAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPR------------  157 (237)
T ss_pred             CcHHHHHHH-hhh----ccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCC------------
Confidence            111121111 000    000111223344444544 3533 345557899999999887655443221            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                               -+..+|+....++.+.+.|.+.|++.+
T Consensus       158 ---------illlDEPt~~LD~~~~~~l~~~l~~~~  184 (237)
T PRK11614        158 ---------LLLLDEPSLGLAPIIIQQIFDTIEQLR  184 (237)
T ss_pred             ---------EEEEcCccccCCHHHHHHHHHHHHHHH
Confidence                     244566667777778888888887763

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.58  E-value=6.2e-08  Score=86.61  Aligned_cols=157  Identities=13%  Similarity=0.251  Sum_probs=86.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC-------CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA-------NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~-------~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...+       +.+.+++.++...  .......+.      ...+.++..
T Consensus        23 ~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~~~------~i~~v~q~~   94 (251)
T PRK14249         23 INMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSP--NLDVVNLRK------RVGMVFQQP   94 (251)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccc--ccChHHhhc------eEEEEecCC
Confidence            5667889999999999999999999999998754       5666776554321  000000100      001222111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCC--c-cHHHHHhhhcccCCH----H-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGL--E-GVKRELQELVQDVDL----N-YIAKVTNGFSGADLTEICQRACKLAIRQSI  158 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~--p-~~~~R~~~l~~~v~l----~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~  158 (299)
                      ..-.....+.+.. .    ......  . ...+++..+++.+++    . .+......+|+|++|+++...++..-.+  
T Consensus        95 ~~~~~tv~enl~~-~----~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~--  167 (251)
T PRK14249         95 NPFPKSIFDNVAF-G----PRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPE--  167 (251)
T ss_pred             ccCcCcHHHHHhh-H----HHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCC--
Confidence            1111111122210 0    000000  1 122334444444443    2 2445667899999999887765543111  


Q ss_pred             HHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        159 ETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                         -+..+|+....++.+.+.|.+.|++.+
T Consensus       168 -------------------lllLDEPt~~LD~~~~~~l~~~l~~~~  194 (251)
T PRK14249        168 -------------------VILMDEPCSALDPVSTMRIEELMQELK  194 (251)
T ss_pred             -------------------EEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence                               244666777777788888888887763

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=98.57  E-value=9.6e-08  Score=96.84  Aligned_cols=150  Identities=17%  Similarity=0.192  Sum_probs=87.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      .++.+++++.++|+|+||||||||+|.|.+...+  +.+.+|+.++...    ....+|.-..      ...+....-..
T Consensus       492 isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i----~~~~lR~~ig------~V~Q~~~Lf~g  561 (709)
T COG2274         492 LSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDI----DLASLRRQVG------YVLQDPFLFSG  561 (709)
T ss_pred             eeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhc----CHHHHHhhee------EEcccchhhcC
Confidence            4567899999999999999999999999997764  6788898887543    1122221100      00000000111


Q ss_pred             hhhHHHhhcCccchhhcCCCccH-HHHHhhhcccC-----------CH-HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGV-KRELQELVQDV-----------DL-NYIAKVTNGFSGADLTEICQRACKLAIRQSI  158 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~-~~R~~~l~~~v-----------~l-~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~  158 (299)
                      +.++.+..          ..|+. .+++...+...           ++ ..+...-.++||||.|++..+.+...-.   
T Consensus       562 SI~eNi~l----------~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P---  628 (709)
T COG2274         562 SIRENIAL----------GNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKP---  628 (709)
T ss_pred             cHHHHHhc----------CCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCC---
Confidence            11111111          01111 12222222211           23 2345666789999999987654332211   


Q ss_pred             HHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        159 ETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                        .-+..+|+.+..++.|..-+.+.|.+..
T Consensus       629 ------------------~ILlLDEaTSaLD~~sE~~I~~~L~~~~  656 (709)
T COG2274         629 ------------------KILLLDEATSALDPETEAIILQNLLQIL  656 (709)
T ss_pred             ------------------CEEEEeCcccccCHhHHHHHHHHHHHHh
Confidence                              1244677888888899999999888876

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.57  E-value=2.6e-08  Score=97.93  Aligned_cols=159  Identities=14%  Similarity=0.088  Sum_probs=85.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc----CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ----ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~----~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~   89 (299)
                      ++|.+.+++.++|+||||||||||+|+|++.+.    .+.+.+++.++...    ...   ....  ....+.++.....
T Consensus        24 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~----~~~---~~~~--~~i~~v~q~~~~~   94 (506)
T PRK13549         24 VSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQAS----NIR---DTER--AGIAIIHQELALV   94 (506)
T ss_pred             eeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCC----CHH---HHHH--CCeEEEEeccccC
Confidence            567789999999999999999999999999775    45666776655321    100   0000  0001111111110


Q ss_pred             c-hhhhHHHhhcCccchh-hcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 P-SALRETIVEVPNITWE-DIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRER  166 (299)
Q Consensus        90 ~-~~~~~~l~~l~~~l~~-~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~  166 (299)
                      . ....+.+. +...... .........+++..+++.+++.. +.+....||||++|++....++..-.+          
T Consensus        95 ~~~tv~e~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~----------  163 (506)
T PRK13549         95 KELSVLENIF-LGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQAR----------  163 (506)
T ss_pred             CCCcHHHHhh-hcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCC----------
Confidence            0 11112211 1100000 00001123456667778888754 345568899999999988766543221          


Q ss_pred             HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                 .+..+|+....++.+...+.+.|.+.
T Consensus       164 -----------lllLDEPt~~LD~~~~~~l~~~l~~l  189 (506)
T PRK13549        164 -----------LLILDEPTASLTESETAVLLDIIRDL  189 (506)
T ss_pred             -----------EEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence                       13344555555555566666555554

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=98.57  E-value=6.7e-08  Score=84.82  Aligned_cols=158  Identities=15%  Similarity=0.197  Sum_probs=87.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHH--HHhhhhcCCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTME--NFRYAMGKSS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--~~~~~~~~~~   89 (299)
                      +++.+.+++.+.|+||||+|||||++.++++..+  +.+.+.+..+     |..+-. .++.+.....  .+......  
T Consensus        50 isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~-----G~~~~~-~elrk~IG~vS~~L~~~~~~--  121 (257)
T COG1119          50 LSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRF-----GKGETI-FELRKRIGLVSSELHERFRV--  121 (257)
T ss_pred             cceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeec-----cCCcch-HHHHHHhCccCHHHHhhccc--
Confidence            4567899999999999999999999999998765  3343433322     211111 1111111000  00000000  


Q ss_pred             chhhhHHHhhcCccchhhcCC-----CccHHHHHhhhcccCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGG-----LEGVKRELQELVQDVDLNYIAKVT-NGFSGADLTEICQRACKLAIRQSIETEIR  163 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r-----~p~~~~R~~~l~~~v~l~~LA~~t-~glSggDl~~Lv~~A~~~a~~r~~~~~~~  163 (299)
                      ....++.   +.......+..     -.....++..+++.+++..++.++ ..+|-||++++....++..-.+.      
T Consensus       122 ~~~v~dv---VlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~L------  192 (257)
T COG1119         122 RETVRDV---VLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPEL------  192 (257)
T ss_pred             cccccee---eeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCE------
Confidence            0000000   00000111111     123445666889999999899877 77999999998876655543322      


Q ss_pred             HHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        164 REREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                     +..+|+....+.+.++.|.+-|.+.
T Consensus       193 ---------------LiLDEP~~GLDl~~re~ll~~l~~~  217 (257)
T COG1119         193 ---------------LILDEPAQGLDLIAREQLLNRLEEL  217 (257)
T ss_pred             ---------------EEecCccccCChHHHHHHHHHHHHH
Confidence                           3355555555666666666666554

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.57  E-value=5.5e-08  Score=82.11  Aligned_cols=44  Identities=25%  Similarity=0.591  Sum_probs=35.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPEL   57 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l   57 (299)
                      +++.+.+++.++|.||+|+|||||+++|++...+  +.+.+++.++
T Consensus        21 ~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~   66 (173)
T cd03246          21 VSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADI   66 (173)
T ss_pred             eEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEc
Confidence            4567889999999999999999999999997654  4566665544

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.57  E-value=6.1e-08  Score=82.46  Aligned_cols=150  Identities=19%  Similarity=0.214  Sum_probs=86.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      +++.+.+++.+.+.||||||||||++.+|+...+  +.+.+++..+...  |. ++  .-+|+...   +.+       -
T Consensus        24 vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gP--ga-er--gvVFQ~~~---LlP-------W   88 (259)
T COG4525          24 VSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGP--GA-ER--GVVFQNEA---LLP-------W   88 (259)
T ss_pred             cceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCC--Cc-cc--eeEeccCc---cch-------h
Confidence            5678899999999999999999999999997764  5566666555432  10 11  11222110   000       0


Q ss_pred             hhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                        ...+..+...+  .+...+  .+.+++...+..|++.... ++.-.+|||+.|++-.+.++.+-.+.           
T Consensus        89 --l~~~dNvafgL--~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~-----------  153 (259)
T COG4525          89 --LNVIDNVAFGL--QLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQL-----------  153 (259)
T ss_pred             --hHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcce-----------
Confidence              00000000000  011122  2334455777788886655 45578999999999877666543322           


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                +..+++-...+.+|.+.+.+-|-+.
T Consensus       154 ----------LlLDEPfgAlDa~tRe~mQelLldl  178 (259)
T COG4525         154 ----------LLLDEPFGALDALTREQMQELLLDL  178 (259)
T ss_pred             ----------EeecCchhhHHHHHHHHHHHHHHHH
Confidence                      2244444556677777777766544

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=98.57  E-value=1.1e-07  Score=84.21  Aligned_cols=44  Identities=23%  Similarity=0.516  Sum_probs=37.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPEL   57 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l   57 (299)
                      ++|.+.+++.++|.|+||||||||+++|++.+.  .+.+.+++.++
T Consensus        22 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~   67 (238)
T cd03249          22 LSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDI   67 (238)
T ss_pred             eEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEeh
Confidence            567889999999999999999999999999865  45566666554

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=98.57  E-value=1.4e-07  Score=102.93  Aligned_cols=34  Identities=18%  Similarity=0.324  Sum_probs=30.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      ++|.+++++.++|+||+||||||+++.|.+...+
T Consensus      1187 lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265       1187 LTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence            5677899999999999999999999999997664

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=98.57  E-value=3e-08  Score=98.82  Aligned_cols=47  Identities=26%  Similarity=0.511  Sum_probs=40.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTM   60 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~   60 (299)
                      ++|.+++++.++|+||+||||||+++.|++...+  +.+.+|+.++...
T Consensus       348 is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i  396 (567)
T COG1132         348 ISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDI  396 (567)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhc
Confidence            5677899999999999999999999999997765  6677888887654

>CHL00176 ftsH cell division protein; Validated

Probab=98.57  E-value=1.4e-08  Score=101.96  Aligned_cols=56  Identities=18%  Similarity=0.194  Sum_probs=49.1

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773        204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .+.++|+||+|++++|+++.+.+.+   +++|+.|.. |.+...|+|||||||||||+|.
T Consensus       177 ~~~~~f~dv~G~~~~k~~l~eiv~~---lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LA  233 (638)
T CHL00176        177 DTGITFRDIAGIEEAKEEFEEVVSF---LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLA  233 (638)
T ss_pred             CCCCCHHhccChHHHHHHHHHHHHH---HhCHHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence            4569999999999999999999988   999998754 5566779999999999999884

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=98.56  E-value=9e-08  Score=84.17  Aligned_cols=153  Identities=12%  Similarity=0.046  Sum_probs=86.2

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC---Cc
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS---SP   90 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~---~~   90 (299)
                      |.+.+++.++|.|+||||||||+++|++...  .+.+.+++.++..         .    .  +...+.++....   ..
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~---------~----~--~~i~~v~q~~~~~~~~~   65 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGK---------G----W--RHIGYVPQRHEFAWDFP   65 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchH---------h----h--CcEEEecccccccCCCC
Confidence            4578999999999999999999999999765  3556666544310         0    0  000111111110   00


Q ss_pred             hhhhHHHhhcCccchhhcCCCc-cHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVPNITWEDIGGLE-GVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p-~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                      ....+.+..........+.... ...+++..+++.+++.. +......||+|++|+++...++..-.+            
T Consensus        66 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~------------  133 (223)
T TIGR03771        66 ISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPS------------  133 (223)
T ss_pred             ccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC------------
Confidence            1111221110000000000111 22345667777777754 445567899999999887665443211            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                               -+..+|+....++.+.+.|.+.|++.+
T Consensus       134 ---------llilDEP~~~LD~~~~~~l~~~l~~~~  160 (223)
T TIGR03771       134 ---------VLLLDEPFTGLDMPTQELLTELFIELA  160 (223)
T ss_pred             ---------EEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence                     244666777777888888888887653

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=98.56  E-value=5.3e-08  Score=97.50  Aligned_cols=151  Identities=15%  Similarity=0.238  Sum_probs=86.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      +++.+++++.++|+|++|||||||++.|++...+  +.+.+++.++...    ....++..+      .+.++....-..
T Consensus       354 inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~----~~~~~r~~i------~~v~Q~~~lf~~  423 (588)
T PRK13657        354 VSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTV----TRASLRRNI------AVVFQDAGLFNR  423 (588)
T ss_pred             eeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhC----CHHHHHhhe------EEEecCcccccc
Confidence            4567789999999999999999999999997764  5677888766542    111122111      111111111112


Q ss_pred             hhhHHHhhcCccchhhcCCCcc-HHHHHhhhcccCC-----------HHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEG-VKRELQELVQDVD-----------LNY-IAKVTNGFSGADLTEICQRACKLAIRQSI  158 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~-~~~R~~~l~~~v~-----------l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~  158 (299)
                      +.++.+.-.         + |+ .++++...++.++           ++. +......+||||+|+++...++..-.+  
T Consensus       424 Ti~~Ni~~~---------~-~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~--  491 (588)
T PRK13657        424 SIEDNIRVG---------R-PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPP--  491 (588)
T ss_pred             cHHHHHhcC---------C-CCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC--
Confidence            222222110         0 10 0122222222222           222 233345699999999987655443211  


Q ss_pred             HHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773        159 ETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P  205 (299)
                                         -+..+|+....++.+.+.+.++|.+..+
T Consensus       492 -------------------iliLDEpts~LD~~t~~~i~~~l~~~~~  519 (588)
T PRK13657        492 -------------------ILILDEATSALDVETEAKVKAALDELMK  519 (588)
T ss_pred             -------------------EEEEeCCccCCCHHHHHHHHHHHHHHhc
Confidence                               2446777788888888999988887643

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.56  E-value=2.8e-08  Score=90.21  Aligned_cols=159  Identities=11%  Similarity=0.148  Sum_probs=89.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KSS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~~   89 (299)
                      ++|.+.+++.++|+||||+|||||+++|++.+.  .+.+.+++.++...     ......+..   ...+.++..  ...
T Consensus        21 vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~-----~~~~~~~~~---~i~~v~q~~~~~~~   92 (275)
T PRK13639         21 INFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYD-----KKSLLEVRK---TVGIVFQNPDDQLF   92 (275)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccc-----cchHHHHHh---heEEEeeChhhhhc
Confidence            567789999999999999999999999999765  35666776654210     000001000   001111110  000


Q ss_pred             chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                      .....+.+. +.. .... .......+++..+++.+++..+. .....||+|++|++....++..-.+            
T Consensus        93 ~~tv~e~i~-~~~-~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~------------  157 (275)
T PRK13639         93 APTVEEDVA-FGP-LNLG-LSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPE------------  157 (275)
T ss_pred             cccHHHHHH-HHH-HHcC-CCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC------------
Confidence            011112221 000 0000 01112335566777888885544 5557899999999886654433111            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                               -+..+|+....++.+...+.+.|.++.
T Consensus       158 ---------llllDEPt~gLD~~~~~~l~~~l~~l~  184 (275)
T PRK13639        158 ---------IIVLDEPTSGLDPMGASQIMKLLYDLN  184 (275)
T ss_pred             ---------EEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence                     234566666777778888888877763

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=98.56  E-value=3e-08  Score=87.59  Aligned_cols=44  Identities=23%  Similarity=0.450  Sum_probs=36.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPEL   57 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l   57 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...+  +.+.+++.++
T Consensus        21 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~   66 (234)
T cd03251          21 ISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDV   66 (234)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEh
Confidence            5677889999999999999999999999998754  5566666544

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.56  E-value=1.8e-08  Score=98.93  Aligned_cols=159  Identities=13%  Similarity=0.129  Sum_probs=87.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC-c
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-P   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-~   90 (299)
                      ++|.+.+++.++|+||||||||||+|+|++.+.+  +.+.+++.++...    .....   ..  ....+.++..... .
T Consensus        23 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~----~~~~~---~~--~~i~~v~q~~~~~~~   93 (501)
T PRK10762         23 AALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFN----GPKSS---QE--AGIGIIHQELNLIPQ   93 (501)
T ss_pred             eeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC----CHHHH---Hh--CCEEEEEcchhccCC
Confidence            4677899999999999999999999999998754  5666776554221    00000   00  0001111111100 0


Q ss_pred             hhhhHHHhhcCccchhhcCCC--ccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVPNITWEDIGGL--EGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~--p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                      ....+.+. +...........  .+..+++..+++.+++... .+....||||++|++....++..-.+           
T Consensus        94 ~tv~e~l~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~-----------  161 (501)
T PRK10762         94 LTIAENIF-LGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESK-----------  161 (501)
T ss_pred             CcHHHHhh-hccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCC-----------
Confidence            11112211 110000000001  1234566677888888543 45567899999999988766543221           


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                .+..+|+....++.+.+.|.+.|++.
T Consensus       162 ----------lllLDEPt~~LD~~~~~~l~~~l~~l  187 (501)
T PRK10762        162 ----------VIIMDEPTDALTDTETESLFRVIREL  187 (501)
T ss_pred             ----------EEEEeCCcCCCCHHHHHHHHHHHHHH
Confidence                      23355555666666666666666554

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=98.56  E-value=3.4e-08  Score=87.99  Aligned_cols=44  Identities=27%  Similarity=0.517  Sum_probs=36.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh----cCCeecccchhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPEL   57 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l----~~~~i~i~~~~l   57 (299)
                      ++|.+.+++.++|.|+||||||||+++|++..    ..+.+.+++.++
T Consensus        20 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~   67 (248)
T PRK09580         20 LNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL   67 (248)
T ss_pred             ceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCcc
Confidence            56778899999999999999999999999973    245667776554

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=98.56  E-value=5.5e-08  Score=86.89  Aligned_cols=161  Identities=16%  Similarity=0.138  Sum_probs=86.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh----cCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l----~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~   89 (299)
                      ++|.+.+++.++|.|+||||||||+++|++..    ..+.+.+++.++.....    ...+.     ....+.++.....
T Consensus        26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~----~~~~~-----~~~~~~~q~~~~~   96 (252)
T CHL00131         26 LNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP----EERAH-----LGIFLAFQYPIEI   96 (252)
T ss_pred             ceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCCh----hhhhe-----eeEEEEecccccc
Confidence            46788999999999999999999999999962    24566777655432110    00000     0000111110000


Q ss_pred             c-hhhhHHHhhcCc--cchhhcC--CCccHHHHHhhhcccCCHH-HH-HHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 P-SALRETIVEVPN--ITWEDIG--GLEGVKRELQELVQDVDLN-YI-AKVTN-GFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        90 ~-~~~~~~l~~l~~--~l~~~~~--r~p~~~~R~~~l~~~v~l~-~L-A~~t~-glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      . ....+.+.....  .......  ......+++..+++.+++. .+ .+... .||+|++++++...++..-.+     
T Consensus        97 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~-----  171 (252)
T CHL00131         97 PGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSE-----  171 (252)
T ss_pred             ccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCC-----
Confidence            0 011111110000  0000000  0011234556677777774 33 34444 599999999987665543221     


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                      -+..+|+....++.+.+.|.+.|.+..
T Consensus       172 ----------------llllDEPt~~LD~~~~~~l~~~l~~~~  198 (252)
T CHL00131        172 ----------------LAILDETDSGLDIDALKIIAEGINKLM  198 (252)
T ss_pred             ----------------EEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence                            244667777777888888888887653

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=98.56  E-value=2e-08  Score=88.70  Aligned_cols=57  Identities=14%  Similarity=0.090  Sum_probs=49.5

Q ss_pred             HhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        201 RFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       201 ~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      ....++++.+||=|.++.|+.-+=..++   |+.||.|..=-.|  +||||||||||||++-
T Consensus       112 ~e~~~~it~ddViGqEeAK~kcrli~~y---LenPe~Fg~WAPk--nVLFyGppGTGKTm~A  168 (368)
T COG1223         112 REIISDITLDDVIGQEEAKRKCRLIMEY---LENPERFGDWAPK--NVLFYGPPGTGKTMMA  168 (368)
T ss_pred             hhhhccccHhhhhchHHHHHHHHHHHHH---hhChHHhcccCcc--eeEEECCCCccHHHHH
Confidence            3567889999999999999988777787   9999999876655  7999999999999763

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.55  E-value=7.3e-08  Score=86.15  Aligned_cols=159  Identities=11%  Similarity=0.212  Sum_probs=84.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|+|+||+|||||+++|++...       .+.+.+++.++.....  .....+.      ...+.++..
T Consensus        24 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~--~~~~~~~------~i~~~~q~~   95 (252)
T PRK14255         24 IDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNE--DVVQLRK------QVGMVFQQP   95 (252)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccc--cHHHhcC------eEEEEECCC
Confidence            456788999999999999999999999999643       4666677655432100  0000000      001111111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCcc-HHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLEG-VKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIET  160 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~-~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~  160 (299)
                      ........+.+... .....  ....+ ..+++...++.+++     ..+......||+|++++++...++..-.+    
T Consensus        96 ~~~~~tv~~nl~~~-~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~----  168 (252)
T PRK14255         96 NPFPFSIYENVIYG-LRLAG--VKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPD----  168 (252)
T ss_pred             ccCCCcHHHHHHHH-HHHcC--CCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCC----
Confidence            11111111111100 00000  00111 12333333333332     23455567899999999887665543221    


Q ss_pred             HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                       -+..+|+....++.+.+.|.+.|.+..
T Consensus       169 -----------------llllDEPt~~LD~~~~~~l~~~l~~~~  195 (252)
T PRK14255        169 -----------------VILLDEPTSALDPISSTQIENMLLELR  195 (252)
T ss_pred             -----------------EEEEcCCCccCCHHHHHHHHHHHHHHH
Confidence                             244666777777888888888887764

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=98.55  E-value=6.6e-08  Score=87.46  Aligned_cols=161  Identities=17%  Similarity=0.237  Sum_probs=88.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KSS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~~   89 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...+  +.+.+++.++....    ......+..   ...+.++..  ...
T Consensus        31 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~----~~~~~~~~~---~i~~v~q~~~~~~~  103 (268)
T PRK10419         31 VSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLN----RAQRKAFRR---DIQMVFQDSISAVN  103 (268)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccC----hhHHHHHHh---cEEEEEcChhhccC
Confidence            5677899999999999999999999999997653  55666665443210    001111100   001111110  000


Q ss_pred             c-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH--HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 P-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN--YIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRER  166 (299)
Q Consensus        90 ~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~--~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~  166 (299)
                      . ....+.+.........  ........++..+++.+++.  .+......||+|++++++...++..-.+          
T Consensus       104 ~~~t~~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~----------  171 (268)
T PRK10419        104 PRKTVREIIREPLRHLLS--LDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPK----------  171 (268)
T ss_pred             CCCCHHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCC----------
Confidence            0 0111111100000000  00112234566777777773  3456668899999999886655443111          


Q ss_pred             HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                 .+..+|+....+..+.+.+.+.|+++.
T Consensus       172 -----------lllLDEPt~~LD~~~~~~~~~~l~~~~  198 (268)
T PRK10419        172 -----------LLILDEAVSNLDLVLQAGVIRLLKKLQ  198 (268)
T ss_pred             -----------EEEEeCCCcccCHHHHHHHHHHHHHHH
Confidence                       244566667777777788888777653

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=98.55  E-value=1e-07  Score=86.35  Aligned_cols=160  Identities=14%  Similarity=0.318  Sum_probs=86.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+|+.++|.|+||+|||||+++|++.+.       .+.+.+++.++.....  .   ...+ .  +...+.++..
T Consensus        43 vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~--~---~~~~-~--~~i~~v~q~~  114 (271)
T PRK14238         43 INLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY--S---VEEL-R--TNVGMVFQKP  114 (271)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc--c---HHHH-h--hhEEEEecCC
Confidence            567789999999999999999999999999764       3566677655432100  0   0000 0  0011222111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccC----CH-HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDV----DL-NYIAKVTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v----~l-~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      ........+.+..... ... ........+++...++.+    ++ ..+......||+|++++++...++..-.+     
T Consensus       115 ~~~~~tv~eni~~~~~-~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~-----  187 (271)
T PRK14238        115 NPFPKSIYDNVTYGPK-IHG-IKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPD-----  187 (271)
T ss_pred             ccccccHHHHHHHHHH-hcC-CCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCC-----
Confidence            1111111121110000 000 000001122333333333    23 33456668899999999987665543111     


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                      .+..+|+....++.+...+.+.|++..
T Consensus       188 ----------------lllLDEPt~~LD~~~~~~l~~~l~~~~  214 (271)
T PRK14238        188 ----------------VILMDEPTSALDPISTLKVEELVQELK  214 (271)
T ss_pred             ----------------EEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence                            244667777778888888888887763

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=98.55  E-value=7.8e-07  Score=92.39  Aligned_cols=60  Identities=22%  Similarity=0.318  Sum_probs=44.3

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhc----------CCeecccchhhh--hccccccHHHHHHHHHHHHH
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQ----------ANFISVKGPELL--TMWFGESEANVRDIFDKVTM   78 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~----------~~~i~i~~~~l~--~~~~g~~~~~i~~~f~~a~~   78 (299)
                      .....++|+||||||||++++.||..+.          ..++.++...+.  ..+.|+.+..++.+++.+..
T Consensus       206 ~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~  277 (852)
T TIGR03345       206 RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKA  277 (852)
T ss_pred             CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHh
Confidence            3445789999999999999999999764          234444544443  25667778889999987753

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=98.54  E-value=1.6e-07  Score=96.07  Aligned_cols=151  Identities=15%  Similarity=0.190  Sum_probs=86.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      +++.+++|+.++|+|++|||||||++.|++...+  +.+.+++.++...    ....++..+      .+.++....-..
T Consensus       493 isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~----~~~~lr~~i------~~v~Q~~~lf~g  562 (708)
T TIGR01193       493 ISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDI----DRHTLRQFI------NYLPQEPYIFSG  562 (708)
T ss_pred             eeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHc----CHHHHHHhe------EEEecCceehhH
Confidence            4667899999999999999999999999997654  6678888776442    111122111      111111111111


Q ss_pred             hhhHHHhhcCccchhhcCCCcc-HHHHHhhhcccCCH-----------H-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEG-VKRELQELVQDVDL-----------N-YIAKVTNGFSGADLTEICQRACKLAIRQSI  158 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~-~~~R~~~l~~~v~l-----------~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~  158 (299)
                      +.++.+.-.         ..|+ .++++...++..++           + .+......+||||+|+++...+...-.+  
T Consensus       563 TI~eNi~l~---------~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~--  631 (708)
T TIGR01193       563 SILENLLLG---------AKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSK--  631 (708)
T ss_pred             HHHHHHhcc---------CCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCC--
Confidence            222222110         0010 11222222222222           1 1333446699999999987654433111  


Q ss_pred             HHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        159 ETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                         -+..+|+....+..+.+.+.++|.+.+
T Consensus       632 -------------------iliLDE~Ts~LD~~te~~i~~~L~~~~  658 (708)
T TIGR01193       632 -------------------VLILDESTSNLDTITEKKIVNNLLNLQ  658 (708)
T ss_pred             -------------------EEEEeCccccCCHHHHHHHHHHHHHhc
Confidence                               244667777888888888999888763

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=98.54  E-value=6e-08  Score=86.70  Aligned_cols=137  Identities=16%  Similarity=0.179  Sum_probs=77.7

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC-CCchhh
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK-SSPSAL   93 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~-~~~~~~   93 (299)
                      .+.+++.++|.||||||||||+++|++...+  +.+.+++..+. .    .                 ++... ......
T Consensus        21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~-~----~-----------------~q~~~~~~~~tv   78 (246)
T cd03237          21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS-Y----K-----------------PQYIKADYEGTV   78 (246)
T ss_pred             CcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEE-E----e-----------------cccccCCCCCCH
Confidence            4567899999999999999999999998764  34444442110 0    0                 00000 000011


Q ss_pred             hHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy13773         94 RETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGN  172 (299)
Q Consensus        94 ~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~  172 (299)
                      .+.+.....    ...   ....+...+++.+++..+ .+....||||++|+++...++..-.+                
T Consensus        79 ~e~l~~~~~----~~~---~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~----------------  135 (246)
T cd03237          79 RDLLSSITK----DFY---THPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDAD----------------  135 (246)
T ss_pred             HHHHHHHhh----hcc---ccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC----------------
Confidence            111111000    000   011234456666777544 45568899999999987665543211                


Q ss_pred             cccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        173 PAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                           .+..+|+....++.+.+.+.+.|+++
T Consensus       136 -----llllDEPt~~LD~~~~~~l~~~l~~~  161 (246)
T cd03237         136 -----IYLLDEPSAYLDVEQRLMASKVIRRF  161 (246)
T ss_pred             -----EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence                 23455666666777777777777765

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.54  E-value=5.3e-08  Score=86.93  Aligned_cols=152  Identities=15%  Similarity=0.238  Sum_probs=92.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhhcccc----ccHHHHHHHHHHHHHHHHhhhhcC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFG----ESEANVRDIFDKVTMENFRYAMGK   87 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g----~~~~~i~~~f~~a~~~~~~~~~~~   87 (299)
                      .+|..+-.....|+|++|+|||||+|+||+...+  +.|.+++..+.+..-+    ...+.+..+|+.|+...-.     
T Consensus        17 a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~-----   91 (352)
T COG4148          17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHY-----   91 (352)
T ss_pred             EeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccce-----
Confidence            4556566678899999999999999999998875  5677787777543211    2244566677766542100     


Q ss_pred             CCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         88 SSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRER  166 (299)
Q Consensus        88 ~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~  166 (299)
                          ..+..+.-         .+.......+..+..-+++.. |.+++..+|||+.|+++...++.+-.+.+        
T Consensus        92 ----tVrgNL~Y---------G~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LL--------  150 (352)
T COG4148          92 ----TVRGNLRY---------GMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELL--------  150 (352)
T ss_pred             ----EEecchhh---------hhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCee--------
Confidence                01111110         011112233445566678854 56777899999999998877666544432        


Q ss_pred             HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                   ..+|+..+.+.-...++.--|++.+
T Consensus       151 -------------LmDEPLaSLD~~RK~EilpylERL~  175 (352)
T COG4148         151 -------------LMDEPLASLDLPRKREILPYLERLR  175 (352)
T ss_pred             -------------eecCchhhcccchhhHHHHHHHHHH
Confidence                         2334444555556666666666654

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=98.54  E-value=6.6e-08  Score=85.78  Aligned_cols=154  Identities=17%  Similarity=0.192  Sum_probs=86.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      +++.+.+++.++|.||||+|||||+++|++.+.  .+.+.+++.++...    .  ..+      ....+.++....-. 
T Consensus        19 is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~----~--~~~------~~i~~~~q~~~~~~~   86 (237)
T TIGR00968        19 VNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRV----H--ARD------RKIGFVFQHYALFKH   86 (237)
T ss_pred             EEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC----C--hhh------cCEEEEecChhhccC
Confidence            457789999999999999999999999999765  35566666544221    0  000      00011111111100 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+..... ...  .......+++..+++.+++..+ .+....||+|+.++++...++..-.+             
T Consensus        87 ~t~~enl~~~~~-~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~-------------  150 (237)
T TIGR00968        87 LTVRDNIAFGLE-IRK--HPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQ-------------  150 (237)
T ss_pred             CcHHHHHHhHHH-hcC--CCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence            011111110000 000  0001123445566777777543 45557899999999887665543111             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                              -+..+++....++.+.+.|.+.|++.
T Consensus       151 --------llllDEP~~~LD~~~~~~~~~~l~~~  176 (237)
T TIGR00968       151 --------VLLLDEPFGALDAKVRKELRSWLRKL  176 (237)
T ss_pred             --------EEEEcCCcccCCHHHHHHHHHHHHHH
Confidence                    24456666777778888888888765

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.54  E-value=5.7e-08  Score=84.84  Aligned_cols=150  Identities=13%  Similarity=0.095  Sum_probs=85.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.|+||||||||+++|++...+  +.+.+++.++...       ..+      +...+..+...... 
T Consensus        30 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~-------~~~------~~i~~~~q~~~~~~~   96 (214)
T PRK13543         30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG-------DRS------RFMAYLGHLPGLKAD   96 (214)
T ss_pred             ceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch-------hhh------hceEEeecCcccccC
Confidence            5677899999999999999999999999997654  4555665443210       000      00011111111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+... .    .... ....++...+++.+++... ......||+|++++++...++..-.              
T Consensus        97 ~t~~e~l~~~-~----~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p--------------  156 (214)
T PRK13543         97 LSTLENLHFL-C----GLHG-RRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPA--------------  156 (214)
T ss_pred             CcHHHHHHHH-H----HhcC-CcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCC--------------
Confidence            0111111110 0    0001 1223455566677777543 4555789999999988755443211              


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                             ..+..+|+....++.+.+.|.+.|++.
T Consensus       157 -------~llllDEPt~~LD~~~~~~l~~~l~~~  183 (214)
T PRK13543        157 -------PLWLLDEPYANLDLEGITLVNRMISAH  183 (214)
T ss_pred             -------CEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence                   124456666677777777888887765

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=98.54  E-value=7.4e-08  Score=92.08  Aligned_cols=46  Identities=24%  Similarity=0.502  Sum_probs=40.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLT   59 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~   59 (299)
                      ++|.+.+++.+.|+||||+|||||+|.|.+...  .+.+.+|+.++..
T Consensus       355 isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~q  402 (580)
T COG4618         355 ISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQ  402 (580)
T ss_pred             ceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhc
Confidence            678889999999999999999999999999654  5778899988754

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.54  E-value=8.1e-08  Score=86.37  Aligned_cols=161  Identities=14%  Similarity=0.183  Sum_probs=85.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhh-ccccccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLT-MWFGESEANVRDIFDKVTMENFRYAMGKSSP   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~-~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~   90 (299)
                      ++|.+.+++.++|.|+||+|||||+++|++...+  +.+.+++.-... .......  ...+..   ...+.++......
T Consensus        29 vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~--~~~~~~---~i~~~~q~~~~~~  103 (257)
T PRK14246         29 ITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID--AIKLRK---EVGMVFQQPNPFP  103 (257)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCC--HHHHhc---ceEEEccCCccCC
Confidence            4567789999999999999999999999997654  333444322110 0000000  001000   0122222211111


Q ss_pred             -hhhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 -SALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIETEI  162 (299)
Q Consensus        91 -~~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~  162 (299)
                       ....+.+.. .  .. .....+  +..+++..+++.+++     +.+......||+|+++++....++..-.+      
T Consensus       104 ~~tv~~nl~~-~--~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~------  173 (257)
T PRK14246        104 HLSIYDNIAY-P--LK-SHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPK------  173 (257)
T ss_pred             CCcHHHHHHH-H--HH-hcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCC------
Confidence             111222211 0  00 000011  223445556565555     34456678899999999887665544221      


Q ss_pred             HHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        163 RREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                     -+..+++....++.+...+.+.|.+++
T Consensus       174 ---------------llllDEPt~~LD~~~~~~l~~~l~~~~  200 (257)
T PRK14246        174 ---------------VLLMDEPTSMIDIVNSQAIEKLITELK  200 (257)
T ss_pred             ---------------EEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence                           244566667777778888888887664

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.54  E-value=3.2e-08  Score=97.39  Aligned_cols=159  Identities=9%  Similarity=0.072  Sum_probs=87.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|+||||||||||+|+|++...  .+.+.+++.++...    .....   ..  ....+.++...... 
T Consensus        24 vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~----~~~~~---~~--~~i~~v~q~~~~~~~   94 (510)
T PRK09700         24 VNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKL----DHKLA---AQ--LGIGIIYQELSVIDE   94 (510)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCC----CHHHH---HH--CCeEEEeecccccCC
Confidence            567789999999999999999999999999875  45666776655321    10000   00  00011111111101 


Q ss_pred             hhhhHHHhhcCccchhhcCC-----CccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVPNITWEDIGG-----LEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRR  164 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r-----~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~  164 (299)
                      ....+.+. +..........     ..+..+++..+++.+++.. +.+....||||++|++....++..-.+        
T Consensus        95 ~tv~e~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~--------  165 (510)
T PRK09700         95 LTVLENLY-IGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAK--------  165 (510)
T ss_pred             CcHHHHhh-hccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCC--------
Confidence            11112221 10000000000     0123456677778888743 455668899999999987765543221        


Q ss_pred             HHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        165 EREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                   .+..+|+....++.+.+.+.+.|++.
T Consensus       166 -------------lllLDEPt~~LD~~~~~~l~~~l~~l  191 (510)
T PRK09700        166 -------------VIIMDEPTSSLTNKEVDYLFLIMNQL  191 (510)
T ss_pred             -------------EEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence                         23355555566666666666665554

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.54  E-value=8.4e-08  Score=85.72  Aligned_cols=160  Identities=15%  Similarity=0.262  Sum_probs=84.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.|+||+|||||+++|++.+.       .+.+.+++.++.....  ....++.      ...+.++..
T Consensus        23 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~--~~~~~~~------~i~~~~q~~   94 (252)
T PRK14272         23 VNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRV--DPVAMRR------RVGMVFQKP   94 (252)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCcc--CHHHhhc------eeEEEeccC
Confidence            456788999999999999999999999999764       3556677655432100  0000000      001111111


Q ss_pred             CCCc-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSP-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIET  160 (299)
Q Consensus        87 ~~~~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~  160 (299)
                      .... ....+.+.....  ...........+++..++..+++     ..+......||+|+.++++...++..-.+    
T Consensus        95 ~~~~~~t~~enl~~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~----  168 (252)
T PRK14272         95 NPFPTMSVFDNVVAGLK--LAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPE----  168 (252)
T ss_pred             ccCcCCCHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCC----
Confidence            1111 111122110000  00000001122334344443432     22344557899999999887665443111    


Q ss_pred             HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                       .+..+++....++.+.+.|.+.|++.+
T Consensus       169 -----------------llllDEP~~~LD~~~~~~l~~~l~~~~  195 (252)
T PRK14272        169 -----------------ILLMDEPTSALDPASTARIEDLMTDLK  195 (252)
T ss_pred             -----------------EEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence                             244666777777788888888887764

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.53  E-value=8.4e-08  Score=94.68  Aligned_cols=40  Identities=18%  Similarity=0.316  Sum_probs=33.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh--c--CCeeccc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC--Q--ANFISVK   53 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l--~--~~~i~i~   53 (299)
                      ++|.+.+++.++|+||||||||||+|+|++..  .  .+.+.++
T Consensus        19 is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~   62 (520)
T TIGR03269        19 ISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYH   62 (520)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEe
Confidence            56788999999999999999999999999975  2  3445554

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.53  E-value=2e-07  Score=93.00  Aligned_cols=151  Identities=15%  Similarity=0.171  Sum_probs=83.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      .++.+++|+.++|+||+|||||||++.|++...+  +.+.+++.++...    ....++..+      .+.++....-..
T Consensus       334 i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~----~~~~~~~~i------~~v~q~~~lf~~  403 (569)
T PRK10789        334 VNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKL----QLDSWRSRL------AVVSQTPFLFSD  403 (569)
T ss_pred             eeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhC----CHHHHHhhe------EEEccCCeeccc
Confidence            5567899999999999999999999999997764  5566776655332    111111110      111111111111


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-H-----------HHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-Y-----------IAKVTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~-----------LA~~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      +.++.+.-         .+.....++....++.+++. .           +......+|||+.|+++...++..-.+   
T Consensus       404 ti~~Ni~~---------~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~---  471 (569)
T PRK10789        404 TVANNIAL---------GRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAE---  471 (569)
T ss_pred             cHHHHHhc---------CCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC---
Confidence            22222210         00001122222223323321 1           223335699999999987654433111   


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                        -+..+|+....++.+.+.+.+.|.+..
T Consensus       472 ------------------illlDEpts~LD~~~~~~i~~~l~~~~  498 (569)
T PRK10789        472 ------------------ILILDDALSAVDGRTEHQILHNLRQWG  498 (569)
T ss_pred             ------------------EEEEECccccCCHHHHHHHHHHHHHHh
Confidence                              244667777778888888888888764

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.52  E-value=4.8e-08  Score=98.47  Aligned_cols=136  Identities=16%  Similarity=0.207  Sum_probs=72.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhhc-----cc-cccHHHHHHHHHHHHHHHHhhhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTM-----WF-GESEANVRDIFDKVTMENFRYAM   85 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~-----~~-g~~~~~i~~~f~~a~~~~~~~~~   85 (299)
                      ++|.+.+++.++|+|+||||||||+++|++.+.+  +.+.+++..+...     .. ......++.+..  ....+..+.
T Consensus        35 is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~--~~ig~v~Q~  112 (623)
T PRK10261         35 LSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRG--ADMAMIFQE  112 (623)
T ss_pred             eEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhC--CCEEEEEeC
Confidence            5778899999999999999999999999998754  4444554332100     00 001111111110  000111111


Q ss_pred             c--CCCc-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH----HHHHhcCCCCHHHHHHHHHHHHHHH
Q psy13773         86 G--KSSP-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN----YIAKVTNGFSGADLTEICQRACKLA  153 (299)
Q Consensus        86 ~--~~~~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~----~LA~~t~glSggDl~~Lv~~A~~~a  153 (299)
                      .  .... ....+.+..... .... ....+..+|+..+++.+++.    .+......||||+.|+++...++..
T Consensus       113 ~~~~l~~~~tv~e~l~~~~~-~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~  185 (623)
T PRK10261        113 PMTSLNPVFTVGEQIAESIR-LHQG-ASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSC  185 (623)
T ss_pred             chhhcCCCCCHHHHHHHHHH-HhcC-CCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhC
Confidence            0  0111 112222211000 0000 01123346777888888883    3556778999999999998776654

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.52  E-value=4.4e-08  Score=96.42  Aligned_cols=160  Identities=11%  Similarity=0.097  Sum_probs=91.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc---CC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG---KS   88 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~---~~   88 (299)
                      ++|.+.+++.++|+||||||||||+++|++...+  +.+.+++.++...   .....++   .   ...+.++..   ..
T Consensus       282 isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~~~---~---~i~~v~q~~~~~~~  352 (510)
T PRK09700        282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPR---SPLDAVK---K---GMAYITESRRDNGF  352 (510)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCC---CHHHHHH---C---CcEEccCccccCCC
Confidence            4677899999999999999999999999997653  5566666544211   0000010   0   001222210   01


Q ss_pred             Cc-hhhhHHHhhcCccc-----hhh--cCCCccHHHHHhhhcccCCHH-H-HHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy13773         89 SP-SALRETIVEVPNIT-----WED--IGGLEGVKRELQELVQDVDLN-Y-IAKVTNGFSGADLTEICQRACKLAIRQSI  158 (299)
Q Consensus        89 ~~-~~~~~~l~~l~~~l-----~~~--~~r~p~~~~R~~~l~~~v~l~-~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~  158 (299)
                      .. ....+.+. +....     ...  +.......+++..+++.+++. . +.+....||||++|++....++..-.   
T Consensus       353 ~~~~tv~e~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p---  428 (510)
T PRK09700        353 FPNFSIAQNMA-ISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCP---  428 (510)
T ss_pred             cCCCcHHHHhc-cccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCC---
Confidence            11 11112211 11000     000  000112234556777888884 3 45666889999999998766554311   


Q ss_pred             HHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        159 ETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                        ..+..+|+....++.+.+.+.+.|++.+
T Consensus       429 ------------------~lLlLDEPt~~LD~~~~~~l~~~l~~l~  456 (510)
T PRK09700        429 ------------------EVIIFDEPTRGIDVGAKAEIYKVMRQLA  456 (510)
T ss_pred             ------------------CEEEECCCCCCcCHHHHHHHHHHHHHHH
Confidence                              1245677778888888899998888763

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.52  E-value=6.8e-08  Score=90.13  Aligned_cols=134  Identities=18%  Similarity=0.219  Sum_probs=88.4

Q ss_pred             hhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC-------CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhh
Q psy13773         13 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA-------NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAM   85 (299)
Q Consensus        13 ~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~-------~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~   85 (299)
                      -++|.+.+|+.+.|+|.+|+|||..+++|.+.+..       +.+.+++.++...    +++.++.+...-....|+..+
T Consensus        28 ~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~----se~~lr~iRG~~I~MIFQEPM  103 (534)
T COG4172          28 GISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA----SERQLRGVRGNKIGMIFQEPM  103 (534)
T ss_pred             cceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC----CHHHHhhhcccceEEEecccc
Confidence            36788999999999999999999999999998753       4567788887654    555565544322222333344


Q ss_pred             cCCCchhhh-HHHhhcCccchhhcCCCccHHHHHhhhcccCCH----HHHHHhcCCCCHHHHHHHHHHHHHH
Q psy13773         86 GKSSPSALR-ETIVEVPNITWEDIGGLEGVKRELQELVQDVDL----NYIAKVTNGFSGADLTEICQRACKL  152 (299)
Q Consensus        86 ~~~~~~~~~-~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l----~~LA~~t~glSggDl~~Lv~~A~~~  152 (299)
                      .+.++-... ..+.+... +... .+....++|+.++++.+++    ..+..+++.+|||+.|+++.+.++.
T Consensus       104 tSLNPl~tIg~Qi~E~l~-~Hrg-~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALa  173 (534)
T COG4172         104 TSLNPLHTIGKQLAEVLR-LHRG-LSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALA  173 (534)
T ss_pred             cccCcHhHHHHHHHHHHH-HHhc-ccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHc
Confidence            443332222 22222110 0100 1134567788889999988    4588999999999999999765443

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=98.52  E-value=8.2e-08  Score=86.97  Aligned_cols=155  Identities=14%  Similarity=0.101  Sum_probs=88.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC---
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS---   88 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~---   88 (299)
                      ++|.+.+++.++|.||||+|||||+++|++.+.+  +.+.+++.++...        .   ..  ....+.++....   
T Consensus        26 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~--------~---~~--~~i~~v~q~~~~~~~   92 (272)
T PRK15056         26 ASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQA--------L---QK--NLVAYVPQSEEVDWS   92 (272)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHh--------h---cc--ceEEEeccccccccC
Confidence            5677889999999999999999999999998654  5566665543210        0   00  000111111000   


Q ss_pred             CchhhhHHHhhcCccchh-hcCCC--ccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         89 SPSALRETIVEVPNITWE-DIGGL--EGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRR  164 (299)
Q Consensus        89 ~~~~~~~~l~~l~~~l~~-~~~r~--p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~  164 (299)
                      ......+.+. +.. ... .....  ....+++..+++.+++.. +......||+|+.+++....++..-.+        
T Consensus        93 ~~~~~~~~i~-~~~-~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~--------  162 (272)
T PRK15056         93 FPVLVEDVVM-MGR-YGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQ--------  162 (272)
T ss_pred             CCcchhhhee-ccc-ccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCC--------
Confidence            0000111110 000 000 00001  122445566777778854 445567899999999887665543111        


Q ss_pred             HHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        165 EREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                   .+..+|+....++.+.+.|.+.|++.+
T Consensus       163 -------------llllDEPt~~LD~~~~~~l~~~L~~~~  189 (272)
T PRK15056        163 -------------VILLDEPFTGVDVKTEARIISLLRELR  189 (272)
T ss_pred             -------------EEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence                         244667777778888888888887764

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.51  E-value=1.4e-07  Score=86.88  Aligned_cols=163  Identities=13%  Similarity=0.276  Sum_probs=89.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|+|+||+|||||+++|++.+.       .+.+.+++.++...  ......++.      ...+.++..
T Consensus        64 is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~--~~~~~~~~~------~i~~v~q~~  135 (305)
T PRK14264         64 VSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQD--GVNLVELRK------RVGMVFQSP  135 (305)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc--cccHHHHhh------ceEEEccCC
Confidence            567789999999999999999999999999763       46677776554311  000001110      001111111


Q ss_pred             CCCchhhhHHHhh-cCc--cchh-----hcCCC-cc-HHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVE-VPN--ITWE-----DIGGL-EG-VKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACK  151 (299)
Q Consensus        87 ~~~~~~~~~~l~~-l~~--~l~~-----~~~r~-p~-~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~  151 (299)
                      ........+.+.. ...  ..+.     ..... .. ..+++..+++.+++     ..+......||+|+.++++...++
T Consensus       136 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL  215 (305)
T PRK14264        136 NPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCL  215 (305)
T ss_pred             ccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHH
Confidence            1111111111110 000  0000     00000 11 13445556665554     233455688999999999877655


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773        152 LAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       152 ~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P  205 (299)
                      ..-.+                     .+..+++....++.+...|.+.|++...
T Consensus       216 ~~~p~---------------------lLLLDEPtsgLD~~~~~~l~~~L~~~~~  248 (305)
T PRK14264        216 AVDPE---------------------VILMDEPASALDPIATSKIEDLIEELAE  248 (305)
T ss_pred             hcCCC---------------------EEEEeCCcccCCHHHHHHHHHHHHHHhc
Confidence            43221                     2446667777778888888888887743

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.50  E-value=5.2e-08  Score=95.96  Aligned_cols=153  Identities=12%  Similarity=0.122  Sum_probs=85.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.||||||||||+++|++.+.+  +.+.+++.++...    .....+   .  ....+.++...... 
T Consensus        30 vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----~~~~~~---~--~~i~~v~q~~~~~~~  100 (510)
T PRK15439         30 IDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARL----TPAKAH---Q--LGIYLVPQEPLLFPN  100 (510)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCC----CHHHHH---h--CCEEEEeccCccCCC
Confidence            5677899999999999999999999999998754  5566666554321    111100   0  00011111111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+.. .  .    .......+++..+++.+++.. +.+....||||+.|++....++..-.+             
T Consensus       101 ~tv~e~l~~-~--~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~-------------  160 (510)
T PRK15439        101 LSVKENILF-G--L----PKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSR-------------  160 (510)
T ss_pred             CcHHHHhhc-c--c----ccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCC-------------
Confidence            111111110 0  0    001123456667777788754 455668899999999987765543211             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                              .+..+|+....++.+.+.|.+.|++.
T Consensus       161 --------lllLDEPt~~LD~~~~~~l~~~l~~~  186 (510)
T PRK15439        161 --------ILILDEPTASLTPAETERLFSRIREL  186 (510)
T ss_pred             --------EEEEECCCCCCCHHHHHHHHHHHHHH
Confidence                    23345555556666666666665554

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.50  E-value=4.8e-08  Score=95.93  Aligned_cols=159  Identities=13%  Similarity=0.096  Sum_probs=85.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc----CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ----ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS-   88 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~----~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~-   88 (299)
                      ++|.+.+++.++|+||||||||||+++|++...    .+.+.+++.++...    ...   ....  ....+.++.... 
T Consensus        20 isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~----~~~---~~~~--~~i~~v~q~~~~~   90 (500)
T TIGR02633        20 IDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKAS----NIR---DTER--AGIVIIHQELTLV   90 (500)
T ss_pred             eEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCC----CHH---HHHh--CCEEEEeeccccC
Confidence            577889999999999999999999999999765    35566666554321    000   0000  000111111110 


Q ss_pred             CchhhhHHHhhcCccchhh--cCCCccHHHHHhhhcccCCHHHH--HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         89 SPSALRETIVEVPNITWED--IGGLEGVKRELQELVQDVDLNYI--AKVTNGFSGADLTEICQRACKLAIRQSIETEIRR  164 (299)
Q Consensus        89 ~~~~~~~~l~~l~~~l~~~--~~r~p~~~~R~~~l~~~v~l~~L--A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~  164 (299)
                      ......+.+. +.......  ........+++..+++.+++...  ......||||++|++....++..-.+        
T Consensus        91 ~~~tv~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~--------  161 (500)
T TIGR02633        91 PELSVAENIF-LGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQAR--------  161 (500)
T ss_pred             CCCcHHHHHH-hhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCC--------
Confidence            0011111111 11000000  00011234566677777877543  24467899999999988776654222        


Q ss_pred             HHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        165 EREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                   -+..+|+....++.+.+.+.+.|++.
T Consensus       162 -------------lllLDEPt~~LD~~~~~~l~~~l~~l  187 (500)
T TIGR02633       162 -------------LLILDEPSSSLTEKETEILLDIIRDL  187 (500)
T ss_pred             -------------EEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence                         13344555555555666666555544

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.50  E-value=1.5e-07  Score=84.40  Aligned_cols=141  Identities=12%  Similarity=0.199  Sum_probs=82.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.++|.||||+|||||+++|++.+.+  +.+.+++..-+.           .+++...   +.    .....
T Consensus        23 vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~-----------~v~q~~~---~~----~~l~~   84 (251)
T PRK09544         23 VSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIG-----------YVPQKLY---LD----TTLPL   84 (251)
T ss_pred             EEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEE-----------Eeccccc---cc----cccCh
Confidence            5678899999999999999999999999998754  334443211000           0010000   00    00000


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLA  170 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~  170 (299)
                      ...+.+. +    ..     ....+++..+++.+++..+ ......||+|+.++++...++..-.               
T Consensus        85 ~~~~~~~-~----~~-----~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p---------------  139 (251)
T PRK09544         85 TVNRFLR-L----RP-----GTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRP---------------  139 (251)
T ss_pred             hHHHHHh-c----cc-----cccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCC---------------
Confidence            0011110 0    00     0012345566777777554 4556889999999998765443311               


Q ss_pred             CCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        171 GNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                            ..+..+|+....++.+.+.|.+.|.+.
T Consensus       140 ------~lllLDEPt~~LD~~~~~~l~~~L~~~  166 (251)
T PRK09544        140 ------QLLVLDEPTQGVDVNGQVALYDLIDQL  166 (251)
T ss_pred             ------CEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence                  124466777777788888888888765

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=98.50  E-value=2.1e-07  Score=78.88  Aligned_cols=43  Identities=19%  Similarity=0.422  Sum_probs=35.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPE   56 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~   56 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...+  +.+.+++.+
T Consensus        21 i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~   65 (178)
T cd03247          21 LSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVP   65 (178)
T ss_pred             EEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEE
Confidence            5678899999999999999999999999998653  455555543

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.50  E-value=1.7e-07  Score=84.55  Aligned_cols=162  Identities=12%  Similarity=0.189  Sum_probs=83.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.|+||+|||||+++|++...       .+.+.+++..+...........++.      ...+.++..
T Consensus        35 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~------~i~~~~q~~  108 (265)
T PRK14252         35 INMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRM------RISMVFQKP  108 (265)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhc------cEEEEccCC
Confidence            456788999999999999999999999999764       3456666543321000000000000      001122111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      ..-.....+.+.. ...... +......+++...+++.+++     +.+......||+|+++++....++..-.+     
T Consensus       109 ~~~~~tv~eni~~-~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~-----  181 (265)
T PRK14252        109 NPFPKSIFENVAY-GLRIRG-VKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPE-----  181 (265)
T ss_pred             cCCcchHHHHHHh-HHHHcC-CChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCC-----
Confidence            1111111121110 000000 00001112344444443432     23445668899999999886654443221     


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                      -+..+|+....++.+.+.|.+.|++.+
T Consensus       182 ----------------llllDEPt~gLD~~~~~~l~~~l~~l~  208 (265)
T PRK14252        182 ----------------ILLFDEPTSALDPIATASIEELISDLK  208 (265)
T ss_pred             ----------------EEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence                            244566666777777888888887764

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=98.50  E-value=2.3e-07  Score=94.65  Aligned_cols=151  Identities=16%  Similarity=0.166  Sum_probs=87.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      .++.+++|+.++|+|++|||||||++.|++...  .+.+.+++.++....    ...++...      .+.++....-..
T Consensus       476 i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~----~~~~r~~i------~~v~q~~~lf~~  545 (694)
T TIGR01846       476 LNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIAD----PAWLRRQM------GVVLQENVLFSR  545 (694)
T ss_pred             ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCC----HHHHHHhC------eEEccCCeehhh
Confidence            566789999999999999999999999999765  467778887664321    11111100      111111111111


Q ss_pred             hhhHHHhhcCccchhhcCCCcc-HHHHHhhhcccCCHHH------------HHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEG-VKRELQELVQDVDLNY------------IAKVTNGFSGADLTEICQRACKLAIRQSI  158 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~-~~~R~~~l~~~v~l~~------------LA~~t~glSggDl~~Lv~~A~~~a~~r~~  158 (299)
                      +.++.+.-         . .|+ ..++....++..++.+            +......+|||++|+++...++..-.+  
T Consensus       546 ti~eNi~~---------~-~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~--  613 (694)
T TIGR01846       546 SIRDNIAL---------C-NPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPR--  613 (694)
T ss_pred             hHHHHHhc---------C-CCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCC--
Confidence            22222211         0 011 1222223333333321            233346799999999987665533111  


Q ss_pred             HHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773        159 ETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P  205 (299)
                                         -+..+|+....++.+.+.+.++|.+..+
T Consensus       614 -------------------ililDEpts~LD~~~~~~i~~~l~~~~~  641 (694)
T TIGR01846       614 -------------------ILIFDEATSALDYESEALIMRNMREICR  641 (694)
T ss_pred             -------------------EEEEECCCcCCCHHHHHHHHHHHHHHhC
Confidence                               2446677788888888999999988743

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=98.49  E-value=7.7e-08  Score=85.07  Aligned_cols=44  Identities=20%  Similarity=0.473  Sum_probs=36.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPEL   57 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l   57 (299)
                      +++.+.+++.++|.||||+|||||+++|++...  .+.+.+++.++
T Consensus        20 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~   65 (236)
T cd03253          20 VSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDI   65 (236)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEh
Confidence            467788999999999999999999999999765  35566666554

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=98.49  E-value=1.3e-07  Score=79.69  Aligned_cols=43  Identities=26%  Similarity=0.478  Sum_probs=35.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPE   56 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~   56 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...+  +.+.+++.+
T Consensus        21 i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~   65 (171)
T cd03228          21 VSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVD   65 (171)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEE
Confidence            5677899999999999999999999999998764  445555443

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.48  E-value=7.4e-08  Score=83.44  Aligned_cols=134  Identities=17%  Similarity=0.187  Sum_probs=78.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-----CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS   88 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-----~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~   88 (299)
                      ++|.+.+++.++|.||||||||||+++|++...     .+.+.+++.++...         ...+.  +...+.++....
T Consensus        26 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~---------~~~~~--~~i~~~~q~~~~   94 (202)
T cd03233          26 FSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEF---------AEKYP--GEIIYVSEEDVH   94 (202)
T ss_pred             EEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccc---------hhhhc--ceEEEEeccccc
Confidence            466789999999999999999999999999865     45566666544211         00000  000111111000


Q ss_pred             Cc-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         89 SP-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        89 ~~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                      .. ....+.+..            .   .+.       .   .......||+|+.+++....++..-.+           
T Consensus        95 ~~~~tv~~~l~~------------~---~~~-------~---~~~~~~~LS~Ge~qrl~laral~~~p~-----------  138 (202)
T cd03233          95 FPTLTVRETLDF------------A---LRC-------K---GNEFVRGISGGERKRVSIAEALVSRAS-----------  138 (202)
T ss_pred             CCCCcHHHHHhh------------h---hhh-------c---cccchhhCCHHHHHHHHHHHHHhhCCC-----------
Confidence            00 011111100            0   000       0   234457899999999887665544222           


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                -+..+|+....++.+.+.|.+.+++..
T Consensus       139 ----------llllDEPt~~LD~~~~~~~~~~l~~~~  165 (202)
T cd03233         139 ----------VLCWDNSTRGLDSSTALEILKCIRTMA  165 (202)
T ss_pred             ----------EEEEcCCCccCCHHHHHHHHHHHHHHH
Confidence                      244667777788889999999988763

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=98.47  E-value=1.2e-07  Score=95.37  Aligned_cols=155  Identities=14%  Similarity=0.146  Sum_probs=87.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC-----CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA-----NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS   88 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~-----~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~   88 (299)
                      +++.+++|+.++|.||+|+|||||+++|++....     +.+.+++..+..       ..+    +.  ...+..+....
T Consensus        44 vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~-------~~~----~~--~i~yv~Q~~~~  110 (617)
T TIGR00955        44 VSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA-------KEM----RA--ISAYVQQDDLF  110 (617)
T ss_pred             CEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH-------HHH----hh--hceeecccccc
Confidence            5667899999999999999999999999997643     346666654321       111    11  11222222211


Q ss_pred             Cc-hhhhHHHhhcCccch-hhcCCCccHHHHHhhhcccCCHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         89 SP-SALRETIVEVPNITW-EDIGGLEGVKRELQELVQDVDLNYIAKVT-------NGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        89 ~~-~~~~~~l~~l~~~l~-~~~~r~p~~~~R~~~l~~~v~l~~LA~~t-------~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      -. .+.++.+.-. ..+. +.-....+..+|++.+++.+++...++..       .++|||+++++....++..-.+   
T Consensus       111 ~~~lTV~e~l~f~-~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~---  186 (617)
T TIGR00955       111 IPTLTVREHLMFQ-AHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPP---  186 (617)
T ss_pred             CccCcHHHHHHHH-HhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCC---
Confidence            11 1222322210 0000 00000123445677888888886554322       3699999999987765544221   


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                        -+..+|+....+.-+..++.+.|++.
T Consensus       187 ------------------vlllDEPtsgLD~~~~~~l~~~L~~l  212 (617)
T TIGR00955       187 ------------------LLFCDEPTSGLDSFMAYSVVQVLKGL  212 (617)
T ss_pred             ------------------EEEeeCCCcchhHHHHHHHHHHHHHH
Confidence                              13345555666666777777776665

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=98.47  E-value=2.5e-07  Score=94.63  Aligned_cols=46  Identities=30%  Similarity=0.533  Sum_probs=39.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLT   59 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~   59 (299)
                      .++.+++|+.++|+||+|||||||++.|++...+  +.+.+++.++..
T Consensus       500 isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~  547 (711)
T TIGR00958       500 LTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQ  547 (711)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHh
Confidence            5677899999999999999999999999997764  667788877654

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=98.46  E-value=8.9e-08  Score=95.00  Aligned_cols=45  Identities=27%  Similarity=0.529  Sum_probs=37.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELL   58 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~   58 (299)
                      .++.+++|+.++|+||+|||||||++.|++...+  +.+.+++.++.
T Consensus       337 ~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~  383 (544)
T TIGR01842       337 ISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLK  383 (544)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehh
Confidence            5577899999999999999999999999998764  55667766553

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=98.45  E-value=1.7e-07  Score=81.10  Aligned_cols=44  Identities=27%  Similarity=0.437  Sum_probs=36.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh----cCCeecccchhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPEL   57 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l----~~~~i~i~~~~l   57 (299)
                      ++|.+.+++.++|.|+||+|||||+++|++..    ..+.+.+++.++
T Consensus        19 is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~   66 (200)
T cd03217          19 VNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDI   66 (200)
T ss_pred             cceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEEC
Confidence            45778999999999999999999999999973    346677776654

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.45  E-value=4.6e-08  Score=81.88  Aligned_cols=43  Identities=23%  Similarity=0.354  Sum_probs=35.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPE   56 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~   56 (299)
                      .+|.+.+++.++|.||||+|||||+++|++...+  +.+.+++.+
T Consensus        19 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~   63 (163)
T cd03216          19 VSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKE   63 (163)
T ss_pred             eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE
Confidence            4677899999999999999999999999998754  445555443

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>KOG0057|consensus

Probab=98.45  E-value=4.9e-07  Score=87.23  Aligned_cols=47  Identities=17%  Similarity=0.362  Sum_probs=41.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-CCeecccchhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-ANFISVKGPELLTM   60 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-~~~i~i~~~~l~~~   60 (299)
                      ++|.|+.|+.|.|+|+|||||||++|+|-+-.. .+.+.||+.++...
T Consensus       371 vsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~  418 (591)
T KOG0057|consen  371 VSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEV  418 (591)
T ss_pred             eeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhh
Confidence            678899999999999999999999999999664 67889999988654

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=98.45  E-value=3.4e-07  Score=82.24  Aligned_cols=44  Identities=25%  Similarity=0.369  Sum_probs=36.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPEL   57 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l   57 (299)
                      ++|.+.+++.++|.|++|+|||||+++|++...  .+.+.+++.++
T Consensus        40 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i   85 (257)
T cd03288          40 VKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDI   85 (257)
T ss_pred             EEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEh
Confidence            456788999999999999999999999999765  45566766554

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=98.45  E-value=1e-07  Score=105.77  Aligned_cols=154  Identities=15%  Similarity=0.217  Sum_probs=95.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+|+.++|.||||+|||||+|+|++...+  +.+.+++.++...        ...+.+   ...++++...... 
T Consensus      1958 ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~--------~~~~r~---~IGy~pQ~~~L~~~ 2026 (2272)
T TIGR01257      1958 LCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTN--------ISDVHQ---NMGYCPQFDAIDDL 2026 (2272)
T ss_pred             eEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcch--------HHHHhh---hEEEEeccccCCCC
Confidence            5678899999999999999999999999998754  5666776554211        111111   1133343322211 


Q ss_pred             hhhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                      -..++.+.-.     ..+...+  +.+++++.+++.+++...+ ++...||||++|+|....++..-.+           
T Consensus      2027 LTv~E~L~l~-----a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~----------- 2090 (2272)
T TIGR01257      2027 LTGREHLYLY-----ARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPP----------- 2090 (2272)
T ss_pred             CCHHHHHHHH-----HHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCC-----------
Confidence            1222322210     0111122  2345666788889996655 5568999999999987665543211           


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                -+..+|+....++.+.+.+.+.|++.+
T Consensus      2091 ----------VLLLDEPTsGLDp~sr~~l~~lL~~l~ 2117 (2272)
T TIGR01257      2091 ----------LVLLDEPTTGMDPQARRMLWNTIVSII 2117 (2272)
T ss_pred             ----------EEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence                      244667777778888888888887763

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=98.45  E-value=2.9e-07  Score=79.85  Aligned_cols=144  Identities=13%  Similarity=0.163  Sum_probs=79.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      +++.+.+++.++|.|++|+|||||+++|++...  .+.+.+++.++...    ....++      ....+.++.......
T Consensus        27 isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----~~~~~~------~~i~~v~q~~~~~~~   96 (207)
T cd03369          27 VSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTI----PLEDLR------SSLTIIPQDPTLFSG   96 (207)
T ss_pred             ceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHC----CHHHHH------hhEEEEecCCcccCc
Confidence            456788999999999999999999999999765  45566666544221    000010      000122211111111


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAG  171 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~  171 (299)
                      ...+.+..    ..    .. . .+++...++      +......||+|+++++....++..-.+               
T Consensus        97 tv~~~l~~----~~----~~-~-~~~~~~~l~------~~~~~~~LS~G~~qrv~laral~~~p~---------------  145 (207)
T cd03369          97 TIRSNLDP----FD----EY-S-DEEIYGALR------VSEGGLNLSQGQRQLLCLARALLKRPR---------------  145 (207)
T ss_pred             cHHHHhcc----cC----CC-C-HHHHHHHhh------ccCCCCcCCHHHHHHHHHHHHHhhCCC---------------
Confidence            11122210    00    01 1 111222222      345668899999999887655533111               


Q ss_pred             CcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        172 NPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                            .+..+|+....++.+.+.|.+.|++..
T Consensus       146 ------llllDEP~~~LD~~~~~~l~~~l~~~~  172 (207)
T cd03369         146 ------VLVLDEATASIDYATDALIQKTIREEF  172 (207)
T ss_pred             ------EEEEeCCcccCCHHHHHHHHHHHHHhc
Confidence                  234556666667777777877777653

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=98.44  E-value=1.6e-07  Score=93.51  Aligned_cols=144  Identities=17%  Similarity=0.232  Sum_probs=81.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      +++.+++++.++|+||+|||||||++.|++...  .+.+.+++.++...    ....++..+..      ..  ++  ..
T Consensus       361 vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~----~~~~~~~~i~~------v~--q~--~~  426 (555)
T TIGR01194       361 IDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSAD----SRDDYRDLFSA------IF--AD--FH  426 (555)
T ss_pred             ceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC----CHHHHHhhCcE------Ec--cC--hh
Confidence            557788999999999999999999999999765  46677777666432    11112211110      00  00  00


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhc------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVT------NGFSGADLTEICQRACKLAIRQSIETEIRR  164 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t------~glSggDl~~Lv~~A~~~a~~r~~~~~~~~  164 (299)
                      .....+.+  + .     .....+++....++.+++.+ +....      ..+|||++|+++...++..-.+        
T Consensus       427 lf~~ti~~--n-~-----~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~--------  490 (555)
T TIGR01194       427 LFDDLIGP--D-E-----GEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRP--------  490 (555)
T ss_pred             hhhhhhhc--c-c-----ccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCC--------
Confidence            00000000  0 0     00112334445555555533 33333      3499999999887654433111        


Q ss_pred             HHHHhcCCcccccccccCCCCCCcccccHHHHHHHH
Q psy13773        165 EREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAM  200 (299)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL  200 (299)
                                   -+..+|+....++-+.+.+.+++
T Consensus       491 -------------ililDE~ts~LD~~~~~~i~~~l  513 (555)
T TIGR01194       491 -------------ILLFDEWAADQDPAFKRFFYEEL  513 (555)
T ss_pred             -------------EEEEeCCccCCCHHHHHHHHHHH
Confidence                         24466777777888888887765

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.44  E-value=5e-08  Score=78.71  Aligned_cols=45  Identities=29%  Similarity=0.488  Sum_probs=37.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELL   58 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~   58 (299)
                      +++.+.+++.++|+|++|||||||+++|++....  +.+.+++.++.
T Consensus         4 v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~   50 (137)
T PF00005_consen    4 VSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDIS   50 (137)
T ss_dssp             EEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGT
T ss_pred             eEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccc
Confidence            4677889999999999999999999999998764  45666665554

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.44  E-value=1.5e-07  Score=92.53  Aligned_cols=161  Identities=9%  Similarity=0.046  Sum_probs=92.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc---CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc---C
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG---K   87 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~---~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~---~   87 (299)
                      ++|.+.+++.++|+||||+|||||+|+|++...   .+.+.+++.++....   .....+.      ...+.++..   .
T Consensus       281 vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~---~~~~~~~------~i~~v~q~~~~~~  351 (506)
T PRK13549        281 VSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRN---PQQAIAQ------GIAMVPEDRKRDG  351 (506)
T ss_pred             eeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCC---HHHHHHC------CCEEeCcchhhCC
Confidence            467889999999999999999999999999764   456666665542110   0000000      001111110   0


Q ss_pred             C-CchhhhHHHhhcC-ccchh-hcCCCccHHHHHhhhcccCCHH--HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         88 S-SPSALRETIVEVP-NITWE-DIGGLEGVKRELQELVQDVDLN--YIAKVTNGFSGADLTEICQRACKLAIRQSIETEI  162 (299)
Q Consensus        88 ~-~~~~~~~~l~~l~-~~l~~-~~~r~p~~~~R~~~l~~~v~l~--~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~  162 (299)
                      . ......+.+.... ..... .........+++..+++.+++.  .+.+....||||++|++....++..-.+      
T Consensus       352 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~------  425 (506)
T PRK13549        352 IVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPK------  425 (506)
T ss_pred             CcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCC------
Confidence            0 0011111111000 00000 0000112335667788888884  3456678999999999988765543221      


Q ss_pred             HHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        163 RREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                     .+..+|+....++.+.+.+.+.|++++
T Consensus       426 ---------------lllLDEPt~~LD~~~~~~l~~~l~~l~  452 (506)
T PRK13549        426 ---------------ILILDEPTRGIDVGAKYEIYKLINQLV  452 (506)
T ss_pred             ---------------EEEEcCCCCCcCHhHHHHHHHHHHHHH
Confidence                           245677788888888889888887663

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=98.44  E-value=3.6e-07  Score=79.86  Aligned_cols=44  Identities=23%  Similarity=0.344  Sum_probs=36.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPEL   57 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l   57 (299)
                      ++|.+.+++.++|.||||||||||+++|++...  .+.+.+++.++
T Consensus        20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~   65 (218)
T cd03290          20 INIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNE   65 (218)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCccc
Confidence            467788999999999999999999999999764  45566666544

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.44  E-value=8e-08  Score=94.16  Aligned_cols=160  Identities=13%  Similarity=0.086  Sum_probs=84.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC-Cc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS-SP   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~-~~   90 (299)
                      ++|.+.+++.++|+||||||||||+++|++.+.+  +.+.+++.++...    ...   ..+.  ....+.++.... ..
T Consensus        17 vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----~~~---~~~~--~~i~~v~q~~~~~~~   87 (491)
T PRK10982         17 VNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFK----SSK---EALE--NGISMVHQELNLVLQ   87 (491)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCC----CHH---HHHh--CCEEEEecccccccC
Confidence            5677899999999999999999999999998754  5566676554221    000   0000  000111111110 00


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+..................+++..+++.+++.. +.+....||||++|++....++..-.+             
T Consensus        88 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~-------------  154 (491)
T PRK10982         88 RSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAK-------------  154 (491)
T ss_pred             CCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCC-------------
Confidence            111121110000000000001122345667777777743 345568899999999987765543221             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                              .+..+|+....++.+.+.+.+.|++.
T Consensus       155 --------lllLDEPt~~LD~~~~~~l~~~l~~l  180 (491)
T PRK10982        155 --------IVIMDEPTSSLTEKEVNHLFTIIRKL  180 (491)
T ss_pred             --------EEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence                    13344555555555555555555443

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.43  E-value=2.9e-07  Score=93.03  Aligned_cols=166  Identities=12%  Similarity=0.127  Sum_probs=86.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhhccc----cccHHHHHHHHHHHHHH-HHhhhh-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWF----GESEANVRDIFDKVTME-NFRYAM-   85 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~----g~~~~~i~~~f~~a~~~-~~~~~~-   85 (299)
                      ++|.+.+++.++|+||||||||||+|+|++...+  +.|.+++...+....    ......+..++...... .+.... 
T Consensus        20 vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~   99 (638)
T PRK10636         20 ATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQLEAQLH   99 (638)
T ss_pred             cEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHH
Confidence            6678899999999999999999999999997654  445555432111000    00011222222211000 000000 


Q ss_pred             -cCCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH--HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         86 -GKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN--YIAKVTNGFSGADLTEICQRACKLAIRQSIETEI  162 (299)
Q Consensus        86 -~~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~--~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~  162 (299)
                       ...... . ..+..+....+ . ....+...|+..+++.+++.  .+......||||+.+++....++..-.+      
T Consensus       100 ~~~~~~~-~-~~~~~~~~~~~-~-~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~------  169 (638)
T PRK10636        100 DANERND-G-HAIATIHGKLD-A-IDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSD------  169 (638)
T ss_pred             HHhccCC-H-HHHHHHHHHHH-h-cCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCC------
Confidence             000000 0 00000000000 0 01123456777888888884  4556678899999999987765543221      


Q ss_pred             HHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        163 RREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                     .+..+++....++.+.+.+.+.|+++.
T Consensus       170 ---------------lLLLDEPtn~LD~~~~~~L~~~L~~~~  196 (638)
T PRK10636        170 ---------------LLLLDEPTNHLDLDAVIWLEKWLKSYQ  196 (638)
T ss_pred             ---------------EEEEcCCCCcCCHHHHHHHHHHHHhCC
Confidence                           233445555555555666666665543

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.43  E-value=2.4e-07  Score=90.82  Aligned_cols=162  Identities=10%  Similarity=0.096  Sum_probs=90.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc---CCeecccchhhhhcccc-ccHHHHHHHHHHHHHHHHhhhhcCCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTMWFG-ESEANVRDIFDKVTMENFRYAMGKSS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~---~~~i~i~~~~l~~~~~g-~~~~~i~~~f~~a~~~~~~~~~~~~~   89 (299)
                      ++|.+.+++.++|.||||||||||+|+|++...   .+.+.+++.++...... .....+..+++...   +.    ...
T Consensus       279 vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~---~~----~~~  351 (490)
T PRK10938        279 LSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLH---LD----YRV  351 (490)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHH---hh----ccc
Confidence            567789999999999999999999999999654   35566666543210000 00001111111000   00    000


Q ss_pred             chhhhHHHhh-cCccchhhcCCC-ccHHHHHhhhcccCCHHH-HH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVE-VPNITWEDIGGL-EGVKRELQELVQDVDLNY-IA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRRE  165 (299)
Q Consensus        90 ~~~~~~~l~~-l~~~l~~~~~r~-p~~~~R~~~l~~~v~l~~-LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~  165 (299)
                      .....+.+.. ..... ...... ....+++..+++.+++.. +. .....||+|++|+++...++..-.+         
T Consensus       352 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~---------  421 (490)
T PRK10938        352 STSVRNVILSGFFDSI-GIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPT---------  421 (490)
T ss_pred             CCcHHHHHHhcccccc-ccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCC---------
Confidence            0011111110 00000 000011 123456677888888864 44 4557899999999987665543221         


Q ss_pred             HHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        166 REKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                  -+..+|+....++.+.+.+.+.|++..
T Consensus       422 ------------lllLDEPt~gLD~~~~~~l~~~L~~l~  448 (490)
T PRK10938        422 ------------LLILDEPLQGLDPLNRQLVRRFVDVLI  448 (490)
T ss_pred             ------------EEEEcCccccCCHHHHHHHHHHHHHHH
Confidence                        244667777778888888888887763

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.43  E-value=7.2e-08  Score=94.74  Aligned_cols=160  Identities=13%  Similarity=0.094  Sum_probs=84.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...  .+.+.+++.++...    ...   ..+..  ...+.++...... 
T Consensus        23 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~----~~~---~~~~~--~i~~v~q~~~~~~~   93 (501)
T PRK11288         23 ISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFA----STT---AALAA--GVAIIYQELHLVPE   93 (501)
T ss_pred             eeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCC----CHH---HHHhC--CEEEEEechhccCC
Confidence            567889999999999999999999999999765  45666666554211    000   00000  0011111110000 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+..................+++..+++.+++.. +......||||++|+++...++..-.+             
T Consensus        94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~-------------  160 (501)
T PRK11288         94 MTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNAR-------------  160 (501)
T ss_pred             CCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCC-------------
Confidence            111121111000000000001123456667777777743 345567899999999987665544221             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                              .+..+|+....++.+.+.+.+.|.+.
T Consensus       161 --------lllLDEPt~~LD~~~~~~l~~~l~~~  186 (501)
T PRK11288        161 --------VIAFDEPTSSLSAREIEQLFRVIREL  186 (501)
T ss_pred             --------EEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence                    13344555555555555665555543

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.42  E-value=1e-07  Score=93.88  Aligned_cols=161  Identities=13%  Similarity=0.110  Sum_probs=92.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc---CC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG---KS   88 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~---~~   88 (299)
                      ++|.+.+++.++|.||||||||||+++|++.+.  .+.+.+++.++...    ....   .+..  ...+.++..   ..
T Consensus       282 isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~----~~~~---~~~~--~i~~v~q~~~~~~l  352 (510)
T PRK15439        282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINAL----STAQ---RLAR--GLVYLPEDRQSSGL  352 (510)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCC----CHHH---HHhC--CcEECCCChhhCCc
Confidence            567789999999999999999999999999765  45566666554321    1000   0000  001111110   00


Q ss_pred             -CchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-H-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         89 -SPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-Y-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRE  165 (299)
Q Consensus        89 -~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~  165 (299)
                       ......+.+.................++++..+++.+++. . +.+....||||++|++....++..-.+         
T Consensus       353 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~---------  423 (510)
T PRK15439        353 YLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQ---------  423 (510)
T ss_pred             cCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCC---------
Confidence             0011112211100000000001112234566778888885 3 455668899999999987765543111         


Q ss_pred             HHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        166 REKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                  -+..+|+....++.+.+.+.+.|++.+
T Consensus       424 ------------lLlLDEPt~gLD~~~~~~l~~~l~~l~  450 (510)
T PRK15439        424 ------------LLIVDEPTRGVDVSARNDIYQLIRSIA  450 (510)
T ss_pred             ------------EEEECCCCcCcChhHHHHHHHHHHHHH
Confidence                        245777888888999999999988763

>PRK13409 putative ATPase RIL; Provisional

Probab=98.41  E-value=4.3e-07  Score=90.89  Aligned_cols=125  Identities=20%  Similarity=0.243  Sum_probs=66.3

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchh----hhhccccccHHHHHHHHHHHHHH--HHh--hhhcCC
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE----LLTMWFGESEANVRDIFDKVTME--NFR--YAMGKS   88 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~----l~~~~~g~~~~~i~~~f~~a~~~--~~~--~~~~~~   88 (299)
                      .+.+|+.++|+||||+|||||+|+|++.+.+....|....    +...+.|.   .+...+......  .+.  .+....
T Consensus        95 ~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~---~l~~~~~~~~~~~~~~~~~~q~~~~  171 (590)
T PRK13409         95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGT---ELQNYFKKLYNGEIKVVHKPQYVDL  171 (590)
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCCh---HHHHHHHHHhccCcceeecccchhh
Confidence            3578899999999999999999999998876655553211    11111111   111112110000  000  000000


Q ss_pred             CchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHH
Q psy13773         89 SPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKL  152 (299)
Q Consensus        89 ~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~  152 (299)
                      .+.    .+   .......+. ..+...++..+++.+++..+ .+....||||++|++...+++.
T Consensus       172 ~p~----~~---~~tv~e~l~-~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~  228 (590)
T PRK13409        172 IPK----VF---KGKVRELLK-KVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALL  228 (590)
T ss_pred             hhh----hh---cchHHHHHH-hhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence            000    00   000000000 12334566778888888554 5566899999999998876554

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.41  E-value=1.3e-07  Score=92.96  Aligned_cols=161  Identities=9%  Similarity=0.119  Sum_probs=93.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc---CC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG---KS   88 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~---~~   88 (299)
                      ++|.+.+++.++|+||||||||||+++|++...+  +.+.+++.++....   ....++.      ...+.++..   ..
T Consensus       271 vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~---~~~~~~~------~i~~v~q~~~~~~~  341 (501)
T PRK10762        271 VSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRS---PQDGLAN------GIVYISEDRKRDGL  341 (501)
T ss_pred             ceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCC---HHHHHHC------CCEEecCccccCCC
Confidence            5677899999999999999999999999998754  55667665543210   0000100      001112111   00


Q ss_pred             -CchhhhHHHhhc-CccchhhcC--CCccHHHHHhhhcccCCHH--HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         89 -SPSALRETIVEV-PNITWEDIG--GLEGVKRELQELVQDVDLN--YIAKVTNGFSGADLTEICQRACKLAIRQSIETEI  162 (299)
Q Consensus        89 -~~~~~~~~l~~l-~~~l~~~~~--r~p~~~~R~~~l~~~v~l~--~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~  162 (299)
                       ......+.+... .........  ......+++..+++.+++.  ...+....||||++|++....++..-.       
T Consensus       342 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p-------  414 (501)
T PRK10762        342 VLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRP-------  414 (501)
T ss_pred             cCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCC-------
Confidence             111111221100 000000000  0112234566777888883  345566889999999998776554311       


Q ss_pred             HHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        163 RREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                    ..+..+|+....++.+.+.+.+.|++++
T Consensus       415 --------------~lllLDEPt~~LD~~~~~~l~~~l~~~~  442 (501)
T PRK10762        415 --------------KVLILDEPTRGVDVGAKKEIYQLINQFK  442 (501)
T ss_pred             --------------CEEEEcCCCCCCCHhHHHHHHHHHHHHH
Confidence                          1355777888888999999999998874

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.41  E-value=2.8e-07  Score=82.95  Aligned_cols=157  Identities=13%  Similarity=0.186  Sum_probs=84.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC-------CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA-------NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG   86 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~-------~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~   86 (299)
                      ++|.+.+++.++|.|+||+|||||+++|++...+       +.+.+++.++....  .....++.      ...+.++..
T Consensus        26 is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~--~~~~~~~~------~i~~~~q~~   97 (261)
T PRK14258         26 VSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERR--VNLNRLRR------QVSMVHPKP   97 (261)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccc--cchHHhhc------cEEEEecCC
Confidence            5678899999999999999999999999998653       34455544331100  00000110      001111111


Q ss_pred             CCCchhhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCH----H-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         87 KSSPSALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDL----N-YIAKVTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        87 ~~~~~~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l----~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      ..-.....+.+... ...   ....+  +...++..+++.+++    . .+......||+|+.++++...++..-.+   
T Consensus        98 ~l~~~tv~enl~~~-~~~---~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~---  170 (261)
T PRK14258         98 NLFPMSVYDNVAYG-VKI---VGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPK---  170 (261)
T ss_pred             ccCcccHHHHHHHH-HHh---cCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCC---
Confidence            11011111111100 000   00011  123345555555554    2 2344557899999999887665543111   


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                        -+..+|+....++.+.+.|.+.|.+.
T Consensus       171 ------------------vllLDEP~~~LD~~~~~~l~~~l~~l  196 (261)
T PRK14258        171 ------------------VLLMDEPCFGLDPIASMKVESLIQSL  196 (261)
T ss_pred             ------------------EEEEeCCCccCCHHHHHHHHHHHHHH
Confidence                              24466777777788888888888774

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.40  E-value=2.9e-07  Score=79.05  Aligned_cols=44  Identities=25%  Similarity=0.321  Sum_probs=35.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh----cCCeecccchhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPEL   57 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l----~~~~i~i~~~~l   57 (299)
                      ++|.+.+++.++|.||||+|||||+++|++..    ..+.+.+++.++
T Consensus        26 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~   73 (192)
T cd03232          26 ISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL   73 (192)
T ss_pred             cEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence            45778899999999999999999999999853    345566665443

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=4.3e-07  Score=88.38  Aligned_cols=151  Identities=15%  Similarity=0.178  Sum_probs=85.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      .++.+++++.+.|+|+||||||||++.|++.+.  .+.+.+++.++.+..       ...+++..   ...++....-..
T Consensus       340 l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~-------~~~~~k~i---~~v~Q~p~lf~g  409 (559)
T COG4988         340 LNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLS-------PEAWRKQI---SWVSQNPYLFAG  409 (559)
T ss_pred             ceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccC-------HHHHHhHe---eeeCCCCccccc
Confidence            467789999999999999999999999999876  466777776664431       11122211   111111111111


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH----------H-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL----------N-YIAKVTNGFSGADLTEICQRACKLAIRQSIET  160 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l----------~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~  160 (299)
                      +.++.+.-         .+....++.+..+++.+.+          + .+...-.++||||.|||....++..-++    
T Consensus       410 TireNi~l---------~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~----  476 (559)
T COG4988         410 TIRENILL---------ARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS----  476 (559)
T ss_pred             cHHHHhhc---------cCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCC----
Confidence            22222210         1111122333333333333          2 2445667899999999876554432111    


Q ss_pred             HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                       -+..+|+....+.=|.+.+.++|.+..
T Consensus       477 -----------------l~llDEpTA~LD~etE~~i~~~l~~l~  503 (559)
T COG4988         477 -----------------LLLLDEPTAHLDAETEQIILQALQELA  503 (559)
T ss_pred             -----------------EEEecCCccCCCHhHHHHHHHHHHHHH
Confidence                             244666777777777777888777653

>PLN03130 ABC transporter C family member; Provisional

Probab=98.40  E-value=4.9e-07  Score=99.64  Aligned_cols=150  Identities=17%  Similarity=0.203  Sum_probs=88.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+++++.++|+|++|||||||+++|.+...  .+.|.||+.++...    ....+|..+      .+.++....-..
T Consensus      1258 is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i----~l~~LR~~I------siVpQdp~LF~G 1327 (1622)
T PLN03130       1258 LSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKF----GLMDLRKVL------GIIPQAPVLFSG 1327 (1622)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccC----CHHHHHhcc------EEECCCCccccc
Confidence            567889999999999999999999999999665  46788898887543    112222211      122221111112


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH------------HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN------------YIAKVTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~------------~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      +.++.+.-.         . +..++++...++..++.            .+......|||||+|++|.+.++..-.+   
T Consensus      1328 TIreNLd~~---------~-~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~--- 1394 (1622)
T PLN03130       1328 TVRFNLDPF---------N-EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSK--- 1394 (1622)
T ss_pred             cHHHHhCcC---------C-CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCC---
Confidence            222222100         0 01122222233333331            2333445799999999998665442111   


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                        -+..+|.....+.-|.+.+.++|++..
T Consensus      1395 ------------------ILILDEATSaLD~~Te~~Iq~~I~~~~ 1421 (1622)
T PLN03130       1395 ------------------ILVLDEATAAVDVRTDALIQKTIREEF 1421 (1622)
T ss_pred             ------------------EEEEECCCCCCCHHHHHHHHHHHHHHC
Confidence                              244667777888888888999988763

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=98.40  E-value=3.9e-07  Score=91.30  Aligned_cols=151  Identities=17%  Similarity=0.251  Sum_probs=84.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      .++.+++|+.++|.||+|+|||||++.|++...+  +.+.+++.++...    ....++..+      .+.++....-..
T Consensus       354 i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~----~~~~~~~~i------~~v~q~~~lf~~  423 (585)
T TIGR01192       354 VSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTV----TRESLRKSI------ATVFQDAGLFNR  423 (585)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhC----CHHHHHhhe------EEEccCCccCcc
Confidence            4567889999999999999999999999997764  5566776655332    111111110      111211111111


Q ss_pred             hhhHHHhhc-CccchhhcCCCccHHHHHhhhcccC-----------CHH-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEV-PNITWEDIGGLEGVKRELQELVQDV-----------DLN-YIAKVTNGFSGADLTEICQRACKLAIRQSI  158 (299)
Q Consensus        92 ~~~~~l~~l-~~~l~~~~~r~p~~~~R~~~l~~~v-----------~l~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~  158 (299)
                      +.++.+.-. +.        . + +++....++.+           +++ .+......+|||++|+++...++..-.+  
T Consensus       424 ti~~Ni~~~~~~--------~-~-~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~--  491 (585)
T TIGR01192       424 SIRENIRLGREG--------A-T-DEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAP--  491 (585)
T ss_pred             cHHHHHhcCCCC--------C-C-HHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC--
Confidence            222222110 00        0 0 11111111111           122 2334456799999999987654443111  


Q ss_pred             HHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773        159 ETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P  205 (299)
                                         .+..+|+....+.-+.+.+.++|.+..+
T Consensus       492 -------------------ililDEpts~LD~~~~~~i~~~l~~~~~  519 (585)
T TIGR01192       492 -------------------ILVLDEATSALDVETEARVKNAIDALRK  519 (585)
T ss_pred             -------------------EEEEECCccCCCHHHHHHHHHHHHHHhC
Confidence                               2446677788888888999999887743

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=98.39  E-value=2.1e-07  Score=103.24  Aligned_cols=154  Identities=15%  Similarity=0.159  Sum_probs=93.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      +++.+.+++.++|.||||+|||||+++|++...+  +.+.+++.++..        ....+.   +...++++...... 
T Consensus       949 lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~--------~~~~~r---~~IG~~pQ~~~L~~~ 1017 (2272)
T TIGR01257       949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET--------NLDAVR---QSLGMCPQHNILFHH 1017 (2272)
T ss_pred             eEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc--------hHHHHh---hcEEEEecCCcCCCC
Confidence            5677899999999999999999999999998754  556677665521        111111   11123333222111 


Q ss_pred             hhhhHHHhhcCccchhhcCCC--ccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVPNITWEDIGGL--EGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~--p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                      ....+.+.-. .    .+...  .+.++++..+++.+++... .++...||||++|+++...++..-.+           
T Consensus      1018 LTV~E~L~f~-~----~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~Pk----------- 1081 (2272)
T TIGR01257      1018 LTVAEHILFY-A----QLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAK----------- 1081 (2272)
T ss_pred             CCHHHHHHHH-H----HhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC-----------
Confidence            1222222110 0    01111  2334567788888998554 45668999999999988765554222           


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                .+..+|+....++.+.+.+.+.|++.+
T Consensus      1082 ----------VLLLDEPTSGLDp~sr~~l~~lL~~l~ 1108 (2272)
T TIGR01257      1082 ----------VVVLDEPTSGVDPYSRRSIWDLLLKYR 1108 (2272)
T ss_pred             ----------EEEEECCCcCCCHHHHHHHHHHHHHHh
Confidence                      244556666667777777777776664

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.39  E-value=7.4e-07  Score=79.45  Aligned_cols=153  Identities=16%  Similarity=0.129  Sum_probs=91.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.|+++..+++.|+||+||||++|+|.+.+-  .+.+.|.+.+-...    .+..++.+    .. .+....+-....
T Consensus        43 isf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~----~~~~~~~~----~~-v~gqk~ql~Wdl  113 (325)
T COG4586          43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRR----REEYLRSI----GL-VMGQKLQLWWDL  113 (325)
T ss_pred             eeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchh----HHHHHHHH----HH-Hhhhhheeeeec
Confidence            678899999999999999999999999999775  45666665543321    11111111    00 011100000000


Q ss_pred             hhh---HHHhhcCccchhhcCCCcc--HHHHHhhhcccCCHH-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALR---ETIVEVPNITWEDIGGLEG--VKRELQELVQDVDLN-YIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRE  165 (299)
Q Consensus        92 ~~~---~~l~~l~~~l~~~~~r~p~--~~~R~~~l~~~v~l~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~  165 (299)
                      ...   .++.        .+.+.|+  -++|...+.+-+|++ .|..+...+|-|+..++=..|++.---          
T Consensus       114 p~~ds~~v~~--------~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p----------  175 (325)
T COG4586         114 PALDSLEVLK--------LIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPP----------  175 (325)
T ss_pred             hhhhhHHHHH--------HHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCC----------
Confidence            000   1111        1122343  356777777778884 566777899999988865555332111          


Q ss_pred             HHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        166 REKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                 .-+..+|+....+++.++.+.+.+++..
T Consensus       176 -----------~VLfLDEpTvgLDV~aq~~ir~Flke~n  203 (325)
T COG4586         176 -----------KVLFLDEPTVGLDVNAQANIREFLKEYN  203 (325)
T ss_pred             -----------cEEEecCCccCcchhHHHHHHHHHHHHH
Confidence                       1244566777778888888888888764

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=98.39  E-value=2.9e-07  Score=93.20  Aligned_cols=161  Identities=12%  Similarity=0.148  Sum_probs=91.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|.|+||||||||+++|++...+  +.+.+++.++...    ....+..+...  ...+.++....-. 
T Consensus        27 vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~----~~~~~~~~~~~--~i~~v~q~~~l~~~  100 (648)
T PRK10535         27 ISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATL----DADALAQLRRE--HFGFIFQRYHLLSH  100 (648)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcC----CHHHHHHHHhc--cEEEEeCCcccCCC
Confidence            5677899999999999999999999999998754  5566776654332    11111111100  0012221111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+.. .. .... ....+.+++...+++.+++.. +......||+|++|++....++..-.              
T Consensus       101 ~tv~enl~~-~~-~~~~-~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P--------------  163 (648)
T PRK10535        101 LTAAQNVEV-PA-VYAG-LERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGG--------------  163 (648)
T ss_pred             CCHHHHHHH-HH-HHcC-CCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCC--------------
Confidence            111111111 00 0000 011233455667777788854 45566889999999988665444311              


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                             ..+..+|+....++.+.+.+.+.+++.+
T Consensus       164 -------~lLllDEP~~gLD~~s~~~l~~ll~~l~  191 (648)
T PRK10535        164 -------QVILADEPTGALDSHSGEEVMAILHQLR  191 (648)
T ss_pred             -------CEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence                   1244666777777788888888777653

>KOG0055|consensus

Probab=98.38  E-value=3.7e-07  Score=95.53  Aligned_cols=47  Identities=19%  Similarity=0.429  Sum_probs=40.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTM   60 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~   60 (299)
                      .+|.+++|+.++|+||+||||||+++.|.+...+  +.+.+|+.++...
T Consensus       372 ~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~  420 (1228)
T KOG0055|consen  372 VSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNL  420 (1228)
T ss_pred             eEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhc
Confidence            5677899999999999999999999999997764  6688898887654

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=98.38  E-value=4.7e-07  Score=81.58  Aligned_cols=57  Identities=25%  Similarity=0.519  Sum_probs=48.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHH
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVT   77 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~   77 (299)
                      ...++|+|||||||||+++++|..+.       ..++++++.++.+.+++++...++.+|..+.
T Consensus        42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~  105 (261)
T TIGR02881        42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKAL  105 (261)
T ss_pred             cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhcc
Confidence            45789999999999999999998642       3567889999999999998888888887654

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.38  E-value=2.3e-07  Score=78.70  Aligned_cols=44  Identities=27%  Similarity=0.497  Sum_probs=35.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPEL   57 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l   57 (299)
                      .+|.+.+++.++|.||||+|||||+++|++...+  +.+.+++.++
T Consensus        19 i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   64 (178)
T cd03229          19 VSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDL   64 (178)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc
Confidence            4677889999999999999999999999997764  4555665443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=98.38  E-value=2.3e-07  Score=84.66  Aligned_cols=70  Identities=23%  Similarity=0.442  Sum_probs=54.9

Q ss_pred             cChhhhhcCCCC---CCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHH
Q psy13773          8 EHPEKFLKFGMQ---PSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVT   77 (299)
Q Consensus         8 ~~p~~~~sl~i~---~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~   77 (299)
                      ..++.+..+++.   ++..++|+|||||||||++++++..+.       .+++++++.++...+.|.+...++.+|+.+.
T Consensus        42 ~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~  121 (284)
T TIGR02880        42 LVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAM  121 (284)
T ss_pred             HHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHcc
Confidence            345566666665   345899999999999999999998663       2578889999988888888778888887764

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.38  E-value=2.7e-07  Score=83.40  Aligned_cols=41  Identities=17%  Similarity=0.265  Sum_probs=34.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKG   54 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~   54 (299)
                      ++|.+.+++.++|.||||+|||||+++|++.+.+  +.+.+++
T Consensus        43 is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g   85 (264)
T PRK13546         43 ISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG   85 (264)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC
Confidence            6778899999999999999999999999998754  4444544

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=98.38  E-value=5.2e-07  Score=85.59  Aligned_cols=59  Identities=32%  Similarity=0.572  Sum_probs=51.1

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhh-cccc-ccHHHHHHHHHHHHH
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFG-ESEANVRDIFDKVTM   78 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~-~~~g-~~~~~i~~~f~~a~~   78 (299)
                      ++.+++|+||+|||||+++++||..++.+++.+++..+.. .|.| +.+..++.+|..+..
T Consensus        46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~  106 (441)
T TIGR00390        46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVK  106 (441)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999987764 6788 567888888887744

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PLN03140 ABC transporter G family member; Provisional

Probab=98.38  E-value=3.4e-07  Score=99.84  Aligned_cols=155  Identities=15%  Similarity=0.167  Sum_probs=89.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC----CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA----NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~----~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~   89 (299)
                      +++.+.+|+.++|.||||+|||||+++|++....    +.+.+++.++.       ..    .+..  ...++.+.....
T Consensus       899 vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~-------~~----~~~~--~igyv~Q~d~~~  965 (1470)
T PLN03140        899 VTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK-------QE----TFAR--ISGYCEQNDIHS  965 (1470)
T ss_pred             cEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCC-------hH----Hhhh--heEEEccccccC
Confidence            4667889999999999999999999999997642    33444443321       00    1111  112222221111


Q ss_pred             c-hhhhHHHhhcCc-cchhhcCCCccHHHHHhhhcccCCHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 P-SALRETIVEVPN-ITWEDIGGLEGVKRELQELVQDVDLNYIAKVT------NGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        90 ~-~~~~~~l~~l~~-~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~t------~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      . ...++.+.-... .+... ....+..++++.+++.+++..++...      .++|||++|++....++.+-.+     
T Consensus       966 ~~lTV~E~L~~~a~lr~~~~-~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~----- 1039 (1470)
T PLN03140        966 PQVTVRESLIYSAFLRLPKE-VSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPS----- 1039 (1470)
T ss_pred             CCCcHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCC-----
Confidence            1 122222211000 00000 00012334677888888887766543      5899999999987765554221     


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                      -+..+|+....+..+...+.+.|++.
T Consensus      1040 ----------------lL~LDEPTsgLD~~~a~~v~~~L~~l 1065 (1470)
T PLN03140       1040 ----------------IIFMDEPTSGLDARAAAIVMRTVRNT 1065 (1470)
T ss_pred             ----------------EEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence                            24466777777888888888888765

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.38  E-value=2.5e-07  Score=91.27  Aligned_cols=161  Identities=14%  Similarity=0.107  Sum_probs=89.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceeccc-chhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVK-GPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~-~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~   90 (299)
                      ++|.+.+++.++|.||||||||||+++|++.+.+  +.+.++ +.+..... ......... +.  ....+.++......
T Consensus       303 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~-~~~~~~~~~-~~--~~i~~v~q~~~l~~  378 (520)
T TIGR03269       303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMT-KPGPDGRGR-AK--RYIGILHQEYDLYP  378 (520)
T ss_pred             EEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccccc-ccchhhHHH-Hh--hhEEEEccCcccCC
Confidence            5677899999999999999999999999998754  445553 22110000 000000000 00  00112221111111


Q ss_pred             -hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH------HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 -SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN------YIAKVTNGFSGADLTEICQRACKLAIRQSIETEIR  163 (299)
Q Consensus        91 -~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~------~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~  163 (299)
                       ....+.+... ..+.   .......+++..+++.+++.      .+.+....||||++|+++...++..-.+       
T Consensus       379 ~~tv~e~l~~~-~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~-------  447 (520)
T TIGR03269       379 HRTVLDNLTEA-IGLE---LPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPR-------  447 (520)
T ss_pred             CCcHHHHHHHH-HHcC---CCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCC-------
Confidence             1122222110 0000   00111234566777777774      3456678999999999987665543111       


Q ss_pred             HHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        164 REREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                    .+..+|+....++.+.+.|.+.|.+.
T Consensus       448 --------------lLllDEPt~~LD~~~~~~l~~~l~~l  473 (520)
T TIGR03269       448 --------------IVILDEPTGTMDPITKVDVTHSILKA  473 (520)
T ss_pred             --------------EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence                          24466777788888888898888765

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.37  E-value=3.9e-07  Score=89.04  Aligned_cols=144  Identities=15%  Similarity=0.127  Sum_probs=81.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...+  +.+.+++....   ....     .        .+      ....
T Consensus        43 VSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~---i~~~-----~--------~l------~~~l  100 (549)
T PRK13545         43 ISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL---IAIS-----S--------GL------NGQL  100 (549)
T ss_pred             eEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeee---EEec-----c--------cc------CCCC
Confidence            5677899999999999999999999999998754  45555543210   0000     0        00      0000


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLA  170 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~  170 (299)
                      ...+.+.. ......  .......+++..+++.+++.. +......||||++++++...++..-.+              
T Consensus       101 TV~EnL~l-~~~~~~--~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~--------------  163 (549)
T PRK13545        101 TGIENIEL-KGLMMG--LTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPD--------------  163 (549)
T ss_pred             cHHHHHHh-hhhhcC--CCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCC--------------
Confidence            11111110 000000  001122344556677777754 445568899999999887665544221              


Q ss_pred             CCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        171 GNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                             .+..+|+....++.+.+.|.+.|.++
T Consensus       164 -------LLLLDEPTsgLD~~sr~~LlelL~el  189 (549)
T PRK13545        164 -------ILVIDEALSVGDQTFTKKCLDKMNEF  189 (549)
T ss_pred             -------EEEEECCcccCCHHHHHHHHHHHHHH
Confidence                   13345555556666666666666554

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=98.37  E-value=2.3e-07  Score=92.17  Aligned_cols=45  Identities=20%  Similarity=0.327  Sum_probs=37.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELL   58 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~   58 (299)
                      .++.+++++.++|.||+|||||||++.|++...+  +.+.+++.++.
T Consensus       342 i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~  388 (547)
T PRK10522        342 INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVT  388 (547)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECC
Confidence            5677899999999999999999999999997654  56777776654

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.37  E-value=4.1e-07  Score=77.20  Aligned_cols=30  Identities=23%  Similarity=0.253  Sum_probs=27.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHH
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      ++|.+.+++.+.|.||||||||||+|++..
T Consensus        14 isl~i~~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          14 LDVSIPLNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence            577889999999999999999999999864

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.37  E-value=1.4e-07  Score=92.79  Aligned_cols=161  Identities=7%  Similarity=0.046  Sum_probs=90.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc----C
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG----K   87 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~----~   87 (299)
                      ++|.+.+++.++|.||||||||||+++|++...+  +.+.+++.++....   ....++.      ...+.++..    -
T Consensus       272 isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~---~~~~~~~------~i~~~~q~~~~~~~  342 (501)
T PRK11288        272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRS---PRDAIRA------GIMLCPEDRKAEGI  342 (501)
T ss_pred             eeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCC---HHHHHhC------CCEEcCcCHhhCCC
Confidence            4677899999999999999999999999997653  55666655442110   0000100      001111110    0


Q ss_pred             CCchhhhHHHhhcCccc-hh-h-cCCCccHHHHHhhhcccCCHH-H-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         88 SSPSALRETIVEVPNIT-WE-D-IGGLEGVKRELQELVQDVDLN-Y-IAKVTNGFSGADLTEICQRACKLAIRQSIETEI  162 (299)
Q Consensus        88 ~~~~~~~~~l~~l~~~l-~~-~-~~r~p~~~~R~~~l~~~v~l~-~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~  162 (299)
                      .......+.+....... .. . +......++++..++..+++. . .......||||++|+++...++..-.       
T Consensus       343 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p-------  415 (501)
T PRK11288        343 IPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDM-------  415 (501)
T ss_pred             cCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCC-------
Confidence            00011112111000000 00 0 000112234566778888883 3 45566899999999998776554311       


Q ss_pred             HHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        163 RREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                    .-+..+|+....++.+.+.+.+.|.+..
T Consensus       416 --------------~lllLDEPt~~LD~~~~~~l~~~l~~l~  443 (501)
T PRK11288        416 --------------KVILLDEPTRGIDVGAKHEIYNVIYELA  443 (501)
T ss_pred             --------------CEEEEcCCCCCCCHhHHHHHHHHHHHHH
Confidence                          1245677778888888999998887764

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=98.37  E-value=3.5e-07  Score=77.19  Aligned_cols=44  Identities=27%  Similarity=0.383  Sum_probs=35.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPEL   57 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l   57 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...+  +.+.+++.++
T Consensus        19 ~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~   64 (173)
T cd03230          19 ISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDI   64 (173)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEc
Confidence            5677889999999999999999999999997653  4555665443

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.36  E-value=8.9e-07  Score=87.11  Aligned_cols=134  Identities=12%  Similarity=0.111  Sum_probs=71.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchh--hhh----c-cccccHHHHHHHHHHH-------HHH
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE--LLT----M-WFGESEANVRDIFDKV-------TME   79 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~--l~~----~-~~g~~~~~i~~~f~~a-------~~~   79 (299)
                      +++.+.++..++|+|+||+|||||+|+|++...+....|....  -+.    . ........+..++...       ...
T Consensus        22 ~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~  101 (530)
T COG0488          22 VSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAEL  101 (530)
T ss_pred             CcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHH
Confidence            5677899999999999999999999999998865444332211  000    0 0000001111111110       000


Q ss_pred             -HHhhhhcCCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy13773         80 -NFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLTEICQRACKLA  153 (299)
Q Consensus        80 -~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a  153 (299)
                       ......... .......+......++     .-+.+.|+..++..+++....+....||||+..++..+.++.+
T Consensus       102 ~~~~~~~~~~-~~~~~~~l~~~~~~~~-----~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~  170 (530)
T COG0488         102 EEAYALLADP-DDELLAELEALLEELD-----GWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLE  170 (530)
T ss_pred             HHHHHhcccc-hhHHHHHHHHHHHhhc-----ccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhc
Confidence             000000010 0000111111111111     1345678888888888865566678999999999887766554

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=98.36  E-value=7.7e-07  Score=79.99  Aligned_cols=154  Identities=18%  Similarity=0.238  Sum_probs=79.4

Q ss_pred             CCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchh----hhhccccccHHHHHHHHHHHHHH----HHhhhhcCCC
Q psy13773         18 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE----LLTMWFGESEANVRDIFDKVTME----NFRYAMGKSS   89 (299)
Q Consensus        18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~----l~~~~~g~~~~~i~~~f~~a~~~----~~~~~~~~~~   89 (299)
                      +.+++.++|.||||+|||||+++|++...+....|....    +...+.+..   +...+......    .+..+.....
T Consensus        23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~i~~~~~~~~~~   99 (255)
T cd03236          23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSE---LQNYFTKLLEGDVKVIVKPQYVDLI   99 (255)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCch---hhhhhHHhhhcccceeeecchhccC
Confidence            678999999999999999999999998875544442000    000011111   11111100000    0000000000


Q ss_pred             chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                      .......+..   .+     +......+...+++.+++.. +......||+|+++++....++..-.             
T Consensus       100 ~~~~~~~i~~---~l-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p-------------  158 (255)
T cd03236         100 PKAVKGKVGE---LL-----KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDA-------------  158 (255)
T ss_pred             chHHHHHHHH---Hh-----chhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCC-------------
Confidence            0011111111   00     11223345567777777744 44566789999999988665443211             


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                              .-+..+|+.....+-+...|.+.+++.
T Consensus       159 --------~illlDEPts~LD~~~~~~l~~~l~~l  185 (255)
T cd03236         159 --------DFYFFDEPSSYLDIKQRLNAARLIREL  185 (255)
T ss_pred             --------CEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence                    124455666666666666677777655

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=98.36  E-value=4.3e-07  Score=78.12  Aligned_cols=44  Identities=25%  Similarity=0.388  Sum_probs=35.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh--cC--Ceecccchhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC--QA--NFISVKGPEL   57 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l--~~--~~i~i~~~~l   57 (299)
                      .+|.+.+++.++|.||||+|||||+++|++..  .+  +.+.+++.++
T Consensus        28 ~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~   75 (194)
T cd03213          28 VSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL   75 (194)
T ss_pred             ceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeC
Confidence            45678999999999999999999999999987  53  4556665543

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.35  E-value=4.5e-07  Score=78.04  Aligned_cols=184  Identities=16%  Similarity=0.212  Sum_probs=117.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK   87 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~   87 (299)
                      +++.+..++.-.|+|.+|+|||.++++|++...      +.-+.++..++......+    .+.+........|.....-
T Consensus        26 v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~----RRk~ig~~isMIFQeP~sC  101 (330)
T COG4170          26 VSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRE----RRKLVGHNVSMIFQEPQSC  101 (330)
T ss_pred             eeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHH----hhhhhccchhhhhcCchhh
Confidence            466778899999999999999999999999664      334455555665543322    2222222222122222222


Q ss_pred             CCchh--hhHHHhhcCccchhhc--CCCccHHHHHhhhcccCCHH----HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         88 SSPSA--LRETIVEVPNITWEDI--GGLEGVKRELQELVQDVDLN----YIAKVTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        88 ~~~~~--~~~~l~~l~~~l~~~~--~r~p~~~~R~~~l~~~v~l~----~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      .+++.  -++.+..+|.......  .+.--.+.|+.+++..|+++    -.+.++..++-|+-|.++.+.+.++..|.  
T Consensus       102 LDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrL--  179 (330)
T COG4170         102 LDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRL--  179 (330)
T ss_pred             cChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCce--
Confidence            22222  2255555554332211  12344577888899999883    35677788999999998887766655543  


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccCC------CCHHHHHHHHHHHHHH
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARRS------VNDADIRKYEMFAQTL  222 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~Ps------Vsw~DIggL~~vk~~i  222 (299)
                                         +..+++.....++|...+..-|.++..+      ..-+|+..+.+|.+.|
T Consensus       180 -------------------LIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i  229 (330)
T COG4170         180 -------------------LIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKI  229 (330)
T ss_pred             -------------------EeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhhe
Confidence                               3356677777889999988888877543      4457888888888765

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.35  E-value=3.3e-07  Score=90.68  Aligned_cols=144  Identities=10%  Similarity=0.120  Sum_probs=86.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.++|.||||||||||+++|++.+.+  +.+.+++..-...           +++.... .+      ....
T Consensus       338 is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~-----------~~q~~~~-~~------~~~~  399 (530)
T PRK15064        338 LNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGY-----------YAQDHAY-DF------ENDL  399 (530)
T ss_pred             cEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEE-----------Ecccccc-cC------CCCC
Confidence            5678899999999999999999999999997654  3344443111110           0000000 00      0000


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-H-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-N-YIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ...+.+...        .......+++..+++.+++ . .+......||||++++++...++..-.+             
T Consensus       400 t~~~~~~~~--------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~-------------  458 (530)
T PRK15064        400 TLFDWMSQW--------RQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPN-------------  458 (530)
T ss_pred             cHHHHHHHh--------ccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCC-------------
Confidence            111111100        0011224556677777777 3 4456678999999999987665443111             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                              .+..+|+....++.+.+.+.+.|+++.
T Consensus       459 --------lllLDEPt~~LD~~~~~~l~~~l~~~~  485 (530)
T PRK15064        459 --------VLVMDEPTNHMDMESIESLNMALEKYE  485 (530)
T ss_pred             --------EEEEcCCCCCCCHHHHHHHHHHHHHCC
Confidence                    244667777888888888888888763

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=98.35  E-value=3.6e-07  Score=99.55  Aligned_cols=156  Identities=13%  Similarity=0.111  Sum_probs=91.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-----CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS   88 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-----~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~   88 (299)
                      +++.+.+++.++|.||||+|||||+++|++...     .+.+.+++.++..        .++.      ...+..+....
T Consensus       782 vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~--------~~~~------~i~yv~Q~~~~  847 (1394)
T TIGR00956       782 VDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS--------SFQR------SIGYVQQQDLH  847 (1394)
T ss_pred             CEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh--------hhhc------ceeeecccccC
Confidence            456678999999999999999999999999864     2556677655421        0110      01122221111


Q ss_pred             -CchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHHhc-C----CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         89 -SPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVT-N----GFSGADLTEICQRACKLAIRQSIETEI  162 (299)
Q Consensus        89 -~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~t-~----glSggDl~~Lv~~A~~~a~~r~~~~~~  162 (299)
                       .....++.+.-......+.-....+..++++.+++.+++..+++.. .    ++|||++|+++...++..-.+.     
T Consensus       848 ~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~-----  922 (1394)
T TIGR00956       848 LPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKL-----  922 (1394)
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCe-----
Confidence             1112223322100000000000112345677888888887665443 2    7999999999977655442210     


Q ss_pred             HHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        163 RREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                     -+..+|+....+..+...+.+.|++.
T Consensus       923 ---------------iLlLDEPTsgLD~~~~~~i~~~L~~l  948 (1394)
T TIGR00956       923 ---------------LLFLDEPTSGLDSQTAWSICKLMRKL  948 (1394)
T ss_pred             ---------------EEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence                           13466777777788888888888765

>PLN03232 ABC transporter C family member; Provisional

Probab=98.35  E-value=4.3e-07  Score=99.70  Aligned_cols=150  Identities=15%  Similarity=0.168  Sum_probs=88.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      +++.+++|+.++|+|++|||||||+++|.+...  .+.|.||+.++...    ....+|..+      .+.++....-..
T Consensus      1255 isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i----~~~~lR~~i------~iVpQdp~LF~g 1324 (1495)
T PLN03232       1255 LSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKF----GLTDLRRVL------SIIPQSPVLFSG 1324 (1495)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhC----CHHHHHhhc------EEECCCCeeeCc
Confidence            567789999999999999999999999999765  46788898877543    112222211      222221111112


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH------------HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN------------YIAKVTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~------------~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      +.++.+.-.        .  .-.++++...++.+++.            .+...-..|||||+|++|.+.++..-.+   
T Consensus      1325 TIr~NL~~~--------~--~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~--- 1391 (1495)
T PLN03232       1325 TVRFNIDPF--------S--EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSK--- 1391 (1495)
T ss_pred             cHHHHcCCC--------C--CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCC---
Confidence            222222100        0  00112222333333332            2233345799999999997655442111   


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                        -+..+|.....+.-|.+.+.++|++..
T Consensus      1392 ------------------ILILDEATSaLD~~Te~~Iq~~L~~~~ 1418 (1495)
T PLN03232       1392 ------------------ILVLDEATASVDVRTDSLIQRTIREEF 1418 (1495)
T ss_pred             ------------------EEEEECCcccCCHHHHHHHHHHHHHHc
Confidence                              244667777888888888999988764

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.34  E-value=5.9e-07  Score=73.66  Aligned_cols=35  Identities=29%  Similarity=0.507  Sum_probs=31.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN   48 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~   48 (299)
                      .+|.+.+++.++|.||||+|||||+++|++...+.
T Consensus        19 ~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~   53 (144)
T cd03221          19 ISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD   53 (144)
T ss_pred             eEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence            45778999999999999999999999999987643

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PLN03073 ABC transporter F family; Provisional

Probab=98.34  E-value=1.3e-06  Score=89.34  Aligned_cols=71  Identities=10%  Similarity=0.043  Sum_probs=47.5

Q ss_pred             cHHHHHhhhcccCCHH-H-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCccc
Q psy13773        113 GVKRELQELVQDVDLN-Y-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPE  190 (299)
Q Consensus       113 ~~~~R~~~l~~~v~l~-~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (299)
                      ..+.|+..++..+++. . +......||||+.+++...+++..-.+                     .+..+|+....++
T Consensus       319 ~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~---------------------lLlLDEPt~~LD~  377 (718)
T PLN03073        319 TAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPD---------------------LLLLDEPTNHLDL  377 (718)
T ss_pred             hHHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCC---------------------EEEEECCCCCCCH
Confidence            4566777788888883 3 445668999999999987765543221                     2445566666666


Q ss_pred             ccHHHHHHHHHhcc
Q psy13773        191 ITRAHFEEAMRFAR  204 (299)
Q Consensus       191 it~~Df~~AL~~~~  204 (299)
                      .+.+.|.+.|+++.
T Consensus       378 ~~~~~l~~~L~~~~  391 (718)
T PLN03073        378 HAVLWLETYLLKWP  391 (718)
T ss_pred             HHHHHHHHHHHHcC
Confidence            66777777766653

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.34  E-value=5.4e-07  Score=75.63  Aligned_cols=35  Identities=34%  Similarity=0.581  Sum_probs=31.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN   48 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~   48 (299)
                      ++|.+.+++.++|.||||||||||+++|++.+.+.
T Consensus        20 i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~   54 (166)
T cd03223          20 LSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG   54 (166)
T ss_pred             CeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            56778899999999999999999999999987643

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK13409 putative ATPase RIL; Provisional

Probab=98.34  E-value=3.3e-07  Score=91.75  Aligned_cols=140  Identities=17%  Similarity=0.188  Sum_probs=81.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC-Cchh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS-SPSA   92 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~-~~~~   92 (299)
                      .++.+.+++.++|.||||+|||||+|+|++.+.+....|... +   .++                 +.++.... ....
T Consensus       358 ~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~---~i~-----------------y~~Q~~~~~~~~t  416 (590)
T PRK13409        358 EGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-L---KIS-----------------YKPQYIKPDYDGT  416 (590)
T ss_pred             cceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-e---eEE-----------------EecccccCCCCCc
Confidence            356678999999999999999999999999876543332210 1   000                 00000000 0011


Q ss_pred             hhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy13773         93 LRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAG  171 (299)
Q Consensus        93 ~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~  171 (299)
                      ..+.+....   ..     .....+...+++.+++..+ .+....||||++|+++...++..-.+               
T Consensus       417 v~e~l~~~~---~~-----~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~---------------  473 (590)
T PRK13409        417 VEDLLRSIT---DD-----LGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDAD---------------  473 (590)
T ss_pred             HHHHHHHHh---hh-----cChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCC---------------
Confidence            112211100   00     0112244566777777554 45558899999999987765543111               


Q ss_pred             CcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        172 NPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                            .+..+|+....++.+...+.+.|+++
T Consensus       474 ------llLLDEPt~~LD~~~~~~l~~~l~~l  499 (590)
T PRK13409        474 ------LYLLDEPSAHLDVEQRLAVAKAIRRI  499 (590)
T ss_pred             ------EEEEeCCccCCCHHHHHHHHHHHHHH
Confidence                  24466677777777888888888776

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=98.34  E-value=2e-06  Score=84.88  Aligned_cols=146  Identities=20%  Similarity=0.201  Sum_probs=84.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCchhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSAL   93 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~~~   93 (299)
                      .++.+++|+.++|.|+||||||||+|+||+.-..+...|....=..                   ..|.+++.......+
T Consensus       412 l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~-------------------~lflpQ~PY~p~GtL  472 (604)
T COG4178         412 LNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSA-------------------LLFLPQRPYLPQGTL  472 (604)
T ss_pred             ceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCc-------------------eEEecCCCCCCCccH
Confidence            3466789999999999999999999999997765555544220000                   023333333333333


Q ss_pred             hHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         94 RETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTN-------GFSGADLTEICQRACKLAIRQSIETEIRRER  166 (299)
Q Consensus        94 ~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~t~-------glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~  166 (299)
                      ++.+ .+|.....      -.++.+..++..+++.+++.+-+       -+|+|++|+|+-+..+.-             
T Consensus       473 re~l-~YP~~~~~------~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~-------------  532 (604)
T COG4178         473 REAL-CYPNAAPD------FSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLH-------------  532 (604)
T ss_pred             HHHH-hCCCCCCC------CChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHc-------------
Confidence            3332 22222110      11334456667777766665543       499999999875432211             


Q ss_pred             HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccCC
Q psy13773        167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARRS  206 (299)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~Ps  206 (299)
                              ...++-.+|.....++=+..-+..++++--|.
T Consensus       533 --------kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~  564 (604)
T COG4178         533 --------KPKWVFLDEATSALDEETEDRLYQLLKEELPD  564 (604)
T ss_pred             --------CCCEEEEecchhccChHHHHHHHHHHHhhCCC
Confidence                    11234455555555555666677777775453

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.34  E-value=8e-07  Score=89.89  Aligned_cols=143  Identities=15%  Similarity=0.250  Sum_probs=86.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+|+.++|+||||||||||+++|++...+  +.+.+....-+. |+....  ..         .+.      ...
T Consensus       331 isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig-y~~Q~~--~~---------~l~------~~~  392 (638)
T PRK10636        331 IKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLG-YFAQHQ--LE---------FLR------ADE  392 (638)
T ss_pred             ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEE-EecCcc--hh---------hCC------ccc
Confidence            4667899999999999999999999999998754  344443110001 110000  00         000      000


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH--HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN--YIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~--~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      .....+..+         .......++..++..+++.  .+.+....||||+.++|+...++..-.              
T Consensus       393 ~~~~~~~~~---------~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p--------------  449 (638)
T PRK10636        393 SPLQHLARL---------APQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRP--------------  449 (638)
T ss_pred             hHHHHHHHh---------CchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCC--------------
Confidence            001111100         0012234566777778873  355666889999999998765443211              


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                             ..+..+++....++.+.+.+.++|.++.
T Consensus       450 -------~lLlLDEPt~~LD~~~~~~l~~~L~~~~  477 (638)
T PRK10636        450 -------NLLLLDEPTNHLDLDMRQALTEALIDFE  477 (638)
T ss_pred             -------CEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence                   1355777888888899999999998874

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.34  E-value=2.5e-06  Score=70.70  Aligned_cols=133  Identities=17%  Similarity=0.270  Sum_probs=75.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh--cCCeecccchhh-hhccccccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC--QANFISVKGPEL-LTMWFGESEANVRDIFDKVTMENFRYAMGKSSP   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l--~~~~i~i~~~~l-~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~   90 (299)
                      ++|....++.+.|.||+|+|||+|+|.|.-.-  ..+...|-+..+ .+..  .+++.++.+.+.... .|  +.-...+
T Consensus        21 i~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~--~~~k~i~~lr~~vgm-vf--qqy~lwp   95 (242)
T COG4161          21 ITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKT--PSDKAIRDLRRNVGM-VF--QQYNLWP   95 (242)
T ss_pred             eeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccC--ccHHHHHHHHHhhhh-hh--hhhccCc
Confidence            45666889999999999999999999988643  234444432221 1111  133555554443221 11  1111111


Q ss_pred             -hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHHhc-CCCCHHHHHHHHHHHHHHH
Q psy13773         91 -SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVT-NGFSGADLTEICQRACKLA  153 (299)
Q Consensus        91 -~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~t-~glSggDl~~Lv~~A~~~a  153 (299)
                       -...+.+.+-|-....  ........|..++++.+.+...|.+- -.+|||+.|+++...+++.
T Consensus        96 hltv~enlieap~kv~g--l~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmm  158 (242)
T COG4161          96 HLTVQENLIEAPCRVLG--LSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMM  158 (242)
T ss_pred             hhHHHHHHHhhhHHHhC--CCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhc
Confidence             1222333332221111  11234456777899999998887655 5899999999887665543

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.33  E-value=6.5e-07  Score=88.07  Aligned_cols=144  Identities=18%  Similarity=0.238  Sum_probs=88.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeeccc-chhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCchh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVK-GPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSA   92 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~-~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~~   92 (299)
                      .+|.+.++..|.|+||||+|||||+|.|++.++.....|. +..+.-.|+.+....+   +               ....
T Consensus       341 ~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l---~---------------~~~t  402 (530)
T COG0488         341 LSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDEL---D---------------PDKT  402 (530)
T ss_pred             ceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhc---C---------------ccCc
Confidence            5677899999999999999999999999998875543332 2222222222211000   0               0001


Q ss_pred             hhHHHhhcCccchhhcCCCccH-HHHHhhhcccCCH--HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         93 LRETIVEVPNITWEDIGGLEGV-KRELQELVQDVDL--NYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        93 ~~~~l~~l~~~l~~~~~r~p~~-~~R~~~l~~~v~l--~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+..          ..|+. ++.+...+..+.+  +...+....||||+..+|.....+.. .              
T Consensus       403 ~~d~l~~----------~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~-~--------------  457 (530)
T COG0488         403 VLEELSE----------GFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQ-P--------------  457 (530)
T ss_pred             HHHHHHh----------hCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhcc-C--------------
Confidence            1111111          01221 3444456667777  44556668899999999886543322 1              


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhccCC
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARRS  206 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~Ps  206 (299)
                            ...+..+|++...+.-+.+-+++||..+..+
T Consensus       458 ------pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gt  488 (530)
T COG0488         458 ------PNLLLLDEPTNHLDIESLEALEEALLDFEGT  488 (530)
T ss_pred             ------CCEEEEcCCCccCCHHHHHHHHHHHHhCCCe
Confidence                  1135577788888888899999999999865

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.33  E-value=3.5e-07  Score=77.80  Aligned_cols=44  Identities=25%  Similarity=0.292  Sum_probs=36.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPEL   57 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l   57 (299)
                      +++.+.+++.++|.|+||+|||||+++|++...+  +.+.+++.++
T Consensus        19 vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   64 (182)
T cd03215          19 VSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPV   64 (182)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC
Confidence            5677899999999999999999999999998754  5566666544

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.32  E-value=1e-06  Score=89.02  Aligned_cols=41  Identities=22%  Similarity=0.302  Sum_probs=34.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKG   54 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~   54 (299)
                      ++|.+.+++.++|+||||||||||+|+|++...+  +.+.+++
T Consensus        22 is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~   64 (635)
T PRK11147         22 AELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ   64 (635)
T ss_pred             cEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCC
Confidence            5677899999999999999999999999998754  4444443

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=98.32  E-value=9.6e-07  Score=89.63  Aligned_cols=146  Identities=17%  Similarity=0.216  Sum_probs=80.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCC--eecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~--~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      +++.+++++.++|+||+|||||||+++|++.....  .+.++...-.                     .+.++.......
T Consensus       471 isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i---------------------~~v~Q~~~l~~~  529 (659)
T TIGR00954       471 LSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKL---------------------FYVPQRPYMTLG  529 (659)
T ss_pred             ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcE---------------------EEECCCCCCCCc
Confidence            45678899999999999999999999999976543  3333211000                     111111111111


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHHhc----------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVT----------NGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~t----------~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      ..++.+. ++..... ........+++..+++.+++.++..+.          ..||||++|++....++..-.+     
T Consensus       530 tv~eni~-~~~~~~~-~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~-----  602 (659)
T TIGR00954       530 TLRDQII-YPDSSED-MKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQ-----  602 (659)
T ss_pred             CHHHHHh-cCCChhh-hhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCC-----
Confidence            1112211 1100000 000001133445556666665544332          5699999999987665543221     


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                      .+..+|+....++.+.+.+.+++++.
T Consensus       603 ----------------illLDEpts~LD~~~~~~l~~~l~~~  628 (659)
T TIGR00954       603 ----------------FAILDECTSAVSVDVEGYMYRLCREF  628 (659)
T ss_pred             ----------------EEEEeCCccCCCHHHHHHHHHHHHHc
Confidence                            24466777777778888888888764

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=98.32  E-value=1.1e-06  Score=96.67  Aligned_cols=150  Identities=13%  Similarity=0.107  Sum_probs=88.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+++|+.++|+|++|||||||+++|.+...  .+.|.+|+.++...    ....+|..+      .+.++....-..
T Consensus      1305 is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i----~~~~LR~~i------~iVpQdp~LF~g 1374 (1522)
T TIGR00957      1305 INVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKI----GLHDLRFKI------TIIPQDPVLFSG 1374 (1522)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEcccc----CHHHHHhcC------eEECCCCcccCc
Confidence            567789999999999999999999999999765  47788998887554    122222211      122221111112


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH------------HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN------------YIAKVTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~------------~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      +.++.+.-..        ...  ++.+...++.+++.            .+...-..|||||+|++|...++..-.+   
T Consensus      1375 TIr~NLdp~~--------~~s--deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~--- 1441 (1522)
T TIGR00957      1375 SLRMNLDPFS--------QYS--DEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTK--- 1441 (1522)
T ss_pred             cHHHHcCccc--------CCC--HHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCC---
Confidence            2222221000        001  11122222222221            1233345699999999997765442111   


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                        -+..+|.....+.-|.+.+.++|++..
T Consensus      1442 ------------------ILiLDEaTSalD~~Te~~Iq~~l~~~~ 1468 (1522)
T TIGR00957      1442 ------------------ILVLDEATAAVDLETDNLIQSTIRTQF 1468 (1522)
T ss_pred             ------------------EEEEECCcccCCHHHHHHHHHHHHHHc
Confidence                              244667777888888888999998764

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.31  E-value=4.8e-07  Score=88.85  Aligned_cols=159  Identities=10%  Similarity=0.039  Sum_probs=89.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc---CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc---C
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG---K   87 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~---~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~---~   87 (299)
                      ++|.+.+++.++|.||||||||||+++|++...   .+.+.+++.++...   .....++.      ...+.++..   .
T Consensus       279 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~---~~~~~~~~------~i~~v~q~~~~~~  349 (500)
T TIGR02633       279 VSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIR---NPAQAIRA------GIAMVPEDRKRHG  349 (500)
T ss_pred             ceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCC---CHHHHHhC------CCEEcCcchhhCC
Confidence            467789999999999999999999999999865   35566666544211   00000000      001111110   0


Q ss_pred             C-CchhhhHHHhh-cCccchhhcCCCc--cHHHHHhhhcccCCHH--HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         88 S-SPSALRETIVE-VPNITWEDIGGLE--GVKRELQELVQDVDLN--YIAKVTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        88 ~-~~~~~~~~l~~-l~~~l~~~~~r~p--~~~~R~~~l~~~v~l~--~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      . ......+.+.. ....... .....  ..++++..+++.+++.  .+.+....||||++|++....++..-.+     
T Consensus       350 l~~~~tv~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~-----  423 (500)
T TIGR02633       350 IVPILGVGKNITLSVLKSFCF-KMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPR-----  423 (500)
T ss_pred             cCCCCCHHHHhcchhhhhhcc-CCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCC-----
Confidence            0 00111111110 0000000 00111  2234566778888884  2456668899999999987765543111     


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                      .+..+|+....++.+.+.+.+.|++.
T Consensus       424 ----------------lllLDEPt~~LD~~~~~~l~~~l~~l  449 (500)
T TIGR02633       424 ----------------VLILDEPTRGVDVGAKYEIYKLINQL  449 (500)
T ss_pred             ----------------EEEEcCCCCCcCHhHHHHHHHHHHHH
Confidence                            24466777777888888887777665

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PTZ00243 ABC transporter; Provisional

Probab=98.31  E-value=1.1e-06  Score=96.68  Aligned_cols=151  Identities=15%  Similarity=0.169  Sum_probs=89.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.|.+|+.++|+|++|+|||||+++|.+...  .+.|.||+.++...    ....+|..+      .+.++....-..
T Consensus      1329 vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i----~l~~LR~~I------~iVpQdp~LF~g 1398 (1560)
T PTZ00243       1329 VSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAY----GLRELRRQF------SMIPQDPVLFDG 1398 (1560)
T ss_pred             ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccC----CHHHHHhcc------eEECCCCccccc
Confidence            567789999999999999999999999999765  47788898887653    222233221      222222211122


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH------------HHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY------------IAKVTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~------------LA~~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      +.++.+.-.        ....  ++.+...++.+++.+            +...-..|||||+|++|...++..  +.  
T Consensus      1399 TIreNIdp~--------~~~s--deeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~--~~-- 1464 (1560)
T PTZ00243       1399 TVRQNVDPF--------LEAS--SAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLK--KG-- 1464 (1560)
T ss_pred             cHHHHhCcc--------cCCC--HHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhc--CC--
Confidence            233333110        0011  122333333333321            223335699999999998764432  10  


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                      ..-+..+|....++.-|.+.+.++|++..
T Consensus      1465 ----------------~~ILlLDEATSaLD~~te~~Iq~~L~~~~ 1493 (1560)
T PTZ00243       1465 ----------------SGFILMDEATANIDPALDRQIQATVMSAF 1493 (1560)
T ss_pred             ----------------CCEEEEeCCCccCCHHHHHHHHHHHHHHC
Confidence                            00144667777778888888888888764

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=98.30  E-value=9e-07  Score=97.13  Aligned_cols=151  Identities=15%  Similarity=0.171  Sum_probs=88.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCchh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSA   92 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~~   92 (299)
                      ++|.+++|+.++|+|++|+|||||+++|.+... .+.|.||+.++...    ....+|..+      .+.++....-..+
T Consensus      1238 is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i----~~~~lR~~i------s~IpQdp~LF~GT 1307 (1490)
T TIGR01271      1238 LSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSV----TLQTWRKAF------GVIPQKVFIFSGT 1307 (1490)
T ss_pred             cEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccC----CHHHHHhce------EEEeCCCccCccC
Confidence            457789999999999999999999999999654 46678888777533    112222211      2222222211222


Q ss_pred             hhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HH-----------HhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         93 LRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IA-----------KVTNGFSGADLTEICQRACKLAIRQSIET  160 (299)
Q Consensus        93 ~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA-----------~~t~glSggDl~~Lv~~A~~~a~~r~~~~  160 (299)
                      .++.+.       +. .  .-.++++..+++.+.+.+ +.           ..-..||+|++|++|...++..-.+    
T Consensus      1308 IR~NLd-------p~-~--~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~---- 1373 (1490)
T TIGR01271      1308 FRKNLD-------PY-E--QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAK---- 1373 (1490)
T ss_pred             HHHHhC-------cc-c--CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCC----
Confidence            333331       10 0  001233334444444422 22           2224599999999997664442111    


Q ss_pred             HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773        161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P  205 (299)
                                       -+..+|....++.-|.+.+.+.|.+..+
T Consensus      1374 -----------------ILlLDEaTS~lD~~Te~~I~~~L~~~~~ 1401 (1490)
T TIGR01271      1374 -----------------ILLLDEPSAHLDPVTLQIIRKTLKQSFS 1401 (1490)
T ss_pred             -----------------EEEEeCCcccCCHHHHHHHHHHHHHHcC
Confidence                             2446677777788888888888887643

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.30  E-value=9.4e-07  Score=89.34  Aligned_cols=146  Identities=18%  Similarity=0.251  Sum_probs=83.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.++|+||||||||||+++|++.+.+  +.+.+ +..+.-.|+....   ..               -....
T Consensus       338 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y~~q~~---~~---------------l~~~~  398 (635)
T PRK11147        338 FSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQHR---AE---------------LDPEK  398 (635)
T ss_pred             cEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEEEeCcc---cc---------------cCCCC
Confidence            4677899999999999999999999999998754  33433 2211000110000   00               00000


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-H-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-N-YIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ...+.+.......     .......++..++..+++ . .+.+....||||+.++|+...++..-.              
T Consensus       399 tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p--------------  459 (635)
T PRK11147        399 TVMDNLAEGKQEV-----MVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPS--------------  459 (635)
T ss_pred             CHHHHHHhhcccc-----cccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCC--------------
Confidence            1111111100000     001123345566667776 2 345666889999999998765444311              


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                             ..+..+|+....++.+.+.+.++|+++.
T Consensus       460 -------~lLlLDEPt~~LD~~~~~~l~~~l~~~~  487 (635)
T PRK11147        460 -------NLLILDEPTNDLDVETLELLEELLDSYQ  487 (635)
T ss_pred             -------CEEEEcCCCCCCCHHHHHHHHHHHHhCC
Confidence                   1244667777777788888888888764

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=98.30  E-value=1.2e-06  Score=83.01  Aligned_cols=124  Identities=19%  Similarity=0.329  Sum_probs=75.7

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccc----hhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCchhhh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKG----PELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSALR   94 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~----~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~~~~   94 (299)
                      .+++.+.|.|+||.||||.++.|++++.+++...+.    .++...+-|   ..++..|.......+       ....-.
T Consensus        98 r~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrG---tELq~YF~~l~~g~~-------r~v~K~  167 (591)
T COG1245          98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRG---TELQNYFKKLYEGEL-------RAVHKP  167 (591)
T ss_pred             CCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhh---hHHHHHHHHHHcCCc-------ceecch
Confidence            567899999999999999999999999998887764    233333222   234445544322111       011111


Q ss_pred             HHHhhcCccchhhc---CCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHH
Q psy13773         95 ETIVEVPNITWEDI---GGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKL  152 (299)
Q Consensus        95 ~~l~~l~~~l~~~~---~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~  152 (299)
                      +.+..+|..+...+   ...-++..+.+++.+.+++..+ .+....+|||+||+++..|+..
T Consensus       168 QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~  229 (591)
T COG1245         168 QYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALL  229 (591)
T ss_pred             HHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHh
Confidence            33333332222111   1112334456677888888654 5666899999999999888654

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.30  E-value=1.8e-06  Score=74.63  Aligned_cols=64  Identities=20%  Similarity=0.301  Sum_probs=52.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHH
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVT   77 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~   77 (299)
                      .++.+..+..+.++|.||+|||||+++||+.+.  .+.|.|++.++..+...+....+..+|+...
T Consensus        25 ~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~   90 (263)
T COG1101          25 LSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPL   90 (263)
T ss_pred             CceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchh
Confidence            567889999999999999999999999999775  5778899999987766555666777777543

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=98.28  E-value=2.7e-07  Score=85.78  Aligned_cols=142  Identities=15%  Similarity=0.195  Sum_probs=76.8

Q ss_pred             EEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-hhhhHHHhhcCc
Q psy13773         26 FYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-SALRETIVEVPN  102 (299)
Q Consensus        26 L~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-~~~~~~l~~l~~  102 (299)
                      |.||||||||||+|+|++...  .+.+.+++.++.....  ..+.+          .+.++...... ....+.+.. ..
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i----------~~v~q~~~l~~~~tv~enl~~-~~   67 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHI----------NMVFQSYALFPHMTVEENVAF-GL   67 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE----------EEEecCccccCCCcHHHHHHH-HH
Confidence            579999999999999999765  4566777765532100  00001          11111111111 111111110 00


Q ss_pred             cchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccc
Q psy13773        103 ITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMET  181 (299)
Q Consensus       103 ~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~  181 (299)
                      ....  ....+..+++..+++.+++.. +.+....||||+.|+++...++..-.+                     .+..
T Consensus        68 ~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~---------------------lllL  124 (325)
T TIGR01187        68 KMRK--VPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPK---------------------ILLL  124 (325)
T ss_pred             hhcC--CCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCC---------------------EEEE
Confidence            0000  001223456667777788854 445668899999999987665543221                     2335


Q ss_pred             CCCCCCcccccHHHHHHHHHhc
Q psy13773        182 EDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       182 ~~~~~~~~~it~~Df~~AL~~~  203 (299)
                      +|+....++.+.+.|.+.|++.
T Consensus       125 DEP~s~LD~~~~~~l~~~l~~l  146 (325)
T TIGR01187       125 DEPLSALDKKLRDQMQLELKTI  146 (325)
T ss_pred             eCCCccCCHHHHHHHHHHHHHH
Confidence            5566666666777777766654

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.27  E-value=8.5e-07  Score=75.35  Aligned_cols=34  Identities=26%  Similarity=0.244  Sum_probs=30.1

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCe
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQANF   49 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~   49 (299)
                      +.+.+++.++|.||||+|||||+|+|++...+..
T Consensus        20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~   53 (177)
T cd03222          20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNG   53 (177)
T ss_pred             cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC
Confidence            5778999999999999999999999999876433

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=98.27  E-value=8e-08  Score=86.55  Aligned_cols=51  Identities=6%  Similarity=-0.003  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCC---CCCcccccCCCCCCCeeee
Q psy13773        210 ADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQS---GGPNSAPANESGTGGILLM  262 (299)
Q Consensus       210 ~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~---k~s~~l~~g~~gtg~~ll~  262 (299)
                      +++.||++||+.+.+.+.|  +.........|+.   ....++||||||||||++-
T Consensus         6 ~~~~Gl~~vk~~i~~~~~~--~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA   59 (261)
T TIGR02881         6 SRMVGLDEVKALIKEIYAW--IQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVA   59 (261)
T ss_pred             HHhcChHHHHHHHHHHHHH--HHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHH
Confidence            5788999999999999999  6555444444443   4456899999999999875

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=2.7e-07  Score=90.92  Aligned_cols=56  Identities=20%  Similarity=0.182  Sum_probs=49.2

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCC-CCCCcccccCCCCCCCeeee
Q psy13773        204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQ-SGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~-~k~s~~l~~g~~gtg~~ll~  262 (299)
                      +..|+..||-|-++.|.++.|-|++   ||.|.-|..-- +---|+||+||||||||||-
T Consensus       144 ~~~v~F~DVAG~dEakeel~EiVdf---Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLA  200 (596)
T COG0465         144 QVKVTFADVAGVDEAKEELSELVDF---LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLA  200 (596)
T ss_pred             ccCcChhhhcCcHHHHHHHHHHHHH---HhCchhhHhcccccccceeEecCCCCCcHHHH
Confidence            5679999999999999999999998   99999885533 44459999999999999984

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.27  E-value=1.6e-06  Score=85.80  Aligned_cols=41  Identities=17%  Similarity=0.362  Sum_probs=34.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKG   54 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~   54 (299)
                      ++|.+.+++.++|+||||||||||+|+|++.+.+  +.+.+++
T Consensus        20 vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~   62 (530)
T PRK15064         20 ISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDP   62 (530)
T ss_pred             CEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC
Confidence            5677899999999999999999999999997754  4455543

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.26  E-value=9.9e-07  Score=87.84  Aligned_cols=144  Identities=17%  Similarity=0.138  Sum_probs=82.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCe--ecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc-CC-C
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANF--ISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG-KS-S   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~--i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~-~~-~   89 (299)
                      ++|.+.+++.++|.||||||||||+++|++...+..  +.+.. .+   .++                 +.++.. .. .
T Consensus       343 isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~---~i~-----------------~v~q~~~~~~~  401 (556)
T PRK11819        343 LSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV---KLA-----------------YVDQSRDALDP  401 (556)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce---EEE-----------------EEeCchhhcCC
Confidence            567789999999999999999999999999775433  33321 11   000                 000000 00 0


Q ss_pred             chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-H-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-Y-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                      .....+.+..... .    ........+...++..+++. . +.+....||||++++++...++..-.+           
T Consensus       402 ~~tv~e~l~~~~~-~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~-----------  465 (556)
T PRK11819        402 NKTVWEEISGGLD-I----IKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGN-----------  465 (556)
T ss_pred             CCCHHHHHHhhcc-c----ccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC-----------
Confidence            0011111111000 0    00011122333566777773 2 456668999999999987665543111           


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                .+..+|+....++.+.+.+.+.|.++.
T Consensus       466 ----------lllLDEPt~~LD~~~~~~l~~~l~~~~  492 (556)
T PRK11819        466 ----------VLLLDEPTNDLDVETLRALEEALLEFP  492 (556)
T ss_pred             ----------EEEEcCCCCCCCHHHHHHHHHHHHhCC
Confidence                      244666777777788888888887763

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.26  E-value=3.7e-07  Score=89.46  Aligned_cols=161  Identities=9%  Similarity=0.065  Sum_probs=89.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC----
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK----   87 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~----   87 (299)
                      ++|.+..++.++|+||||||||||+++|++...  .+.+.+++.++....   ....++.      ...+.++...    
T Consensus       267 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~---~~~~~~~------~i~~~~q~~~~~~~  337 (491)
T PRK10982        267 VSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHN---ANEAINH------GFALVTEERRSTGI  337 (491)
T ss_pred             eeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCC---HHHHHHC------CCEEcCCchhhCCc
Confidence            467789999999999999999999999999775  355666665543210   0000000      0011111000    


Q ss_pred             CCchhhhHH--HhhcCccchh-hcCCCccHHHHHhhhcccCCHH--HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         88 SSPSALRET--IVEVPNITWE-DIGGLEGVKRELQELVQDVDLN--YIAKVTNGFSGADLTEICQRACKLAIRQSIETEI  162 (299)
Q Consensus        88 ~~~~~~~~~--l~~l~~~l~~-~~~r~p~~~~R~~~l~~~v~l~--~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~  162 (299)
                      .........  +..+...... .+.......+++..+++.+++.  .+......||||++|+++...++..-.+      
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~------  411 (491)
T PRK10982        338 YAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPE------  411 (491)
T ss_pred             ccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCC------
Confidence            000000000  0000000000 0000012234555666777773  3566678999999999988654433111      


Q ss_pred             HHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        163 RREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                     -+..+|+....++.+.+.+.+.+++..
T Consensus       412 ---------------illLDEPt~gLD~~~~~~~~~~l~~l~  438 (491)
T PRK10982        412 ---------------ILMLDEPTRGIDVGAKFEIYQLIAELA  438 (491)
T ss_pred             ---------------EEEEcCCCcccChhHHHHHHHHHHHHH
Confidence                           244677778888889999988887653

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=98.25  E-value=1.9e-06  Score=94.19  Aligned_cols=44  Identities=27%  Similarity=0.493  Sum_probs=36.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecc-cchhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISV-KGPEL   57 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i-~~~~l   57 (299)
                      ++|.+++|+.++|+||+|||||||+++|++.+.+  +.+.+ ++.++
T Consensus       404 isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i  450 (1466)
T PTZ00265        404 LNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNL  450 (1466)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcch
Confidence            5677899999999999999999999999998764  55667 34555

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.24  E-value=1.2e-06  Score=87.25  Aligned_cols=144  Identities=17%  Similarity=0.163  Sum_probs=81.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCC--eecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC-C-C
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK-S-S   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~--~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~-~-~   89 (299)
                      ++|.+.+++.++|.||||||||||+++|++...+.  .+.+.. .+   .++                 +.++... . .
T Consensus       341 isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~---~i~-----------------~v~q~~~~~~~  399 (552)
T TIGR03719       341 LSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV---KLA-----------------YVDQSRDALDP  399 (552)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce---EEE-----------------EEeCCccccCC
Confidence            56778999999999999999999999999987543  333321 11   000                 0010000 0 0


Q ss_pred             chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-H-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-Y-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                      .....+.+.....     .........+...+++.+++. . +.+....||||++++++...++..-.+           
T Consensus       400 ~~tv~e~l~~~~~-----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~-----------  463 (552)
T TIGR03719       400 NKTVWEEISGGLD-----IIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGN-----------  463 (552)
T ss_pred             CCcHHHHHHhhcc-----ccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCC-----------
Confidence            0011111111000     000111122344566777774 2 345668899999999987765543211           


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                .+..+|+....++.+.+.+.+.|+++.
T Consensus       464 ----------lllLDEPt~~LD~~~~~~l~~~l~~~~  490 (552)
T TIGR03719       464 ----------VLLLDEPTNDLDVETLRALEEALLEFA  490 (552)
T ss_pred             ----------EEEEeCCCCCCCHHHHHHHHHHHHHCC
Confidence                      244556666677777777777777653

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.24  E-value=5.4e-07  Score=89.73  Aligned_cols=34  Identities=21%  Similarity=0.357  Sum_probs=30.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      ++|.+.+++.++|+||||||||||+++|++.+.+
T Consensus        26 vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p   59 (556)
T PRK11819         26 ISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE   59 (556)
T ss_pred             ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            5677899999999999999999999999998754

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=98.22  E-value=2.2e-06  Score=81.49  Aligned_cols=58  Identities=29%  Similarity=0.568  Sum_probs=50.8

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhh-cccc-ccHHHHHHHHHHHHH
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFG-ESEANVRDIFDKVTM   78 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~-~~~g-~~~~~i~~~f~~a~~   78 (299)
                      +..++|+||+|||||++++.||..++.+++.+++..+.. .|.| ..+..++.+|..|..
T Consensus        50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~  109 (443)
T PRK05201         50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVK  109 (443)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999988875 6888 557888888888753

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=1.9e-06  Score=72.98  Aligned_cols=39  Identities=28%  Similarity=0.451  Sum_probs=33.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      .+|.+.+++.+-|.||||+|||||+|.||+.+.+...+|
T Consensus        21 L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v   59 (209)
T COG4133          21 LSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV   59 (209)
T ss_pred             eeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeE
Confidence            356678999999999999999999999999887654444

>KOG0055|consensus

Probab=98.21  E-value=2.5e-06  Score=89.48  Aligned_cols=47  Identities=19%  Similarity=0.446  Sum_probs=40.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTM   60 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~   60 (299)
                      .++.+..|+.+.|+||+||||||++..|-+-..  .+.+.||+.++.+.
T Consensus      1009 l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~l 1057 (1228)
T KOG0055|consen 1009 LSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDL 1057 (1228)
T ss_pred             CcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccC
Confidence            456789999999999999999999999999775  57788999888664

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.21  E-value=5.8e-07  Score=74.49  Aligned_cols=42  Identities=29%  Similarity=0.453  Sum_probs=33.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGP   55 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~   55 (299)
                      .++.+.+++.++|.|+||+|||||+++|++.+..  +.+++++.
T Consensus        18 ~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~   61 (157)
T cd00267          18 VSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGK   61 (157)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCE
Confidence            4567789999999999999999999999997754  34455543

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0056|consensus

Probab=98.21  E-value=1.5e-06  Score=82.95  Aligned_cols=46  Identities=24%  Similarity=0.551  Sum_probs=40.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh--cCCeecccchhhhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC--QANFISVKGPELLT   59 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l--~~~~i~i~~~~l~~   59 (299)
                      ++|.+.+|+.+.|+||+|+||||++|.|-+..  ..+.+.||+.++..
T Consensus       557 isF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrn  604 (790)
T KOG0056|consen  557 ISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRN  604 (790)
T ss_pred             ceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHH
Confidence            67888999999999999999999999999965  46778899888754

>CHL00181 cbbX CbbX; Provisional

Probab=98.20  E-value=1e-07  Score=87.06  Aligned_cols=60  Identities=10%  Similarity=0.181  Sum_probs=42.8

Q ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC-CCCC---CCCcccccCCCCCCCeee
Q psy13773        194 AHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPN-QSQS---GGPNSAPANESGTGGILL  261 (299)
Q Consensus       194 ~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~-~~~~---k~s~~l~~g~~gtg~~ll  261 (299)
                      .++++++...     ++|++|+++||+.|.+-+.|   ++++.++. .|+.   +...+|||||||||||++
T Consensus        12 ~~~~~~~~~l-----~~~l~Gl~~vK~~i~e~~~~---~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~l   75 (287)
T CHL00181         12 TQIQEVLDIL-----DEELVGLAPVKTRIREIAAL---LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTV   75 (287)
T ss_pred             cCHHHHHHHH-----HHhcCCcHHHHHHHHHHHHH---HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHH
Confidence            3455555544     56899999999999999888   55665443 2222   233489999999999976

>KOG0060|consensus

Probab=98.20  E-value=1.7e-06  Score=84.02  Aligned_cols=122  Identities=17%  Similarity=0.288  Sum_probs=70.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCchhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSAL   93 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~~~   93 (299)
                      .++.+..+..+||+||+|||||+|+|++++.-...-..+.+..-     +..    ..+       .+.+++.-....++
T Consensus       454 Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~-----~~~----~~l-------fflPQrPYmt~GTL  517 (659)
T KOG0060|consen  454 LSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTD-----GGP----KDL-------FFLPQRPYMTLGTL  517 (659)
T ss_pred             eeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEeccc-----CCC----Cce-------EEecCCCCccccch
Confidence            35778999999999999999999999999976654444433211     100    011       23344444333344


Q ss_pred             hHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHHhcCC------------CCHHHHHHHHHHHHHHH
Q psy13773         94 RETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNG------------FSGADLTEICQRACKLA  153 (299)
Q Consensus        94 ~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~t~g------------lSggDl~~Lv~~A~~~a  153 (299)
                      ++.+.- |...... .+.--..+++...++.+.+..|..++.|            +|+|++|+++-+.....
T Consensus       518 RdQvIY-P~~~~~~-~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~  587 (659)
T KOG0060|consen  518 RDQVIY-PLKAEDM-DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYH  587 (659)
T ss_pred             hheeec-cCccccc-cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhc
Confidence            433221 1100000 0111124456666677777777776665            56999999986654443

>KOG0058|consensus

Probab=98.19  E-value=2.4e-06  Score=85.05  Aligned_cols=47  Identities=26%  Similarity=0.469  Sum_probs=40.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTM   60 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~   60 (299)
                      .+|.++||+.++|+||+|+||||++..|-+...  .+.|.+|+.+|...
T Consensus       487 lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~  535 (716)
T KOG0058|consen  487 LSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDI  535 (716)
T ss_pred             ceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhc
Confidence            567789999999999999999999999999765  46788898887653

>PLN03073 ABC transporter F family; Provisional

Probab=98.19  E-value=1.3e-06  Score=89.18  Aligned_cols=143  Identities=12%  Similarity=0.182  Sum_probs=82.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.++|+||||||||||+|+|++.+.+  +.+.++...-+.. +          ++          .......
T Consensus       528 vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igy-v----------~Q----------~~~~~l~  586 (718)
T PLN03073        528 LNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAV-F----------SQ----------HHVDGLD  586 (718)
T ss_pred             cEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEE-E----------ec----------cccccCC
Confidence            4677889999999999999999999999998764  3333332100000 0          00          0000000


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-HH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-YI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      .....+..+.    .....  ...+++..++..+++. .+ ......||||+.++++...++..-.+             
T Consensus       587 ~~~~~~~~~~----~~~~~--~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~-------------  647 (718)
T PLN03073        587 LSSNPLLYMM----RCFPG--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH-------------  647 (718)
T ss_pred             cchhHHHHHH----HhcCC--CCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCC-------------
Confidence            0000000000    00000  1134556677778884 33 45568899999999987654443111             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                              .+..+|+....++.+.+.+.++|.++.
T Consensus       648 --------lLLLDEPT~~LD~~s~~~l~~~L~~~~  674 (718)
T PLN03073        648 --------ILLLDEPSNHLDLDAVEALIQGLVLFQ  674 (718)
T ss_pred             --------EEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence                    244667777777788888888887653

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=98.17  E-value=5.2e-07  Score=98.27  Aligned_cols=157  Identities=15%  Similarity=0.179  Sum_probs=85.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK   87 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~   87 (299)
                      +++.+.+|+.++|.||||+|||||+|+|++...      .+.+.+++.++..         ....+..  ...+..+...
T Consensus        80 vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~---------~~~~~r~--~i~yv~Q~d~  148 (1394)
T TIGR00956        80 MDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEE---------IKKHYRG--DVVYNAETDV  148 (1394)
T ss_pred             CEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHH---------HHhhcCc--eeEEeccccc
Confidence            556788999999999999999999999999752      3456666544321         1000000  0011111111


Q ss_pred             CCc-hhhhHHHhhcCccch-hh-c-CCCc--cHHHH-HhhhcccCCHHHHHH------hcCCCCHHHHHHHHHHHHHHHH
Q psy13773         88 SSP-SALRETIVEVPNITW-ED-I-GGLE--GVKRE-LQELVQDVDLNYIAK------VTNGFSGADLTEICQRACKLAI  154 (299)
Q Consensus        88 ~~~-~~~~~~l~~l~~~l~-~~-~-~r~p--~~~~R-~~~l~~~v~l~~LA~------~t~glSggDl~~Lv~~A~~~a~  154 (299)
                      .-+ ....+.+.- ...+. +. . ....  +..++ .+.+++.+++...+.      ...|+|||++|++....++..-
T Consensus       149 ~~~~lTV~E~l~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~  227 (1394)
T TIGR00956       149 HFPHLTVGETLDF-AARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGG  227 (1394)
T ss_pred             cCCCCCHHHHHHH-HHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhC
Confidence            111 112222211 00000 00 0 0011  11223 245677788865543      2468999999999887655442


Q ss_pred             HHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        155 RQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       155 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                      .+                     .+..+|+....+..+..++.+.|++.
T Consensus       228 p~---------------------vlllDEPTsgLD~~~~~~i~~~L~~l  255 (1394)
T TIGR00956       228 AK---------------------IQCWDNATRGLDSATALEFIRALKTS  255 (1394)
T ss_pred             CC---------------------EEEEeCCCCCcCHHHHHHHHHHHHHH
Confidence            22                     23456666777777888888887775

>CHL00181 cbbX CbbX; Provisional

Probab=98.17  E-value=2.2e-06  Score=78.39  Aligned_cols=68  Identities=21%  Similarity=0.420  Sum_probs=51.8

Q ss_pred             hhhhhcCCCCC---CcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHH
Q psy13773         10 PEKFLKFGMQP---SRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVT   77 (299)
Q Consensus        10 p~~~~sl~i~~---~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~   77 (299)
                      ++.+...++.+   +..++|+|||||||||+++++|..+.       .+++++++.++.+.++|++...++.+|+.+.
T Consensus        45 ~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~  122 (287)
T CHL00181         45 DRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAM  122 (287)
T ss_pred             HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHcc
Confidence            44555555543   44589999999999999999998653       2478888889988888888777777777643

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.17  E-value=1.2e-06  Score=71.68  Aligned_cols=129  Identities=14%  Similarity=0.239  Sum_probs=70.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCe-----ecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANF-----ISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS   88 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~-----i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~   88 (299)
                      +++.|.+++.+-|+||+|||||||+..+++.+...|     +.++..++...  -...+.+..+|+.+-.   .+.. +.
T Consensus        21 ~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~l--Pa~qRq~GiLFQD~lL---Fphl-sV   94 (213)
T COG4136          21 VNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDML--PAAQRQIGILFQDALL---FPHL-SV   94 (213)
T ss_pred             eeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeecccc--chhhhheeeeeccccc---cccc-cc
Confidence            567889999999999999999999999999876432     33443333211  0112233333432211   0000 00


Q ss_pred             CchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy13773         89 SPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQS  157 (299)
Q Consensus        89 ~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~  157 (299)
                      ..    ..+..+|..+..     ..++.-+...++.+.+..+. .-++.+|||+..++....++.|..+.
T Consensus        95 g~----Nl~fAlp~~~KG-----~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~  155 (213)
T COG4136          95 GQ----NLLFALPATLKG-----NARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKA  155 (213)
T ss_pred             cc----ceEEecCccccc-----HHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcce
Confidence            00    111111211111     01111122566777786655 45578999999998877766665443

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.14  E-value=1.9e-06  Score=72.27  Aligned_cols=37  Identities=27%  Similarity=0.391  Sum_probs=33.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFI   50 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i   50 (299)
                      ++|.+.|++.+.|+|.+|+|||||++||+..+.+...
T Consensus        25 vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G   61 (258)
T COG4107          25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG   61 (258)
T ss_pred             cceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCC
Confidence            6788999999999999999999999999998875443

>KOG0927|consensus

Probab=98.13  E-value=1.1e-05  Score=77.94  Aligned_cols=131  Identities=14%  Similarity=0.109  Sum_probs=68.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHH-----H----HHhhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTM-----E----NFRYA   84 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~-----~----~~~~~   84 (299)
                      +.|.+.+++.+.|+|++||||||++++|++..-+---.++..-+.....-.....+..++..+..     .    .+...
T Consensus        94 ~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~  173 (614)
T KOG0927|consen   94 VTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQA  173 (614)
T ss_pred             eeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence            56778899999999999999999999999854332112222112121111223344444421111     0    11111


Q ss_pred             hcCCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH--HHHHHhcCCCCHHHHHHHHHHHH
Q psy13773         85 MGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL--NYIAKVTNGFSGADLTEICQRAC  150 (299)
Q Consensus        85 ~~~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l--~~LA~~t~glSggDl~~Lv~~A~  150 (299)
                      ......    ..+..+...++.  ......+.|+..++..+.+  +..++.+.+||||+..|+....+
T Consensus       174 ~d~~~~----~~l~~~~~r~~~--~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~  235 (614)
T KOG0927|consen  174 CDDKEK----DELDELYERLDE--MDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARA  235 (614)
T ss_pred             ccchhh----hHHHHHHHHHHh--hCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHH
Confidence            111000    011100000000  1123345566666666666  55678999999999988765443

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.12  E-value=2.4e-06  Score=85.03  Aligned_cols=40  Identities=18%  Similarity=0.248  Sum_probs=33.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceeccc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVK   53 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~   53 (299)
                      ++|.+.+++.++|+||||||||||+++|++...+  +.+.++
T Consensus        24 is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~   65 (552)
T TIGR03719        24 ISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPA   65 (552)
T ss_pred             ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEec
Confidence            5677899999999999999999999999998653  444443

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=98.10  E-value=3e-07  Score=83.90  Aligned_cols=50  Identities=6%  Similarity=0.058  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCCC-CCCC---CCCcccccCCCCCCCeeee
Q psy13773        210 ADIRKYEMFAQTLQQSRGFGTNFRFPSNPN-QSQS---GGPNSAPANESGTGGILLM  262 (299)
Q Consensus       210 ~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~-~~~~---k~s~~l~~g~~gtg~~ll~  262 (299)
                      ++++|++++|+.+.+.+.|   +++++.+. .|+.   .+.+++|+||||||||++-
T Consensus        22 ~~l~Gl~~vk~~i~e~~~~---~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA   75 (284)
T TIGR02880        22 RELIGLKPVKTRIREIAAL---LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVA   75 (284)
T ss_pred             HhccCHHHHHHHHHHHHHH---HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHH
Confidence            4689999999999999988   66776544 2332   3458999999999999863

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=98.10  E-value=2.3e-06  Score=74.79  Aligned_cols=36  Identities=56%  Similarity=0.883  Sum_probs=29.0

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchh
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE   56 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~   56 (299)
                      -..++||||||+|||||++.||++++..+..+++..
T Consensus        50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~   85 (233)
T PF05496_consen   50 LDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPA   85 (233)
T ss_dssp             --EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC
T ss_pred             cceEEEECCCccchhHHHHHHHhccCCCeEeccchh
Confidence            458999999999999999999999999887777644

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>KOG0061|consensus

Probab=98.09  E-value=1.5e-06  Score=87.23  Aligned_cols=150  Identities=18%  Similarity=0.262  Sum_probs=87.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC-----CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA-----NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS   88 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~-----~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~   88 (299)
                      ++..+.+++..+|.||+|+|||||+++||+....     +.+.+++.....           ..|+...  .+..+.+..
T Consensus        49 vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~-----------~~~~~~s--~yV~QdD~l  115 (613)
T KOG0061|consen   49 VSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS-----------RSFRKIS--GYVQQDDVL  115 (613)
T ss_pred             cEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch-----------hhhhhee--EEEcccccc
Confidence            3445789999999999999999999999997753     345556522211           1111110  111111111


Q ss_pred             -CchhhhHHHhhcCccchhhcCCC------ccHHHHHhhhcccCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHH
Q psy13773         89 -SPSALRETIVEVPNITWEDIGGL------EGVKRELQELVQDVDLNYIAKVTN------GFSGADLTEICQRACKLAIR  155 (299)
Q Consensus        89 -~~~~~~~~l~~l~~~l~~~~~r~------p~~~~R~~~l~~~v~l~~LA~~t~------glSggDl~~Lv~~A~~~a~~  155 (299)
                       ..-+.++.+.-      .+..|+      .+.++|++.++.++++...++.--      |.|||+.+|+....-+.   
T Consensus       116 ~~~LTV~EtL~f------~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell---  186 (613)
T KOG0061|consen  116 LPTLTVRETLRF------SALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELL---  186 (613)
T ss_pred             cccccHHHHHHH------HHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHH---
Confidence             11122222211      111222      345678889999999987775443      69999999988654211   


Q ss_pred             HHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        156 QSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       156 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                     .+|.   -+-.+|+....+..+.....++|++.
T Consensus       187 ---------------~~P~---iLflDEPTSGLDS~sA~~vv~~Lk~l  216 (613)
T KOG0061|consen  187 ---------------TDPS---ILFLDEPTSGLDSFSALQVVQLLKRL  216 (613)
T ss_pred             ---------------cCCC---EEEecCCCCCcchhhHHHHHHHHHHH
Confidence                           1111   23355666666667777777777665

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=98.07  E-value=6.4e-06  Score=77.06  Aligned_cols=51  Identities=29%  Similarity=0.577  Sum_probs=41.5

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHH
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTM   78 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~   78 (299)
                      -.+.+|+||||||||||++.||+..+..|..++...       ...+.++.+++.++.
T Consensus        48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-------~gvkdlr~i~e~a~~   98 (436)
T COG2256          48 LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-------SGVKDLREIIEEARK   98 (436)
T ss_pred             CceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-------ccHHHHHHHHHHHHH
Confidence            457899999999999999999999999998887422       245678888887754

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.06  E-value=2.1e-05  Score=70.96  Aligned_cols=170  Identities=13%  Similarity=0.112  Sum_probs=88.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHH-----Hhhc------------------CCeecccchhhhhccccccHHHHH
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIA-----NECQ------------------ANFISVKGPELLTMWFGESEANVR   70 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La-----~~l~------------------~~~i~i~~~~l~~~~~g~~~~~i~   70 (299)
                      +++.++.+..+.+.|++|||||||++.+.     ..++                  ...+.||...+.. ....+.....
T Consensus        14 v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~-~~rs~~~ty~   92 (261)
T cd03271          14 IDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGR-TPRSNPATYT   92 (261)
T ss_pred             ceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCC-CCCCcHHHHH
Confidence            45667899999999999999999999662     2211                  1134444443322 1222334455


Q ss_pred             HHHHHHHHHHHhhhhcCCC--chhhh-----HHHhhcC-ccchhhc---CCCccHHHHHhhhcccCCHHH--HHHhcCCC
Q psy13773         71 DIFDKVTMENFRYAMGKSS--PSALR-----ETIVEVP-NITWEDI---GGLEGVKRELQELVQDVDLNY--IAKVTNGF  137 (299)
Q Consensus        71 ~~f~~a~~~~~~~~~~~~~--~~~~~-----~~l~~l~-~~l~~~~---~r~p~~~~R~~~l~~~v~l~~--LA~~t~gl  137 (299)
                      .+|+..+. .||..-....  .....     ..+.++. ..+.+++   ...+. ..+...+++.+++..  +.+....|
T Consensus        93 ~~~~~ir~-~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~-~~~~~~~L~~vgL~~l~l~~~~~~L  170 (261)
T cd03271          93 GVFDEIRE-LFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK-IARKLQTLCDVGLGYIKLGQPATTL  170 (261)
T ss_pred             HHHHHHHH-hcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh-HHHHHHHHHHcCCchhhhcCccccC
Confidence            56665554 3333211110  00000     0000000 0011110   11122 245556778888865  56667899


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        138 SGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       138 SggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                      |+|+.|++....++..-                  +.....+..+|+.....+.+.+.+.+.|++.+
T Consensus       171 SgGe~QRl~LAraL~~~------------------~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~  219 (261)
T cd03271         171 SGGEAQRIKLAKELSKR------------------STGKTLYILDEPTTGLHFHDVKKLLEVLQRLV  219 (261)
T ss_pred             CHHHHHHHHHHHHHhcC------------------CCCCcEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence            99999998866544321                  00011244556666666666666767666553

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=98.04  E-value=1.2e-05  Score=76.35  Aligned_cols=100  Identities=21%  Similarity=0.290  Sum_probs=60.5

Q ss_pred             CCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeec-------ccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773         18 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFIS-------VKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP   90 (299)
Q Consensus        18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~-------i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~   90 (299)
                      +..++.+.+.||||.||||+++.||+.+.+....       ....-+...+    ...+++++..+....+       ..
T Consensus       364 i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~----~gtV~~~l~~~~~~~~-------~~  432 (591)
T COG1245         364 IYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDY----DGTVEDLLRSAIRSAF-------GS  432 (591)
T ss_pred             eecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCC----CCcHHHHHHHhhhhhc-------cc
Confidence            5678899999999999999999999988765432       1111222221    2234444433221000       00


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKL  152 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~  152 (299)
                      +                        --..++..-++++.|- +...++|||++|+++..|++.
T Consensus       433 s------------------------~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~  471 (591)
T COG1245         433 S------------------------YFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALS  471 (591)
T ss_pred             c------------------------hhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhc
Confidence            0                        0011345567786654 555899999999999887553

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.00  E-value=7.2e-06  Score=72.12  Aligned_cols=40  Identities=30%  Similarity=0.336  Sum_probs=35.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVK   53 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~   53 (299)
                      ++|.+..++.+.|+|+||+|||||+|.||+.+.+....+.
T Consensus        46 isf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~   85 (249)
T COG1134          46 ISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVK   85 (249)
T ss_pred             ceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEE
Confidence            7888999999999999999999999999998877655544

>KOG0743|consensus

Probab=97.98  E-value=4.5e-06  Score=79.12  Aligned_cols=47  Identities=30%  Similarity=0.521  Sum_probs=40.1

Q ss_pred             cChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccc
Q psy13773          8 EHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKG   54 (299)
Q Consensus         8 ~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~   54 (299)
                      ...+.|...+..-.++.|||||||||||+++-|||+.+.-..+.+.-
T Consensus       222 k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeL  268 (457)
T KOG0743|consen  222 KGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLEL  268 (457)
T ss_pred             hcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeee
Confidence            34567888888888999999999999999999999999877766553

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.98  E-value=5.1e-06  Score=64.51  Aligned_cols=41  Identities=27%  Similarity=0.316  Sum_probs=32.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL   58 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~   58 (299)
                      +++.+.+++.++|.||||||||||++++.    .+.+.+.+.++.
T Consensus         8 vsl~i~~ge~v~I~GpSGsGKSTLl~~l~----~G~i~~~g~di~   48 (107)
T cd00820           8 VLVDVYGKVGVLITGDSGIGKTELALELI----KRKHRLVGDDNV   48 (107)
T ss_pred             eEEEEcCCEEEEEEcCCCCCHHHHHHHhh----CCeEEEeeEeHH
Confidence            45677889999999999999999999987    344566665553

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>KOG0064|consensus

Probab=97.97  E-value=9.2e-06  Score=78.33  Aligned_cols=32  Identities=31%  Similarity=0.667  Sum_probs=29.0

Q ss_pred             cCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        15 sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      +|.+.+|..+||.||||||||+|.|.|++.-.
T Consensus       502 tf~i~~G~hLLItGPNGCGKSSLfRILggLWP  533 (728)
T KOG0064|consen  502 TFQIEPGMHLLITGPNGCGKSSLFRILGGLWP  533 (728)
T ss_pred             eEEecCCceEEEECCCCccHHHHHHHHhccCc
Confidence            56789999999999999999999999999654

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=97.96  E-value=5.3e-06  Score=72.45  Aligned_cols=37  Identities=22%  Similarity=0.231  Sum_probs=32.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFI   50 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i   50 (299)
                      ++|.+.+++.++|.||||||||||+++|++...+...
T Consensus         6 vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG   42 (213)
T PRK15177          6 TDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEG   42 (213)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCC
Confidence            5788899999999999999999999999997654433

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=97.95  E-value=1.6e-06  Score=83.97  Aligned_cols=44  Identities=20%  Similarity=0.373  Sum_probs=37.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPEL   57 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l   57 (299)
                      ++|.+.+++.+.|+|.||+|||||+|.|++...+  +.+.+++...
T Consensus        27 v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~   72 (500)
T COG1129          27 VSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPV   72 (500)
T ss_pred             ceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEc
Confidence            6788999999999999999999999999997765  5566776554

>KOG0059|consensus

Probab=97.94  E-value=4.7e-06  Score=87.21  Aligned_cols=158  Identities=16%  Similarity=0.204  Sum_probs=102.1

Q ss_pred             hhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773         13 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP   90 (299)
Q Consensus        13 ~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~   90 (299)
                      ..++.+++++++.|.|+||+||||+.+++.++..+  +.+.+.+.++.....      ..++++   ....|++.+....
T Consensus       583 ~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~------~~~~~~---~iGyCPQ~d~l~~  653 (885)
T KOG0059|consen  583 GLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTD------FQQVRK---QLGYCPQFDALWE  653 (885)
T ss_pred             ceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccc------hhhhhh---hcccCCchhhhhh
Confidence            46778999999999999999999999999997754  556666666644211      001111   1144554433222


Q ss_pred             h-hhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 S-ALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRER  166 (299)
Q Consensus        91 ~-~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~  166 (299)
                      . +.++.+.-     ...++..|  +..+.++.+++.+++.. ..++..-||||++++|....+...-..          
T Consensus       654 ~lT~rEhL~~-----~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~----------  718 (885)
T KOG0059|consen  654 ELTGREHLEF-----YARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPS----------  718 (885)
T ss_pred             hccHHHHHHH-----HHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCC----------
Confidence            2 12222221     11223333  66677788899999944 456668899999999998765543221          


Q ss_pred             HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773        167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P  205 (299)
                                 .+..+++....+|.++.++...+.+.+.
T Consensus       719 -----------vi~LDEPstGmDP~arr~lW~ii~~~~k  746 (885)
T KOG0059|consen  719 -----------VILLDEPSTGLDPKARRHLWDIIARLRK  746 (885)
T ss_pred             -----------EEEecCCCCCCCHHHHHHHHHHHHHHHh
Confidence                       2445566667788889999888888875

>KOG0989|consensus

Probab=97.94  E-value=6.1e-06  Score=74.70  Aligned_cols=47  Identities=17%  Similarity=-0.009  Sum_probs=39.2

Q ss_pred             HHhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeee
Q psy13773        200 MRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILL  261 (299)
Q Consensus       200 L~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll  261 (299)
                      -++++| =+.+|+-|-+.|.+.++.++.-              +--+.-|||||||||||..
T Consensus        27 teKYrP-kt~de~~gQe~vV~~L~~a~~~--------------~~lp~~LFyGPpGTGKTSt   73 (346)
T KOG0989|consen   27 TEKYRP-KTFDELAGQEHVVQVLKNALLR--------------RILPHYLFYGPPGTGKTST   73 (346)
T ss_pred             HHHhCC-CcHHhhcchHHHHHHHHHHHhh--------------cCCceEEeeCCCCCcHhHH
Confidence            355677 6678999999999999999865              5567789999999999964

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=97.94  E-value=3.7e-06  Score=71.71  Aligned_cols=123  Identities=18%  Similarity=0.275  Sum_probs=74.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccc-hhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKG-PELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~-~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~   90 (299)
                      .+|.+.+++--.|+||||+||||++.+|.+...+  +.+++++ .+|...    .+-.+      |+. .++.+++...-
T Consensus        24 ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~----~e~~I------Ar~-GIGRKFQ~PtV   92 (249)
T COG4674          24 LSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKL----PEHRI------ARA-GIGRKFQKPTV   92 (249)
T ss_pred             eEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccC----CHHHH------HHh-ccCccccCCee
Confidence            4667889999999999999999999999998765  4566666 555443    11111      221 23333322211


Q ss_pred             ---hhhhHHH---hhcCccchhhc--CCCccHHHHHhhhcccCCHHHHHHhc-CCCCHHHHHHHHH
Q psy13773         91 ---SALRETI---VEVPNITWEDI--GGLEGVKRELQELVQDVDLNYIAKVT-NGFSGADLTEICQ  147 (299)
Q Consensus        91 ---~~~~~~l---~~l~~~l~~~~--~r~p~~~~R~~~l~~~v~l~~LA~~t-~glSggDl~~Lv~  147 (299)
                         -..++.+   ......++..+  +...+.+.|++.++..+.+...+... .-+|-|+.|.|-.
T Consensus        93 fe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEI  158 (249)
T COG4674          93 FENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEI  158 (249)
T ss_pred             hhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhh
Confidence               1111111   11122223322  23566778899999999997766555 4589999888743

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=97.93  E-value=6.2e-05  Score=71.50  Aligned_cols=37  Identities=32%  Similarity=0.567  Sum_probs=30.1

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhh-----cCCeecccchh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPE   56 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l-----~~~~i~i~~~~   56 (299)
                      .+..++|+||+|+|||++++.++..+     ...+++++|..
T Consensus        54 ~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~   95 (394)
T PRK00411         54 RPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQI   95 (394)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCc
Confidence            44678999999999999999999876     34567787754

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.91  E-value=1e-05  Score=71.24  Aligned_cols=152  Identities=14%  Similarity=0.241  Sum_probs=89.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      .+|.+++++.+.|.|+||+||||++|+|.+.+.+  +.|.+++..+...        +.+   +   ..+.+..-...+ 
T Consensus        21 isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~--------~~~---r---IGyLPEERGLy~k   86 (300)
T COG4152          21 ISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE--------IKN---R---IGYLPEERGLYPK   86 (300)
T ss_pred             eeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh--------hhh---h---cccChhhhccCcc
Confidence            5678899999999999999999999999998875  5566666554321        100   0   011221111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCH-HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDL-NYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l-~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                      ......+.-+     ..+...|  +...++..+++.+++ ....++.+.+|-|..|.+---++..               
T Consensus        87 ~tv~dql~yl-----a~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisavi---------------  146 (300)
T COG4152          87 MTVEDQLKYL-----AELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVI---------------  146 (300)
T ss_pred             CcHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHh---------------
Confidence            1111111100     0112233  344555677888877 4455666778878777654332211               


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P  205 (299)
                         +.|.   .+..+++.+..+||+.+-+.+++.+.+.
T Consensus       147 ---HePe---LlILDEPFSGLDPVN~elLk~~I~~lk~  178 (300)
T COG4152         147 ---HEPE---LLILDEPFSGLDPVNVELLKDAIFELKE  178 (300)
T ss_pred             ---cCCC---EEEecCCccCCChhhHHHHHHHHHHHHh
Confidence               1111   3446677788899999999999988874

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.90  E-value=8.5e-06  Score=64.08  Aligned_cols=32  Identities=38%  Similarity=0.616  Sum_probs=27.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCeecccc
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANFISVKG   54 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~   54 (299)
                      .|+|.|+|||||||+++.||..++..++.++.
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~   32 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVISMDD   32 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence            47899999999999999999998766655543

...

>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting

Probab=97.90  E-value=1e-05  Score=56.48  Aligned_cols=36  Identities=36%  Similarity=0.633  Sum_probs=31.8

Q ss_pred             CcccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Q psy13773        187 PVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTL  222 (299)
Q Consensus       187 ~~~~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i  222 (299)
                      ..++|+.+||++||++++|||+.+||..|++|.++|
T Consensus        26 ~~p~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~F   61 (62)
T PF09336_consen   26 KEPPITMEDFEEALKKVKPSVSQEDLKKYEEWTKEF   61 (62)
T ss_dssp             -HHHBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Confidence            335799999999999999999999999999999886

It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.88  E-value=1.4e-05  Score=62.91  Aligned_cols=37  Identities=41%  Similarity=0.711  Sum_probs=31.0

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCC---eecccchhh
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQAN---FISVKGPEL   57 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~---~i~i~~~~l   57 (299)
                      +..++|+||+||||||+++.++..+...   .+++++...
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~   41 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI   41 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence            5689999999999999999999988764   677776543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=97.86  E-value=9.7e-06  Score=70.07  Aligned_cols=41  Identities=29%  Similarity=0.451  Sum_probs=34.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKG   54 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~   54 (299)
                      ++|.+.+++.++|.||||+|||||+++|++...+  +.+.+++
T Consensus        24 ~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g   66 (204)
T cd03250          24 INLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG   66 (204)
T ss_pred             eeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC
Confidence            5567899999999999999999999999997654  4455554

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK08118 topology modulation protein; Reviewed

Probab=97.83  E-value=3.7e-05  Score=64.63  Aligned_cols=32  Identities=19%  Similarity=0.423  Sum_probs=29.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCeecccc
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANFISVKG   54 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~   54 (299)
                      .|+|+||+||||||+++.|+..++..++.+|.
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~   34 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA   34 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence            58999999999999999999999988888774

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=97.79  E-value=0.00027  Score=67.70  Aligned_cols=38  Identities=34%  Similarity=0.506  Sum_probs=30.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhh-----cCCeecccchhhhh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLT   59 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l-----~~~~i~i~~~~l~~   59 (299)
                      ..++|+||+|+|||+|+++++.++     +..++++++.++..
T Consensus       137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~  179 (405)
T TIGR00362       137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTN  179 (405)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHH
Confidence            468999999999999999999976     34567788776543

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PLN03130 ABC transporter C family member; Provisional

Probab=97.79  E-value=3.6e-05  Score=85.21  Aligned_cols=36  Identities=25%  Similarity=0.290  Sum_probs=32.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCe
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANF   49 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~   49 (299)
                      +++.+++|+.++|+||+|||||||+++|.+++....
T Consensus       636 inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~  671 (1622)
T PLN03130        636 INLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRS  671 (1622)
T ss_pred             eeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCC
Confidence            567789999999999999999999999999887543

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=97.78  E-value=5.4e-05  Score=63.67  Aligned_cols=45  Identities=22%  Similarity=0.290  Sum_probs=37.5

Q ss_pred             cCCCCCCcEEEEEcCCCChHHHHHHHHHHhh-cCCeecccchhhhh
Q psy13773         15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANEC-QANFISVKGPELLT   59 (299)
Q Consensus        15 sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l-~~~~i~i~~~~l~~   59 (299)
                      +..+..++.+-++||||||||||+-.+|+.. +.+.|.+++.++..
T Consensus        19 S~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~   64 (248)
T COG4138          19 SGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEA   64 (248)
T ss_pred             ccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhH
Confidence            3456788999999999999999999999965 46888888877643

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.78  E-value=1.9e-05  Score=63.85  Aligned_cols=34  Identities=38%  Similarity=0.581  Sum_probs=29.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCeecccchh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPE   56 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~   56 (299)
                      .|+|+||+|||||++++.+|..++..++.+.+..
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~   34 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSS   34 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhhcceEEEEecc
Confidence            4899999999999999999999988887776654

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.74  E-value=3.4e-05  Score=61.31  Aligned_cols=40  Identities=53%  Similarity=0.931  Sum_probs=33.2

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhh---cCCeecccchhhh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL   58 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~~~~l~   58 (299)
                      ..+..++|+||+|+|||++++.++..+   +..++.+++.+..
T Consensus        17 ~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~   59 (151)
T cd00009          17 PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLL   59 (151)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhh
Confidence            356789999999999999999999988   6677777766543

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=97.74  E-value=4e-05  Score=70.81  Aligned_cols=57  Identities=35%  Similarity=0.630  Sum_probs=46.6

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHH
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKV   76 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a   76 (299)
                      -.++++|+.||||+|||.|+-.||.++|  .+|..++++++++.-+.+++...+. |+++
T Consensus        63 ~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L~qa-~Rra  121 (450)
T COG1224          63 MAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQA-LRRA  121 (450)
T ss_pred             ccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHHHHHHH-HHHh
Confidence            4689999999999999999999999998  5789999999988766666554443 4433

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=97.72  E-value=3.7e-05  Score=71.74  Aligned_cols=54  Identities=41%  Similarity=0.658  Sum_probs=40.4

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHH
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFD   74 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~   74 (299)
                      .++++||.||||||||.|+-+||.+++  .+|..++++++++.-+.+++. +.+.|+
T Consensus        49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKTE~-L~qa~R  104 (398)
T PF06068_consen   49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKTEA-LTQAFR  104 (398)
T ss_dssp             TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HHHH-HHHHHH
T ss_pred             cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCchHH-HHHHHH
Confidence            589999999999999999999999998  578999999998876665554 333444

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=97.72  E-value=3.6e-05  Score=84.97  Aligned_cols=40  Identities=28%  Similarity=0.488  Sum_probs=33.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceeccc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVK   53 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~   53 (299)
                      +++.+++|+.++|+||+|||||||+++|++++.+  +.+.++
T Consensus       657 isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~  698 (1522)
T TIGR00957       657 ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMK  698 (1522)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEEC
Confidence            4677899999999999999999999999998764  444444

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=97.71  E-value=2.3e-05  Score=71.49  Aligned_cols=41  Identities=24%  Similarity=0.347  Sum_probs=33.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKG   54 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~   54 (299)
                      ++|.+.+++.++|+|+||+|||||+++|++.+.+  +.+.+++
T Consensus        56 vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g   98 (282)
T cd03291          56 INLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG   98 (282)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence            4677899999999999999999999999997754  4455543

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK00131 aroK shikimate kinase; Reviewed

Probab=97.70  E-value=4.2e-05  Score=63.79  Aligned_cols=35  Identities=20%  Similarity=0.402  Sum_probs=30.2

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVK   53 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~   53 (299)
                      .++..|+|+|++||||||+++.||..++..++..+
T Consensus         2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d   36 (175)
T PRK00131          2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD   36 (175)
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence            46778999999999999999999999987766543

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=97.69  E-value=2.7e-05  Score=75.08  Aligned_cols=62  Identities=13%  Similarity=0.187  Sum_probs=42.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCC-eecccchhhhhccccccHHHHHHHHHHH
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN-FISVKGPELLTMWFGESEANVRDIFDKV   76 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~-~i~i~~~~l~~~~~g~~~~~i~~~f~~a   76 (299)
                      +++.+..++.++|+||+|||||||+|........+ .+.+++.++.+.. ......+|.+|+.-
T Consensus        25 Vsl~i~~GEiv~L~G~SGsGKSTLLr~~l~~~~sGg~I~ldg~~~~~~~-~~ai~~LR~VFQ~f   87 (504)
T TIGR03238        25 FNKELPSSSLLFLCGSSGDGKSEILAENKRKFSEGYEFFLDATHSFSPN-KNAMETLDEIFDGF   87 (504)
T ss_pred             CceeecCCCEEEEECCCCCCHHHHHhcCCCCCCCCCEEEECCEECCCCC-HHHHHHHHHHHHhh
Confidence            46778999999999999999999999211122234 4788888776531 12334566666643

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>PRK07261 topology modulation protein; Provisional

Probab=97.66  E-value=9.1e-05  Score=62.48  Aligned_cols=34  Identities=18%  Similarity=0.366  Sum_probs=29.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCeecccchh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPE   56 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~   56 (299)
                      .|+|+|++|||||||++.|+..++...+.+|...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~   35 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH   35 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence            4899999999999999999999888777776443

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=97.66  E-value=5.3e-05  Score=72.60  Aligned_cols=46  Identities=33%  Similarity=0.546  Sum_probs=39.3

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhh-cccccc
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFGES   65 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~-~~~g~~   65 (299)
                      ....++|+||+|||||+++++||..++.+++.+++..+.. .|+|..
T Consensus       107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d  153 (412)
T PRK05342        107 QKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGED  153 (412)
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccch
Confidence            3468999999999999999999999999999999988753 466654

>KOG0062|consensus

Probab=97.65  E-value=0.00014  Score=70.08  Aligned_cols=29  Identities=34%  Similarity=0.480  Sum_probs=26.5

Q ss_pred             cCCCCCCcEEEEEcCCCChHHHHHHHHHH
Q psy13773         15 KFGMQPSRGVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        15 sl~i~~~~~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      ++.+..|+...|+|+||+|||||+|+|+.
T Consensus       100 ~L~L~~GrRYGLvGrNG~GKsTLLRaia~  128 (582)
T KOG0062|consen  100 NLTLSRGRRYGLVGRNGIGKSTLLRAIAN  128 (582)
T ss_pred             ceeeecccccceeCCCCCcHHHHHHHHHh
Confidence            45667889999999999999999999999

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=97.63  E-value=2.4e-05  Score=74.88  Aligned_cols=46  Identities=24%  Similarity=0.287  Sum_probs=39.4

Q ss_pred             hhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhh
Q psy13773         13 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELL   58 (299)
Q Consensus        13 ~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~   58 (299)
                      -++|.+.+++...|.|.||+|||||+++|.+.+.+  +.+.+++..+.
T Consensus        22 ~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~   69 (501)
T COG3845          22 DVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVR   69 (501)
T ss_pred             ceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEec
Confidence            37888999999999999999999999999998765  56777776653

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=97.62  E-value=5.7e-05  Score=83.22  Aligned_cols=41  Identities=24%  Similarity=0.376  Sum_probs=33.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKG   54 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~   54 (299)
                      +++.+++|+.++|.||+|||||||+++|++++.+  +.+.+++
T Consensus       445 i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g  487 (1490)
T TIGR01271       445 ISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG  487 (1490)
T ss_pred             eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence            4567889999999999999999999999998764  4444543

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=97.62  E-value=4.1e-05  Score=66.27  Aligned_cols=34  Identities=21%  Similarity=0.327  Sum_probs=28.5

Q ss_pred             hhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         12 KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        12 ~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      ...++.+..++.++|.||||+|||||+|+|+...
T Consensus        16 v~n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          16 VANDIDMEKKNGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             ecceEEEcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            3455667778899999999999999999998744

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=97.62  E-value=0.00078  Score=67.25  Aligned_cols=38  Identities=29%  Similarity=0.411  Sum_probs=30.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc-----CCeecccchhhhhc
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPELLTM   60 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~-----~~~i~i~~~~l~~~   60 (299)
                      .++|||++|+|||+|+++|+..+.     ..++++++.++...
T Consensus       316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~e  358 (617)
T PRK14086        316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNE  358 (617)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHH
Confidence            489999999999999999999763     45678887776543

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.62  E-value=7.8e-05  Score=69.76  Aligned_cols=54  Identities=15%  Similarity=0.166  Sum_probs=37.4

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcC-------Ceecccc----hhhhhccccccHHHHHHHH
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQA-------NFISVKG----PELLTMWFGESEANVRDIF   73 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~-------~~i~i~~----~~l~~~~~g~~~~~i~~~f   73 (299)
                      ..+.++|+||||||||||+++|++.+..       .++.+.+    ..+.....+-....++..|
T Consensus        77 ~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~Pl~l~p~~~r~~~  141 (361)
T smart00763       77 RKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHEDPLHLFPDELREDL  141 (361)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccCCcccCCHHHHHHH
Confidence            4578999999999999999999998875       6666665    3333333333344455544

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=97.60  E-value=5e-05  Score=68.52  Aligned_cols=37  Identities=30%  Similarity=0.460  Sum_probs=32.5

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccch
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGP   55 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~   55 (299)
                      ..+..++|.||+|||||+++++||..++..++.++|.
T Consensus        19 ~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~   55 (262)
T TIGR02640        19 KSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGD   55 (262)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCC
Confidence            3467899999999999999999999999888888664

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=97.60  E-value=5.9e-05  Score=67.83  Aligned_cols=38  Identities=50%  Similarity=0.760  Sum_probs=31.8

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL   57 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l   57 (299)
                      .-..+||+||||.|||||++.||++++.++-..++.-+
T Consensus        51 ~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l   88 (332)
T COG2255          51 ALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL   88 (332)
T ss_pred             CcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc
Confidence            45689999999999999999999999987766655443

>TIGR00763 lon ATP-dependent protease La

Probab=97.57  E-value=8.2e-05  Score=77.00  Aligned_cols=57  Identities=25%  Similarity=0.377  Sum_probs=41.5

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhh---------hccccccHHHHHHHHHHH
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL---------TMWFGESEANVRDIFDKV   76 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~---------~~~~g~~~~~i~~~f~~a   76 (299)
                      .+..++|+||||||||+++++||+.++..++.+++..+.         ..|.|.....+...|..+
T Consensus       346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~  411 (775)
T TIGR00763       346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKA  411 (775)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHh
Confidence            456899999999999999999999999888877543321         234555555555555544

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=97.57  E-value=4.8e-05  Score=70.33  Aligned_cols=40  Identities=23%  Similarity=0.207  Sum_probs=34.8

Q ss_pred             CCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773         18 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL   57 (299)
Q Consensus        18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l   57 (299)
                      +..++.++|.|++||||||+++.||..++..++.|++...
T Consensus        61 l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~  100 (327)
T TIGR01650        61 FAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSH  100 (327)
T ss_pred             HhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCC
Confidence            3457789999999999999999999999999988876544

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=0.00011  Score=69.41  Aligned_cols=47  Identities=17%  Similarity=0.398  Sum_probs=40.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTM   60 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~   60 (299)
                      .++.+++++.+.++|++|+||||++|.|-+-+.  ++.+.+|+.++...
T Consensus       282 isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~v  330 (497)
T COG5265         282 ISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDV  330 (497)
T ss_pred             ccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHh
Confidence            567789999999999999999999999999665  57788898887543

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.55  E-value=7.7e-05  Score=63.01  Aligned_cols=40  Identities=38%  Similarity=0.506  Sum_probs=33.5

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcC----Ceecccchhhhh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQA----NFISVKGPELLT   59 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~----~~i~i~~~~l~~   59 (299)
                      |-..++|+||+|||||.++++||..+..    .++.+|+..+..
T Consensus         2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~   45 (171)
T PF07724_consen    2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE   45 (171)
T ss_dssp             -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc
Confidence            3457899999999999999999999985    788888887765

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.54  E-value=7.3e-05  Score=63.76  Aligned_cols=29  Identities=28%  Similarity=0.495  Sum_probs=25.3

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCe
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANF   49 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~   49 (299)
                      +..++|+||+|||||||+++|+...+..+
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~   30 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQTQL   30 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCeE
Confidence            56799999999999999999999876543

>PLN03232 ABC transporter C family member; Provisional

Probab=97.54  E-value=5.9e-05  Score=83.18  Aligned_cols=35  Identities=26%  Similarity=0.294  Sum_probs=31.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN   48 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~   48 (299)
                      +++.+++|+.++|+||+|||||||+++|.+++...
T Consensus       636 inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~  670 (1495)
T PLN03232        636 INLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA  670 (1495)
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCccc
Confidence            46778999999999999999999999999988653

>PRK06762 hypothetical protein; Provisional

Probab=97.52  E-value=9.7e-05  Score=61.56  Aligned_cols=37  Identities=22%  Similarity=0.320  Sum_probs=30.0

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL   57 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l   57 (299)
                      +..++|.|++||||||+++.|+..++.+.+.++...+
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~   38 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVV   38 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHH
Confidence            4678999999999999999999998666666664443

>PRK04195 replication factor C large subunit; Provisional

Probab=97.52  E-value=8.5e-05  Score=72.80  Aligned_cols=37  Identities=41%  Similarity=0.750  Sum_probs=33.2

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL   57 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l   57 (299)
                      ...++|+||+|+||||+++++|++++..++++++++.
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~   75 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQ   75 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccc
Confidence            6789999999999999999999999988888876653

>PRK13949 shikimate kinase; Provisional

Probab=97.52  E-value=9.8e-05  Score=62.18  Aligned_cols=31  Identities=39%  Similarity=0.585  Sum_probs=28.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANFISVK   53 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~   53 (299)
                      .|+|+|++||||||+++.||..++..++..|
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D   33 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD   33 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence            5899999999999999999999998877766

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=97.51  E-value=0.00016  Score=69.22  Aligned_cols=45  Identities=33%  Similarity=0.558  Sum_probs=37.9

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhh-cccccc
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFGES   65 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~-~~~g~~   65 (299)
                      ...+||+||+|||||+++++||..++.++..+++..+.. .|+|..
T Consensus       116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d  161 (413)
T TIGR00382       116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGED  161 (413)
T ss_pred             CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccccccc
Confidence            358999999999999999999999998888888877653 466654

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=97.49  E-value=2.9e-05  Score=78.58  Aligned_cols=54  Identities=19%  Similarity=0.180  Sum_probs=44.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773        206 SVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       206 sVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .++|+||.|++..+.++.+.+.+   +++|+.|.. +.+-..|+|++||||||||++.
T Consensus       148 ~~~~~di~g~~~~~~~l~~i~~~---~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~  202 (644)
T PRK10733        148 KTTFADVAGCDEAKEEVAELVEY---LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA  202 (644)
T ss_pred             hCcHHHHcCHHHHHHHHHHHHHH---hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHH
Confidence            48899999999999999999988   677876642 2333468999999999999874

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=97.49  E-value=4.1e-05  Score=73.02  Aligned_cols=51  Identities=10%  Similarity=-0.060  Sum_probs=43.0

Q ss_pred             CHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        208 NDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       208 sw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .|+||.|.+.+++.|...+..  +..|+..|...  .-.++|||||||+|||.+.
T Consensus         3 ~f~~IiGq~~~~~~L~~~i~~--~~~~~~~~~~~--l~ha~Lf~Gp~G~GKt~lA   53 (394)
T PRK07940          3 VWDDLVGQEAVVAELRAAARA--ARADVAAAGSG--MTHAWLFTGPPGSGRSVAA   53 (394)
T ss_pred             hhhhccChHHHHHHHHHHHHh--ccccccccCCC--CCeEEEEECCCCCcHHHHH
Confidence            599999999999999999998  77777776543  3467999999999999654

>KOG0927|consensus

Probab=97.48  E-value=0.0004  Score=67.41  Aligned_cols=147  Identities=16%  Similarity=0.175  Sum_probs=81.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCchhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSAL   93 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~~~   93 (299)
                      .+|++.+...+.++||||||||||++.+...+.+....+....-...         . .|..-..    .+ ...+...+
T Consensus       409 l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~---------~-~y~Qh~~----e~-ldl~~s~l  473 (614)
T KOG0927|consen  409 LNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKL---------P-RYNQHLA----EQ-LDLDKSSL  473 (614)
T ss_pred             hhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccc---------h-hhhhhhH----hh-cCcchhHH
Confidence            34678889999999999999999999999998877666653221110         0 1110000    00 00011111


Q ss_pred             hHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH--HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy13773         94 RETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN--YIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAG  171 (299)
Q Consensus        94 ~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~--~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~  171 (299)
                      ...+..+++         ..+.+-...++..+++.  ........+|.||.++|+-.....-..+               
T Consensus       474 e~~~~~~~~---------~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~---------------  529 (614)
T KOG0927|consen  474 EFMMPKFPD---------EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPH---------------  529 (614)
T ss_pred             HHHHHhccc---------cchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCc---------------
Confidence            111111111         12233334566667773  2334457899999998875432221111               


Q ss_pred             CcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773        172 NPAASAAMETEDEDDPVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P  205 (299)
                            .+..+++......-+.+-+.+||+++.-
T Consensus       530 ------lLlLDEPtnhLDi~tid~laeaiNe~~G  557 (614)
T KOG0927|consen  530 ------LLLLDEPTNHLDIETIDALAEAINEFPG  557 (614)
T ss_pred             ------EEEecCCCcCCCchhHHHHHHHHhccCC
Confidence                  1334556666666677778888888753

>PRK03839 putative kinase; Provisional

Probab=97.48  E-value=9.7e-05  Score=62.49  Aligned_cols=31  Identities=26%  Similarity=0.510  Sum_probs=27.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANFISVK   53 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~   53 (299)
                      .|+|+|+|||||||+++.||..++..++.++
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d   32 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT   32 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence            4889999999999999999999998877665

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=97.47  E-value=0.00013  Score=61.51  Aligned_cols=33  Identities=18%  Similarity=0.376  Sum_probs=27.6

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVK   53 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~   53 (299)
                      ++.++|.|+|||||||+++.|+..++..++.++
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~   34 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFG   34 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCccccC
Confidence            568999999999999999999998876555443

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.47  E-value=6.6e-05  Score=60.64  Aligned_cols=23  Identities=43%  Similarity=0.852  Sum_probs=21.8

Q ss_pred             EEEEcCCCChHHHHHHHHHHhhc
Q psy13773         24 VLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        24 vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      |+++|+|||||||+++.++..++
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~~~   24 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKRLG   24 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHST
T ss_pred             EEEECCCCCCHHHHHHHHHHHCC
Confidence            78999999999999999999887

...

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=97.46  E-value=0.00014  Score=61.16  Aligned_cols=53  Identities=23%  Similarity=0.428  Sum_probs=38.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME   79 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~   79 (299)
                      ..+.|+|++|+||||+.|.||..++.+|+..|  .+.....+   ..+..+|..-...
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D--~~Ie~~~g---~sI~eIF~~~GE~   55 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD--QEIEKRTG---MSIAEIFEEEGEE   55 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch--HHHHHHHC---cCHHHHHHHHhHH
Confidence            45899999999999999999999999998776  22222222   3466677654443

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=97.45  E-value=0.0001  Score=63.57  Aligned_cols=33  Identities=24%  Similarity=0.310  Sum_probs=28.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      .++.+.++ .++|+||||+|||||+++|+..++.
T Consensus        16 ~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~   48 (197)
T cd03278          16 TTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGE   48 (197)
T ss_pred             eeeecCCC-cEEEECCCCCCHHHHHHHHHHHhcc
Confidence            45567777 8999999999999999999987753

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=97.45  E-value=0.00012  Score=63.96  Aligned_cols=40  Identities=25%  Similarity=0.355  Sum_probs=32.7

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhc---CCeecccchhhh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELL   58 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~---~~~i~i~~~~l~   58 (299)
                      ..+..++|+||+|||||+++++++....   ..+++++|.++.
T Consensus        36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~   78 (226)
T TIGR03420        36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA   78 (226)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence            4567899999999999999999998763   456778877664

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK06217 hypothetical protein; Validated

Probab=97.45  E-value=0.00012  Score=62.26  Aligned_cols=31  Identities=23%  Similarity=0.384  Sum_probs=27.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANFISVK   53 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~   53 (299)
                      .|+|.|++||||||+++.|+..++..++..|
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D   33 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERLDIPHLDTD   33 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence            4899999999999999999999988777665

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=97.45  E-value=0.00014  Score=61.68  Aligned_cols=36  Identities=28%  Similarity=0.505  Sum_probs=29.2

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL   57 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l   57 (299)
                      .++.++|+|+|||||||++++|++.++..  .+++.++
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~--~i~gd~~   37 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSAK--FIDGDDL   37 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCCE--EECCccc
Confidence            46789999999999999999999988764  4454443

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=97.44  E-value=0.00012  Score=68.02  Aligned_cols=35  Identities=51%  Similarity=0.736  Sum_probs=29.5

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccc
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKG   54 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~   54 (299)
                      +...++|+||+|+|||++++++|.+++..+..+++
T Consensus        50 ~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~   84 (328)
T PRK00080         50 ALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSG   84 (328)
T ss_pred             CCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEec
Confidence            35689999999999999999999999876655544

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.43  E-value=0.00014  Score=71.71  Aligned_cols=34  Identities=38%  Similarity=0.601  Sum_probs=29.4

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      .+.+.++|+||+||||||++++||.+++..+.+.
T Consensus        43 ~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew   76 (519)
T PF03215_consen   43 SPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW   76 (519)
T ss_pred             CCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence            3456888999999999999999999999877665

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.43  E-value=9.1e-05  Score=63.23  Aligned_cols=35  Identities=26%  Similarity=0.439  Sum_probs=30.0

Q ss_pred             hhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         13 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        13 ~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      |..+.+..+..++|.||+||||||++++|++.+..
T Consensus        17 ~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~   51 (186)
T cd01130          17 YLWLAVEARKNILISGGTGSGKTTLLNALLAFIPP   51 (186)
T ss_pred             HHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence            34456788999999999999999999999997754

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=97.43  E-value=0.00015  Score=67.96  Aligned_cols=61  Identities=21%  Similarity=0.316  Sum_probs=47.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHH
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTM   78 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~   78 (299)
                      +++.++.|+.|.|+|.|||||||+++.+-+...  .+.|.+|+..+..+    +...-|.+|.....
T Consensus       342 iNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e----~ledYR~LfSavFs  404 (546)
T COG4615         342 INLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAE----QLEDYRKLFSAVFS  404 (546)
T ss_pred             eeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCC----CHHHHHHHHHHHhh
Confidence            567789999999999999999999999999765  46677787766443    45556666665443

>PF13173 AAA_14: AAA domain

Probab=97.41  E-value=0.00016  Score=57.82  Aligned_cols=37  Identities=27%  Similarity=0.455  Sum_probs=30.7

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhh
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPEL   57 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l   57 (299)
                      ++.++|+||+||||||+++.++..+.  ...+++++.+.
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~   40 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDP   40 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCH
Confidence            46799999999999999999998776  66777776554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	299
1r7r_A	816	The Crystal Structure Of Murine P97VCP AT 3.6A Leng		2e-37
1r7r_A	816	The Crystal Structure Of Murine P97VCP AT 3.6A Leng		8e-36
3cf1_A	806	Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Len		3e-37
3cf1_A	806	Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Len		8e-36
3cf0_A	301	Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH		4e-37
3cf0_A	301	Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH		2e-29
2x8a_A	274	Human Nuclear Valosin Containing Protein Like (Nvl)		9e-20
3h4m_A	285	Aaa Atpase Domain Of The Proteasome- Activating Nuc		5e-18
3hu2_A	489	Structure Of P97 N-D1 R86a Mutant In Complex With A		1e-16
3hu2_A	489	Structure Of P97 N-D1 R86a Mutant In Complex With A		2e-10
3hu3_A	489	Structure Of P97 N-D1 R155h Mutant In Complex With		1e-16
3hu3_A	489	Structure Of P97 N-D1 R155h Mutant In Complex With		2e-10
1e32_A	458	Structure Of The N-Terminal Domain And The D1 Aaa D		1e-16
3hu1_A	489	Structure Of P97 N-D1 R95g Mutant In Complex With A		1e-16
3hu1_A	489	Structure Of P97 N-D1 R95g Mutant In Complex With A		2e-10
4b4t_I	437	Near-Atomic Resolution Structural Model Of The Yeas		3e-15
4b4t_K	428	Near-Atomic Resolution Structural Model Of The Yeas		6e-15
4b4t_H	467	Near-Atomic Resolution Structural Model Of The Yeas		6e-15
4b4t_J	405	Near-Atomic Resolution Structural Model Of The Yeas		7e-15
4b4t_L	437	Near-Atomic Resolution Structural Model Of The Yeas		4e-13
4b4t_M	434	Near-Atomic Resolution Structural Model Of The Yeas		4e-13
2qp9_X	355	Crystal Structure Of S.Cerevisiae Vps4 Length = 355		4e-13
2qz4_A	262	Human Paraplegin, Aaa Domain In Complex With Adp Le		7e-13
3eih_A	340	Crystal Structure Of S.Cerevisiae Vps4 In The Prese		7e-13
2rko_A	331	Crystal Structure Of The Vps4p-Dimer Length = 331		8e-13
3eie_A	322	Crystal Structure Of S.Cerevisiae Vps4 In The So4-B		8e-13
2r62_A	268	Crystal Structure Of Helicobacter Pylori Atp Depend		5e-12
1lv7_A	257	Crystal Structure Of The Aaa Domain Of Ftsh Length		6e-12
1iy2_A	278	Crystal Structure Of The Ftsh Atpase Domain From Th		3e-11
2dhr_A	499	Whole Cytosolic Region Of Atp-Dependent Metalloprot		3e-11
4eiw_A	508	Whole Cytosolic Region Of Atp-Dependent Metalloprot		3e-11
1ixz_A	254	Crystal Structure Of The Ftsh Atpase Domain From Th		3e-11
3b9p_A	297	Spastin Length = 297		7e-11
2ce7_A	476	Edta Treated Length = 476		9e-11
3d8b_A	357	Crystal Structure Of Human Fidgetin-Like Protein 1		1e-10
3vfd_A	389	Human Spastin Aaa Domain Length = 389		2e-10
2zam_A	444	Crystal Structure Of Mouse Skd1VPS4B APO-Form Lengt		2e-10
1xwi_A	322	Crystal Structure Of Vps4b Length = 322		3e-10
3kds_E	465	Apo-ftsh Crystal Structure Length = 465		4e-10
2c9o_A	456	3d Structure Of The Human Ruvb-Like Helicase Ruvbl1		5e-05
2xsz_A	367	The Dodecameric Human Ruvbl1:ruvbl2 Complex With Tr		4e-04
1in5_A	334	Thermogota Maritima Ruvb A156s Mutant Length = 334		8e-04
1in4_A	334	Thermotoga Maritima Ruvb Holliday Junction Branch M		8e-04
1j7k_A	334	Thermotoga Maritima Ruvb P216g Mutant Length = 334		8e-04
1in7_A	334	Thermotoga Maritima Ruvb R170a Length = 334		8e-04
1in8_A	334	Thermotoga Maritima Ruvb T158v Length = 334		8e-04

>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A Length = 816

Iteration: 1
 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 66/74 (89%), Positives = 71/74 (95%)
Query: 2   ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 61
           +  YPVEHP+KFLKFGM PS+GVLFYGPPGCGKTLLAKAIANECQANFIS+KGPELLTMW
Sbjct: 492 LVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 551
Query: 62  FGESEANVRDIFDK 75
           FGESEANVR+IFDK
Sbjct: 552 FGESEANVREIFDK 565

>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A Length = 816

Iteration: 1
 Score =  147 bits (370), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 86/116 (74%), Positives = 97/116 (83%), Gaps = 6/116 (5%)
Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAME 180
           + +DVDL ++AK+TNGFSGADLTEICQRACKLAIR+SIE+E  R   +   NP+A   ME
Sbjct: 666 VAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESE-IRRERERQTNPSA---ME 721
Query: 181 TEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPS 236
            E EDDPVPEI R HFEEAMRFARRSV+D DIRKYEMFAQTLQQSRGFG+ FRFPS
Sbjct: 722 VE-EDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPS 775

>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Length = 806

Iteration: 1
 Score =  152 bits (383), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 66/74 (89%), Positives = 71/74 (95%)
Query: 2   ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 61
           +  YPVEHP+KFLKFGM PS+GVLFYGPPGCGKTLLAKAIANECQANFIS+KGPELLTMW
Sbjct: 492 LVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 551
Query: 62  FGESEANVRDIFDK 75
           FGESEANVR+IFDK
Sbjct: 552 FGESEANVREIFDK 565

>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Length = 806

Iteration: 1
 Score =  147 bits (370), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 86/116 (74%), Positives = 97/116 (83%), Gaps = 6/116 (5%)
Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAME 180
           + +DVDL ++AK+TNGFSGADLTEICQRACKLAIR+SIE+E  R   +   NP+A   ME
Sbjct: 666 VAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESE-IRRERERQTNPSA---ME 721
Query: 181 TEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPS 236
            E EDDPVPEI R HFEEAMRFARRSV+D DIRKYEMFAQTLQQSRGFG+ FRFPS
Sbjct: 722 VE-EDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPS 775

>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP Length = 301

Iteration: 1
 Score =  151 bits (381), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 66/74 (89%), Positives = 71/74 (95%)
Query: 2   ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 61
           +  YPVEHP+KFLKFGM PS+GVLFYGPPGCGKTLLAKAIANECQANFIS+KGPELLTMW
Sbjct: 30  LVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 89
Query: 62  FGESEANVRDIFDK 75
           FGESEANVR+IFDK
Sbjct: 90  FGESEANVREIFDK 103

>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP Length = 301

Iteration: 1
 Score =  126 bits (316), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 78/103 (75%), Gaps = 5/103 (4%)
Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAME 180
           + +DVDL ++AK+TNGFSGADLTEICQRACKLA  +       R   +   NP   +AME
Sbjct: 204 VAKDVDLEFLAKMTNGFSGADLTEICQRACKLA-IRESIESEIRRERERQTNP---SAME 259
Query: 181 TEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQ 223
            E EDDPVPEI R HFEEAMRFARRSV+D DIRKYEMFAQTLQ
Sbjct: 260 VE-EDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 301

>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C- Terminal Aaa-Atpase Domain Length = 274

Iteration: 1
 Score = 94.0 bits (232), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 44/75 (58%), Positives = 52/75 (69%)
Query: 1  MISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 60
          M    PV +P++F   G+    GVL  GPPGCGKTLLAKA+ANE   NFISVKGPELL M
Sbjct: 24 MAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83
Query: 61 WFGESEANVRDIFDK 75
          + GESE  VR +F +
Sbjct: 84 YVGESERAVRQVFQR 98

>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase Length = 285

Iteration: 1
 Score = 88.2 bits (217), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 74/129 (57%), Gaps = 15/129 (11%)
Query: 2   ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 61
           +   P++HPE F K G++P +G+L YGPPG GKTLLAKA+A E  A FI V G EL+  +
Sbjct: 32  VVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKF 91
Query: 62  FGESEANVRDIFDKVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEG----VKRE 117
            GE  + V+DIF K+  E         +PS +   I E+  I  +    L G    V+R 
Sbjct: 92  IGEGASLVKDIF-KLAKEK--------APSII--FIDEIDAIAAKRTDALTGGDREVQRT 140
Query: 118 LQELVQDVD 126
           L +L+ ++D
Sbjct: 141 LMQLLAEMD 149

>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 50/71 (70%)
Query: 5   YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
            P+ HP  F   G++P RG+L YGPPG GKTL+A+A+ANE  A F  + GPE+++   GE
Sbjct: 222 LPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 281
Query: 65  SEANVRDIFDK 75
           SE+N+R  F++
Sbjct: 282 SESNLRKAFEE 292

>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 25/35 (71%), Positives = 33/35 (94%)
Query: 76  VTMENFRYAMGKSSPSALRETIVEVPNITWEDIGG 110
           VTM++FR+A+ +S+PSALRET+VEVP +TWEDIGG
Sbjct: 447 VTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481

>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 50/71 (70%)
Query: 5   YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
            P+ HP  F   G++P RG+L YGPPG GKTL+A+A+ANE  A F  + GPE+++   GE
Sbjct: 222 LPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 281
Query: 65  SEANVRDIFDK 75
           SE+N+R  F++
Sbjct: 282 SESNLRKAFEE 292

>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 25/35 (71%), Positives = 33/35 (94%)
Query: 76  VTMENFRYAMGKSSPSALRETIVEVPNITWEDIGG 110
           VTM++FR+A+ +S+PSALRET+VEVP +TWEDIGG
Sbjct: 447 VTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481

>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain Of Membrane Fusion Atpase P97 Length = 458

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 50/71 (70%)
Query: 5   YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
            P+ HP  F   G++P RG+L YGPPG GKTL+A+A+ANE  A F  + GPE+++   GE
Sbjct: 222 LPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 281
Query: 65  SEANVRDIFDK 75
           SE+N+R  F++
Sbjct: 282 SESNLRKAFEE 292

>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 50/71 (70%)
Query: 5   YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
            P+ HP  F   G++P RG+L YGPPG GKTL+A+A+ANE  A F  + GPE+++   GE
Sbjct: 222 LPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 281
Query: 65  SEANVRDIFDK 75
           SE+N+R  F++
Sbjct: 282 SESNLRKAFEE 292

>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 25/35 (71%), Positives = 33/35 (94%)
Query: 76  VTMENFRYAMGKSSPSALRETIVEVPNITWEDIGG 110
           VTM++FR+A+ +S+PSALRET+VEVP +TWEDIGG
Sbjct: 447 VTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481

>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 88/207 (42%), Gaps = 57/207 (27%)
Query: 6   PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
           P+ HPE + + G++P +GV+ YG PG GKTLLAKA+AN+  A F+ + G EL+  + G+ 
Sbjct: 201 PLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDG 260
Query: 66  EANVRDIFDKVTMENF---------------RYAMGKSSPSALRETIVEVPNIT--WEDI 108
               R IF KV  EN                RY         ++ T++E+ N    ++D 
Sbjct: 261 PRLCRQIF-KVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR 319
Query: 109 GGLE---------------------------------------GVKRELQELVQDVDLNY 129
           G ++                                       G+      L +DV+L  
Sbjct: 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLET 379
Query: 130 IAKVTNGFSGADLTEICQRACKLAIRQ 156
           +    +  SGAD+  +C  A  LA+R+
Sbjct: 380 LVTTKDDLSGADIQAMCTEAGLLALRE 406

>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 428

Iteration: 1
 Score = 78.2 bits (191), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 6   PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
           P+   + + + G+ P RGVL YGPPG GKT+L KA+AN  +A FI V G E +  + GE 
Sbjct: 191 PLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEG 250
Query: 66  EANVRDIFDKVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELV 122
              VRD+F ++  EN        +PS +   I EV +I  +      G  RE+Q ++
Sbjct: 251 PRMVRDVF-RLAREN--------APSII--FIDEVDSIATKRFDAQTGSDREVQRIL 296

>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 467

Iteration: 1
 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 66/126 (52%), Gaps = 9/126 (7%)
Query: 2   ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 61
           +   P+  PE+F   G+ P +G+L YGPPG GKTL A+A+AN   A FI V G EL+  +
Sbjct: 224 VVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKY 283
Query: 62  FGESEANVRDIFDKVTMENFRYAMGKSSPSALRETIVEVPNITWED-IGGLEGVKRELQE 120
            GE    VR++F+         A  K +     + I  V    ++D  GG   V+R + E
Sbjct: 284 VGEGARMVRELFE--------MARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLE 335
Query: 121 LVQDVD 126
           L+  +D
Sbjct: 336 LITQLD 341

>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 405

Iteration: 1
 Score = 77.8 bits (190), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 44/68 (64%)
Query: 6   PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
           PV+HPE F   G+   +GV+ YGPPG GKTLLA+A+A+     FI V G EL+  + GE 
Sbjct: 167 PVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEG 226
Query: 66  EANVRDIF 73
              VR++F
Sbjct: 227 SRMVRELF 234

>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 46/68 (67%)
Query: 6   PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
           P+++PE F + G++P +GVL YGPPG GKTLLAKA+A    ANFI      ++  + GES
Sbjct: 200 PLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGES 259
Query: 66  EANVRDIF 73
              +R++F
Sbjct: 260 ARIIREMF 267

>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 434

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 43/70 (61%)
Query: 4   TYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 63
             P++  +KF   G++  +G L YGPPG GKTLLA+A A +  A F+ +  P+L+ M+ G
Sbjct: 198 VLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIG 257
Query: 64  ESEANVRDIF 73
           E    VRD F
Sbjct: 258 EGAKLVRDAF 267

>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4 Length = 355

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 6   PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
           PV+ P  F K   +P+ G+L YGPPG GK+ LAKA+A E  + F SV   +L++ W GES
Sbjct: 70  PVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 128
Query: 66  EANVRDIF 73
           E  V+ +F
Sbjct: 129 EKLVKQLF 136

>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp Length = 262

Iteration: 1
 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 44/67 (65%)
Query: 7  VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 66
          ++ PE+FL+ G +  +G L  GPPGCGKTLLAKA+A E Q  F+++ G E + +  G   
Sbjct: 25 LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGA 84
Query: 67 ANVRDIF 73
          A VR +F
Sbjct: 85 ARVRSLF 91

>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of Atpgammas Length = 340

Iteration: 1
 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 6   PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
           PV+ P  F K   +P+ G+L YGPPG GK+ LAKA+A E  + F SV   +L++ W GES
Sbjct: 55  PVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 113
Query: 66  EANVRDIF 73
           E  V+ +F
Sbjct: 114 EKLVKQLF 121

>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer Length = 331

Iteration: 1
 Score = 70.9 bits (172), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 6   PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
           PV+ P  F K   +P+ G+L YGPPG GK+ LAKA+A E  + F SV   +L++ W GES
Sbjct: 46  PVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 104
Query: 66  EANVRDIF 73
           E  V+ +F
Sbjct: 105 EKLVKQLF 112

>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound State Length = 322

Iteration: 1
 Score = 70.9 bits (172), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 6   PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
           PV+ P  F K   +P+ G+L YGPPG GK+ LAKA+A E  + F SV   +L++ W GES
Sbjct: 37  PVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 95
Query: 66  EANVRDIF 73
           E  V+ +F
Sbjct: 96  EKLVKQLF 103

>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh Length = 268

Iteration: 1
 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 43/68 (63%)
Query: 7  VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 66
          +++PE++   G +  +GVL  GPPG GKTLLAKA+A E    F S+ G   + M+ G   
Sbjct: 30 LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGA 89
Query: 67 ANVRDIFD 74
          + VRD+F+
Sbjct: 90 SRVRDLFE 97

>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh Length = 257

Iteration: 1
 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 44/69 (63%)
Query: 7  VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 66
          +  P +F K G +  +GVL  GPPG GKTLLAKAIA E +  F ++ G + + M+ G   
Sbjct: 31 LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGA 90
Query: 67 ANVRDIFDK 75
          + VRD+F++
Sbjct: 91 SRVRDMFEQ 99

>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 278

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 44/68 (64%)
Query: 7   VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 66
           +++P +F + G +  +GVL  GPPG GKT LA+A+A E +  FI+  G + + M+ G   
Sbjct: 59  LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 118
Query: 67  ANVRDIFD 74
           A VRD+F+
Sbjct: 119 ARVRDLFE 126

>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 499

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 44/68 (64%)
Query: 7   VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 66
           +++P +F + G +  +GVL  GPPG GKT LA+A+A E +  FI+  G + + M+ G   
Sbjct: 50  LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 109
Query: 67  ANVRDIFD 74
           A VRD+F+
Sbjct: 110 ARVRDLFE 117

>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 508

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 44/68 (64%)
Query: 7   VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 66
           +++P +F + G +  +GVL  GPPG GKT LA+A+A E +  FI+  G + + M+ G   
Sbjct: 59  LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 118
Query: 67  ANVRDIFD 74
           A VRD+F+
Sbjct: 119 ARVRDLFE 126

>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 254

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 44/68 (64%)
Query: 7   VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 66
           +++P +F + G +  +GVL  GPPG GKT LA+A+A E +  FI+  G + + M+ G   
Sbjct: 35  LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 94
Query: 67  ANVRDIFD 74
           A VRD+F+
Sbjct: 95  ARVRDLFE 102

>pdb|3B9P|A Chain A, Spastin Length = 297

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 6   PVEHPEKFLKFGMQ-PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
           P   PE F   G++ P++G+L +GPPG GKTLLA+A+A EC A F+++    L + + G+
Sbjct: 40  PSVRPELFT--GLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGD 97
Query: 65  SEANVRDIF 73
            E  VR +F
Sbjct: 98  GEKLVRALF 106

>pdb|2CE7|A Chain A, Edta Treated Length = 476

Iteration: 1
 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 41/67 (61%)
Query: 7   VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 66
           ++ P KF + G +  +G+L  GPPG GKTLLA+A+A E    F  + G + + ++ G   
Sbjct: 35  LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGA 94
Query: 67  ANVRDIF 73
           A VRD+F
Sbjct: 95  ARVRDLF 101

>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In Complex With Adp Length = 357

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 2   ISTYPVEHPEKFLKFGMQ-PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 60
           I  +P+  P+ F   G++ P +G+L +GPPG GKTL+ K IA++  A F S+    L + 
Sbjct: 99  IVVWPMLRPDIFT--GLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156
Query: 61  WFGESEANVRDIF 73
           W GE E  VR +F
Sbjct: 157 WVGEGEKMVRALF 169

>pdb|3VFD|A Chain A, Human Spastin Aaa Domain Length = 389

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 2   ISTYPVEHPEKFLKFGMQ-PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 60
           I   P   PE F   G++ P+RG+L +GPPG GKT+LAKA+A E  A F ++    L + 
Sbjct: 130 IVILPSLRPELFT--GLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSK 187
Query: 61  WFGESEANVRDIF 73
           + GE E  VR +F
Sbjct: 188 YVGEGEKLVRALF 200

>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form Length = 444

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 6   PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC-QANFISVKGPELLTMWFGE 64
           P++ P  F      P RG+L +GPPG GK+ LAKA+A E   + F S+   +L++ W GE
Sbjct: 153 PIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGE 211
Query: 65  SEANVRDIF 73
           SE  V+++F
Sbjct: 212 SEKLVKNLF 220

>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b Length = 322

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 5  YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC-QANFISVKGPELLTMWFG 63
           P++ P  F      P RG+L +GPPG GK+ LAKA+A E   + F S+   +L++ W G
Sbjct: 30 LPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLG 88
Query: 64 ESEANVRDIF 73
          ESE  V+++F
Sbjct: 89 ESEKLVKNLF 98

>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure Length = 465

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 7   VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 66
           ++ P KF + G +  +G+L  GPPG G TLLA+A+A E    F  + G + + ++ G   
Sbjct: 35  LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVELFVGVGA 94
Query: 67  ANVRDIF 73
           A VRD+F
Sbjct: 95  ARVRDLF 101

>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1 Length = 456

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 13  FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC--QANFISVKGPELLTMWFGESEANVR 70
            +K      R VL  GPPG GKT LA AIA E   +  F  + G E+ +    ++E    
Sbjct: 55  LIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE---- 110
Query: 71  DIFDKVTMENFRYAMG 86
                V MENFR A+G
Sbjct: 111 -----VLMENFRRAIG 121

>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated Domains Ii Length = 367

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Query: 13  FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC--QANFISVKGPELLTMWFGESEANVR 70
            +K      R VL  GPPG GKT LA AIA E   +  F    G E+ +    ++E    
Sbjct: 69  LIKSKKXAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTE---- 124
Query: 71  DIFDKVTMENFRYAMG 86
                V  ENFR A+G
Sbjct: 125 -----VLXENFRRAIG 135

>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant Length = 334

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 21/35 (60%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 58
          VL  GPPG GKT LA  IA+E Q N     GP L+
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV 88

>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch Migration Motor Length = 334

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 21/35 (60%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 58
          VL  GPPG GKT LA  IA+E Q N     GP L+
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV 88

>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant Length = 334

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 21/35 (60%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 58
          VL  GPPG GKT LA  IA+E Q N     GP L+
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV 88

>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a Length = 334

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 21/35 (60%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 58
          VL  GPPG GKT LA  IA+E Q N     GP L+
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV 88

>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v Length = 334

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 21/35 (60%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 58
          VL  GPPG GKT LA  IA+E Q N     GP L+
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV 88

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	299
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	6e-50
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	2e-19
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	4e-09
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	2e-49
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	2e-31
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	2e-12
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	7e-43
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	9e-34
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	1e-26
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	1e-16
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	2e-10
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	2e-06
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	2e-36
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	8e-27
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	8e-10
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	9e-33
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	8e-24
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	8e-08
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	2e-31
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	1e-05
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	5e-31
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	3e-05
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	2e-04
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	4e-30
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	3e-17
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	6e-10
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	1e-05
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	6e-29
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	8e-26
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	1e-10
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	9e-28
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	1e-14
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	2e-07
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	1e-26
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	2e-14
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	7e-07
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	2e-25
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	7e-14
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	4e-08
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	9e-25
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	1e-21
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	1e-08
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	2e-22
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-16
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	6e-16
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	8e-16
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	3e-04
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	8e-16
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	2e-04
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	1e-15
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	3e-04
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	3e-15
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	4e-04
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	1e-13
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	6e-04
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	2e-13
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	8e-04
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	2e-08
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	2e-07
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	4e-07
3pvs_A	447	Replication-associated recombination protein A; ma	5e-07
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	6e-07
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	7e-07
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	7e-07
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	9e-07
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	1e-06
2krk_A	86	26S protease regulatory subunit 8; structural geno	1e-06
2dzn_B	82	26S protease regulatory subunit 6B homolog; ankyri	1e-06
3vlf_B	88	26S protease regulatory subunit 7 homolog; heat re	2e-06
2qgz_A	308	Helicase loader, putative primosome component; str	2e-06
3kw6_A	78	26S protease regulatory subunit 8; structural geno	2e-06
3aji_B	83	S6C, proteasome (prosome, macropain) 26S subunit,	2e-06
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	2e-05
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	3e-05
2chg_A	226	Replication factor C small subunit; DNA-binding pr	4e-05
2chq_A	319	Replication factor C small subunit; DNA-binding pr	6e-05
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	6e-05
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	6e-04

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274

 Score =  165 bits (421), Expect = 6e-50
 Identities = 43/71 (60%), Positives = 51/71 (71%)

Query: 5  YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
           PV +P++F   G+    GVL  GPPGCGKTLLAKA+ANE   NFISVKGPELL M+ GE
Sbjct: 28 APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGE 87

Query: 65 SEANVRDIFDK 75
          SE  VR +F +
Sbjct: 88 SERAVRQVFQR 98

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274

 Score = 84.5 bits (210), Expect = 2e-19
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 21/93 (22%)

Query: 121 LVQDVDLNYIAK--VTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAA 178
           L  DV+L  IA     + ++GADL+ + + A   A+RQ +                    
Sbjct: 199 LDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMAR------------------ 240

Query: 179 METEDEDDPVPEITRAHFEEAMRFARRSVNDAD 211
            +    +    +++  HFEEA +  R S++  D
Sbjct: 241 -QKSGNEKGELKVSHKHFEEAFKKVRSSISKKD 272

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274

 Score = 55.6 bits (135), Expect = 4e-09
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 98  VEVPNITWEDIGGLEGVKRELQELVQ 123
           + VPN+TW DIG LE ++ EL   + 
Sbjct: 2   MTVPNVTWADIGALEDIREELTMAIL 27

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301

 Score =  165 bits (419), Expect = 2e-49
 Identities = 66/71 (92%), Positives = 70/71 (98%)

Query: 5   YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
           YPVEHP+KFLKFGM PS+GVLFYGPPGCGKTLLAKAIANECQANFIS+KGPELLTMWFGE
Sbjct: 33  YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 92

Query: 65  SEANVRDIFDK 75
           SEANVR+IFDK
Sbjct: 93  SEANVREIFDK 103

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301

 Score =  117 bits (296), Expect = 2e-31
 Identities = 75/103 (72%), Positives = 85/103 (82%), Gaps = 5/103 (4%)

Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAME 180
           + +DVDL ++AK+TNGFSGADLTEICQRACKLAIR+SIE+EIRRERE+     A      
Sbjct: 204 VAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSA-----M 258

Query: 181 TEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQ 223
             +EDDPVPEI R HFEEAMRFARRSV+D DIRKYEMFAQTLQ
Sbjct: 259 EVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 301

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 28/32 (87%), Positives = 30/32 (93%)

Query: 92  ALRETIVEVPNITWEDIGGLEGVKRELQELVQ 123
           ALRET+VEVP +TWEDIGGLE VKRELQELVQ
Sbjct: 1   ALRETVVEVPQVTWEDIGGLEDVKRELQELVQ 32

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322

 Score =  132 bits (333), Expect = 2e-36
 Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 5   YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
            PV+ P  F K   +P+ G+L YGPPG GK+ LAKA+A E  + F SV   +L++ W GE
Sbjct: 36  LPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGE 94

Query: 65  SEANVRDIFDK 75
           SE  V+ +F  
Sbjct: 95  SEKLVKQLFAM 105

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322

 Score =  105 bits (265), Expect = 8e-27
 Identities = 22/115 (19%), Positives = 45/115 (39%), Gaps = 13/115 (11%)

Query: 124 DVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNP---------- 173
             D   +  +T G+SG+D+  + + A    IR+       ++                  
Sbjct: 206 KEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGD 265

Query: 174 ---AASAAMETEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQS 225
                 +  + E ++   P++T   F +A++  R +VN+ D+ K E F +   Q 
Sbjct: 266 DGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 320

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322

 Score = 57.7 bits (140), Expect = 8e-10
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 93  LRETIVEVPNITWEDIGGLEGVKRELQELVQ 123
               + E PN+ WED+ GLEG K  L+E V 
Sbjct: 5   FTAILSEKPNVKWEDVAGLEGAKEALKEAVI 35

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322

 Score =  122 bits (307), Expect = 9e-33
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 5   YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-ANFISVKGPELLTMWFG 63
            P++ P  F      P RG+L +GPPG GK+ LAKA+A E   + F S+   +L++ W G
Sbjct: 30  LPIKFPHLF-TGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLG 88

Query: 64  ESEANVRDIFDK 75
           ESE  V+++F  
Sbjct: 89  ESEKLVKNLFQL 100

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322

 Score = 97.8 bits (244), Expect = 8e-24
 Identities = 17/116 (14%), Positives = 43/116 (37%), Gaps = 19/116 (16%)

Query: 124 DVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAA----- 178
           + D   + + T+G+SGAD++ I + A    +R+       ++    +             
Sbjct: 201 EADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLT 260

Query: 179 --------------METEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQ 220
                         M+   +    P ++ +    ++   + +VN+ D+ K + F +
Sbjct: 261 PCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTE 316

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322

 Score = 51.6 bits (124), Expect = 8e-08
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 97  IVEVPNITWEDIGGLEGVKRELQELVQ 123
           ++E PN+ W D+ GLEG K  L+E V 
Sbjct: 3   VIERPNVKWSDVAGLEGAKEALKEAVI 29

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293

 Score =  117 bits (296), Expect = 2e-31
 Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 1/82 (1%)

Query: 5   YPVEHPEKFLKF-GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 63
             V   + FLK   ++    +  +G  G GK+   + +  +   N I +   EL +   G
Sbjct: 19  LVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAG 78

Query: 64  ESEANVRDIFDKVTMENFRYAM 85
           E    +R  + +      +  M
Sbjct: 79  EPAKLIRQRYREAAEIIRKGNM 100

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 15/84 (17%)

Query: 124 DVDLNYIAKVTNGFSGADLTEIC---QRACKLAIRQSIETEIRREREKLAGNPAASAAME 180
           +V    + K+ + F G  +        R     +R+ +      +             + 
Sbjct: 202 NVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGD---------KLL 252

Query: 181 TEDEDDPV---PEITRAHFEEAMR 201
              +  P    P++T     E   
Sbjct: 253 NSFDGPPTFEQPKMTIEKLLEYGN 276

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285

 Score =  116 bits (292), Expect = 5e-31
 Identities = 38/69 (55%), Positives = 49/69 (71%)

Query: 6   PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
           P++HPE F K G++P +G+L YGPPG GKTLLAKA+A E  A FI V G EL+  + GE 
Sbjct: 36  PLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEG 95

Query: 66  EANVRDIFD 74
            + V+DIF 
Sbjct: 96  ASLVKDIFK 104

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 18/35 (51%), Positives = 22/35 (62%)

Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIR 155
           L +DV+L  IAK+T G  GA+L  IC  A   AIR
Sbjct: 206 LAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIR 240

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 13/27 (48%), Positives = 20/27 (74%)

Query: 96  TIVEVPNITWEDIGGLEGVKRELQELV 122
            + E PN+ +EDIGGLE   +E++E+V
Sbjct: 7   EVDERPNVRYEDIGGLEKQMQEIREVV 33

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489

 Score =  117 bits (295), Expect = 4e-30
 Identities = 35/70 (50%), Positives = 50/70 (71%)

Query: 6   PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
           P+ HP  F   G++P RG+L YGPPG GKTL+A+A+ANE  A F  + GPE+++   GES
Sbjct: 223 PLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGES 282

Query: 66  EANVRDIFDK 75
           E+N+R  F++
Sbjct: 283 ESNLRKAFEE 292

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489

 Score = 80.6 bits (199), Expect = 3e-17
 Identities = 25/41 (60%), Positives = 33/41 (80%)

Query: 75  KVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVK 115
            VTM++FR+A+ +S+PSALRET+VEVP +TWEDIGG     
Sbjct: 446 AVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSHHH 486

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489

 Score = 58.7 bits (142), Expect = 6e-10
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 13/81 (16%)

Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAME 180
           L  DVDL  +A  T+G  GADL  +C  A   AIR+ ++  I  E E +      S    
Sbjct: 390 LADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD-LIDLEDETIDAEVMNS---- 444

Query: 181 TEDEDDPVPEITRAHFEEAMR 201
                     +T   F  A+ 
Sbjct: 445 --------LAVTMDDFRWALS 457

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 7/49 (14%), Positives = 18/49 (36%)

Query: 74  DKVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELV 122
               +        +  P    +    +  + ++DIGG      +++E+V
Sbjct: 172 PYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMV 220

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Length = 355

 Score =  112 bits (281), Expect = 6e-29
 Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 5   YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
            PV+ P  F K   +P+ G+L YGPPG GK+ LAKA+A E  + F SV   +L++ W GE
Sbjct: 69  LPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGE 127

Query: 65  SEANVRDIFDK 75
           SE  V+ +F  
Sbjct: 128 SEKLVKQLFAM 138

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Length = 355

 Score =  103 bits (259), Expect = 8e-26
 Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 13/123 (10%)

Query: 116 RELQELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGN--- 172
            +   ++   D   +  +T G+SG+D+  + + A    IR+       ++          
Sbjct: 231 GDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRK 290

Query: 173 ----------PAASAAMETEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTL 222
                         +  + E ++   P++T   F +A++  R +VN+ D+ K E F +  
Sbjct: 291 LTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDF 350

Query: 223 QQS 225
            Q 
Sbjct: 351 GQE 353

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Length = 355

 Score = 60.2 bits (146), Expect = 1e-10
 Identities = 18/61 (29%), Positives = 26/61 (42%)

Query: 63  GESEANVRDIFDKVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELV 122
             S    + I  +   +N      K   +     + E PN+ WED+ GLEG K  L+E V
Sbjct: 8   SGSNGGNKKISQEEGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAV 67

Query: 123 Q 123
            
Sbjct: 68  I 68

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297

 Score =  108 bits (271), Expect = 9e-28
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 5   YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
            P   PE F      P++G+L +GPPG GKTLLA+A+A EC A F+++    L + + G+
Sbjct: 39  LPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGD 97

Query: 65  SEANVRDIFDK 75
            E  VR +F  
Sbjct: 98  GEKLVRALFAV 108

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297

 Score = 71.6 bits (176), Expect = 1e-14
 Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 18/97 (18%)

Query: 124 DVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETED 183
              L  +AK+T+G+SG+DLT + + A    IR+    +++                    
Sbjct: 211 TEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVK------------------CL 252

Query: 184 EDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQ 220
           +   +  IT   F  +++  RRSV    +  YE ++Q
Sbjct: 253 DISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQ 289

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 90  PSALRETIVEVPNITWEDIGGLEGVKRELQELV 122
              L E +     + W DI G +  K+ LQE+V
Sbjct: 5   QLILDEIVEGGAKVEWTDIAGQDVAKQALQEMV 37

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357

 Score =  106 bits (265), Expect = 1e-26
 Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 5   YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
           +P+  P+ F      P +G+L +GPPG GKTL+ K IA++  A F S+    L + W GE
Sbjct: 102 WPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGE 160

Query: 65  SEANVRDIFDK 75
            E  VR +F  
Sbjct: 161 GEKMVRALFAV 171

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357

 Score = 71.7 bits (176), Expect = 2e-14
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 18/97 (18%)

Query: 124 DVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETED 183
           + ++  I + ++ FSGAD+T++C+ A    IR     +I                     
Sbjct: 273 EEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADI------------------ATI 314

Query: 184 EDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQ 220
             D V  I    FE A R  R SV+  D+  YE + +
Sbjct: 315 TPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNK 351

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357

 Score = 49.0 bits (117), Expect = 7e-07
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 93  LRETIVEVPNITWEDIGGLEGVKRELQELV 122
           + E +   P + WEDI G+E  K  ++E+V
Sbjct: 71  MNEIMDHGPPVNWEDIAGVEFAKATIKEIV 100

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389

 Score =  103 bits (258), Expect = 2e-25
 Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 5   YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
            P   PE F      P+RG+L +GPPG GKT+LAKA+A E  A F ++    L + + GE
Sbjct: 133 LPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGE 191

Query: 65  SEANVRDIFDK 75
            E  VR +F  
Sbjct: 192 GEKLVRALFAV 202

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389

 Score = 70.2 bits (172), Expect = 7e-14
 Identities = 19/97 (19%), Positives = 42/97 (43%), Gaps = 18/97 (18%)

Query: 124 DVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETED 183
             +L  +A++T+G+SG+DLT + + A    IR+    +++                    
Sbjct: 304 QKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVK------------------NM 345

Query: 184 EDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQ 220
               +  I  + F E+++  +RSV+   +  Y  + +
Sbjct: 346 SASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNK 382

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389

 Score = 52.9 bits (127), Expect = 4e-08
 Identities = 13/48 (27%), Positives = 24/48 (50%)

Query: 75  KVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELV 122
           K  ++NFR      +   + E +     + ++DI G +  K+ LQE+V
Sbjct: 84  KKDLKNFRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIV 131

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Length = 444

 Score =  102 bits (255), Expect = 9e-25
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 5   YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-ANFISVKGPELLTMWFG 63
            P++ P  F      P RG+L +GPPG GK+ LAKA+A E   + F S+   +L++ W G
Sbjct: 152 LPIKFPHLF-TGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLG 210

Query: 64  ESEANVRDIFDK 75
           ESE  V+++F  
Sbjct: 211 ESEKLVKNLFQL 222

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Length = 444

 Score = 93.5 bits (232), Expect = 1e-21
 Identities = 17/116 (14%), Positives = 42/116 (36%), Gaps = 19/116 (16%)

Query: 124 DVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAA----- 178
           + D   + + T+G+SGAD++ I + A    +R+       ++    +             
Sbjct: 323 EADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLT 382

Query: 179 --------------METEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQ 220
                         M+   +    P ++      ++   + +VN+ D+ K + F +
Sbjct: 383 PCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTE 438

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Length = 444

 Score = 54.6 bits (131), Expect = 1e-08
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 84  AMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQ 123
              K         ++E PN+ W D+ GLEG K  L+E V 
Sbjct: 112 EKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVI 151

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Length = 272

 Score = 93.3 bits (232), Expect = 2e-22
 Identities = 32/121 (26%), Positives = 45/121 (37%), Gaps = 23/121 (19%)

Query: 6   PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
            V+  +   +    P   VL  GPP  GKT LA  IA E    FI +  P+ +  +   +
Sbjct: 52  LVQQTKNSDRT---PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETA 108

Query: 66  EAN-VRDIFDKVTMENFRYAMGKSSPSALRETIVEVPNI----TWEDIGGLEGVKRELQE 120
           +   ++ IFD            KS  S      V V +I     +  IG        LQ 
Sbjct: 109 KCQAMKKIFDDAY---------KSQLS-----CVVVDDIERLLDYVPIGP-RFSNLVLQA 153

Query: 121 L 121
           L
Sbjct: 154 L 154

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 78.0 bits (191), Expect = 3e-16
 Identities = 46/272 (16%), Positives = 90/272 (33%), Gaps = 72/272 (26%)

Query: 2   ISTYPVEHPEKFLK-----FGMQPSRGVLFYGPPGCGKTLLAKAIAN----ECQANF--- 49
            + Y V   + +LK       ++P++ VL  G  G GKT +A  +      +C+ +F   
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Query: 50  -ISV---KGPE-----LLTMWF---------GESEANVRDIFDKVTMENFRYAMGKSSPS 91
            +++     PE     L  + +          +  +N++     +  E  R    K   +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 92  ALRETIV--EV--PNITWE--DIGGLEGVKRELQELV--QDVDLNYIAKVTNGFSGADLT 143
            L   +V   V      W   ++          + L+  +        +VT+  S A  T
Sbjct: 246 CL---LVLLNVQNAKA-WNAFNLS--------CKILLTTRF------KQVTDFLSAATTT 287

Query: 144 EIC--QRACKLAIRQSIE-----TEIRRE---REKLAGNP-AAS--AAMETEDED--DPV 188
            I     +  L   +         + R +   RE L  NP   S  A    +     D  
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 189 PEITRAHFEEAMRFARRSVNDADIRK-YEMFA 219
             +        +  +   +  A+ RK ++  +
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Length = 262

 Score = 75.0 bits (185), Expect = 6e-16
 Identities = 31/66 (46%), Positives = 42/66 (63%)

Query: 9  HPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEAN 68
           PE+FL+ G +  +G L  GPPGCGKTLLAKA+A E Q  F+++ G E + +  G   A 
Sbjct: 27 SPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAAR 86

Query: 69 VRDIFD 74
          VR +F 
Sbjct: 87 VRSLFK 92

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Length = 268

 Score = 74.6 bits (184), Expect = 8e-16
 Identities = 29/67 (43%), Positives = 41/67 (61%)

Query: 9  HPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEAN 68
          +PE++   G +  +GVL  GPPG GKTLLAKA+A E    F S+ G   + M+ G   + 
Sbjct: 32 YPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASR 91

Query: 69 VRDIFDK 75
          VRD+F+ 
Sbjct: 92 VRDLFET 98

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Length = 268

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 8/67 (11%)

Query: 94  RETIVEVPNITWEDIGGLEG---VKRELQELVQDVDLNYIAKVTNGFSGADLTEICQRAC 150
           R+ +V+ P     D  G      V  +  +L  DV+L  +AK+T G +GADL  I   A 
Sbjct: 176 RQVLVDKP-----DFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAA 230

Query: 151 KLAIRQS 157
            LA R +
Sbjct: 231 LLAGRNN 237

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Length = 257

 Score = 74.3 bits (183), Expect = 8e-16
 Identities = 30/67 (44%), Positives = 43/67 (64%)

Query: 9  HPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEAN 68
           P +F K G +  +GVL  GPPG GKTLLAKAIA E +  F ++ G + + M+ G   + 
Sbjct: 33 EPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASR 92

Query: 69 VRDIFDK 75
          VRD+F++
Sbjct: 93 VRDMFEQ 99

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Length = 257

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 8/67 (11%)

Query: 94  RETIVEVPNITWEDIGGLEG---VKRELQELVQDVDLNYIAKVTNGFSGADLTEICQRAC 150
           R+ +V +P     D+ G E    V      L  D+D   IA+ T GFSGADL  +   A 
Sbjct: 175 RQVVVGLP-----DVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAA 229

Query: 151 KLAIRQS 157
             A R +
Sbjct: 230 LFAARGN 236

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Length = 254

 Score = 73.9 bits (182), Expect = 1e-15
 Identities = 28/67 (41%), Positives = 42/67 (62%)

Query: 9   HPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEAN 68
           +P +F + G +  +GVL  GPPG GKT LA+A+A E +  FI+  G + + M+ G   A 
Sbjct: 37  NPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAAR 96

Query: 69  VRDIFDK 75
           VRD+F+ 
Sbjct: 97  VRDLFET 103

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Length = 254

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 8/67 (11%)

Query: 94  RETIVEVPNITWEDIGGLEG---VKRELQELVQDVDLNYIAKVTNGFSGADLTEICQRAC 150
           R+  ++ P     D+ G E    +    + L +DVDL  +AK T GF GADL  +   A 
Sbjct: 179 RQIAIDAP-----DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAA 233

Query: 151 KLAIRQS 157
            LA R+ 
Sbjct: 234 LLAAREG 240

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Length = 278

 Score = 73.2 bits (180), Expect = 3e-15
 Identities = 28/66 (42%), Positives = 41/66 (62%)

Query: 10  PEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANV 69
           P +F + G +  +GVL  GPPG GKT LA+A+A E +  FI+  G + + M+ G   A V
Sbjct: 62  PSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARV 121

Query: 70  RDIFDK 75
           RD+F+ 
Sbjct: 122 RDLFET 127

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Length = 278

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 8/67 (11%)

Query: 94  RETIVEVPNITWEDIGGLEG---VKRELQELVQDVDLNYIAKVTNGFSGADLTEICQRAC 150
           R+  ++ P     D+ G E    +    + L +DVDL  +AK T GF GADL  +   A 
Sbjct: 203 RQIAIDAP-----DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAA 257

Query: 151 KLAIRQS 157
            LA R+ 
Sbjct: 258 LLAAREG 264

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Length = 476

 Score = 69.9 bits (172), Expect = 1e-13
 Identities = 27/67 (40%), Positives = 40/67 (59%)

Query: 9   HPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEAN 68
            P KF + G +  +G+L  GPPG GKTLLA+A+A E    F  + G + + ++ G   A 
Sbjct: 37  DPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAAR 96

Query: 69  VRDIFDK 75
           VRD+F +
Sbjct: 97  VRDLFAQ 103

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Length = 476

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 18/37 (48%), Positives = 22/37 (59%)

Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQS 157
           L +DV+L  IAK T GF GADL  +   A  LA R+ 
Sbjct: 204 LAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREG 240

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Length = 499

 Score = 69.5 bits (171), Expect = 2e-13
 Identities = 28/66 (42%), Positives = 42/66 (63%)

Query: 9   HPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEAN 68
           +P +F + G +  +GVL  GPPG GKT LA+A+A E +  FI+  G + + M+ G   A 
Sbjct: 52  NPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAAR 111

Query: 69  VRDIFD 74
           VRD+F+
Sbjct: 112 VRDLFE 117

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Length = 499

 Score = 39.9 bits (94), Expect = 8e-04
 Identities = 18/37 (48%), Positives = 22/37 (59%)

Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQS 157
           L +DVDL  +AK T GF GADL  +   A  LA R+ 
Sbjct: 219 LAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG 255

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456

 Score = 53.8 bits (129), Expect = 2e-08
 Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 11/77 (14%)

Query: 12  KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANE--CQANFISVKGPELLTMWFGESEANV 69
           + +K      R VL  GPPG GKT LA AIA E   +  F  + G E+ +    ++E   
Sbjct: 54  ELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE--- 110

Query: 70  RDIFDKVTMENFRYAMG 86
                 V MENFR A+G
Sbjct: 111 ------VLMENFRRAIG 121

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 34/182 (18%), Positives = 66/182 (36%), Gaps = 26/182 (14%)

Query: 8   EHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFI----S-VKGPELLTMWF 62
              +   K G    R  + YGPPG GKT  A  +A E   + +    S V+   LL    
Sbjct: 64  NSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLL---- 119

Query: 63  GESEANVRDIFDKVTMENFRYAMGKSSPSALRETIV---EVPNITWEDIGGLEGVKRELQ 119
               A V++  D +++  +     ++     +  ++   EV  ++  D GG+     +L 
Sbjct: 120 ---NAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGV----GQLA 172

Query: 120 ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRR------EREKLAGNP 173
           +  +      +  + N  +   +    +    +  R+     I+        REK   +P
Sbjct: 173 QFCRKTS-TPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP 231

Query: 174 AA 175
             
Sbjct: 232 NV 233

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Length = 180

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 8/50 (16%)

Query: 15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN------FISVKGPELL 58
           F  +  +G+ F G PG GKT LA A              F      +L+
Sbjct: 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDT--KDLI 79

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Length = 447

 Score = 49.8 bits (120), Expect = 5e-07
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISV 52
          ++ +GPPG GKT LA+ IA    A+   +
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERI 81

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Length = 202

 Score = 48.1 bits (115), Expect = 6e-07
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 17/92 (18%)

Query: 18  MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVT 77
            +  +G+  +G  G GKT L  AIANE     +S                 V ++F +  
Sbjct: 51  GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSL--------I----VYVPELFRE-- 96

Query: 78  MENFRYAMGKSSPSALRETIVEVPNITWEDIG 109
               ++++   + +   + I +VP +  +D+G
Sbjct: 97  ---LKHSLQDQTMNEKLDYIKKVPVLMLDDLG 125

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Length = 338

 Score = 49.1 bits (118), Expect = 7e-07
 Identities = 15/34 (44%), Positives = 19/34 (55%)

Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 57
          +LF GP G GKT LA  I+ E  AN  +   P +
Sbjct: 58 ILFSGPAGLGKTTLANIISYEMSANIKTTAAPMI 91

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Length = 334

 Score = 49.1 bits (118), Expect = 7e-07
 Identities = 19/34 (55%), Positives = 20/34 (58%)

Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 57
          VL  GPPG GKT LA  IA+E Q N     GP L
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Length = 309

 Score = 48.6 bits (115), Expect = 9e-07
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 10/79 (12%)

Query: 7   VEHPEKFLKFGM---QPSRGVLFYGPPGCGKTLLAKAIANECQA-------NFISVKGPE 56
           +       K G+    P+  + F G PG GKT +A  +A            + +SV   +
Sbjct: 50  LLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD 109

Query: 57  LLTMWFGESEANVRDIFDK 75
           L+  + G +    +++  +
Sbjct: 110 LVGQYIGHTAPKTKEVLKR 128

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Length = 324

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 57
          +L +GPPG GKT LA  IA+E   N     GP +
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI 74

>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} Length = 86

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIR 155
           L + ++L  IA++  G SGA++  +C  A   A+R
Sbjct: 29  LTRGINLRKIAELMPGASGAEVKGVCTEAGMYALR 63

>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B Length = 82

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQ 156
           L  + DL+ +    +  SGA +  I Q A   A+R+
Sbjct: 16  LAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK 51

>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B* Length = 88

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 9/35 (25%), Positives = 18/35 (51%)

Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIR 155
           + + +    I+++    +GA+L  +C  A   AIR
Sbjct: 19  VERGIRWELISRLCPNSTGAELRSVCTEAGMFAIR 53

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Length = 308

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 18/96 (18%)

Query: 15  KFGMQPSRGVLFYGPPGCGKTLLAKAIANEC-QANFISVKGPELLTMWFGESEANVRDIF 73
           ++     +G+  YG  G GK+ L  A+A+E  +   +S                +     
Sbjct: 146 QYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTT--------L----LHFPSFA 193

Query: 74  DKVTMENFRYAMGKSSPSALRETIVEVPNITWEDIG 109
             V     + A+   S     + +  VP +  +DIG
Sbjct: 194 IDV-----KNAISNGSVKEEIDAVKNVPVLILDDIG 224

>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} Length = 78

 Score = 43.6 bits (104), Expect = 2e-06
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIR 155
           L + ++L  IA++  G SGA++  +C  A   A+R
Sbjct: 21  LTRGINLRKIAELMPGASGAEVKGVCTEAGMYALR 55

>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* Length = 83

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 30/81 (37%)

Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAME 180
           L ++VDL       +  SGAD+  ICQ +  LA+R          R              
Sbjct: 19  LSEEVDLEDYVARPDKISGADINSICQESGMLAVR--------ENRYI------------ 58

Query: 181 TEDEDDPVPEITRAHFEEAMR 201
                     +    FE+A +
Sbjct: 59  ----------VLAKDFEKAYK 69

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFIS 51
          GMQ    ++  G P  GKT L++A+A   +   +S
Sbjct: 1  GMQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A Length = 377

 Score = 43.9 bits (103), Expect = 3e-05
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 22  RGVLFYGPPGCGKTLLAKAIANECQANFISVKGP-ELLTMWFGESEANVRDIFDKVTME 79
           R  LF GP   GKT LA A+   C    ++V  P + L    G +      +F+ V   
Sbjct: 170 RYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGT 228

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Length = 226

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 12/20 (60%), Positives = 14/20 (70%)

Query: 25 LFYGPPGCGKTLLAKAIANE 44
          LF GPPG GKT  A A+A +
Sbjct: 42 LFSGPPGTGKTATAIALARD 61

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Length = 319

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 12/20 (60%), Positives = 14/20 (70%)

Query: 25 LFYGPPGCGKTLLAKAIANE 44
          LF GPPG GKT  A A+A +
Sbjct: 42 LFSGPPGTGKTATAIALARD 61

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Length = 327

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 13/20 (65%), Positives = 14/20 (70%)

Query: 25 LFYGPPGCGKTLLAKAIANE 44
          LF GPPG GKT  A A+A E
Sbjct: 50 LFAGPPGVGKTTAALALARE 69

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Length = 604

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 10/105 (9%)

Query: 8   EHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANE----------CQANFISVKGPEL 57
           EH  + +K      R VL  G PG GK++L +A+A               N      P +
Sbjct: 47  EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRI 106

Query: 58  LTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSALRETIVEVPN 102
            T+   +    V    +K   +    +      S +    + V N
Sbjct: 107 KTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDN 151

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	299
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	100.0
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.97
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	99.96
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.96
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	99.96
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	99.95
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	99.95
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	99.95
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	99.94
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	99.92
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	99.91
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.91
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	99.9
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	99.89
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.89
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	99.89
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	99.87
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	99.79
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	99.79
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	99.76
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.74
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	99.73
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	99.72
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	99.71
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	99.69
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	99.64
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	99.64
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	99.64
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	99.57
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	99.57
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	99.56
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	99.56
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	99.54
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	99.54
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	99.37
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.31
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	99.28
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.22
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.22
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	99.21
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	99.2
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	99.16
3aji_B	83	S6C, proteasome (prosome, macropain) 26S subunit,	99.15
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	99.15
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.12
2krk_A	86	26S protease regulatory subunit 8; structural geno	99.12
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.07
3vlf_B	88	26S protease regulatory subunit 7 homolog; heat re	99.07
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.07
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.05
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.02
3kw6_A	78	26S protease regulatory subunit 8; structural geno	99.0
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	98.98
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.98
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	98.96
1b0u_A	262	Histidine permease; ABC transporter, transport pro	98.96
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	98.95
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.95
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	98.95
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	98.95
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	98.94
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	98.93
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	98.93
1g6h_A	257	High-affinity branched-chain amino acid transport	98.92
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	98.92
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	98.92
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.91
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	98.9
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	98.9
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	98.89
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.87
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.86
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	98.86
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.86
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.84
2dzn_B	82	26S protease regulatory subunit 6B homolog; ankyri	98.84
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	98.84
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	98.82
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	98.82
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.82
1sgw_A	214	Putative ABC transporter; structural genomics, P p	98.82
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.81
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.81
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.8
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	98.78
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.78
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.76
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.75
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.73
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	98.69
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.68
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.67
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.67
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	98.6
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	98.6
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.6
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	98.57
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	98.56
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	98.56
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.55
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	98.54
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.49
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.44
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	98.43
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.43
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.39
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.37
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.36
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.35
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	98.33
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.3
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.3
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.27
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.25
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.23
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.23
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.22
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	98.21
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.21
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.16
3bos_A	242	Putative DNA replication factor; P-loop containing	98.16
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.15
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	98.12
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.09
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.06
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.04
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	98.03
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.03
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.02
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.02
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	98.01
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	98.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.99
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.97
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.96
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	97.9
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.89
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.89
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.88
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.87
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.85
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.85
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.84
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.82
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.81
3co5_A	143	Putative two-component system transcriptional RES	97.8
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.79
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.79
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.79
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.79
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.77
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.76
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.76
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	97.76
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.75
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.73
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.73
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.73
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.73
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.72
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.7
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.69
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.68
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.67
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.66
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.66
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.66
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.64
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.64
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.64
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.63
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.62
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.62
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.61
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.59
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.59
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.58
3pvs_A	447	Replication-associated recombination protein A; ma	97.58
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.57
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.57
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.56
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.56
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.55
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.55
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.54
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.54
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.54
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.53
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	97.53
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.51
2r44_A	331	Uncharacterized protein; putative ATPase, structur	97.51
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	97.51
2og2_A	359	Putative signal recognition particle receptor; nuc	97.5
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.5
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.5
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.5
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.49
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.49
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	97.49
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.49
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.48
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.47
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.46
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.46
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.46
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.44
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.44
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.44
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	97.43
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.43
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.43
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.43
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.42
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.42
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.42
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.42
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.41
1via_A	175	Shikimate kinase; structural genomics, transferase	97.4
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.39
1tue_A	212	Replication protein E1; helicase, replication, E1E	97.39
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.39
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.39
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.37
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.37
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.37
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.36
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.36
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.36
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.35
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.34
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.34
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.34
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.34
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.33
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.33
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.33
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.32
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	97.32
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.32
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.31
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.3
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.29
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.29
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	97.29
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.29
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.28
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.27
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.27
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.26
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.26
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.25
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.25
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.25
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.25
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.25
1tue_A	212	Replication protein E1; helicase, replication, E1E	97.23
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.22
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.22
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.22
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.22
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.21
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.21
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.2
2qgz_A	308	Helicase loader, putative primosome component; str	97.2
2chq_A	319	Replication factor C small subunit; DNA-binding pr	97.2
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	97.19
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.19
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.19
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.19
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.18
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.18
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.17
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.16
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.16
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.16
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.16
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.15
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.14
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.14
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.14
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.12
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.12
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.11
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.11
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	97.11
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.1
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.1
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.09
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.08
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.08
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.07
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.06
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.06
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.04
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.04
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.03
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.02
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.02
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.01
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.01
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.01
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.99
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.99
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.98
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.97
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.96
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	96.96
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.95
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.95
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	96.95
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.95
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.94
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.93
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.93
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.92
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	96.91
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.9
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.89
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.86
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.86
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.85
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.85
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	96.85
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.85
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.82
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.82
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.81
3pvs_A	447	Replication-associated recombination protein A; ma	96.81
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.8
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.8
2chq_A	319	Replication factor C small subunit; DNA-binding pr	96.79
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.79
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.78
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.78
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	96.78
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.77
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	96.77
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.76
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.76
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.76
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.76
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	96.76
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.76
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.76
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.75
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.74
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.74
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.73
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.73
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.71
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.7
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	96.69
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.68
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.67
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.62
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.61
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	96.58
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	96.58
2fna_A	357	Conserved hypothetical protein; structural genomic	96.58
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.58
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	96.56
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.56
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.55
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	96.54
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.54
3co5_A	143	Putative two-component system transcriptional RES	96.51
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.49
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.49
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	96.49
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.48
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.48
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	96.47
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.47
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.46
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.46
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.45
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.44
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.44
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	96.42
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	96.41
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.39
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.39
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	96.39
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.37
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	96.36
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	96.35
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.34
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.34
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.32
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.31
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.3
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	96.27
3bos_A	242	Putative DNA replication factor; P-loop containing	96.26
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	96.26
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	96.25
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	96.2
1e69_A	322	Chromosome segregation SMC protein; structural mai	96.14
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.13
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.12
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	96.11
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	96.08
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.05
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.03
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.0
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.0
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.0
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.0
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.99
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	95.99
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.99
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	95.97
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.97
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	95.95
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	95.94
3io5_A	333	Recombination and repair protein; storage dimer, i	95.91
2r44_A	331	Uncharacterized protein; putative ATPase, structur	95.9
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	95.88
2qgz_A	308	Helicase loader, putative primosome component; str	95.87
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	95.87
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.86
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	95.86
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	95.86
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	95.84
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	95.81
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	95.81
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	95.8
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.78
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.77
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	95.76
3ice_A	422	Transcription termination factor RHO; transcriptio	95.75
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.67
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.62
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.61
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	95.59
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.57
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	95.57
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.54
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.52
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	95.52
1xp8_A	366	RECA protein, recombinase A; recombination, radior	95.52
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	95.51
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	95.49
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.49
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	95.47
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.45
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	95.43
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.43
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	95.43
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	95.42
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	95.38
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	95.37
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	95.37
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	95.36
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	95.34
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	95.33
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	95.32
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.32
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	95.32
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	95.32
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	95.31
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	95.31
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	95.31
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	95.3
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	95.3
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	95.3
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	95.29
1nrj_B	218	SR-beta, signal recognition particle receptor beta	95.26
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.26
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	95.25
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.24
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	95.23
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	95.23
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.23
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	95.22
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.2
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	95.18
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	95.17
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	95.17
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	95.17
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.17
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.16
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	95.15
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	95.13
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	95.12
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	95.12
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	95.11
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	95.09
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	95.09
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	95.08
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	95.07
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	95.06
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	95.05
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	95.05
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.04
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	95.03
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	95.03
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.02
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.02
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	95.0

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=100.00  E-value=7.1e-44  Score=360.54  Aligned_cols=246  Identities=30%  Similarity=0.460  Sum_probs=200.8

Q ss_pred             eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773          2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--   79 (299)
Q Consensus         2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--   79 (299)
                      .|.+|+++|++|..+++.++++||||||||||||+|+|+||++++.+++.++|.++.+++.|++++.++.+|..|...  
T Consensus       219 ~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~P  298 (806)
T 3cf2_A          219 MVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAP  298 (806)
T ss_dssp             HHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCS
T ss_pred             HHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCC
Confidence            467899999999999999999999999999999999999999999999999999999999999999999999998754  


Q ss_pred             ---------HHhhhhcCCCchhhh----HHHhhc-----------------CccchhhcCC-----------CccHHHHH
Q psy13773         80 ---------NFRYAMGKSSPSALR----ETIVEV-----------------PNITWEDIGG-----------LEGVKREL  118 (299)
Q Consensus        80 ---------~~~~~~~~~~~~~~~----~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~  118 (299)
                               .++..+........+    +++..+                 ++.++++++|           .|+..+|.
T Consensus       299 sIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~  378 (806)
T 3cf2_A          299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL  378 (806)
T ss_dssp             EEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHH
T ss_pred             eEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHH
Confidence                     455555444332222    222222                 6777777754           68998887


Q ss_pred             h---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcc
Q psy13773        119 Q---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVP  189 (299)
Q Consensus       119 ~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (299)
                      +         .+..++++..||.+|+||||+||+.||.+|++.|++|......      ......       ..+.....
T Consensus       379 ~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~------~~~~~~-------~~e~~~~~  445 (806)
T 3cf2_A          379 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLID------LEDETI-------DAEVMNSL  445 (806)
T ss_dssp             HHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGG------GTCCCC-------SHHHHHHC
T ss_pred             HHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccc------cccccc-------chhhhccc
Confidence            6         3457889999999999999999999999999999998764210      000000       00001124


Q ss_pred             cccHHHHHHHHHhccCC-----------CCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCC
Q psy13773        190 EITRAHFEEAMRFARRS-----------VNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTG  257 (299)
Q Consensus       190 ~it~~Df~~AL~~~~Ps-----------Vsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg  257 (299)
                      .|+.+||..|+++++|+           |+|+|||||+++|+++.++|+|  |++||++|.. |.+...|+|||||||||
T Consensus       446 ~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~--p~~~p~~f~~~g~~~~~gvLl~GPPGtG  523 (806)
T 3cf2_A          446 AVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQY--PVEHPDKFLKFGMTPSKGVLFYGPPGCG  523 (806)
T ss_dssp             EECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTT--TTTCSGGGSSSCCCCCSCCEEESSTTSS
T ss_pred             eeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHh--hhhCHHHHHhcCCCCCceEEEecCCCCC
Confidence            68899999999998864           9999999999999999999999  9999999976 78889999999999999


Q ss_pred             Ceeee
Q psy13773        258 GILLM  262 (299)
Q Consensus       258 ~~ll~  262 (299)
                      ||+|-
T Consensus       524 KT~lA  528 (806)
T 3cf2_A          524 KTLLA  528 (806)
T ss_dssp             HHHHH
T ss_pred             chHHH
Confidence            99874

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.97  E-value=3.1e-32  Score=275.63  Aligned_cols=224  Identities=69%  Similarity=1.107  Sum_probs=123.6

Q ss_pred             CeeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-
Q psy13773          1 MISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-   79 (299)
Q Consensus         1 ~~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-   79 (299)
                      ++|.+|+++|++|..+++.+++++|||||||||||+++++||.+++.+++.+++.++.++|+|+++++++.+|..|+.. 
T Consensus       491 e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~  570 (806)
T 3cf2_A          491 ELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAA  570 (806)
T ss_dssp             TTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTC
T ss_pred             HHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcC
Confidence            3678999999999999999999999999999999999999999999999999999999999999999999999999854 


Q ss_pred             ----------HHhhhhcCCC---c----hhhhHHHhhc-----------------CccchhhcCC-----------CccH
Q psy13773         80 ----------NFRYAMGKSS---P----SALRETIVEV-----------------PNITWEDIGG-----------LEGV  114 (299)
Q Consensus        80 ----------~~~~~~~~~~---~----~~~~~~l~~l-----------------~~~l~~~~~r-----------~p~~  114 (299)
                                .++..|....   .    ....++|.++                 |+.+|+++.|           +|+.
T Consensus       571 P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~  650 (806)
T 3cf2_A          571 PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE  650 (806)
T ss_dssp             SEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----
T ss_pred             CceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCH
Confidence                      4444443211   1    1122444443                 7888888754           6888


Q ss_pred             HHHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCC
Q psy13773        115 KRELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDED  185 (299)
Q Consensus       115 ~~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (299)
                      ++|..         .+..++|++.||++|+||||+||+.+|++|++.|+++.++...........+ +.    .......
T Consensus       651 ~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~-~~----~~~~~~~  725 (806)
T 3cf2_A          651 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTN-PS----AMEVEED  725 (806)
T ss_dssp             CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC--------------------------
T ss_pred             HHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccC-cc----ccccccc
Confidence            88876         3456789999999999999999999999999999999875432111110000 00    0011122


Q ss_pred             CCcccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy13773        186 DPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFG  229 (299)
Q Consensus       186 ~~~~~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~ti~~~  229 (299)
                      ...++|+.+||++||++++|||+.+|+..|++|.++|..+.++|
T Consensus       726 ~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~~~~~g  769 (806)
T 3cf2_A          726 DPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFG  769 (806)
T ss_dssp             --CCC----CCTTTC---------------CCCC----------
T ss_pred             cccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCcc
Confidence            34468999999999999999999999999999999999999885

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.9e-30  Score=242.50  Aligned_cols=174  Identities=31%  Similarity=0.517  Sum_probs=145.7

Q ss_pred             eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773          2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--   79 (299)
Q Consensus         2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--   79 (299)
                      +|++|+++|++|..+++.+++++|||||||||||+++++||++++.+++.++++++.++|+|++++.++.+|..|+..  
T Consensus       163 ~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP  242 (405)
T 4b4t_J          163 VIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAP  242 (405)
T ss_dssp             HTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCC
Confidence            578999999999999999999999999999999999999999999999999999999999999999999999999875  


Q ss_pred             ---------HHhhhhcCCCchh-------hhHHHhhc-----------------CccchhhcCC-----------CccHH
Q psy13773         80 ---------NFRYAMGKSSPSA-------LRETIVEV-----------------PNITWEDIGG-----------LEGVK  115 (299)
Q Consensus        80 ---------~~~~~~~~~~~~~-------~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~  115 (299)
                               .++..+.......       ..+++.++                 ++.+|+++.|           .|+..
T Consensus       243 ~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~  322 (405)
T 4b4t_J          243 SIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVA  322 (405)
T ss_dssp             EEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHH
T ss_pred             ceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHH
Confidence                     3444433322111       11333332                 7888888854           68888


Q ss_pred             HHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCC
Q psy13773        116 RELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDD  186 (299)
Q Consensus       116 ~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (299)
                      +|.+         .+..++|++.||.+|+||||+||+.+|.+|++.|+++..                            
T Consensus       323 ~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~----------------------------  374 (405)
T 4b4t_J          323 ARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERR----------------------------  374 (405)
T ss_dssp             HHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC----------------------------
T ss_pred             HHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC----------------------------
Confidence            8876         345788999999999999999999999999999987531                            


Q ss_pred             CcccccHHHHHHHHHhccC
Q psy13773        187 PVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       187 ~~~~it~~Df~~AL~~~~P  205 (299)
                        ..||.+||+.|++++.+
T Consensus       375 --~~vt~~Df~~Al~~v~~  391 (405)
T 4b4t_J          375 --IHVTQEDFELAVGKVMN  391 (405)
T ss_dssp             --SBCCHHHHHHHHHHHHH
T ss_pred             --CCcCHHHHHHHHHHHhC
Confidence              36999999999998765

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=9.3e-29  Score=235.12  Aligned_cols=177  Identities=27%  Similarity=0.450  Sum_probs=148.5

Q ss_pred             eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773          2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--   79 (299)
Q Consensus         2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--   79 (299)
                      .|++|+++|++|..+++++++++|||||||||||+++++||++++.+++.+++.++.++|+|++++.++.+|..|+..  
T Consensus       196 ~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP  275 (434)
T 4b4t_M          196 AIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAP  275 (434)
T ss_dssp             HTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCC
Confidence            478999999999999999999999999999999999999999999999999999999999999999999999998875  


Q ss_pred             ---------HHhhhhcCCCchh-------hhHHHhhc-----------------CccchhhcCC-----------CccHH
Q psy13773         80 ---------NFRYAMGKSSPSA-------LRETIVEV-----------------PNITWEDIGG-----------LEGVK  115 (299)
Q Consensus        80 ---------~~~~~~~~~~~~~-------~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~  115 (299)
                               .++..+.......       ...++..+                 ++.+|+++.|           .|+..
T Consensus       276 ~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~  355 (434)
T 4b4t_M          276 TIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSED  355 (434)
T ss_dssp             EEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHH
T ss_pred             eEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHH
Confidence                     4544443322211       11233322                 7888888854           68888


Q ss_pred             HHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCC
Q psy13773        116 RELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDD  186 (299)
Q Consensus       116 ~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (299)
                      +|..         .+..+++++.||.+|+||||+||+.+|.+|++.|+++..                            
T Consensus       356 ~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~----------------------------  407 (434)
T 4b4t_M          356 SRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQ----------------------------  407 (434)
T ss_dssp             HHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTC----------------------------
T ss_pred             HHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC----------------------------
Confidence            8876         345788999999999999999999999999999988642                            


Q ss_pred             CcccccHHHHHHHHHhccCCCC
Q psy13773        187 PVPEITRAHFEEAMRFARRSVN  208 (299)
Q Consensus       187 ~~~~it~~Df~~AL~~~~PsVs  208 (299)
                        ..|+.+||.+|+++++|+.+
T Consensus       408 --~~i~~~Df~~Al~~v~~~~~  427 (434)
T 4b4t_M          408 --SSVKHEDFVEGISEVQARKS  427 (434)
T ss_dssp             --SSBCHHHHHHHHHSCSSSCC
T ss_pred             --CCcCHHHHHHHHHHHhCCCC
Confidence              36899999999999999754

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.3e-29  Score=238.96  Aligned_cols=181  Identities=27%  Similarity=0.487  Sum_probs=149.6

Q ss_pred             eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773          2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--   79 (299)
Q Consensus         2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--   79 (299)
                      .|.+|+++|++|..+++.+++++|||||||||||+|+++||++++.+++.+++.++.++|+|++++.++.+|..|+..  
T Consensus       197 ~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP  276 (437)
T 4b4t_I          197 SVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAP  276 (437)
T ss_dssp             HHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCC
Confidence            478999999999999999999999999999999999999999999999999999999999999999999999999875  


Q ss_pred             ---------HHhhhhcCCCch---h----hhHHHhhc-----------------CccchhhcCC-----------CccHH
Q psy13773         80 ---------NFRYAMGKSSPS---A----LRETIVEV-----------------PNITWEDIGG-----------LEGVK  115 (299)
Q Consensus        80 ---------~~~~~~~~~~~~---~----~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~  115 (299)
                               .++..+......   .    ..++|.++                 ++.+|+++.|           .|+..
T Consensus       277 ~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~  356 (437)
T 4b4t_I          277 SIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLS  356 (437)
T ss_dssp             EEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHH
T ss_pred             cEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHH
Confidence                     333333222111   1    11333322                 7888988865           68888


Q ss_pred             HHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCC
Q psy13773        116 RELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDD  186 (299)
Q Consensus       116 ~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (299)
                      +|.+         .+..++|++.||..|+||||+||+.+|.+|++.|+++..                            
T Consensus       357 ~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~----------------------------  408 (437)
T 4b4t_I          357 TKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERR----------------------------  408 (437)
T ss_dssp             HHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC----------------------------
T ss_pred             HHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC----------------------------
Confidence            8876         345688999999999999999999999999999987532                            


Q ss_pred             CcccccHHHHHHHHHhccCCCCHHHH
Q psy13773        187 PVPEITRAHFEEAMRFARRSVNDADI  212 (299)
Q Consensus       187 ~~~~it~~Df~~AL~~~~PsVsw~DI  212 (299)
                        ..||.+||++|++++.|+++.+++
T Consensus       409 --~~It~eDf~~Al~rv~~~~~~e~l  432 (437)
T 4b4t_I          409 --MQVTAEDFKQAKERVMKNKVEENL  432 (437)
T ss_dssp             --SCBCHHHHHHHHHHHHHHHCCCSS
T ss_pred             --CccCHHHHHHHHHHHhCCCChhhH
Confidence              368999999999998876554444

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.9e-28  Score=231.94  Aligned_cols=179  Identities=29%  Similarity=0.462  Sum_probs=147.4

Q ss_pred             eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773          2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--   79 (299)
Q Consensus         2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--   79 (299)
                      +|.+|+++|++|..+++.+++++|||||||||||+++++||++++.+++.++++++.++|+|++++.++.+|..|+..  
T Consensus       196 ~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P  275 (437)
T 4b4t_L          196 VIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEP  275 (437)
T ss_dssp             HHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCC
Confidence            578999999999999999999999999999999999999999999999999999999999999999999999999875  


Q ss_pred             ---------HHhhhhcCCCch---h----hhHHHhhc-----------------CccchhhcCC-----------CccHH
Q psy13773         80 ---------NFRYAMGKSSPS---A----LRETIVEV-----------------PNITWEDIGG-----------LEGVK  115 (299)
Q Consensus        80 ---------~~~~~~~~~~~~---~----~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~  115 (299)
                               .++..+......   .    ...+|.++                 ++.+|+++.|           .|+..
T Consensus       276 ~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~  355 (437)
T 4b4t_L          276 CIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEA  355 (437)
T ss_dssp             EEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHH
T ss_pred             ceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHH
Confidence                     344333222211   1    11333332                 7888888854           68888


Q ss_pred             HHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCC
Q psy13773        116 RELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDD  186 (299)
Q Consensus       116 ~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (299)
                      +|..         .+..++|++.+|..|+||||+||+.+|.+|++.|+++..                            
T Consensus       356 ~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~----------------------------  407 (437)
T 4b4t_L          356 GRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDR----------------------------  407 (437)
T ss_dssp             HHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTC----------------------------
T ss_pred             HHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC----------------------------
Confidence            8876         345688999999999999999999999999999987532                            


Q ss_pred             CcccccHHHHHHHHHhccCCCCHH
Q psy13773        187 PVPEITRAHFEEAMRFARRSVNDA  210 (299)
Q Consensus       187 ~~~~it~~Df~~AL~~~~PsVsw~  210 (299)
                        ..|+.+||.+|+++++|+.+-+
T Consensus       408 --~~i~~~d~~~Al~~v~~~~k~e  429 (437)
T 4b4t_L          408 --DHINPDDLMKAVRKVAEVKKLE  429 (437)
T ss_dssp             --SSBCHHHHHHHHHHHHHTCC--
T ss_pred             --CCCCHHHHHHHHHHHHhccCcc
Confidence              3689999999999998865543

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.6e-28  Score=230.43  Aligned_cols=174  Identities=29%  Similarity=0.506  Sum_probs=145.0

Q ss_pred             eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773          2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--   79 (299)
Q Consensus         2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--   79 (299)
                      .|++|+.+|++|..+++.+++++|||||||||||+|+++||++++.+++.+++.++.++|+|++++.++.+|..|+..  
T Consensus       224 ~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP  303 (467)
T 4b4t_H          224 VVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKA  303 (467)
T ss_dssp             HTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCC
Confidence            578999999999999999999999999999999999999999999999999999999999999999999999999875  


Q ss_pred             ---------HHhhhhcCCCchh-------hhHHHhhc-----------------CccchhhcCC-----------CccHH
Q psy13773         80 ---------NFRYAMGKSSPSA-------LRETIVEV-----------------PNITWEDIGG-----------LEGVK  115 (299)
Q Consensus        80 ---------~~~~~~~~~~~~~-------~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~  115 (299)
                               .++..+.......       ...+|.++                 ++.+|+++.|           .|+..
T Consensus       304 ~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~  383 (467)
T 4b4t_H          304 CIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLE  383 (467)
T ss_dssp             EEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHH
T ss_pred             ceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHH
Confidence                     3444443322211       11233322                 7888888744           68888


Q ss_pred             HHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCC
Q psy13773        116 RELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDD  186 (299)
Q Consensus       116 ~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (299)
                      +|.+         .+..+++++.||.+|+||||+||+.||.+|++.|+++..                            
T Consensus       384 ~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~----------------------------  435 (467)
T 4b4t_H          384 GRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR----------------------------  435 (467)
T ss_dssp             HHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTC----------------------------
T ss_pred             HHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC----------------------------
Confidence            8876         345678999999999999999999999999999988642                            


Q ss_pred             CcccccHHHHHHHHHhccC
Q psy13773        187 PVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       187 ~~~~it~~Df~~AL~~~~P  205 (299)
                        ..|+.+||++|++++.+
T Consensus       436 --~~it~~Df~~Al~kV~~  452 (467)
T 4b4t_H          436 --KVATEKDFLKAVDKVIS  452 (467)
T ss_dssp             --SSBCHHHHHHHHHHHHH
T ss_pred             --CccCHHHHHHHHHHHhc
Confidence              35899999999998754

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.5e-27  Score=225.02  Aligned_cols=178  Identities=28%  Similarity=0.438  Sum_probs=145.4

Q ss_pred             eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773          2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--   79 (299)
Q Consensus         2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--   79 (299)
                      .|.+|+++|+.|..+++.+++++|||||||||||+++++||++++.+++.+++.++.++|+|++++.++.+|..|+..  
T Consensus       187 ~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP  266 (428)
T 4b4t_K          187 AVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAP  266 (428)
T ss_dssp             HHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCC
Confidence            467899999999999999999999999999999999999999999999999999999999999999999999999865  


Q ss_pred             ---------HHhhhhcCCCc---hh----hhHHHhhc-----------------CccchhhcCC------------CccH
Q psy13773         80 ---------NFRYAMGKSSP---SA----LRETIVEV-----------------PNITWEDIGG------------LEGV  114 (299)
Q Consensus        80 ---------~~~~~~~~~~~---~~----~~~~l~~l-----------------~~~l~~~~~r------------~p~~  114 (299)
                               .++..+.....   ..    ..+++.++                 ++.+|+++.|            +|+.
T Consensus       267 ~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~  346 (428)
T 4b4t_K          267 SIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDR  346 (428)
T ss_dssp             EEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCH
T ss_pred             CeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCH
Confidence                     44444432211   11    11333332                 7778887743            4788


Q ss_pred             HHHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCC
Q psy13773        115 KRELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDED  185 (299)
Q Consensus       115 ~~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (299)
                      .+|..         .+..++|++.||.+|+||||+||+.+|++|++.|+++..                           
T Consensus       347 ~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~---------------------------  399 (428)
T 4b4t_K          347 RERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR---------------------------  399 (428)
T ss_dssp             HHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTC---------------------------
T ss_pred             HHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC---------------------------
Confidence            88765         345688999999999999999999999999999988642                           


Q ss_pred             CCcccccHHHHHHHHHhc-cCCCCH
Q psy13773        186 DPVPEITRAHFEEAMRFA-RRSVND  209 (299)
Q Consensus       186 ~~~~~it~~Df~~AL~~~-~PsVsw  209 (299)
                         ..|+.+||++|+.+. +++.+.
T Consensus       400 ---~~i~~~d~~~A~~~~~~~~~~~  421 (428)
T 4b4t_K          400 ---YVILQSDLEEAYATQVKTDNTV  421 (428)
T ss_dssp             ---SSBCHHHHHHHHHHHSCSCCCS
T ss_pred             ---CCCCHHHHHHHHHHhhCccCCc
Confidence               368999999999774 665543

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=99.92  E-value=8.5e-25  Score=201.28  Aligned_cols=221  Identities=25%  Similarity=0.457  Sum_probs=152.6

Q ss_pred             eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh-cCCeecccchhhhhccccccHHHHHHHHHHHHHH-
Q psy13773          2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC-QANFISVKGPELLTMWFGESEANVRDIFDKVTME-   79 (299)
Q Consensus         2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l-~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-   79 (299)
                      .|.+|+.+|++|... ..++.+++|+||||||||++++++|.++ +..++.+++.++.+.+.++.+..++.+|..+... 
T Consensus        27 ~v~~p~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~  105 (322)
T 1xwi_A           27 AVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK  105 (322)
T ss_dssp             HHHHHHHCGGGSCTT-CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhCHHHHhCC-CCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcC
Confidence            467899999999753 5678999999999999999999999998 7889999999999999999999999999987653 


Q ss_pred             ----------HHhhhhcCCCchhhh----HHHhhc------------------CccchhhcC-C--------CccHHHHH
Q psy13773         80 ----------NFRYAMGKSSPSALR----ETIVEV------------------PNITWEDIG-G--------LEGVKREL  118 (299)
Q Consensus        80 ----------~~~~~~~~~~~~~~~----~~l~~l------------------~~~l~~~~~-r--------~p~~~~R~  118 (299)
                                .+...+.........    +++..+                  ++.+++++. |        .|+..+|.
T Consensus       106 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~  185 (322)
T 1xwi_A          106 PSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARA  185 (322)
T ss_dssp             SEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHH
T ss_pred             CcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHH
Confidence                      222222222111111    122111                  444555442 1        67777776


Q ss_pred             hhh----------cccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-----------hc----C
Q psy13773        119 QEL----------VQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRE--REK-----------LA----G  171 (299)
Q Consensus       119 ~~l----------~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~--~~~-----------~~----~  171 (299)
                      ..+          +.+.++..|+.+|+||||+|+..+|++|++.|+++.........  ...           ..    +
T Consensus       186 ~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (322)
T 1xwi_A          186 AMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPG  265 (322)
T ss_dssp             HHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEEEEECSSCTTSEEEEEEEECCSS
T ss_pred             HHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccccccc
Confidence            511          24556789999999999999999999999999998753100000  000           00    0


Q ss_pred             Ccccc-cccccC-CCCCCcccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Q psy13773        172 NPAAS-AAMETE-DEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQ  223 (299)
Q Consensus       172 ~~~~~-~~~~~~-~~~~~~~~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~  223 (299)
                      ..+.. ..+... .......+|+.+||.+||++++|||+|+|+..|++|.++|.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~~~  319 (322)
T 1xwi_A          266 DPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFG  319 (322)
T ss_dssp             STTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHTTC
T ss_pred             ccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHc
Confidence            00000 000000 01112357999999999999999999999999999998774

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=99.91  E-value=5.2e-24  Score=194.09  Aligned_cols=216  Identities=70%  Similarity=1.121  Sum_probs=155.7

Q ss_pred             eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773          2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--   79 (299)
Q Consensus         2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--   79 (299)
                      .|.+|+.+|+.|.++++.++.+++|+||||||||+++++||.+++.+++.++|.++.+.+.++.+..++.+|..+...  
T Consensus        30 ~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p  109 (301)
T 3cf0_A           30 LVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAP  109 (301)
T ss_dssp             HHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHTCS
T ss_pred             HHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhcCC
Confidence            356789999999999999999999999999999999999999999999999999999999999999999999988753  


Q ss_pred             ---------HHhhhhcCCC-------chhhhHHHhhc-----------------CccchhhcCC-----------CccHH
Q psy13773         80 ---------NFRYAMGKSS-------PSALRETIVEV-----------------PNITWEDIGG-----------LEGVK  115 (299)
Q Consensus        80 ---------~~~~~~~~~~-------~~~~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~  115 (299)
                               .+...+....       ......++..+                 ++.+++++.+           .|+.+
T Consensus       110 ~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~  189 (301)
T 3cf0_A          110 CVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK  189 (301)
T ss_dssp             EEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHH
T ss_pred             eEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHH
Confidence                     2333322110       01111222211                 3445555422           57777


Q ss_pred             HHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCC
Q psy13773        116 RELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDD  186 (299)
Q Consensus       116 ~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (299)
                      +|.+         .+..++++..++.+++||||+||+.+|.+|++.|+++.+.......... ...+.   .. ..+...
T Consensus       190 ~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~-~~~~~---~~-~~~~~~  264 (301)
T 3cf0_A          190 SRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERER-QTNPS---AM-EVEEDD  264 (301)
T ss_dssp             HHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC------------------------
T ss_pred             HHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc-ccccc---cc-cccccc
Confidence            7765         1235788999999999999999999999999999988764321100000 00000   00 001112


Q ss_pred             CcccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Q psy13773        187 PVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTL  222 (299)
Q Consensus       187 ~~~~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i  222 (299)
                      ....|+.+||.+||++++|+|+++|+..|++|+++|
T Consensus       265 ~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~  300 (301)
T 3cf0_A          265 PVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTL  300 (301)
T ss_dssp             -CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH
T ss_pred             cCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence            335799999999999999999999999999999987

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.91  E-value=1.8e-24  Score=194.81  Aligned_cols=192  Identities=37%  Similarity=0.575  Sum_probs=138.1

Q ss_pred             eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773          2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--   79 (299)
Q Consensus         2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--   79 (299)
                      .|++|+.+|+.|..+++..+.+++|+||||||||||+++||++++.+++.+++.++.+.+.++.++.++.+|+.+...  
T Consensus        25 ~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p  104 (274)
T 2x8a_A           25 AILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAP  104 (274)
T ss_dssp             HHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCC
Confidence            367899999999999999999999999999999999999999999999999999999888888889999999987543  


Q ss_pred             ---------HHhhhhcCCC----chhhhHHHhhc-----------------CccchhhcCC-----------CccHHHHH
Q psy13773         80 ---------NFRYAMGKSS----PSALRETIVEV-----------------PNITWEDIGG-----------LEGVKREL  118 (299)
Q Consensus        80 ---------~~~~~~~~~~----~~~~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~  118 (299)
                               .+...+....    .....+.+.++                 |+.+|+++.|           .|+..+|.
T Consensus       105 ~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~  184 (274)
T 2x8a_A          105 CVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRL  184 (274)
T ss_dssp             EEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHH
T ss_pred             CeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHH
Confidence                     1111111000    01111222222                 6677777643           68888877


Q ss_pred             hh------------hcccCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCC
Q psy13773        119 QE------------LVQDVDLNYIAKVT--NGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDE  184 (299)
Q Consensus       119 ~~------------l~~~v~l~~LA~~t--~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (299)
                      +.            +..++++..+|..+  +||||+||..+|++|++.|+++.......                   ..
T Consensus       185 ~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~-------------------~~  245 (274)
T 2x8a_A          185 AILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKS-------------------GN  245 (274)
T ss_dssp             HHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC--------------------------
T ss_pred             HHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccc-------------------cc
Confidence            51            23578899999875  59999999999999999999876432110                   00


Q ss_pred             CCCcccccHHHHHHHHHhccCCCCHHHH
Q psy13773        185 DDPVPEITRAHFEEAMRFARRSVNDADI  212 (299)
Q Consensus       185 ~~~~~~it~~Df~~AL~~~~PsVsw~DI  212 (299)
                      ......|+.+||++|+++++|+++.+|+
T Consensus       246 ~~~~~~i~~~df~~al~~~~ps~~~~~~  273 (274)
T 2x8a_A          246 EKGELKVSHKHFEEAFKKVRSSISKKDQ  273 (274)
T ss_dssp             ----CCBCHHHHHHHHTTCCCCC-----
T ss_pred             cccCCeecHHHHHHHHHHhcCCCChhhc
Confidence            0112479999999999999999988764

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=99.90  E-value=1.6e-23  Score=195.24  Aligned_cols=221  Identities=30%  Similarity=0.505  Sum_probs=147.6

Q ss_pred             eeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH---
Q psy13773          3 STYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME---   79 (299)
Q Consensus         3 v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~---   79 (299)
                      |.+|+.+|++|.. ...++.++||+||+|||||++++++|.+++..++.+++.++.+.+.++.+..++.+|..+...   
T Consensus        67 v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~  145 (355)
T 2qp9_X           67 VILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS  145 (355)
T ss_dssp             THHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSE
T ss_pred             HHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCe
Confidence            5678899999986 557788999999999999999999999999999999999999999999999999999887643   


Q ss_pred             --------HHhhhhcCCCchhhh----HHHhhc------------------CccchhhcC---------CCccHHHHHhh
Q psy13773         80 --------NFRYAMGKSSPSALR----ETIVEV------------------PNITWEDIG---------GLEGVKRELQE  120 (299)
Q Consensus        80 --------~~~~~~~~~~~~~~~----~~l~~l------------------~~~l~~~~~---------r~p~~~~R~~~  120 (299)
                              .+...+.........    .++..+                  ++.+++++.         ..|+..+|...
T Consensus       146 vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~i  225 (355)
T 2qp9_X          146 IIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTM  225 (355)
T ss_dssp             EEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHH
T ss_pred             EEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHH
Confidence                    122111111111111    111111                  333444331         26777777652


Q ss_pred             h----------cccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHh--c--CCcccc--c
Q psy13773        121 L----------VQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEI-------RREREKL--A--GNPAAS--A  177 (299)
Q Consensus       121 l----------~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~-------~~~~~~~--~--~~~~~~--~  177 (299)
                      +          +.+.++..|+.+++||||+||..+|.+|++.|+++......       .......  .  +.....  .
T Consensus       226 l~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (355)
T 2qp9_X          226 FEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMS  305 (355)
T ss_dssp             HHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECC
T ss_pred             HHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcc
Confidence            1          34556789999999999999999999999999988653100       0000000  0  000000  0


Q ss_pred             ccccCCCCCCcccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Q psy13773        178 AMETEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQ  224 (299)
Q Consensus       178 ~~~~~~~~~~~~~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~  224 (299)
                      +...........+|+.+||..||++++|+|+++|+..|++|+++|..
T Consensus       306 ~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~~~~  352 (355)
T 2qp9_X          306 WTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ  352 (355)
T ss_dssp             GGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHHTC-
T ss_pred             cccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence            00000111234579999999999999999999999999999998854

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=99.89  E-value=4.9e-23  Score=189.28  Aligned_cols=222  Identities=29%  Similarity=0.495  Sum_probs=151.7

Q ss_pred             eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773          2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--   79 (299)
Q Consensus         2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--   79 (299)
                      .|.+|+.+|++|.. ...++.+++|+||||||||++++++|.+++..++.++|.++.+.+.++.+..++.+|..+...  
T Consensus        33 ~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~  111 (322)
T 3eie_A           33 AVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKP  111 (322)
T ss_dssp             HTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcCC
Confidence            35678899999877 456788999999999999999999999999999999999999999999999999999988763  


Q ss_pred             ---------HHhhhhcCCCchh----hhHHHhhc------------------CccchhhcC---------CCccHHHHHh
Q psy13773         80 ---------NFRYAMGKSSPSA----LRETIVEV------------------PNITWEDIG---------GLEGVKRELQ  119 (299)
Q Consensus        80 ---------~~~~~~~~~~~~~----~~~~l~~l------------------~~~l~~~~~---------r~p~~~~R~~  119 (299)
                               .+...+.......    ...++..+                  ++.+++++.         ..|+..+|..
T Consensus       112 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~  191 (322)
T 3eie_A          112 SIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTT  191 (322)
T ss_dssp             EEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHH
T ss_pred             eEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHH
Confidence                     1211111110000    11111111                  334444431         2677777765


Q ss_pred             h----------hcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhc----CCccc-cc
Q psy13773        120 E----------LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEI-------RREREKLA----GNPAA-SA  177 (299)
Q Consensus       120 ~----------l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~-------~~~~~~~~----~~~~~-~~  177 (299)
                      .          .+.+.++..|+.+++||||+|+..+|++|++.|+++..+...       ........    +.+.. ..
T Consensus       192 il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (322)
T 3eie_A          192 MFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEM  271 (322)
T ss_dssp             HHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEE
T ss_pred             HHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccccc
Confidence            1          124556789999999999999999999999999998763200       00000000    00000 00


Q ss_pred             ccc-cCCCCCCcccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Q psy13773        178 AME-TEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQ  224 (299)
Q Consensus       178 ~~~-~~~~~~~~~~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~  224 (299)
                      .+. .........+||.+||.+|++.++|+|+.+++..|++|.++|..
T Consensus       272 ~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~  319 (322)
T 3eie_A          272 SWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ  319 (322)
T ss_dssp             EGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC-
T ss_pred             cccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC
Confidence            000 01111233679999999999999999999999999999998864

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=99.89  E-value=2.8e-23  Score=199.05  Aligned_cols=220  Identities=26%  Similarity=0.473  Sum_probs=141.7

Q ss_pred             eeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh-cCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773          3 STYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC-QANFISVKGPELLTMWFGESEANVRDIFDKVTME--   79 (299)
Q Consensus         3 v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l-~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--   79 (299)
                      |++|+.+|++|.. ...++.++||+||||||||+++++||.++ +..++.+++.++.+.+.++.+..++.+|..+...  
T Consensus       150 v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~  228 (444)
T 2zan_A          150 VILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKP  228 (444)
T ss_dssp             HTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHHHSCS
T ss_pred             HHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCC
Confidence            5688999999875 34677899999999999999999999998 7889999999999999999888999999887653  


Q ss_pred             ---------HHhhhhcCCCchhhh----HHHhhc------------------CccchhhcCC---------CccHHHHHh
Q psy13773         80 ---------NFRYAMGKSSPSALR----ETIVEV------------------PNITWEDIGG---------LEGVKRELQ  119 (299)
Q Consensus        80 ---------~~~~~~~~~~~~~~~----~~l~~l------------------~~~l~~~~~r---------~p~~~~R~~  119 (299)
                               .+...+.........    .++..+                  ++.+++++.|         .|+..+|..
T Consensus       229 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~  308 (444)
T 2zan_A          229 SIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAA  308 (444)
T ss_dssp             EEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHH
T ss_pred             eEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHH
Confidence                     111111111111111    222211                  3444444422         577777765


Q ss_pred             hh----------cccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-----------h--c--CC
Q psy13773        120 EL----------VQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRER--EK-----------L--A--GN  172 (299)
Q Consensus       120 ~l----------~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~--~~-----------~--~--~~  172 (299)
                      .+          +.+.++..|+.+|+||||+||..+|++|++.|+++..........  ..           .  +  +.
T Consensus       309 il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (444)
T 2zan_A          309 MFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGD  388 (444)
T ss_dssp             HHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTS
T ss_pred             HHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccCCCCc
Confidence            11          345677899999999999999999999999999987532000000  00           0  0  00


Q ss_pred             cccc--cccccCCCCCCcccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Q psy13773        173 PAAS--AAMETEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQ  223 (299)
Q Consensus       173 ~~~~--~~~~~~~~~~~~~~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~  223 (299)
                      .+..  .+...........+||.+||.+||++++|||+|+|+..|++|.++|.
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~~~~~  441 (444)
T 2zan_A          389 PGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFG  441 (444)
T ss_dssp             TTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHHHHHHHHHHTSSCT
T ss_pred             ccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHc
Confidence            0000  00000111122358999999999999999999999999999987664

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=99.87  E-value=1.8e-22  Score=195.45  Aligned_cols=197  Identities=34%  Similarity=0.538  Sum_probs=135.4

Q ss_pred             eeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH---
Q psy13773          3 STYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME---   79 (299)
Q Consensus         3 v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~---   79 (299)
                      |.+|+.+|++|..+++.++.++||+||||||||+++++|+.+++..++.++|.++.+.+.++.+..++.+|..+...   
T Consensus       220 i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~  299 (489)
T 3hu3_A          220 VELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA  299 (489)
T ss_dssp             THHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSE
T ss_pred             HHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCc
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999988654   


Q ss_pred             --------HHhhhhcCCCchhhh-------HHHhhc--------------CccchhhcCC-----------CccHHHHHh
Q psy13773         80 --------NFRYAMGKSSPSALR-------ETIVEV--------------PNITWEDIGG-----------LEGVKRELQ  119 (299)
Q Consensus        80 --------~~~~~~~~~~~~~~~-------~~l~~l--------------~~~l~~~~~r-----------~p~~~~R~~  119 (299)
                              .+...+.........       ..+..+              ++.+++++.+           .|+.++|.+
T Consensus       300 iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~  379 (489)
T 3hu3_A          300 IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE  379 (489)
T ss_dssp             EEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHH
T ss_pred             EEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHH
Confidence                    222222211111111       111111              3334444422           677777776


Q ss_pred             ---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCC-----C
Q psy13773        120 ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDE-----D  185 (299)
Q Consensus       120 ---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  185 (299)
                               .+..++++..++.++.||+++|+..||.+|++.|+++....                  +...+.     .
T Consensus       380 IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~------------------i~~~~~~~~~~~  441 (489)
T 3hu3_A          380 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDL------------------IDLEDETIDAEV  441 (489)
T ss_dssp             HHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTT------------------CCTTCSSCCHHH
T ss_pred             HHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccc------------------ccccccccchhh
Confidence                     23456788999999999999999999999999998875320                  000000     0


Q ss_pred             CCcccccHHHHHHHHHhccC-----------CCCHHHHHHHHH
Q psy13773        186 DPVPEITRAHFEEAMRFARR-----------SVNDADIRKYEM  217 (299)
Q Consensus       186 ~~~~~it~~Df~~AL~~~~P-----------sVsw~DIggL~~  217 (299)
                      .....|+.+||.+|+++++|           +|+|+||||+..
T Consensus       442 ~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~~  484 (489)
T 3hu3_A          442 MNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSH  484 (489)
T ss_dssp             HHHCCBCHHHHHHHHTSHHHHHHHGGGC---------------
T ss_pred             cccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCcc
Confidence            11236999999999998874           599999999864

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=99.79  E-value=1.7e-19  Score=168.11  Aligned_cols=202  Identities=31%  Similarity=0.542  Sum_probs=141.1

Q ss_pred             eeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH---
Q psy13773          3 STYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME---   79 (299)
Q Consensus         3 v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~---   79 (299)
                      |.+|+.+|+.|..+. .++.+++|+||+|||||+++++||..++..++.++|.++...+.++.+..++.+|..+...   
T Consensus       100 i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~  178 (357)
T 3d8b_A          100 VVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPA  178 (357)
T ss_dssp             THHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSE
T ss_pred             HHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCe
Confidence            456788888887654 6788999999999999999999999999999999999999999998888899999877642   


Q ss_pred             --------HHhhhhcCCCchhhh----HHHhhc-------------------CccchhhcC---------CCccHHHHHh
Q psy13773         80 --------NFRYAMGKSSPSALR----ETIVEV-------------------PNITWEDIG---------GLEGVKRELQ  119 (299)
Q Consensus        80 --------~~~~~~~~~~~~~~~----~~l~~l-------------------~~~l~~~~~---------r~p~~~~R~~  119 (299)
                              .+...+.........    .++..+                   ++.+++++.         ..|+..+|..
T Consensus       179 vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~  258 (357)
T 3d8b_A          179 VIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQ  258 (357)
T ss_dssp             EEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHH
T ss_pred             EEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHH
Confidence                    121111110000010    111111                   233343332         2567776665


Q ss_pred             hh----------cccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcc
Q psy13773        120 EL----------VQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVP  189 (299)
Q Consensus       120 ~l----------~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (299)
                      .+          +.+.++..++..+.||+++|+..||..|+..++++.......              .+    ......
T Consensus       259 il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~--------------~~----~~~~~~  320 (357)
T 3d8b_A          259 IVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIA--------------TI----TPDQVR  320 (357)
T ss_dssp             HHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------------------------CC
T ss_pred             HHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhc--------------cc----cccccC
Confidence            21          223346789999999999999999999999988754211000              00    011235


Q ss_pred             cccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Q psy13773        190 EITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQ  223 (299)
Q Consensus       190 ~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~  223 (299)
                      +|+.+||.+|+++++|+++.+++..|++|.+.+.
T Consensus       321 ~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g  354 (357)
T 3d8b_A          321 PIAYIDFENAFRTVRPSVSPKDLELYENWNKTFG  354 (357)
T ss_dssp             CBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHS
T ss_pred             CcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhC
Confidence            7999999999999999999999999999998764

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=99.79  E-value=1.7e-19  Score=162.94  Aligned_cols=204  Identities=29%  Similarity=0.495  Sum_probs=137.0

Q ss_pred             eeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH---
Q psy13773          3 STYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME---   79 (299)
Q Consensus         3 v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~---   79 (299)
                      |.+|+.+|++|..+. .++.+++|+||||||||+++++++..++..++.++|.++...+.+.....++.+|..+...   
T Consensus        37 i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  115 (297)
T 3b9p_A           37 VILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPS  115 (297)
T ss_dssp             THHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSE
T ss_pred             HHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCc
Confidence            456777888887665 4678999999999999999999999999999999999999888888888888888877643   


Q ss_pred             --------HHhhhhcCCC---chhh-hHHHh---hc-----------------Cccchhhc---------CCCccHHHHH
Q psy13773         80 --------NFRYAMGKSS---PSAL-RETIV---EV-----------------PNITWEDI---------GGLEGVKREL  118 (299)
Q Consensus        80 --------~~~~~~~~~~---~~~~-~~~l~---~l-----------------~~~l~~~~---------~r~p~~~~R~  118 (299)
                              .+...+....   .... ..++.   ..                 ++.+++++         .+.|+..+|.
T Consensus       116 vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~  195 (297)
T 3b9p_A          116 IIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRE  195 (297)
T ss_dssp             EEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHH
T ss_pred             EEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHH
Confidence                    1111110000   0000 01111   11                 22333332         2256666665


Q ss_pred             hhh----------cccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCc
Q psy13773        119 QEL----------VQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPV  188 (299)
Q Consensus       119 ~~l----------~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (299)
                      ..+          +.+.++..++..+.||+++|+..+|..|+..++++.......              .+    .....
T Consensus       196 ~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~--------------~~----~~~~~  257 (297)
T 3b9p_A          196 LLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVK--------------CL----DISAM  257 (297)
T ss_dssp             HHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------------------------CCCC
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcc--------------cc----ccccc
Confidence            421          223346789999999999999999999999998764311000              00    01123


Q ss_pred             ccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q psy13773        189 PEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQS  225 (299)
Q Consensus       189 ~~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~t  225 (299)
                      ..|+.+||..|+++++|+++.+++..+++|.+.+.+.
T Consensus       258 ~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~~  294 (297)
T 3b9p_A          258 RAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGDI  294 (297)
T ss_dssp             CCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC------
T ss_pred             CCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCe
Confidence            4799999999999999999999999999999988764

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=99.76  E-value=4.3e-18  Score=163.93  Aligned_cols=192  Identities=30%  Similarity=0.469  Sum_probs=139.1

Q ss_pred             CcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-------
Q psy13773          7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-------   79 (299)
Q Consensus         7 l~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-------   79 (299)
                      +..|+.|..+++..+.+++|+||||||||+|+++||++.+..++.++|.++...+.+.....++.+|..+...       
T Consensus        35 l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfI  114 (476)
T 2ce7_A           35 LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFI  114 (476)
T ss_dssp             HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEE
Confidence            4578889999999999999999999999999999999999999999999999988888888899999988753       


Q ss_pred             ----HHhhhhcC----CCc---hhhhHHHhhc-----------------CccchhhcCC-----------CccHHHHHh-
Q psy13773         80 ----NFRYAMGK----SSP---SALRETIVEV-----------------PNITWEDIGG-----------LEGVKRELQ-  119 (299)
Q Consensus        80 ----~~~~~~~~----~~~---~~~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~~-  119 (299)
                          .+...+..    ...   ....+++..+                 ++.+++++.|           .|+.++|.+ 
T Consensus       115 DEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~I  194 (476)
T 2ce7_A          115 DEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKI  194 (476)
T ss_dssp             ETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHH
T ss_pred             echhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHH
Confidence                11111110    000   0111222211                 4445554432           688777765 


Q ss_pred             --------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccc
Q psy13773        120 --------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEI  191 (299)
Q Consensus       120 --------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  191 (299)
                              .+..++++..+|..|.||+|+||..+|.+|+..|.++.                              ...|
T Consensus       195 l~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~------------------------------~~~I  244 (476)
T 2ce7_A          195 LEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREG------------------------------RDKI  244 (476)
T ss_dssp             HHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT------------------------------CSSB
T ss_pred             HHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcC------------------------------CCee
Confidence                    23467889999999999999999999999998886532                              1368


Q ss_pred             cHHHHHHHHHhccCC---------------CCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q psy13773        192 TRAHFEEAMRFARRS---------------VNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPN  239 (299)
Q Consensus       192 t~~Df~~AL~~~~Ps---------------Vsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~  239 (299)
                      +.+||..|+.++.+.               +.|+++|.         ..+.|  ++.|++-+.
T Consensus       245 ~~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~---------a~~~~--~l~~~~~~~  296 (476)
T 2ce7_A          245 TMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGH---------AVVST--VVPNGEPVH  296 (476)
T ss_dssp             CHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHH---------HHHHH--HSTTCCCCC
T ss_pred             cHHHHHHHHHHHhcCccccchhhhcchhhhhHHHHhhh---------HHHhh--ccCCccccc
Confidence            999999999987531               44555554         24677  888877543

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.74  E-value=2.6e-18  Score=166.32  Aligned_cols=192  Identities=31%  Similarity=0.476  Sum_probs=140.0

Q ss_pred             CcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-------
Q psy13773          7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-------   79 (299)
Q Consensus         7 l~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-------   79 (299)
                      +..|+.|..+++..+.+++|+||||||||||+++||++++.+++.++|.++...+.+.....++.+|+.+...       
T Consensus        50 l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~I  129 (499)
T 2dhr_A           50 LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFI  129 (499)
T ss_dssp             HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEE
T ss_pred             hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEE
Confidence            4567888888888899999999999999999999999999999999999998888888888888888876421       


Q ss_pred             ----HHhhhhcCC---Cch----hhhHHHhhc-----------------CccchhhcCC-----------CccHHHHHhh
Q psy13773         80 ----NFRYAMGKS---SPS----ALRETIVEV-----------------PNITWEDIGG-----------LEGVKRELQE  120 (299)
Q Consensus        80 ----~~~~~~~~~---~~~----~~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~~~  120 (299)
                          .+...+...   ...    ...+++.++                 ++.+++++.|           .|+..+|.+.
T Consensus       130 DEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~I  209 (499)
T 2dhr_A          130 DEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI  209 (499)
T ss_dssp             ECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHH
T ss_pred             ehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHH
Confidence                111111110   000    111233222                 4556655533           6888877762


Q ss_pred             ---------hcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccc
Q psy13773        121 ---------LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEI  191 (299)
Q Consensus       121 ---------l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  191 (299)
                               +..++++..+|..+.||+|+||+.+|.+|+..|.++.                              ...|
T Consensus       210 L~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~------------------------------~~~I  259 (499)
T 2dhr_A          210 LRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG------------------------------RRKI  259 (499)
T ss_dssp             HHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTC------------------------------CSSC
T ss_pred             HHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC------------------------------CCcc
Confidence                     3457788999999999999999999999988775531                              1368


Q ss_pred             cHHHHHHHHHhccCC---------------CCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q psy13773        192 TRAHFEEAMRFARRS---------------VNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPN  239 (299)
Q Consensus       192 t~~Df~~AL~~~~Ps---------------Vsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~  239 (299)
                      +.+||.+|++++.+.               |.|+++|.         ..+.|  .+.|++-+.
T Consensus       260 t~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~---------av~~~--~l~~~~~v~  311 (499)
T 2dhr_A          260 TMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGH---------ALAAH--FLEHADGVH  311 (499)
T ss_dssp             CSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHH---------HHHHC--CSSSCCCCC
T ss_pred             CHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHH---------HHHHh--hcCCCCeee
Confidence            999999999987532               45667665         24778  888887544

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=99.73  E-value=7.8e-18  Score=158.36  Aligned_cols=204  Identities=29%  Similarity=0.475  Sum_probs=135.2

Q ss_pred             eeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH---
Q psy13773          3 STYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME---   79 (299)
Q Consensus         3 v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~---   79 (299)
                      |.+|+.+|++|..+. .++.++||+||+|||||+++++||.+++..++.++|.++...+.+..+..++.+|..+...   
T Consensus       131 ~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~  209 (389)
T 3vfd_A          131 VILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPS  209 (389)
T ss_dssp             THHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSE
T ss_pred             HHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCe
Confidence            456777888887765 4578999999999999999999999999999999999999999999999999999887653   


Q ss_pred             --------HHhhhhcCCCchhhh----HHHhhc-------------------CccchhhcC---------CCccHHHHHh
Q psy13773         80 --------NFRYAMGKSSPSALR----ETIVEV-------------------PNITWEDIG---------GLEGVKRELQ  119 (299)
Q Consensus        80 --------~~~~~~~~~~~~~~~----~~l~~l-------------------~~~l~~~~~---------r~p~~~~R~~  119 (299)
                              .+...+.........    .++..+                   ++.+++++.         ..|+.++|..
T Consensus       210 il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~  289 (389)
T 3vfd_A          210 IIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLL  289 (389)
T ss_dssp             EEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHH
T ss_pred             EEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHH
Confidence                    111111110000001    111110                   233343332         1577777765


Q ss_pred             hh----------cccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcc
Q psy13773        120 EL----------VQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVP  189 (299)
Q Consensus       120 ~l----------~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (299)
                      .+          +.+.++..++..+.||+++++..||..|+..++++.....              ...+    ......
T Consensus       290 il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~--------------~~~~----~~~~~~  351 (389)
T 3vfd_A          290 LLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQ--------------VKNM----SASEMR  351 (389)
T ss_dssp             HHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC-----------------CC----SSSCCC
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhh--------------hhcc----chhhcC
Confidence            22          1223457899999999999999999999999987642100              0000    111235


Q ss_pred             cccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q psy13773        190 EITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQS  225 (299)
Q Consensus       190 ~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~t  225 (299)
                      .|+.+||..|+++++|+++.+++..|++|.+.+.++
T Consensus       352 ~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g~~  387 (389)
T 3vfd_A          352 NIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGDT  387 (389)
T ss_dssp             CCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC--
T ss_pred             CcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCc
Confidence            799999999999999999999999999998887553

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=99.72  E-value=2.1e-17  Score=148.29  Aligned_cols=188  Identities=36%  Similarity=0.551  Sum_probs=129.2

Q ss_pred             eeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH---
Q psy13773          3 STYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME---   79 (299)
Q Consensus         3 v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~---   79 (299)
                      +.+|+..|+.|..+++..+.+++|+||||||||++++++|..++..++.+++.++...+.+.....++.+|..+...   
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (285)
T 3h4m_A           33 VELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPS  112 (285)
T ss_dssp             THHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSE
T ss_pred             HHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCe
Confidence            45678889999999999999999999999999999999999999999999999999988998888899999877643   


Q ss_pred             --------HHhhhhcCCC---c----hhhhHHHhhc-----------------CccchhhcC---C--------CccHHH
Q psy13773         80 --------NFRYAMGKSS---P----SALRETIVEV-----------------PNITWEDIG---G--------LEGVKR  116 (299)
Q Consensus        80 --------~~~~~~~~~~---~----~~~~~~l~~l-----------------~~~l~~~~~---r--------~p~~~~  116 (299)
                              .+...+....   .    ......+..+                 ++.+++++.   |        .|+.++
T Consensus       113 vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~  192 (285)
T 3h4m_A          113 IIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKG  192 (285)
T ss_dssp             EEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHH
T ss_pred             EEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHH
Confidence                    1221111110   0    0111112111                 333333331   1        577777


Q ss_pred             HHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCC
Q psy13773        117 ELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDP  187 (299)
Q Consensus       117 R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (299)
                      |..         .+..++++..++..+.||+++|++.+|..|...|+++..                             
T Consensus       193 r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~-----------------------------  243 (285)
T 3h4m_A          193 RLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELR-----------------------------  243 (285)
T ss_dssp             HHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTC-----------------------------
T ss_pred             HHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-----------------------------
Confidence            665         223466889999999999999999999999998877531                             


Q ss_pred             cccccHHHHHHHHHhccC--CCCHHHHHHHHHHHH
Q psy13773        188 VPEITRAHFEEAMRFARR--SVNDADIRKYEMFAQ  220 (299)
Q Consensus       188 ~~~it~~Df~~AL~~~~P--sVsw~DIggL~~vk~  220 (299)
                       ..|+.+||.+|++++.+  ..+...-.-+..|..
T Consensus       244 -~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~  277 (285)
T 3h4m_A          244 -DYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYR  277 (285)
T ss_dssp             -SSBCHHHHHHHHHHHHHHHCCC------------
T ss_pred             -CcCCHHHHHHHHHHHHhccccccCCchHHHHHHH
Confidence             36999999999998753  233333344444443

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=99.71  E-value=1.4e-16  Score=141.05  Aligned_cols=168  Identities=34%  Similarity=0.560  Sum_probs=119.2

Q ss_pred             CcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-------
Q psy13773          7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-------   79 (299)
Q Consensus         7 l~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-------   79 (299)
                      +.+|+.|..++...+.+++|+|||||||||++++|++.++.+++.++|.++...+.+.....++.+|+.+...       
T Consensus        31 ~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~i  110 (257)
T 1lv7_A           31 LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFI  110 (257)
T ss_dssp             HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEE
T ss_pred             HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehh
Confidence            5667788888888889999999999999999999999999999999999998888888888999999887642       


Q ss_pred             ----HHhhhhcCC---Cc----hhhhHHHhhc-----------------CccchhhcCC-----------CccHHHHHh-
Q psy13773         80 ----NFRYAMGKS---SP----SALRETIVEV-----------------PNITWEDIGG-----------LEGVKRELQ-  119 (299)
Q Consensus        80 ----~~~~~~~~~---~~----~~~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~~-  119 (299)
                          .+...+...   ..    ......+..+                 ++.+++++.+           .|+.++|.+ 
T Consensus       111 Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~i  190 (257)
T 1lv7_A          111 DEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQI  190 (257)
T ss_dssp             TTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHH
T ss_pred             hhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHH
Confidence                111111110   00    0111222111                 3444444422           577777754 


Q ss_pred             --------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccc
Q psy13773        120 --------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEI  191 (299)
Q Consensus       120 --------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  191 (299)
                              .+..++++..++..+.||+++|+..+|.+|+..|.++..                              ..|
T Consensus       191 l~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~------------------------------~~i  240 (257)
T 1lv7_A          191 LKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNK------------------------------RVV  240 (257)
T ss_dssp             HHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC------------------------------SSB
T ss_pred             HHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC------------------------------Ccc
Confidence                    233567788999999999999999999999988866421                              369


Q ss_pred             cHHHHHHHHHhcc
Q psy13773        192 TRAHFEEAMRFAR  204 (299)
Q Consensus       192 t~~Df~~AL~~~~  204 (299)
                      +.+||.+|++++.
T Consensus       241 ~~~~~~~a~~~~~  253 (257)
T 1lv7_A          241 SMVEFEKAKDKIM  253 (257)
T ss_dssp             CHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHh
Confidence            9999999998875

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=99.69  E-value=1.9e-16  Score=139.93  Aligned_cols=163  Identities=37%  Similarity=0.589  Sum_probs=117.0

Q ss_pred             cChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--------
Q psy13773          8 EHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--------   79 (299)
Q Consensus         8 ~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--------   79 (299)
                      ..+..+..+++..+.+++|+||||||||||+++|++.+..+++.+++.++...+.+.....++.+|+.+...        
T Consensus        36 ~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~D  115 (254)
T 1ixz_A           36 KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFID  115 (254)
T ss_dssp             HCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred             HCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEeh
Confidence            456677777888888899999999999999999999999999999999988877777777888888876421        


Q ss_pred             ---HHhhhhcCC---Cchh----hhHHHhhc-----------------CccchhhcCC-----------CccHHHHHh--
Q psy13773         80 ---NFRYAMGKS---SPSA----LRETIVEV-----------------PNITWEDIGG-----------LEGVKRELQ--  119 (299)
Q Consensus        80 ---~~~~~~~~~---~~~~----~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~~--  119 (299)
                         .+...+...   ....    ..+.+..+                 |+.+++++.|           .|+.++|.+  
T Consensus       116 eid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il  195 (254)
T 1ixz_A          116 EIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQIL  195 (254)
T ss_dssp             THHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHH
T ss_pred             hhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHH
Confidence               121111110   0000    11222111                 5556665532           677777765  


Q ss_pred             -------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCccccc
Q psy13773        120 -------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEIT  192 (299)
Q Consensus       120 -------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it  192 (299)
                             .+..++++..+|.+++||+|+|++.+|.+|+..|.++.                              ...||
T Consensus       196 ~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~------------------------------~~~I~  245 (254)
T 1ixz_A          196 RIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG------------------------------RRKIT  245 (254)
T ss_dssp             HHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT------------------------------CSSBC
T ss_pred             HHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------------------------------CCCcC
Confidence                   23457789999999999999999999999988876532                              13689


Q ss_pred             HHHHHHHH
Q psy13773        193 RAHFEEAM  200 (299)
Q Consensus       193 ~~Df~~AL  200 (299)
                      .+||++|+
T Consensus       246 ~~dl~~a~  253 (254)
T 1ixz_A          246 MKDLEEAA  253 (254)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99999986

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.64  E-value=2.3e-18  Score=161.77  Aligned_cols=57  Identities=11%  Similarity=0.051  Sum_probs=53.8

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773        204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .|.|+|+|||||+++|++|.+.|+|  |++|||+|.. |++-..|+|||||||||||+|-
T Consensus       142 ~p~v~~~dIgGl~~~k~~l~e~v~~--Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllA  199 (405)
T 4b4t_J          142 VPDSTYDMVGGLTKQIKEIKEVIEL--PVKHPELFESLGIAQPKGVILYGPPGTGKTLLA  199 (405)
T ss_dssp             SCSCCGGGSCSCHHHHHHHHHHTHH--HHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHH
T ss_pred             CCCCCHHHhCCHHHHHHHHHHHHHH--HHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHH
Confidence            3789999999999999999999999  9999999987 8888899999999999999973

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=99.64  E-value=4.1e-16  Score=137.76  Aligned_cols=169  Identities=31%  Similarity=0.528  Sum_probs=109.4

Q ss_pred             CcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-------
Q psy13773          7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-------   79 (299)
Q Consensus         7 l~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-------   79 (299)
                      +..|+.|..+++..+.+++|+||+|||||++++++|.+++..++.++|.++...+.+.....++.+|..+...       
T Consensus        25 ~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~i  104 (262)
T 2qz4_A           25 LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYI  104 (262)
T ss_dssp             HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEE
Confidence            5667888888889999999999999999999999999999999999999998888888888888888877643       


Q ss_pred             ----HHhhhhcC--------CCchhhhHHHhhc-----------------CccchhhcC---C--------CccHHHHHh
Q psy13773         80 ----NFRYAMGK--------SSPSALRETIVEV-----------------PNITWEDIG---G--------LEGVKRELQ  119 (299)
Q Consensus        80 ----~~~~~~~~--------~~~~~~~~~l~~l-----------------~~~l~~~~~---r--------~p~~~~R~~  119 (299)
                          .+...+..        ........++..+                 ++.+++++.   |        .|+.++|.+
T Consensus       105 Deid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~  184 (262)
T 2qz4_A          105 DEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERRE  184 (262)
T ss_dssp             ECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHH
T ss_pred             eCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHH
Confidence                11111100        0011111222211                 333334332   2        577777765


Q ss_pred             hh---ccc--------CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCc
Q psy13773        120 EL---VQD--------VDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPV  188 (299)
Q Consensus       120 ~l---~~~--------v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (299)
                      .+   +..        +.+..++..+.||+++|++.+|..|+..|.++..                              
T Consensus       185 il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~------------------------------  234 (262)
T 2qz4_A          185 IFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGH------------------------------  234 (262)
T ss_dssp             HHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC------------------------------------
T ss_pred             HHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC------------------------------
Confidence            21   111        1236789999999999999999999888876532                              


Q ss_pred             ccccHHHHHHHHHhccC
Q psy13773        189 PEITRAHFEEAMRFARR  205 (299)
Q Consensus       189 ~~it~~Df~~AL~~~~P  205 (299)
                      ..|+.+||..|++++.+
T Consensus       235 ~~i~~~d~~~a~~~~~~  251 (262)
T 2qz4_A          235 TSVHTLNFEYAVERVLA  251 (262)
T ss_dssp             --CCBCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhcc
Confidence            25889999999998765

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=99.64  E-value=1.3e-15  Score=136.56  Aligned_cols=163  Identities=37%  Similarity=0.590  Sum_probs=115.7

Q ss_pred             cChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--------
Q psy13773          8 EHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--------   79 (299)
Q Consensus         8 ~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--------   79 (299)
                      ..+..+..+++..+.+++|+||||||||||+++|++.+..+++.+++.++...+.+.....+..+|+.+...        
T Consensus        60 ~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iD  139 (278)
T 1iy2_A           60 KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFID  139 (278)
T ss_dssp             HCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEE
T ss_pred             HCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehh
Confidence            345667777777788899999999999999999999999999999999988777777777788888877531        


Q ss_pred             ---HHhhhhcCC---Cch----hhhHHHhhc-----------------CccchhhcCC-----------CccHHHHHh--
Q psy13773         80 ---NFRYAMGKS---SPS----ALRETIVEV-----------------PNITWEDIGG-----------LEGVKRELQ--  119 (299)
Q Consensus        80 ---~~~~~~~~~---~~~----~~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~~--  119 (299)
                         .+...+...   ...    ...+.+.++                 ++.+++++.+           .|+.++|.+  
T Consensus       140 eid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il  219 (278)
T 1iy2_A          140 EIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQIL  219 (278)
T ss_dssp             THHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHH
T ss_pred             hhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHH
Confidence               111111100   000    011222211                 5556655422           677777765  


Q ss_pred             -------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCccccc
Q psy13773        120 -------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEIT  192 (299)
Q Consensus       120 -------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it  192 (299)
                             .+..++++..+|.+++||+|+||+.+|.+|+..|.++.                              ...|+
T Consensus       220 ~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~------------------------------~~~I~  269 (278)
T 1iy2_A          220 RIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG------------------------------RRKIT  269 (278)
T ss_dssp             HHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT------------------------------CCSBC
T ss_pred             HHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC------------------------------CCCcC
Confidence                   23457789999999999999999999999988776532                              13689


Q ss_pred             HHHHHHHH
Q psy13773        193 RAHFEEAM  200 (299)
Q Consensus       193 ~~Df~~AL  200 (299)
                      .+||.+|+
T Consensus       270 ~~dl~~a~  277 (278)
T 1iy2_A          270 MKDLEEAA  277 (278)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99999986

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.57  E-value=2.8e-17  Score=156.42  Aligned_cols=57  Identities=14%  Similarity=0.096  Sum_probs=54.0

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773        204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      +|+|+|+|||||+++|++|++.|+|  |++|||+|.. |++-..|||||||||||||+|-
T Consensus       203 ~P~vt~~DIgGl~~~k~~L~e~V~~--pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA  260 (467)
T 4b4t_H          203 KPDVTYSDVGGCKDQIEKLREVVEL--PLLSPERFATLGIDPPKGILLYGPPGTGKTLCA  260 (467)
T ss_dssp             SCSCCCSSCTTCHHHHHHHHHHTHH--HHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred             CCCCCHHHhccHHHHHHHHHHHHHH--HhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence            5889999999999999999999999  9999999976 8889999999999999999873

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.57  E-value=4.1e-17  Score=155.05  Aligned_cols=57  Identities=12%  Similarity=0.123  Sum_probs=53.0

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773        204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      +|.|+|+||||++++|++|.+.|.|  |++||++|.. |++-..|||||||||||||+|-
T Consensus       175 ~p~~t~~digGl~~~k~~l~e~v~~--pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllA  232 (434)
T 4b4t_M          175 KPTETYSDVGGLDKQIEELVEAIVL--PMKRADKFKDMGIRAPKGALMYGPPGTGKTLLA  232 (434)
T ss_dssp             SCSCCGGGSCSCHHHHHHHHHHTHH--HHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred             CCCCChHhcCcHHHHHHHHHHHHHH--HHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHH
Confidence            4789999999999999999999999  9999999975 7777889999999999999874

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.56  E-value=4.9e-17  Score=153.38  Aligned_cols=56  Identities=20%  Similarity=0.161  Sum_probs=52.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC-CCCCCCCcccccCCCCCCCeeee
Q psy13773        205 RSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPN-QSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       205 PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~-~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      |+|+|+|||||+++|++|.+.|+|  |++||++|. -|++-..|||||||||||||+|-
T Consensus       177 p~v~~~DIgGld~~k~~L~e~v~~--Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLA  233 (437)
T 4b4t_I          177 PTESYSDIGGLESQIQEIKESVEL--PLTHPELYEEMGIKPPKGVILYGAPGTGKTLLA  233 (437)
T ss_dssp             CCCCGGGTCSCHHHHHHHHHHHHH--HHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHH
T ss_pred             CCCcceecCcHHHHHHHHHHHHHH--HHhCHHHHHhCCCCCCCCCceECCCCchHHHHH
Confidence            779999999999999999999999  999999997 46777899999999999999874

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.56  E-value=4.1e-17  Score=155.16  Aligned_cols=56  Identities=14%  Similarity=0.105  Sum_probs=52.4

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeee
Q psy13773        204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILL  261 (299)
Q Consensus       204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll  261 (299)
                      +|.|+|+|||||+++|++|.+.|+|  |++||++|.. |++-..|||||||||||||+|
T Consensus       175 ~p~v~~~digGl~~~k~~l~e~v~~--pl~~p~~f~~~g~~~prGvLL~GPPGtGKTll  231 (437)
T 4b4t_L          175 QGEITFDGIGGLTEQIRELREVIEL--PLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLL  231 (437)
T ss_dssp             SCSSCSGGGCSCHHHHHHHHHHHHH--HHHCHHHHHHHCCCCCCEEEEESCTTSSHHHH
T ss_pred             CCCCChhHhCChHHHHHHHHHHHHH--HHhCHHHHHhCCCCCCCeEEEECCCCCcHHHH
Confidence            4789999999999999999999999  9999999975 677788999999999999986

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=99.54  E-value=2.1e-16  Score=140.53  Aligned_cols=171  Identities=32%  Similarity=0.542  Sum_probs=117.9

Q ss_pred             CcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-------
Q psy13773          7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-------   79 (299)
Q Consensus         7 l~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-------   79 (299)
                      +..|+.|..+++..+.+++|+||+|||||++++++|..++..++.++|.++...+.+.....++.+|..+...       
T Consensus        30 ~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~i  109 (268)
T 2r62_A           30 LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFI  109 (268)
T ss_dssp             HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEE
T ss_pred             HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHHhcCCeEEEE
Confidence            5678888888888889999999999999999999999999999999999988877777666667777776542       


Q ss_pred             ----HHhhhhc--------CCCchhhhHHHhh------------------cCccchhhcCC-----------CccHHHHH
Q psy13773         80 ----NFRYAMG--------KSSPSALRETIVE------------------VPNITWEDIGG-----------LEGVKREL  118 (299)
Q Consensus        80 ----~~~~~~~--------~~~~~~~~~~l~~------------------l~~~l~~~~~r-----------~p~~~~R~  118 (299)
                          .+...+.        .........++..                  .++.+++++.+           .|+.++|.
T Consensus       110 DEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~  189 (268)
T 2r62_A          110 DEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRV  189 (268)
T ss_dssp             SCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHH
T ss_pred             eChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHH
Confidence                1111100        0000000011111                  13333333321           45655555


Q ss_pred             h---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcc
Q psy13773        119 Q---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVP  189 (299)
Q Consensus       119 ~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (299)
                      +         .+..++++..++..+.||+|+|+..+|.+|+..|..+.                              ..
T Consensus       190 ~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~------------------------------~~  239 (268)
T 2r62_A          190 EILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN------------------------------QK  239 (268)
T ss_dssp             HHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSC------------------------------CC
T ss_pred             HHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------------------------------cC
Confidence            4         12345677889999999999999999999977764321                              13


Q ss_pred             cccHHHHHHHHHhccCCC
Q psy13773        190 EITRAHFEEAMRFARRSV  207 (299)
Q Consensus       190 ~it~~Df~~AL~~~~PsV  207 (299)
                      .|+.+||.+|++++.|+.
T Consensus       240 ~i~~~~~~~a~~~~~~~~  257 (268)
T 2r62_A          240 EVRQQHLKEAVERGIAGL  257 (268)
T ss_dssp             SCCHHHHHTSCTTCCCCC
T ss_pred             CcCHHHHHHHHHHHhhcc
Confidence            689999999999998864

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.54  E-value=8e-17  Score=152.90  Aligned_cols=57  Identities=18%  Similarity=0.180  Sum_probs=53.4

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773        204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      +|.|+|+|||||+++|++|.+.|.|  |++||++|.. |++-.-|+|||||||||||+|-
T Consensus       166 ~p~v~~~digGl~~~k~~l~e~v~~--pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~la  223 (428)
T 4b4t_K          166 KPDVTYADVGGLDMQKQEIREAVEL--PLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLV  223 (428)
T ss_dssp             SCSCCGGGSCSCHHHHHHHHHHHHH--HHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHH
T ss_pred             CCCCCHHHhccHHHHHHHHHHHHHH--HHhCHHHHHhCCCCCCceEEEECCCCCCHHHHH
Confidence            4779999999999999999999999  9999999986 7888899999999999999874

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=99.37  E-value=1.8e-14  Score=132.22  Aligned_cols=57  Identities=19%  Similarity=0.178  Sum_probs=53.3

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .|+|+|+||+|++++|+.+.+.+.|  |++||++|..+.....|+|||||||||||+|.
T Consensus         6 ~~~~~~~di~G~~~~k~~l~~~v~~--p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la   62 (322)
T 1xwi_A            6 RPNVKWSDVAGLEGAKEALKEAVIL--PIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA   62 (322)
T ss_dssp             CCCCCGGGSCSCHHHHHHHHHHHHH--HHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred             CCCCCHHHhcCHHHHHHHHHHHHHH--HHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence            4789999999999999999999999  99999999977667789999999999999985

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.31  E-value=3.3e-12  Score=129.61  Aligned_cols=60  Identities=23%  Similarity=0.371  Sum_probs=43.5

Q ss_pred             CCCCcEEEEEcCCCChHHHHHHHHHHhh----------cCCeecccchhhh--hccccccHHHHHHHHHHHH
Q psy13773         18 MQPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELL--TMWFGESEANVRDIFDKVT   77 (299)
Q Consensus        18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l----------~~~~i~i~~~~l~--~~~~g~~~~~i~~~f~~a~   77 (299)
                      ...+..++|+||+|||||+++++++..+          +..++.+++..+.  ..+.+..+..++.+|..+.
T Consensus       204 ~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~  275 (758)
T 1r6b_X          204 RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLE  275 (758)
T ss_dssp             SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHS
T ss_pred             ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHH
Confidence            3467789999999999999999999976          3344556655554  3566777788888887654

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=99.28  E-value=9e-12  Score=112.67  Aligned_cols=62  Identities=18%  Similarity=0.194  Sum_probs=54.5

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHH
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVT   77 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~   77 (299)
                      .+++.+.+++|+||||||||+++++||..++.+++.++|.++.+.+.|..+..++.+|..+.
T Consensus        31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~   92 (293)
T 3t15_A           31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA   92 (293)
T ss_dssp             TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHH
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHH
Confidence            35677889999999999999999999999999999999999999999999999999998874

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.22  E-value=5.4e-12  Score=128.14  Aligned_cols=56  Identities=23%  Similarity=0.473  Sum_probs=38.4

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhh----------cCCeecccchhhhhccccccHHHHHHHHHHHH
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELLTMWFGESEANVRDIFDKVT   77 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l----------~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~   77 (299)
                      .....++|+||||||||+++++||..+          +..++.+++   ...+.|+.+..++.+|..+.
T Consensus       199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~  264 (758)
T 3pxi_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIR  264 (758)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHH
T ss_pred             CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHHH
Confidence            456689999999999999999999987          556666666   44566777778888888765

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.22  E-value=2.3e-13  Score=122.15  Aligned_cols=57  Identities=23%  Similarity=0.135  Sum_probs=44.1

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773        204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .|+|+|+||||++++|+++.+.|.|  |++||+.|.. ++.-..|+|||||||||||+|.
T Consensus         4 ~~~~~~~di~g~~~~~~~l~~~i~~--~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa   61 (274)
T 2x8a_A            4 VPNVTWADIGALEDIREELTMAILA--PVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA   61 (274)
T ss_dssp             --------CCHHHHHHHHHHHHHTH--HHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred             CCCCCHHHhCCHHHHHHHHHHHHHH--HhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence            4789999999999999999999999  9999997753 5566778999999999999884

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=99.21  E-value=6e-13  Score=121.85  Aligned_cols=58  Identities=17%  Similarity=0.175  Sum_probs=54.4

Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        203 ARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       203 ~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      -.|.|+|+||+|++++|+.+.+.+.|  |++||++|..+.+...|+|||||||||||+|.
T Consensus        11 ~~~~~~~~di~G~~~~~~~l~~~i~~--~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la   68 (322)
T 3eie_A           11 EKPNVKWEDVAGLEGAKEALKEAVIL--PVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA   68 (322)
T ss_dssp             ECCCCCGGGSCSCHHHHHHHHHHTHH--HHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred             cCCCCCHHHhcChHHHHHHHHHHHHH--HHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence            35889999999999999999999999  99999999998888889999999999999875

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=99.20  E-value=5.1e-13  Score=124.13  Aligned_cols=65  Identities=17%  Similarity=0.168  Sum_probs=52.6

Q ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        196 FEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       196 f~~AL~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      +...+....|.++|+||+|++++++.+.+.+.|  |++||++|..+.+...|+|||||||||||+|.
T Consensus        37 ~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~--~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la  101 (355)
T 2qp9_X           37 LSSAILSEKPNVKWEDVAGLEGAKEALKEAVIL--PVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA  101 (355)
T ss_dssp             ----------CCCGGGSCCGGGHHHHHHHHTHH--HHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred             HhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHH--HHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence            334444455789999999999999999999999  99999999998888889999999999999874

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=99.16  E-value=1.1e-12  Score=125.41  Aligned_cols=63  Identities=19%  Similarity=0.178  Sum_probs=54.7

Q ss_pred             HHHHhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        198 EAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       198 ~AL~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      ..+....|.++|+||+|++++|+.+.+.+.|  |++||++|..+.....|+|||||||||||+|.
T Consensus       122 ~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~--p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA  184 (444)
T 2zan_A          122 GAIVIERPNVKWSDVAGLEGAKEALKEAVIL--PIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA  184 (444)
T ss_dssp             --CBCCCCCCCGGGSCSCHHHHHHHHHHHTH--HHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred             cceeccCCCCCHHHhcCHHHHHHHHHHHHHH--HhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence            3344445889999999999999999999999  99999999976666789999999999999874

>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*

Probab=99.15  E-value=1.6e-11  Score=90.16  Aligned_cols=64  Identities=28%  Similarity=0.422  Sum_probs=49.2

Q ss_pred             hcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHH
Q psy13773        121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAM  200 (299)
Q Consensus       121 l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL  200 (299)
                      +..++|+..||.+|+||||+||..+|++|++.|+++.                              ...|+.+||..|+
T Consensus        19 ~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~------------------------------~~~i~~~df~~Al   68 (83)
T 3aji_B           19 LSEEVDLEDYVARPDKISGADINSICQESGMLAVREN------------------------------RYIVLAKDFEKAY   68 (83)
T ss_dssp             BCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC------------------------------CSSBCHHHHHHHH
T ss_pred             CCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------------------------------cCCcCHHHHHHHH
Confidence            3468899999999999999999999999999998753                              1469999999999


Q ss_pred             HhccCCCCHHHHHHH
Q psy13773        201 RFARRSVNDADIRKY  215 (299)
Q Consensus       201 ~~~~PsVsw~DIggL  215 (299)
                      ++++|+++ +++..|
T Consensus        69 ~~~~ps~~-~~l~~y   82 (83)
T 3aji_B           69 KTVIKKDE-QEHEFY   82 (83)
T ss_dssp             HHHCC----------
T ss_pred             HHHccCch-HHHHhc
Confidence            99999999 776443

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=99.15  E-value=5.2e-13  Score=121.18  Aligned_cols=57  Identities=19%  Similarity=0.152  Sum_probs=52.3

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773        204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .|.|+|+||+|++++|+.+.+.+.|  |++||+.|.+ ++....|+|||||||||||+|.
T Consensus         9 ~~~~~~~di~G~~~~~~~l~~~v~~--~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la   66 (301)
T 3cf0_A            9 VPQVTWEDIGGLEDVKRELQELVQY--PVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA   66 (301)
T ss_dssp             CCCCCGGGSCSCHHHHHHHHHHHHH--HHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred             CCCCCHHHhCCHHHHHHHHHHHHHH--HhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence            3789999999999999999999999  9999999875 5677789999999999999985

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.12  E-value=6.9e-12  Score=116.59  Aligned_cols=160  Identities=16%  Similarity=0.135  Sum_probs=97.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.++|+||||||||||+|+|++...+  +.+.+++.++...    ....++.+..   ...+.++.......
T Consensus        47 vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~----~~~~~~~~r~---~Ig~v~Q~~~l~~~  119 (366)
T 3tui_C           47 VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTL----SESELTKARR---QIGMIFQHFNLLSS  119 (366)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSC----CHHHHHHHHT---TEEEECSSCCCCTT
T ss_pred             eEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcC----CHHHHHHHhC---cEEEEeCCCccCCC
Confidence            5788899999999999999999999999998765  5577777776543    2222222111   11122211111111


Q ss_pred             -hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         92 -ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        92 -~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                       ...+.+.. +....  -....+..+|+..+++.+++..++ ++...||||++|+++.+.++..-.              
T Consensus       120 ~TV~env~~-~~~~~--~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P--------------  182 (366)
T 3tui_C          120 RTVFGNVAL-PLELD--NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNP--------------  182 (366)
T ss_dssp             SCHHHHHHH-HHHHS--CCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCC--------------
T ss_pred             CCHHHHHHH-HHHhc--CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCC--------------
Confidence             11122211 10000  011123456778888888886554 566889999999998766543211              


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                             ..+..+|+....++.+...+.+.|++++
T Consensus       183 -------~lLLlDEPTs~LD~~~~~~i~~lL~~l~  210 (366)
T 3tui_C          183 -------KVLLCDQATSALDPATTRSILELLKDIN  210 (366)
T ss_dssp             -------SEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred             -------CEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence                   1244667777888888888888877763

>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}

Probab=99.12  E-value=5.7e-11  Score=87.90  Aligned_cols=66  Identities=26%  Similarity=0.410  Sum_probs=56.9

Q ss_pred             CccHHHHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccc
Q psy13773        111 LEGVKRELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMET  181 (299)
Q Consensus       111 ~p~~~~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~  181 (299)
                      .|+.++|.+         .+..++|++.||.+|+||||+||..||++|++.|+++..                       
T Consensus        10 ~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~-----------------------   66 (86)
T 2krk_A           10 HPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR-----------------------   66 (86)
T ss_dssp             CCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTC-----------------------
T ss_pred             CcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcC-----------------------
Confidence            588888876         234689999999999999999999999999999988641                       


Q ss_pred             CCCCCCcccccHHHHHHHHHhccCC
Q psy13773        182 EDEDDPVPEITRAHFEEAMRFARRS  206 (299)
Q Consensus       182 ~~~~~~~~~it~~Df~~AL~~~~Ps  206 (299)
                             ..|+.+||++|+++++|.
T Consensus        67 -------~~I~~~df~~Al~~v~p~   84 (86)
T 2krk_A           67 -------VHVTQEDFEMAVAKVMQK   84 (86)
T ss_dssp             -------SEECHHHHHHHHHHHHCC
T ss_pred             -------CCCCHHHHHHHHHHHccC
Confidence                   479999999999999874

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.07  E-value=2.5e-11  Score=108.37  Aligned_cols=161  Identities=14%  Similarity=0.129  Sum_probs=97.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC-Cc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS-SP   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~-~~   90 (299)
                      ++|.+.+++.++|+||||||||||+|+|++.+.  .+.+.+++.++...    ....++.      ...+..+.... ..
T Consensus        30 vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~----~~~~~~~------~i~~v~q~~~~~~~   99 (266)
T 4g1u_C           30 VSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSW----QPKALAR------TRAVMRQYSELAFP   99 (266)
T ss_dssp             EEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTS----CHHHHHH------HEEEECSCCCCCSC
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcC----CHHHHhh------eEEEEecCCccCCC
Confidence            567889999999999999999999999999775  46677887776432    1111111      11122221111 11


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+.....     ........+++..+++.+++..+. +....||||++|+++...++..+-.             
T Consensus       100 ~tv~e~l~~~~~-----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~-------------  161 (266)
T 4g1u_C          100 FSVSEVIQMGRA-----PYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQ-------------  161 (266)
T ss_dssp             CBHHHHHHGGGT-----TSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCC-------------
T ss_pred             CCHHHHHHhhhh-----hcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccc-------------
Confidence            122222211100     011234566777888888885554 4557899999999988765543100             


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                        .......+..+|+....++.+...+.+.|++.+
T Consensus       162 --~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~  194 (266)
T 4g1u_C          162 --PQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLT  194 (266)
T ss_dssp             --SSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHH
T ss_pred             --cCCCCCEEEEeCccccCCHHHHHHHHHHHHHHH
Confidence              000011345677777888888888888877663

>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*

Probab=99.07  E-value=1.5e-10  Score=85.97  Aligned_cols=60  Identities=20%  Similarity=0.310  Sum_probs=50.4

Q ss_pred             hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHH
Q psy13773        120 ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEA  199 (299)
Q Consensus       120 ~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~A  199 (299)
                      .+..++|+..||.+|+||||+||..||.+|++.|+++..                              ..|+.+||+.|
T Consensus        18 ~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~------------------------------~~i~~~df~~A   67 (88)
T 3vlf_B           18 SVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR------------------------------KVATEKDFLKA   67 (88)
T ss_dssp             CBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSC------------------------------SSBCHHHHHHH
T ss_pred             CCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcc------------------------------ccCCHHHHHHH
Confidence            345789999999999999999999999999999998742                              36999999999


Q ss_pred             HHhccCCCCH
Q psy13773        200 MRFARRSVND  209 (299)
Q Consensus       200 L~~~~PsVsw  209 (299)
                      ++++++.+..
T Consensus        68 l~~v~~~~~~   77 (88)
T 3vlf_B           68 VDKVISGYKK   77 (88)
T ss_dssp             HHHHTC----
T ss_pred             HHHHhcCccc
Confidence            9999987644

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.07  E-value=2.4e-11  Score=113.58  Aligned_cols=155  Identities=14%  Similarity=0.167  Sum_probs=93.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.+.|+||||||||||+|+|++...+  +.+.+++.++......  .+.+..+|+          .....+.
T Consensus        22 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig~VfQ----------~~~l~p~   89 (381)
T 3rlf_A           22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGMVFQ----------SYALYPH   89 (381)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEEEECT----------TCCCCTT
T ss_pred             eEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEEEEec----------CCcCCCC
Confidence            5778899999999999999999999999998765  5567777766432111  111111111          1111111


Q ss_pred             -hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         92 -ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        92 -~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                       ...+.+..   .+........+..+|+..+++.+++..+. ++...||||++|+++...++..-.              
T Consensus        90 ltV~eni~~---~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P--------------  152 (381)
T 3rlf_A           90 LSVAENMSF---GLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP--------------  152 (381)
T ss_dssp             SCHHHHHTH---HHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCC--------------
T ss_pred             CCHHHHHHH---HHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCC--------------
Confidence             11111110   00000011123456778888888886554 566889999999998776554311              


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                             ..+..+|+....++.+.+.+.+.|++.+
T Consensus       153 -------~lLLLDEPts~LD~~~~~~l~~~l~~l~  180 (381)
T 3rlf_A          153 -------SVFLLDEPLSNLDAALRVQMRIEISRLH  180 (381)
T ss_dssp             -------SEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred             -------CEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence                   1244666777777777777777776653

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.05  E-value=2.5e-11  Score=106.49  Aligned_cols=162  Identities=12%  Similarity=0.117  Sum_probs=95.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.++|+||||||||||+|+|++...+  +.+.+++.++...    ........+..  ...+.++.......
T Consensus        24 isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~----~~~~~~~~~~~--~i~~v~Q~~~l~~~   97 (235)
T 3tif_A           24 VNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDL----DDDELTKIRRD--KIGFVFQQFNLIPL   97 (235)
T ss_dssp             EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTC----CHHHHHHHHHH--HEEEECTTCCCCTT
T ss_pred             eeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccC----CHHHHHHHhhc--cEEEEecCCccCCC
Confidence            5778899999999999999999999999998765  4566777665432    11222111111  11222222221111


Q ss_pred             -hhhHHHhhcCccchh-hcCCCccHHHHHhhhcccCCHHH-H-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 -ALRETIVEVPNITWE-DIGGLEGVKRELQELVQDVDLNY-I-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        92 -~~~~~l~~l~~~l~~-~~~r~p~~~~R~~~l~~~v~l~~-L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                       ...+.+.. +..... ......+..+++..+++.+++.. + .+....||||++|+++...++..-.            
T Consensus        98 ~tv~enl~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p------------  164 (235)
T 3tif_A           98 LTALENVEL-PLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNP------------  164 (235)
T ss_dssp             SCHHHHHHH-HHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCC------------
T ss_pred             CcHHHHHHH-HHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCC------------
Confidence             22222211 000000 00011233456667777777744 3 4567889999999998766543311            


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                               .-+..+|+....++.+.+.+.+.|++.
T Consensus       165 ---------~llllDEPts~LD~~~~~~i~~~l~~l  191 (235)
T 3tif_A          165 ---------PIILADQPTWALDSKTGEKIMQLLKKL  191 (235)
T ss_dssp             ---------SEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred             ---------CEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence                     135567788888888888888888766

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.02  E-value=3.6e-11  Score=111.60  Aligned_cols=155  Identities=16%  Similarity=0.228  Sum_probs=90.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhhcccc--ccHHHHHHHHHHHHHHHHhhhhcCCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFG--ESEANVRDIFDKVTMENFRYAMGKSS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g--~~~~~i~~~f~~a~~~~~~~~~~~~~   89 (299)
                      ++|.+.+++.+.|+||||||||||+|+|++...+  +.+.+++.++......  ...+.+..+|+          .....
T Consensus        23 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ----------~~~l~   92 (359)
T 3fvq_A           23 ISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQ----------EGVLF   92 (359)
T ss_dssp             EEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECT----------TCCCC
T ss_pred             eEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeC----------CCcCC
Confidence            5778899999999999999999999999998765  5577777766321000  00111111111          11111


Q ss_pred             ch-hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PS-ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        90 ~~-~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                      +. ...+.+. +...  ..........+|+..+++.+++..++ ++...||||++|+++...++..-.            
T Consensus        93 p~ltV~eni~-~~l~--~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P------------  157 (359)
T 3fvq_A           93 PHLTVYRNIA-YGLG--NGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDP------------  157 (359)
T ss_dssp             TTSCHHHHHH-TTST--TSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC------------
T ss_pred             CCCCHHHHHH-HHHH--HcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC------------
Confidence            11 1112221 1100  00011234456788888888886654 566889999999998766554311            


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHh
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRF  202 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~  202 (299)
                               ..+..+|+....++.+.+.+.+.+.+
T Consensus       158 ---------~lLLLDEPts~LD~~~r~~l~~~l~~  183 (359)
T 3fvq_A          158 ---------ELILLDEPFSALDEQLRRQIREDMIA  183 (359)
T ss_dssp             ---------SEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             ---------CEEEEeCCcccCCHHHHHHHHHHHHH
Confidence                     12445566666666666666655444

>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}

Probab=99.00  E-value=4.8e-10  Score=81.19  Aligned_cols=65  Identities=26%  Similarity=0.414  Sum_probs=54.3

Q ss_pred             CccHHHHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccc
Q psy13773        111 LEGVKRELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMET  181 (299)
Q Consensus       111 ~p~~~~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~  181 (299)
                      +|+..+|.+         .+..++++..||.+|+||||+||..+|++|++.|+++..                       
T Consensus         2 lPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~-----------------------   58 (78)
T 3kw6_A            2 PPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR-----------------------   58 (78)
T ss_dssp             CCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC-----------------------
T ss_pred             cCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC-----------------------
Confidence            466777665         234689999999999999999999999999999988631                       


Q ss_pred             CCCCCCcccccHHHHHHHHHhccC
Q psy13773        182 EDEDDPVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       182 ~~~~~~~~~it~~Df~~AL~~~~P  205 (299)
                             ..|+.+||..|++++..
T Consensus        59 -------~~i~~~d~~~Al~~v~~   75 (78)
T 3kw6_A           59 -------VHVTQEDFEMAVAKVMQ   75 (78)
T ss_dssp             -------SEECHHHHHHHHHHHHC
T ss_pred             -------CCCCHHHHHHHHHHHHh
Confidence                   46999999999998754

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=98.98  E-value=8.2e-10  Score=113.55  Aligned_cols=60  Identities=23%  Similarity=0.449  Sum_probs=42.1

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhh----------cCCeecccchhhh--hccccccHHHHHHHHHHHHH
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELL--TMWFGESEANVRDIFDKVTM   78 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l----------~~~~i~i~~~~l~--~~~~g~~~~~i~~~f~~a~~   78 (299)
                      .....++|+||||||||++++++|..+          +..++.+++..+.  ..+.++.+..++.+|..+..
T Consensus       189 ~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~  260 (854)
T 1qvr_A          189 RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQ  260 (854)
T ss_dssp             SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHT
T ss_pred             CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHh
Confidence            345679999999999999999999987          5667888888776  45667777888888877653

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.98  E-value=4.6e-11  Score=103.97  Aligned_cols=159  Identities=13%  Similarity=0.157  Sum_probs=94.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|+||||||||||+|+|++.+.+  +.+.+++.++...    .......+..  +...+.++...... 
T Consensus        23 vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----~~~~~~~~~~--~~i~~v~q~~~l~~~   96 (224)
T 2pcj_A           23 ISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYT----NEKELSLLRN--RKLGFVFQFHYLIPE   96 (224)
T ss_dssp             EEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSS----CHHHHHHHHH--HHEEEECSSCCCCTT
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCC----CHHHHHHHHh--CcEEEEecCcccCCC
Confidence            5677899999999999999999999999998765  4566666655321    1111111110  11112222111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCC--ccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVPNITWEDIGGL--EGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~--p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                      ....+.+.. ...    ....  ....+++..+++.+++..+ .+....||||+.|+++...++..-             
T Consensus        97 ~tv~e~l~~-~~~----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~-------------  158 (224)
T 2pcj_A           97 LTALENVIV-PML----KMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANE-------------  158 (224)
T ss_dssp             SCHHHHHHH-HHH----HTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTC-------------
T ss_pred             CCHHHHHHh-HHH----HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcC-------------
Confidence            112222211 000    0111  2234567778888888554 455678999999998876544321             


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                           +   .-+..+|+....++.+.+.+.+.|++.+
T Consensus       159 -----p---~lllLDEPt~~LD~~~~~~~~~~l~~l~  187 (224)
T 2pcj_A          159 -----P---ILLFADEPTGNLDSANTKRVMDIFLKIN  187 (224)
T ss_dssp             -----C---SEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred             -----C---CEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence                 1   1345677778888888888888887763

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=98.96  E-value=2.2e-10  Score=101.24  Aligned_cols=159  Identities=14%  Similarity=0.170  Sum_probs=95.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC-CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-h
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA-NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-S   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~-~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-~   91 (299)
                      ++|.+.+++.++|.||||||||||+|+|++.+.+ +.+.+++.++...    ....++      +...+.++...... .
T Consensus        19 vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~----~~~~~~------~~i~~v~q~~~~~~~~   88 (249)
T 2qi9_C           19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAW----SATKLA------LHRAYLSQQQTPPFAT   88 (249)
T ss_dssp             EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGS----CHHHHH------HHEEEECSCCCCCTTC
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcC----CHHHHh------ceEEEECCCCccCCCC
Confidence            4677899999999999999999999999997654 5556666554321    111111      11122222211111 1


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLA  170 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~  170 (299)
                      ...+.+.. ...     ... . .+++..+++.+++..+ .+....||||+.|+++...++..-.+.             
T Consensus        89 tv~e~l~~-~~~-----~~~-~-~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~-------------  147 (249)
T 2qi9_C           89 PVWHYLTL-HQH-----DKT-R-TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQ-------------  147 (249)
T ss_dssp             BHHHHHHT-TCS-----STT-C-HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTT-------------
T ss_pred             cHHHHHHH-hhc-----cCC-c-HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCc-------------
Confidence            22233221 100     011 1 5667777888888554 455678999999999887665542210             


Q ss_pred             CCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        171 GNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                       .......+..+|+....++.+.+.+.+.|++.+
T Consensus       148 -~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~  180 (249)
T 2qi9_C          148 -ANPAGQLLLLDEPMNSLDVAQQSALDKILSALS  180 (249)
T ss_dssp             -TCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHH
T ss_pred             -CCCCCeEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence             000001345778888888899999998888763

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=98.96  E-value=1.7e-10  Score=102.76  Aligned_cols=163  Identities=12%  Similarity=0.122  Sum_probs=96.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhh-----c-cccccHHHHHHHHHHHHHHHHhhhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLT-----M-WFGESEANVRDIFDKVTMENFRYAM   85 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~-----~-~~g~~~~~i~~~f~~a~~~~~~~~~   85 (299)
                      ++|.+.+++.++|+||||||||||+|+|++.+.+  +.+.+++.++..     . +..........+.   +...+.++.
T Consensus        25 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~v~Q~  101 (262)
T 1b0u_A           25 VSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLR---TRLTMVFQH  101 (262)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHH---HHEEEECSS
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHh---cceEEEecC
Confidence            5778899999999999999999999999998765  556677765531     0 0000111111111   111222221


Q ss_pred             cCCCch-hhhHHHhhcCccchhhcCCC--ccHHHHHhhhcccCCHHHH--HHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         86 GKSSPS-ALRETIVEVPNITWEDIGGL--EGVKRELQELVQDVDLNYI--AKVTNGFSGADLTEICQRACKLAIRQSIET  160 (299)
Q Consensus        86 ~~~~~~-~~~~~l~~l~~~l~~~~~r~--p~~~~R~~~l~~~v~l~~L--A~~t~glSggDl~~Lv~~A~~~a~~r~~~~  160 (299)
                      ...... ...+.+.....    .....  .+..+|+..+++.+++..+  .+....||||++|+++...++..-.     
T Consensus       102 ~~l~~~ltv~e~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p-----  172 (262)
T 1b0u_A          102 FNLWSHMTVLENVMEAPI----QVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEP-----  172 (262)
T ss_dssp             CCCCTTSCHHHHHHHHHH----HTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCC-----
T ss_pred             cccCCCCcHHHHHHhhHH----HhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCC-----
Confidence            111111 22222211000    00111  2234667788888888554  4566789999999998766554311     


Q ss_pred             HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                      ..+..+|+....++.+.+.+.+.|++.+
T Consensus       173 ----------------~lllLDEPts~LD~~~~~~~~~~l~~l~  200 (262)
T 1b0u_A          173 ----------------DVLLFDEPTSALDPELVGEVLRIMQQLA  200 (262)
T ss_dssp             ----------------SEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred             ----------------CEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence                            1245677778888888888888887763

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=98.95  E-value=5.5e-11  Score=110.27  Aligned_cols=152  Identities=14%  Similarity=0.171  Sum_probs=91.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.+.|.||||||||||+|+|++...+  +.+.+++.++.....  ..+.+..+|+          .....+ 
T Consensus        34 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~v~Q----------~~~l~~~  101 (355)
T 1z47_A           34 VSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNVGLVFQ----------NYALFQH  101 (355)
T ss_dssp             EEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSEEEECG----------GGCCCTT
T ss_pred             eEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcEEEEec----------CcccCCC
Confidence            5778899999999999999999999999998765  556677766532110  0011111111          111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCC--ccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVPNITWEDIGGL--EGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~--p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                      ....+.+.- .  +.  ....  .+..+|+..+++.+++..++ ++...||||++|+++...++..-.            
T Consensus       102 ltv~eni~~-~--l~--~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P------------  164 (355)
T 1z47_A          102 MTVYDNVSF-G--LR--EKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRP------------  164 (355)
T ss_dssp             SCHHHHHHH-H--HH--HTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC------------
T ss_pred             CCHHHHHHH-H--HH--HcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCC------------
Confidence            111111110 0  00  0111  23356778888888886654 556789999999988765543311            


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                               ..+..+|+....++.+.+.+.+.|++.
T Consensus       165 ---------~lLLLDEP~s~LD~~~r~~l~~~l~~l  191 (355)
T 1z47_A          165 ---------QVLLFDEPFAAIDTQIRRELRTFVRQV  191 (355)
T ss_dssp             ---------SEEEEESTTCCSSHHHHHHHHHHHHHH
T ss_pred             ---------CEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence                     124466677777777777777777665

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.95  E-value=7.4e-11  Score=105.86  Aligned_cols=159  Identities=6%  Similarity=0.057  Sum_probs=95.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KSS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~~   89 (299)
                      ++|.+.+++.++|+||||||||||+|+|++.+.+  +.+.+++.++..     .....+.+..   ...+.++..  ...
T Consensus        27 isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~-----~~~~~~~~~~---~ig~v~Q~~~~~~~   98 (275)
T 3gfo_A           27 INMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDY-----SRKGIMKLRE---SIGIVFQDPDNQLF   98 (275)
T ss_dssp             EEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCC-----SHHHHHHHHH---SEEEECSSGGGTCC
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCc-----ccccHHHHhC---cEEEEEcCcccccc
Confidence            5677899999999999999999999999998765  456677766521     1111111111   111111111  011


Q ss_pred             chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                      .....+.+.....   ..-....+..+|+..+++.+++..++ +....||||++|+++...++..-.             
T Consensus        99 ~~tv~e~l~~~~~---~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P-------------  162 (275)
T 3gfo_A           99 SASVYQDVSFGAV---NMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP-------------  162 (275)
T ss_dssp             SSBHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCC-------------
T ss_pred             cCcHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCC-------------
Confidence            1112222211000   00001123456777888888886655 455789999999998766554311             


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                              ..+..+|+....++.+.+.|.+.|++.+
T Consensus       163 --------~lLlLDEPts~LD~~~~~~i~~~l~~l~  190 (275)
T 3gfo_A          163 --------KVLILDEPTAGLDPMGVSEIMKLLVEMQ  190 (275)
T ss_dssp             --------SEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred             --------CEEEEECccccCCHHHHHHHHHHHHHHH
Confidence                    1245677788888888888888877653

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=98.95  E-value=9.6e-11  Score=104.43  Aligned_cols=158  Identities=13%  Similarity=0.154  Sum_probs=95.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.++|+||||||||||+|+|++.+.+  +.+.+++.++. . ....   ...+.   +...+.++.......
T Consensus        43 vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~-~-~~~~---~~~~~---~~i~~v~Q~~~l~~~  114 (263)
T 2olj_A           43 INVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLK-A-KDTN---LNKVR---EEVGMVFQRFNLFPH  114 (263)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESS-S-TTCC---HHHHH---HHEEEECSSCCCCTT
T ss_pred             eEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECC-C-cccc---HHHHh---CcEEEEeCCCcCCCC
Confidence            5778899999999999999999999999998765  55667776553 1 0011   11111   111222221111111


Q ss_pred             -hhhHHHhhcCccchhhcCCC--ccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 -ALRETIVEVPNITWEDIGGL--EGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        92 -~~~~~l~~l~~~l~~~~~r~--p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                       ...+.+.....    .....  .+..+|+..+++.+++..+ .+....||||++|+++...++..-.            
T Consensus       115 ~tv~e~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p------------  178 (263)
T 2olj_A          115 MTVLNNITLAPM----KVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEP------------  178 (263)
T ss_dssp             SCHHHHHHHHHH----HTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC------------
T ss_pred             CCHHHHHHHHHH----HHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCC------------
Confidence             22222211000    00111  2234567788888888554 4556789999999998766544311            


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                               ..+..+|+....++.+.+.+.+.|++.+
T Consensus       179 ---------~lllLDEPts~LD~~~~~~~~~~l~~l~  206 (263)
T 2olj_A          179 ---------KIMLFDEPTSALDPEMVGEVLSVMKQLA  206 (263)
T ss_dssp             ---------SEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred             ---------CEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence                     1355778888888899999998888763

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=98.95  E-value=2.5e-10  Score=100.79  Aligned_cols=150  Identities=11%  Similarity=0.081  Sum_probs=89.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.++|+||||||||||+|+|++.+.+  +.+.+++.++...    ....++      +...+.++.......
T Consensus        28 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~----~~~~~~------~~i~~v~Q~~~l~~~   97 (247)
T 2ff7_A           28 INLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALA----DPNWLR------RQVGVVLQDNVLLNR   97 (247)
T ss_dssp             EEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTS----CHHHHH------HHEEEECSSCCCTTS
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhC----CHHHHH------hcEEEEeCCCccccc
Confidence            5677899999999999999999999999998765  4566776665321    111111      111222221111111


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHHh------------cCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKV------------TNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~------------t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      ...+.+.. ..       . ....+++..+++.+++..+..+            ...||||++|+++...++..-.    
T Consensus        98 tv~enl~~-~~-------~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p----  164 (247)
T 2ff7_A           98 SIIDNISL-AN-------P-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP----  164 (247)
T ss_dssp             BHHHHHTT-TC-------T-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC----
T ss_pred             cHHHHHhc-cC-------C-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC----
Confidence            22222211 10       0 0113345555566666555443            3589999999998766543211    


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                       .-+..+|+....++.+.+.+.+.|++.
T Consensus       165 -----------------~lllLDEPts~LD~~~~~~i~~~l~~~  191 (247)
T 2ff7_A          165 -----------------KILIFDEATSALDYESEHVIMRNMHKI  191 (247)
T ss_dssp             -----------------SEEEECCCCSCCCHHHHHHHHHHHHHH
T ss_pred             -----------------CEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence                             135567778888888888888887665

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=98.94  E-value=6.8e-11  Score=109.87  Aligned_cols=152  Identities=14%  Similarity=0.185  Sum_probs=92.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.+.|.||||||||||+|+|++...+  +.+.+++.++.....  ..+.+          .+.++.....+.
T Consensus        22 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~i----------g~v~Q~~~l~~~   89 (359)
T 2yyz_A           22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPP--KYREV----------GMVFQNYALYPH   89 (359)
T ss_dssp             EEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG--GGTTE----------EEECSSCCCCTT
T ss_pred             eEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCCh--hhCcE----------EEEecCcccCCC
Confidence            5778899999999999999999999999998764  556777766543211  00111          111111111111


Q ss_pred             -hhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 -ALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        92 -~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                       ...+.+. +...    ....+  +..+|+..+++.+++..+. ++...||||++|+++...++..-.            
T Consensus        90 ltv~eni~-~~~~----~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P------------  152 (359)
T 2yyz_A           90 MTVFENIA-FPLR----ARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQP------------  152 (359)
T ss_dssp             SCHHHHHH-GGGS----SSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC------------
T ss_pred             CCHHHHHH-HHHH----hcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC------------
Confidence             1122221 1100    01112  2245777888888886554 556789999999988765443311            


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                               ..+..+|+....++.+.+.+.+.|++.
T Consensus       153 ---------~lLLLDEP~s~LD~~~r~~l~~~l~~l  179 (359)
T 2yyz_A          153 ---------KVLLFDEPLSNLDANLRMIMRAEIKHL  179 (359)
T ss_dssp             ---------SEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred             ---------CEEEEECCcccCCHHHHHHHHHHHHHH
Confidence                     124466677777777777777777665

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=98.93  E-value=7.2e-11  Score=109.82  Aligned_cols=152  Identities=13%  Similarity=0.221  Sum_probs=90.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.+.|.||||||||||+|+|++...+  +.+.+++.++.....  ..+.+          .+.++.....+.
T Consensus        22 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~i----------g~v~Q~~~l~~~   89 (362)
T 2it1_A           22 INLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPP--KDRNV----------GLVFQNWALYPH   89 (362)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG--GGTTE----------EEECTTCCCCTT
T ss_pred             eEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH--hHCcE----------EEEecCcccCCC
Confidence            5778899999999999999999999999998765  556677766543211  01111          111111111111


Q ss_pred             -hhhHHHhhcCccchhhcCCC--ccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 -ALRETIVEVPNITWEDIGGL--EGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        92 -~~~~~l~~l~~~l~~~~~r~--p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                       ...+.+.. .  +  .....  .+..+|+..+++.+++..+. ++...||||++|+++...++..-.+           
T Consensus        90 ltv~eni~~-~--~--~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~-----------  153 (362)
T 2it1_A           90 MTVYKNIAF-P--L--ELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPE-----------  153 (362)
T ss_dssp             SCHHHHHHH-H--H--HHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCS-----------
T ss_pred             CCHHHHHHH-H--H--HhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCC-----------
Confidence             11121110 0  0  00111  23356777888888886554 5567899999999887665443111           


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                .+..+|+....++.+.+.+.+.|++.
T Consensus       154 ----------lLLLDEP~s~LD~~~r~~l~~~l~~l  179 (362)
T 2it1_A          154 ----------VLLLDEPLSNLDALLRLEVRAELKRL  179 (362)
T ss_dssp             ----------EEEEESGGGGSCHHHHHHHHHHHHHH
T ss_pred             ----------EEEEECccccCCHHHHHHHHHHHHHH
Confidence                      23455666666677777777776665

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=98.93  E-value=8.8e-11  Score=108.94  Aligned_cols=155  Identities=12%  Similarity=0.166  Sum_probs=94.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhhcc---ccccHHHHHHHHHHHHHHHHhhhhcCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMW---FGESEANVRDIFDKVTMENFRYAMGKS   88 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~---~g~~~~~i~~~f~~a~~~~~~~~~~~~   88 (299)
                      ++|.+.+++.+.|+||||||||||+|+|++...+  +.+.+++.++....   .....+.+          .+.++....
T Consensus        24 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~i----------g~v~Q~~~l   93 (353)
T 1oxx_K           24 VNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKI----------GMVFQTWAL   93 (353)
T ss_dssp             EEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCE----------EEEETTSCC
T ss_pred             eEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCE----------EEEeCCCcc
Confidence            5778899999999999999999999999998765  55667776653210   00000111          111111111


Q ss_pred             Cch-hhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         89 SPS-ALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRR  164 (299)
Q Consensus        89 ~~~-~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~  164 (299)
                      .+. ...+.+. +...    ....+  +..+|+..+++.+++..++ ++...||||++|+++...++..-.         
T Consensus        94 ~~~ltv~eni~-~~~~----~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P---------  159 (353)
T 1oxx_K           94 YPNLTAFENIA-FPLT----NMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDP---------  159 (353)
T ss_dssp             CTTSCHHHHHH-GGGT----TSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC---------
T ss_pred             CCCCCHHHHHH-HHHH----HcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCC---------
Confidence            111 1122221 1100    01112  3356777888889986654 556789999999988765443211         


Q ss_pred             HHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        165 EREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                  ..+..+|+....++.+.+.+.+.|++.+
T Consensus       160 ------------~lLLLDEP~s~LD~~~r~~l~~~l~~l~  187 (353)
T 1oxx_K          160 ------------SLLLLDEPFSNLDARMRDSARALVKEVQ  187 (353)
T ss_dssp             ------------SEEEEESTTTTSCGGGHHHHHHHHHHHH
T ss_pred             ------------CEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence                        1244667777888888888888877763

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.92  E-value=9.9e-11  Score=103.94  Aligned_cols=160  Identities=11%  Similarity=0.086  Sum_probs=92.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|+||||||||||+|+|++.+.+  +.+.+++.++...    ...   ..+.  ....+.++...... 
T Consensus        26 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~----~~~---~~~~--~~i~~v~q~~~l~~~   96 (257)
T 1g6h_A           26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNK----EPA---ELYH--YGIVRTFQTPQPLKE   96 (257)
T ss_dssp             ECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTC----CHH---HHHH--HTEEECCCCCGGGGG
T ss_pred             eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC----CHH---HHHh--CCEEEEccCCccCCC
Confidence            5678899999999999999999999999998765  5566776655321    100   0000  00011111110000 


Q ss_pred             hhhhHHHhhcCccchhhc----------CCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVPNITWEDI----------GGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~----------~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      ....+.+...........          .......+++..+++.+++..++ +....||||++|+++...++..-.    
T Consensus        97 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p----  172 (257)
T 1g6h_A           97 MTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNP----  172 (257)
T ss_dssp             SBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCC----
T ss_pred             CcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCC----
Confidence            111122211000000000          01123346677888888886554 556789999999998766544311    


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                       .-+..+|+....++.+.+.+.+.|++.
T Consensus       173 -----------------~lllLDEPts~LD~~~~~~l~~~l~~l  199 (257)
T 1g6h_A          173 -----------------KMIVMDEPIAGVAPGLAHDIFNHVLEL  199 (257)
T ss_dssp             -----------------SEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             -----------------CEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence                             124467777788888888888877655

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=98.92  E-value=8.9e-11  Score=109.63  Aligned_cols=154  Identities=12%  Similarity=0.222  Sum_probs=90.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhhcc----ccccHHHHHHHHHHHHHHHHhhhhcC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMW----FGESEANVRDIFDKVTMENFRYAMGK   87 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~----~g~~~~~i~~~f~~a~~~~~~~~~~~   87 (299)
                      ++|.+.+++.+.|+||||||||||+|+|++...+  +.+.+++.++....    .....+.+          .+.++...
T Consensus        22 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~i----------g~v~Q~~~   91 (372)
T 1g29_1           22 MSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDI----------AMVFQSYA   91 (372)
T ss_dssp             EEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSE----------EEECSCCC
T ss_pred             eEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCE----------EEEeCCCc
Confidence            5778899999999999999999999999998764  55677776653310    00000111          11111111


Q ss_pred             CCch-hhhHHHhhcCccchhhcCCC--ccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         88 SSPS-ALRETIVEVPNITWEDIGGL--EGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIR  163 (299)
Q Consensus        88 ~~~~-~~~~~l~~l~~~l~~~~~r~--p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~  163 (299)
                      .-+. ...+.+.- .  +  .....  .+..+|+..+++.+++..+. ++...||||++|+++...++..-.+       
T Consensus        92 l~~~ltv~eni~~-~--~--~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~-------  159 (372)
T 1g29_1           92 LYPHMTVYDNIAF-P--L--KLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQ-------  159 (372)
T ss_dssp             CCTTSCHHHHHHH-H--H--HHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCS-------
T ss_pred             cCCCCCHHHHHHH-H--H--HHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCC-------
Confidence            1111 11111110 0  0  00111  23356777888888886554 5567899999999987665543111       


Q ss_pred             HHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        164 REREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                    .+..+|+....++.+.+.+.+.|++.
T Consensus       160 --------------lLLLDEP~s~LD~~~r~~l~~~l~~l  185 (372)
T 1g29_1          160 --------------VFLMDEPLSNLDAKLRVRMRAELKKL  185 (372)
T ss_dssp             --------------EEEEECTTTTSCHHHHHHHHHHHHHH
T ss_pred             --------------EEEECCCCccCCHHHHHHHHHHHHHH
Confidence                          24456666677777777777776665

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=98.92  E-value=7.4e-11  Score=110.10  Aligned_cols=153  Identities=13%  Similarity=0.221  Sum_probs=91.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.+.|.||||||||||+|+|++...+  +.+.+++.++.....  ..+.+..+|+...   +.      ...
T Consensus        30 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~v~Q~~~---l~------~~l   98 (372)
T 1v43_A           30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP--KDRNISMVFQSYA---VW------PHM   98 (372)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG--GGGTEEEEEC---------------CC
T ss_pred             eEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCCh--hhCcEEEEecCcc---cC------CCC
Confidence            5778899999999999999999999999998764  556777766543211  0111111121100   00      000


Q ss_pred             hhhHHHhhcCccchhhcCCC--ccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGL--EGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~--p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                      ...+.+. +...    ....  .+..+|+..+++.+++..++ ++...||||++|+++...++..-.+            
T Consensus        99 tv~eni~-~~~~----~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~------------  161 (372)
T 1v43_A           99 TVYENIA-FPLK----IKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPD------------  161 (372)
T ss_dssp             CHHHHHH-TTCC------CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCS------------
T ss_pred             CHHHHHH-HHHH----hcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCC------------
Confidence            1112211 1100    0111  22356778888889986654 5668899999999887665443111            


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                               .+..+|+....++.+.+.+.+.|++.
T Consensus       162 ---------lLLLDEP~s~LD~~~r~~l~~~l~~l  187 (372)
T 1v43_A          162 ---------VLLMDEPLSNLDAKLRVAMRAEIKKL  187 (372)
T ss_dssp             ---------EEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred             ---------EEEEcCCCccCCHHHHHHHHHHHHHH
Confidence                     24456666777777777777777665

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.91  E-value=3.9e-11  Score=107.94  Aligned_cols=56  Identities=20%  Similarity=0.088  Sum_probs=50.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        205 RSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       205 PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      |.++|+||+|.+.+++.+.+.+.+  |++||++|...-....++|+|||||||||+|.
T Consensus        16 ~~~~~~~i~G~~~~~~~l~~~i~~--~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la   71 (297)
T 3b9p_A           16 AKVEWTDIAGQDVAKQALQEMVIL--PSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA   71 (297)
T ss_dssp             SCCCGGGSCCCHHHHHHHHHHTHH--HHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred             CCCCHHHhCChHHHHHHHHHHHHh--hhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence            669999999999999999999999  99999999855445679999999999999875

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=98.90  E-value=7e-11  Score=109.70  Aligned_cols=57  Identities=19%  Similarity=0.098  Sum_probs=52.7

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .|.++|+||.|++.+++.+.+.+.|  |+++|++|....+...++|||||||||||+|.
T Consensus        78 ~~~~~~~~i~G~~~~~~~l~~~i~~--~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la  134 (357)
T 3d8b_A           78 GPPVNWEDIAGVEFAKATIKEIVVW--PMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG  134 (357)
T ss_dssp             SCCCCGGGSCSCHHHHHHHHHHTHH--HHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred             CCCCCHHHhCChHHHHHHHHHHHHH--HhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence            3679999999999999999999999  99999999877677789999999999999874

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=98.90  E-value=4.5e-10  Score=102.18  Aligned_cols=151  Identities=13%  Similarity=0.212  Sum_probs=88.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.++|+||||||||||+++|++.+.+  +.|.+++.++...    ....++.      ...+.++....-..
T Consensus        73 isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~----~~~~~r~------~i~~v~Q~~~lf~~  142 (306)
T 3nh6_A           73 VSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQV----TQASLRS------HIGVVPQDTVLFND  142 (306)
T ss_dssp             EEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSB----CHHHHHH------TEEEECSSCCCCSE
T ss_pred             eeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccC----CHHHHhc------ceEEEecCCccCcc
Confidence            5677899999999999999999999999998765  5677788776543    1111111      01122221111111


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHh-----------cCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKV-----------TNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~-----------t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      ..++.+.-         .......+++...++.+++.. +...           ...||||+.|+++.+.++..-.    
T Consensus       143 Tv~eNi~~---------~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p----  209 (306)
T 3nh6_A          143 TIADNIRY---------GRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAP----  209 (306)
T ss_dssp             EHHHHHHT---------TSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC----
T ss_pred             cHHHHHHh---------hcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCC----
Confidence            22222211         000111223333344444432 2222           2479999999998876554311    


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                       .-+..+|+....++.+...+.++|.+..
T Consensus       210 -----------------~iLlLDEPts~LD~~~~~~i~~~l~~l~  237 (306)
T 3nh6_A          210 -----------------GIILLDEATSALDTSNERAIQASLAKVC  237 (306)
T ss_dssp             -----------------SEEEEECCSSCCCHHHHHHHHHHHHHHH
T ss_pred             -----------------CEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence                             1244677778888888888888887764

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=98.89  E-value=1.9e-10  Score=101.20  Aligned_cols=151  Identities=15%  Similarity=0.223  Sum_probs=92.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+ +.++|+||||||||||+|+|++.+.+  +.+.+++.++....  ...+.+          .+.++.......
T Consensus        18 isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i----------~~v~q~~~l~~~   84 (240)
T 2onk_A           18 VDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGI----------GFVPQDYALFPH   84 (240)
T ss_dssp             EEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCC----------BCCCSSCCCCTT
T ss_pred             eEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcE----------EEEcCCCccCCC
Confidence            5677889 99999999999999999999998765  45666765553210  000000          111111111111


Q ss_pred             -hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         92 -ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        92 -~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                       ...+.+. +....    ...+...+|+..+++.+++..+ .+....||||++|+++...++..-.              
T Consensus        85 ltv~enl~-~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p--------------  145 (240)
T 2onk_A           85 LSVYRNIA-YGLRN----VERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQP--------------  145 (240)
T ss_dssp             SCHHHHHH-TTCTT----SCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCC--------------
T ss_pred             CcHHHHHH-HHHHH----cCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCC--------------
Confidence             1222221 11100    0112225667788888888554 4556789999999988766543311              


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                             ..+..+|+....++.+.+.+.+.|++.
T Consensus       146 -------~lllLDEPts~LD~~~~~~~~~~l~~l  172 (240)
T 2onk_A          146 -------RLLLLDEPLSAVDLKTKGVLMEELRFV  172 (240)
T ss_dssp             -------SSBEEESTTSSCCHHHHHHHHHHHHHH
T ss_pred             -------CEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence                   135567788888888999998888776

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.87  E-value=2.6e-10  Score=100.21  Aligned_cols=157  Identities=16%  Similarity=0.165  Sum_probs=93.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.++|.||||||||||+|+|++.+.+  +.+.+++.++...    ...   ....  ....+.++.......
T Consensus        25 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----~~~---~~~~--~~i~~v~q~~~l~~~   95 (240)
T 1ji0_A           25 IDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNK----PAH---VINR--MGIALVPEGRRIFPE   95 (240)
T ss_dssp             EEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTC----CHH---HHHH--TTEEEECSSCCCCTT
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC----CHH---HHHh--CCEEEEecCCccCCC
Confidence            4677899999999999999999999999998765  4566676655321    111   1100  001122221111111


Q ss_pred             -hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCC-HHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 -ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVD-LNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        92 -~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~-l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                       ...+.+.. ..  .. ........+++..+++.++ +..+ .+....||||++|+++...++..-.             
T Consensus        96 ltv~enl~~-~~--~~-~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p-------------  158 (240)
T 1ji0_A           96 LTVYENLMM-GA--YN-RKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRP-------------  158 (240)
T ss_dssp             SBHHHHHHG-GG--TT-CCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCC-------------
T ss_pred             CcHHHHHHH-hh--hc-CCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCC-------------
Confidence             22222221 10  00 0111233456667777774 7554 4556789999999998766543211             


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                              ..+..+|+....++.+.+.+.+.|++.+
T Consensus       159 --------~lllLDEPts~LD~~~~~~l~~~l~~~~  186 (240)
T 1ji0_A          159 --------KLLMMDEPSLGLAPILVSEVFEVIQKIN  186 (240)
T ss_dssp             --------SEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred             --------CEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence                    1355677778888888888888887763

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.86  E-value=1.9e-10  Score=103.02  Aligned_cols=155  Identities=13%  Similarity=0.145  Sum_probs=87.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.++|+||||||||||+|+|++.+.+  +.+.+++.++...    ....++      +...+.++.......
T Consensus        38 vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~----~~~~~~------~~i~~v~Q~~~l~~~  107 (271)
T 2ixe_A           38 LTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQY----DHHYLH------TQVAAVGQEPLLFGR  107 (271)
T ss_dssp             EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGB----CHHHHH------HHEEEECSSCCCCSS
T ss_pred             eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccC----CHHHHh------ccEEEEecCCccccc
Confidence            5678899999999999999999999999998764  5566777665321    111111      111222222111112


Q ss_pred             hhhHHHhhcCccchhhcCCCccH-H-----HHHhhhcccC--CHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGV-K-----RELQELVQDV--DLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEI  162 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~-~-----~R~~~l~~~v--~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~  162 (299)
                      ...+.+......     ...... .     .++..+++.+  ++.. +.+....||||++|+++...++..-.       
T Consensus       108 tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p-------  175 (271)
T 2ixe_A          108 SFRENIAYGLTR-----TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKP-------  175 (271)
T ss_dssp             BHHHHHHTTCSS-----CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCC-------
T ss_pred             cHHHHHhhhccc-----CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCC-------
Confidence            222333211000     000010 0     0111223333  2322 23556789999999998765543211       


Q ss_pred             HHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        163 RREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                    ..+..+|+....++.+...+.+.|++..
T Consensus       176 --------------~lllLDEPts~LD~~~~~~i~~~l~~~~  203 (271)
T 2ixe_A          176 --------------RLLILDNATSALDAGNQLRVQRLLYESP  203 (271)
T ss_dssp             --------------SEEEEESTTTTCCHHHHHHHHHHHHHCT
T ss_pred             --------------CEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence                          1245677778888888888988888874

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=98.86  E-value=1.5e-10  Score=107.11  Aligned_cols=151  Identities=15%  Similarity=0.233  Sum_probs=92.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.+.|.||||||||||+|+|++...+  +.+.+++.++...    ..  .+      +...+.++....-+.
T Consensus        19 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~----~~--~~------r~ig~v~Q~~~l~~~   86 (348)
T 3d31_A           19 LSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDL----SP--EK------HDIAFVYQNYSLFPH   86 (348)
T ss_dssp             EEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTS----CH--HH------HTCEEECTTCCCCTT
T ss_pred             eEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCC----ch--hh------CcEEEEecCcccCCC
Confidence            5678899999999999999999999999998765  5566777665321    00  00      000111111111111


Q ss_pred             -hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         92 -ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        92 -~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                       ...+.+.- .  +.  ....+.. +|+..+++.+++..+. ++...||||++|+++...++..-               
T Consensus        87 ltv~enl~~-~--~~--~~~~~~~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~---------------  145 (348)
T 3d31_A           87 MNVKKNLEF-G--MR--MKKIKDP-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTN---------------  145 (348)
T ss_dssp             SCHHHHHHH-H--HH--HHCCCCH-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSC---------------
T ss_pred             CCHHHHHHH-H--HH--HcCCCHH-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcC---------------
Confidence             11122111 0  00  0111222 7778888888886554 55678999999998876544321               


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                         +   ..+..+|+....++.+.+.+.+.|++.
T Consensus       146 ---P---~lLLLDEP~s~LD~~~~~~l~~~l~~l  173 (348)
T 3d31_A          146 ---P---KILLLDEPLSALDPRTQENAREMLSVL  173 (348)
T ss_dssp             ---C---SEEEEESSSTTSCHHHHHHHHHHHHHH
T ss_pred             ---C---CEEEEECccccCCHHHHHHHHHHHHHH
Confidence               1   124466777777888888888877766

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.86  E-value=1.5e-10  Score=104.04  Aligned_cols=160  Identities=13%  Similarity=0.128  Sum_probs=89.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~   89 (299)
                      ++|.+.+++.++|+||||||||||+|+|++.+.+  +.+.+++.++...  ......++.      ...+.++...  ..
T Consensus        40 isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~--~~~~~~~~~------~i~~v~Q~~~~~~~  111 (279)
T 2ihy_A           40 ISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKV--GYSAETVRQ------HIGFVSHSLLEKFQ  111 (279)
T ss_dssp             EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC-----CCHHHHHT------TEEEECHHHHTTSC
T ss_pred             eeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccc--cCCHHHHcC------cEEEEEcCcccccC
Confidence            5677899999999999999999999999998765  4566666554300  001111110      0011111100  01


Q ss_pred             c-hhhhHHHhhcCccchhhcCC--CccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 P-SALRETIVEVPNITWEDIGG--LEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRE  165 (299)
Q Consensus        90 ~-~~~~~~l~~l~~~l~~~~~r--~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~  165 (299)
                      . ....+.+.. .......+..  .....+++..+++.+++..+ .+....||||++|+++...++..-.          
T Consensus       112 ~~ltv~enl~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p----------  180 (279)
T 2ihy_A          112 EGERVIDVVIS-GAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQP----------  180 (279)
T ss_dssp             TTSBHHHHHHT-TC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCC----------
T ss_pred             CCCCHHHHHHh-hhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCC----------
Confidence            0 122222211 1000000001  12234567778888888654 4556789999999998766554311          


Q ss_pred             HHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        166 REKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                 ..+..+|+....++.+.+.+.+.|++.
T Consensus       181 -----------~lLlLDEPts~LD~~~~~~l~~~l~~l  207 (279)
T 2ihy_A          181 -----------QVLILDEPAAGLDFIARESLLSILDSL  207 (279)
T ss_dssp             -----------SEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             -----------CEEEEeCCccccCHHHHHHHHHHHHHH
Confidence                       124566777777777877777776554

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.84  E-value=4.6e-10  Score=105.37  Aligned_cols=120  Identities=16%  Similarity=0.197  Sum_probs=72.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCchh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSA   92 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~~   92 (299)
                      ++|.+.+++.+.|.||||||||||+|+|++... .+.+.+++.++....    ...++      +...+.++....-...
T Consensus        40 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~----~~~~r------r~ig~v~Q~~~lf~~t  109 (390)
T 3gd7_A           40 ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSIT----LEQWR------KAFGVIPQKVFIFSGT  109 (390)
T ss_dssp             EEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSC----HHHHH------HTEEEESCCCCCCSEE
T ss_pred             eeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCC----hHHHh------CCEEEEcCCcccCccC
Confidence            567789999999999999999999999999664 355777777664321    11111      0001111111111111


Q ss_pred             hhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHH-hcCC-----------CCHHHHHHHHHHHHHHH
Q psy13773         93 LRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAK-VTNG-----------FSGADLTEICQRACKLA  153 (299)
Q Consensus        93 ~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~-~t~g-----------lSggDl~~Lv~~A~~~a  153 (299)
                      ..+.+..         . .....+++..+++.+++..+.. ...+           ||||+.|+++...++..
T Consensus       110 v~enl~~---------~-~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~  172 (390)
T 3gd7_A          110 FRKNLDP---------N-AAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS  172 (390)
T ss_dssp             HHHHHCT---------T-CCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHhhh---------c-cccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence            2222210         0 1122456667778888866554 4455           99999999988765543

>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B

Probab=98.84  E-value=8.1e-10  Score=80.83  Aligned_cols=64  Identities=23%  Similarity=0.252  Sum_probs=48.0

Q ss_pred             hcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHH
Q psy13773        121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAM  200 (299)
Q Consensus       121 l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL  200 (299)
                      +..++|+..||.+|+||||+||.++|++|++.|+++..                              ..|+.+||..|+
T Consensus        16 ~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~------------------------------~~i~~~df~~Al   65 (82)
T 2dzn_B           16 LAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR------------------------------YVILQSDLEEAY   65 (82)
T ss_dssp             ECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTC------------------------------SEECHHHHHHHH
T ss_pred             CCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc------------------------------CCcCHHHHHHHH
Confidence            44688999999999999999999999999999988631                              369999999999


Q ss_pred             Hhc-cCCCCHHHHHH
Q psy13773        201 RFA-RRSVNDADIRK  214 (299)
Q Consensus       201 ~~~-~PsVsw~DIgg  214 (299)
                      +++ +|+++.+++.-
T Consensus        66 ~~v~~~~~~~~~~~~   80 (82)
T 2dzn_B           66 ATQVKTDNTVDKFDF   80 (82)
T ss_dssp             HTTCC----------
T ss_pred             HHHHcCcCChHHHHh
Confidence            998 57777666543

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.84  E-value=3.6e-10  Score=100.34  Aligned_cols=154  Identities=12%  Similarity=0.136  Sum_probs=92.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.++|.||||||||||+|+|++.+.+  +.+.+++.++...     ...++      +...+.++.......
T Consensus        34 vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~-----~~~~~------~~i~~v~q~~~l~~~  102 (256)
T 1vpl_A           34 ISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-----PHEVR------KLISYLPEEAGAYRN  102 (256)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-----HHHHH------TTEEEECTTCCCCTT
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcc-----HHHHh------hcEEEEcCCCCCCCC
Confidence            4678899999999999999999999999998765  4566666554321     01110      011122222111111


Q ss_pred             -hhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 -ALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        92 -~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                       ...+.+... ..    ....+  +..+++..+++.+++..+ .+....||||++|+++...++..-             
T Consensus       103 ltv~enl~~~-~~----~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~-------------  164 (256)
T 1vpl_A          103 MQGIEYLRFV-AG----FYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVN-------------  164 (256)
T ss_dssp             SBHHHHHHHH-HH----HHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTC-------------
T ss_pred             CcHHHHHHHH-HH----HcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcC-------------
Confidence             222222110 00    01111  224566677788888554 455678999999998876544321             


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                           +   ..+..+|+....++.+.+.+.+.|++.+
T Consensus       165 -----p---~lllLDEPts~LD~~~~~~l~~~l~~l~  193 (256)
T 1vpl_A          165 -----P---RLAILDEPTSGLDVLNAREVRKILKQAS  193 (256)
T ss_dssp             -----C---SEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred             -----C---CEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence                 1   1345677777888888888888877653

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=98.82  E-value=1.9e-10  Score=101.16  Aligned_cols=55  Identities=15%  Similarity=0.120  Sum_probs=45.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773        205 RSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       205 PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      |.++|+||+|++++|+.+.+.+.|   +++|+.|.. |.....++|||||||||||+|.
T Consensus         1 ~~~~~~~i~G~~~~~~~l~~~~~~---~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la   56 (262)
T 2qz4_A            1 MGVSFKDVAGMHEAKLEVREFVDY---LKSPERFLQLGAKVPKGALLLGPPGCGKTLLA   56 (262)
T ss_dssp             CCCCTTSSCSCHHHHHHHHHHHHH---HHCCC------CCCCCEEEEESCTTSSHHHHH
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHHH---HHCHHHHHHcCCCCCceEEEECCCCCCHHHHH
Confidence            569999999999999999999988   899998854 5566789999999999999874

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=98.82  E-value=6.6e-10  Score=97.76  Aligned_cols=152  Identities=13%  Similarity=0.168  Sum_probs=85.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.++|+||||||||||+++|++...+  +.+.+++.++.........+.+          .+.++....-..
T Consensus        21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i----------~~v~q~~~l~~~   90 (243)
T 1mv5_A           21 ISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQI----------GFVSQDSAIMAG   90 (243)
T ss_dssp             EEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTC----------CEECCSSCCCCE
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhE----------EEEcCCCccccc
Confidence            5678899999999999999999999999998754  5677777665321110000001          111111111111


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH------------HHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI------------AKVTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L------------A~~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      ...+.+.- .  .     ......+++..+++.+++..+            ......||||+.|+++...++..-.    
T Consensus        91 tv~enl~~-~--~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p----  158 (243)
T 1mv5_A           91 TIRENLTY-G--L-----EGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP----  158 (243)
T ss_dssp             EHHHHTTS-C--T-----TSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC----
T ss_pred             cHHHHHhh-h--c-----cCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCC----
Confidence            12222210 0  0     000112233333333333222            1234689999999998776554311    


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                       .-+..+|+....++.+.+.+.+.|++.+
T Consensus       159 -----------------~lllLDEPts~LD~~~~~~i~~~l~~~~  186 (243)
T 1mv5_A          159 -----------------KILMLDEATASLDSESESMVQKALDSLM  186 (243)
T ss_dssp             -----------------SEEEEECCSCSSCSSSCCHHHHHHHHHH
T ss_pred             -----------------CEEEEECCcccCCHHHHHHHHHHHHHhc
Confidence                             1245677778888888888888887764

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.82  E-value=1.3e-09  Score=96.95  Aligned_cols=150  Identities=14%  Similarity=0.165  Sum_probs=85.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCchh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSA   92 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~~   92 (299)
                      ++|.+.+++.++|+||||||||||+|+|++.+. .+.+.+++.++...    ....++      +...+.++....-...
T Consensus        39 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~----~~~~~~------~~i~~v~Q~~~l~~~t  108 (260)
T 2ghi_A           39 INFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKY----NRNSIR------SIIGIVPQDTILFNET  108 (260)
T ss_dssp             EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGB----CHHHHH------TTEEEECSSCCCCSEE
T ss_pred             eEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhc----CHHHHh------ccEEEEcCCCcccccC
Confidence            567889999999999999999999999999764 35566776655321    111111      0001122111111112


Q ss_pred             hhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH------------HhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         93 LRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA------------KVTNGFSGADLTEICQRACKLAIRQSIET  160 (299)
Q Consensus        93 ~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA------------~~t~glSggDl~~Lv~~A~~~a~~r~~~~  160 (299)
                      ..+.+. +..      .. .. .+++..+++.+++....            ++...||||++|+++...++..-.+    
T Consensus       109 v~enl~-~~~------~~-~~-~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~----  175 (260)
T 2ghi_A          109 IKYNIL-YGK------LD-AT-DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPK----  175 (260)
T ss_dssp             HHHHHH-TTC------TT-CC-HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCS----
T ss_pred             HHHHHh-ccC------CC-CC-HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCC----
Confidence            222221 110      00 11 23333444444543332            2346799999999988765543111    


Q ss_pred             HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                       .+..+|+....++.+.+.|.+.|++.
T Consensus       176 -----------------lllLDEPts~LD~~~~~~i~~~l~~l  201 (260)
T 2ghi_A          176 -----------------IVIFDEATSSLDSKTEYLFQKAVEDL  201 (260)
T ss_dssp             -----------------EEEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             -----------------EEEEECccccCCHHHHHHHHHHHHHh
Confidence                             24466777777888888888777665

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=98.82  E-value=4e-10  Score=97.41  Aligned_cols=149  Identities=17%  Similarity=0.161  Sum_probs=88.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.++|+||||||||||+|+|++.+.+  +.+.+++.++. .        .+      ....+.++...... 
T Consensus        28 vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-~--------~~------~~i~~v~q~~~~~~~   92 (214)
T 1sgw_A           28 ITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-K--------VK------GKIFFLPEEIIVPRK   92 (214)
T ss_dssp             EEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-G--------GG------GGEEEECSSCCCCTT
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-h--------hc------CcEEEEeCCCcCCCC
Confidence            4677899999999999999999999999998765  45566655432 0        00      00011111111111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLA  170 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~  170 (299)
                      ....+.+... ....   ....+ .+++..+++.+++..+.+....||+|++|+++...++..-                
T Consensus        93 ~tv~enl~~~-~~~~---~~~~~-~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~----------------  151 (214)
T 1sgw_A           93 ISVEDYLKAV-ASLY---GVKVN-KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVN----------------  151 (214)
T ss_dssp             SBHHHHHHHH-HHHT---TCCCC-HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSC----------------
T ss_pred             CCHHHHHHHH-HHhc---CCchH-HHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhC----------------
Confidence            1122222110 0000   00112 5566677777777444444578999999999876544321                


Q ss_pred             CCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        171 GNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                        +   ..+..+|+....++.+.+.+.+.|++.
T Consensus       152 --p---~lllLDEPts~LD~~~~~~l~~~l~~~  179 (214)
T 1sgw_A          152 --A---EIYVLDDPVVAIDEDSKHKVLKSILEI  179 (214)
T ss_dssp             --C---SEEEEESTTTTSCTTTHHHHHHHHHHH
T ss_pred             --C---CEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence              1   135567788888888888888887655

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.81  E-value=6.5e-10  Score=99.14  Aligned_cols=152  Identities=9%  Similarity=0.041  Sum_probs=91.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KSS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~~   89 (299)
                      ++|.+.+++.++|+||||||||||+|+|++.+.+  +.+.+++.++..       .   .+ .  +...+.++..  ...
T Consensus        26 vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~-------~---~~-~--~~i~~v~q~~~~~~~   92 (266)
T 2yz2_A           26 VSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG-------Y---EI-R--RNIGIAFQYPEDQFF   92 (266)
T ss_dssp             EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCH-------H---HH-G--GGEEEECSSGGGGCC
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECch-------H---Hh-h--hhEEEEeccchhhcC
Confidence            5678899999999999999999999999998765  456666554321       0   00 0  0001111110  011


Q ss_pred             chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH--HHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN--YIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRRER  166 (299)
Q Consensus        90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~--~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~  166 (299)
                      .....+.+.......    .......+|+..+++.+++.  .+. +....||||++|+++...++..-.           
T Consensus        93 ~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p-----------  157 (266)
T 2yz2_A           93 AERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEP-----------  157 (266)
T ss_dssp             CSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCC-----------
T ss_pred             CCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCC-----------
Confidence            112222222111000    01123356777788888886  554 555789999999988766543311           


Q ss_pred             HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                .-+..+|+....++.+.+.+.+.|++.
T Consensus       158 ----------~lllLDEPts~LD~~~~~~l~~~l~~l  184 (266)
T 2yz2_A          158 ----------DILILDEPLVGLDREGKTDLLRIVEKW  184 (266)
T ss_dssp             ----------SEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             ----------CEEEEcCccccCCHHHHHHHHHHHHHH
Confidence                      124466777788888888888877665

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.81  E-value=7.8e-10  Score=98.71  Aligned_cols=161  Identities=16%  Similarity=0.176  Sum_probs=92.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh----cCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l----~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~   89 (299)
                      ++|.+.+++.++|+||||||||||+|+|++..    ..+.+.+++.++...    .....   ..  ....+.++.....
T Consensus        39 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~----~~~~~---~~--~~i~~v~Q~~~l~  109 (267)
T 2zu0_C           39 LSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLAL----SPEDR---AG--EGIFMAFQYPVEI  109 (267)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGS----CHHHH---HH--HTEEEECSSCCCC
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcC----CHHHH---hh--CCEEEEccCcccc
Confidence            46778999999999999999999999999973    246677777665422    11110   00  0001111111111


Q ss_pred             ch-hhhHHHhhcCccch--hhcCCC--ccHHHHHhhhcccCCHH-HHHHhc-C-CCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 PS-ALRETIVEVPNITW--EDIGGL--EGVKRELQELVQDVDLN-YIAKVT-N-GFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        90 ~~-~~~~~l~~l~~~l~--~~~~r~--p~~~~R~~~l~~~v~l~-~LA~~t-~-glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      .. ...+.+......+.  ......  .+..+++..+++.+++. .+..+. . .||||++|+++...++..-.      
T Consensus       110 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p------  183 (267)
T 2zu0_C          110 PGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEP------  183 (267)
T ss_dssp             TTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCC------
T ss_pred             ccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCC------
Confidence            11 11121111000000  000011  12245677778888884 454444 4 49999999998776554311      


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                     ..+..+|+....++.+.+.+.+.|++.+
T Consensus       184 ---------------~lLlLDEPts~LD~~~~~~l~~~l~~l~  211 (267)
T 2zu0_C          184 ---------------ELCILDESDSGLDIDALKVVADGVNSLR  211 (267)
T ss_dssp             ---------------SEEEEESTTTTCCHHHHHHHHHHHHTTC
T ss_pred             ---------------CEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence                           1355777888888888999999888764

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.80  E-value=4.2e-10  Score=99.49  Aligned_cols=161  Identities=13%  Similarity=0.119  Sum_probs=86.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHh--hc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANE--CQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS   89 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~--l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~   89 (299)
                      ++|.+.+++.++|.||||||||||+|+|++.  ..  .+.+.+++.++...    .....   ..  ....+.++.....
T Consensus        22 vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~----~~~~~---~~--~~i~~v~q~~~~~   92 (250)
T 2d2e_A           22 VNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILEL----SPDER---AR--KGLFLAFQYPVEV   92 (250)
T ss_dssp             EEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTS----CHHHH---HH--TTBCCCCCCCC-C
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCC----CHHHH---Hh--CcEEEeccCCccc
Confidence            5678899999999999999999999999996  33  46677777665321    11110   00  0001111111111


Q ss_pred             c-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-HHHHHh-cCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         90 P-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-NYIAKV-TNG-FSGADLTEICQRACKLAIRQSIETEIRRE  165 (299)
Q Consensus        90 ~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-~~LA~~-t~g-lSggDl~~Lv~~A~~~a~~r~~~~~~~~~  165 (299)
                      . ....+.+...............+..+++..+++.+++ ..+..+ ... ||||++|+++...++..-.          
T Consensus        93 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p----------  162 (250)
T 2d2e_A           93 PGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEP----------  162 (250)
T ss_dssp             CSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCC----------
T ss_pred             cCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCC----------
Confidence            1 1112222110000000000011234566677777787 455444 455 9999999998776554311          


Q ss_pred             HHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        166 REKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                 ..+..+|+....++.+.+.+.+.|++.+
T Consensus       163 -----------~lllLDEPts~LD~~~~~~l~~~l~~l~  190 (250)
T 2d2e_A          163 -----------TYAVLDETDSGLDIDALKVVARGVNAMR  190 (250)
T ss_dssp             -----------SEEEEECGGGTTCHHHHHHHHHHHHHHC
T ss_pred             -----------CEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence                       1244667777777788888888777663

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=98.78  E-value=9e-11  Score=104.80  Aligned_cols=57  Identities=21%  Similarity=0.203  Sum_probs=51.1

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773        204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .|+++|+||+|++++++.+.+.+.+  |+++|++|.. +.....++|||||||||||+|.
T Consensus        11 ~~~~~~~~i~G~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la   68 (285)
T 3h4m_A           11 RPNVRYEDIGGLEKQMQEIREVVEL--PLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA   68 (285)
T ss_dssp             SCCCCGGGSCSCHHHHHHHHHHTHH--HHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred             CCCCCHHHhcCHHHHHHHHHHHHHH--HhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence            4789999999999999999999999  9999998765 3466789999999999999875

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.78  E-value=6.5e-10  Score=98.49  Aligned_cols=148  Identities=11%  Similarity=0.046  Sum_probs=87.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC-chh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-PSA   92 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-~~~   92 (299)
                      ++|.+.+++.++|+||||||||||+|+|++.+.+....|....    .+                 .+.++..... ...
T Consensus        24 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~----~i-----------------~~v~q~~~~~~~~t   82 (253)
T 2nq2_C           24 LNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQ----SI-----------------GFVPQFFSSPFAYS   82 (253)
T ss_dssp             EEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECS----CE-----------------EEECSCCCCSSCCB
T ss_pred             EEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEec----cE-----------------EEEcCCCccCCCCC
Confidence            4677899999999999999999999999998876554442000    00                 0001100000 011


Q ss_pred             hhHHHhhcCccchhhcC-C-CccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         93 LRETIVEVPNITWEDIG-G-LEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        93 ~~~~l~~l~~~l~~~~~-r-~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ..+.+... ........ . .....+++..+++.+++..+. +....||||+.|+++...++..-.              
T Consensus        83 v~enl~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p--------------  147 (253)
T 2nq2_C           83 VLDIVLMG-RSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASEC--------------  147 (253)
T ss_dssp             HHHHHHGG-GGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTC--------------
T ss_pred             HHHHHHHh-hhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCC--------------
Confidence            11111110 00000000 0 122345677778888886544 556789999999998776554311              


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                             ..+..+|+....++.+.+.+.+.|++.+
T Consensus       148 -------~lllLDEPts~LD~~~~~~l~~~l~~l~  175 (253)
T 2nq2_C          148 -------KLILLDEPTSALDLANQDIVLSLLIDLA  175 (253)
T ss_dssp             -------SEEEESSSSTTSCHHHHHHHHHHHHHHH
T ss_pred             -------CEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence                   1355677778888888888888887763

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.76  E-value=5.7e-09  Score=102.90  Aligned_cols=152  Identities=11%  Similarity=0.149  Sum_probs=90.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      +++.+++|+.++|+||||||||||+++|++...  .+.+.+++.++...    ....++.      ...+.++....-..
T Consensus       362 i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~----~~~~~~~------~i~~v~Q~~~l~~~  431 (582)
T 3b5x_A          362 VSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDY----KLTNLRR------HFALVSQNVHLFND  431 (582)
T ss_pred             ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhC----CHHHHhc------CeEEEcCCCccccc
Confidence            567789999999999999999999999999775  46677887766432    1111111      00111111111111


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHH------------hcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAK------------VTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~------------~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      +.++.+.- ..       .....++++..+++.+++++...            ....+|||++|+++...++..-.+   
T Consensus       432 tv~eni~~-~~-------~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~---  500 (582)
T 3b5x_A          432 TIANNIAY-AA-------EGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAP---  500 (582)
T ss_pred             cHHHHHhc-cC-------CCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCC---
Confidence            22222211 00       00112344555556666644332            235799999999987665543111   


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                        -+..+|+....++.+.+.+.+++++.+
T Consensus       501 ------------------illlDEpts~LD~~~~~~i~~~l~~~~  527 (582)
T 3b5x_A          501 ------------------VLILDEATSALDTESERAIQAALDELQ  527 (582)
T ss_pred             ------------------EEEEECccccCCHHHHHHHHHHHHHHc
Confidence                              244677888888889999999988874

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.75  E-value=1.1e-09  Score=97.53  Aligned_cols=147  Identities=14%  Similarity=0.131  Sum_probs=89.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCC--eecccchhhhhccccccHHHHHHHHHHHHHHH-HhhhhcCCCc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLTMWFGESEANVRDIFDKVTMEN-FRYAMGKSSP   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~--~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~-~~~~~~~~~~   90 (299)
                      ++|.+. ++.++|.||||||||||+|+|++.+ +.  .+.+++.++...  . ..+.+          . +.++.... .
T Consensus        24 vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~-~~~~i----------~~~v~Q~~~l-~   87 (263)
T 2pjz_A           24 INLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--R-NYIRY----------STNLPEAYEI-G   87 (263)
T ss_dssp             EEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--S-CCTTE----------EECCGGGSCT-T
T ss_pred             eeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--H-Hhhhe----------EEEeCCCCcc-C
Confidence            467889 9999999999999999999999987 64  455666554321  0 00001          1 11221111 1


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-HH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-YI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK  168 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~  168 (299)
                      ....+.+....    . +.  ....+++..+++.+++. .+ .+....||||++|+++...++..-.             
T Consensus        88 ~tv~enl~~~~----~-~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p-------------  147 (263)
T 2pjz_A           88 VTVNDIVYLYE----E-LK--GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQP-------------  147 (263)
T ss_dssp             SBHHHHHHHHH----H-HT--CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCC-------------
T ss_pred             CcHHHHHHHhh----h-hc--chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCC-------------
Confidence            11222221100    0 00  11245566677777775 54 4556789999999998766544311             


Q ss_pred             hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                              .-+..+|+....++.+.+.+.+.|++.+
T Consensus       148 --------~lllLDEPts~LD~~~~~~l~~~L~~~~  175 (263)
T 2pjz_A          148 --------EIVGLDEPFENVDAARRHVISRYIKEYG  175 (263)
T ss_dssp             --------SEEEEECTTTTCCHHHHHHHHHHHHHSC
T ss_pred             --------CEEEEECCccccCHHHHHHHHHHHHHhc
Confidence                    1245677778888888888888888764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.73  E-value=5.9e-09  Score=102.81  Aligned_cols=151  Identities=13%  Similarity=0.125  Sum_probs=91.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      +++.+++|+.++|+||||||||||+++|++...+  +.+.+++.++...    ....++.      ...+.++....-..
T Consensus       362 v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~----~~~~~~~------~i~~v~Q~~~l~~~  431 (582)
T 3b60_A          362 INLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREY----TLASLRN------QVALVSQNVHLFND  431 (582)
T ss_dssp             EEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTB----CHHHHHH------TEEEECSSCCCCSS
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEcccc----CHHHHHh------hCeEEccCCcCCCC
Confidence            5677899999999999999999999999998765  5577787766432    1111111      01122221111112


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHHh------------cCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKV------------TNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~------------t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      +.++.+.-..        .....++++..+++.+++.+...+            ...+|||+.|+++...++..-.    
T Consensus       432 tv~eni~~~~--------~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p----  499 (582)
T 3b60_A          432 TVANNIAYAR--------TEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDS----  499 (582)
T ss_dssp             BHHHHHHTTT--------TSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCC----
T ss_pred             CHHHHHhccC--------CCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC----
Confidence            2233322100        001123456666677777554332            2579999999998766554311    


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                                       .-+..+|+....++.+.+.+.+++++.
T Consensus       500 -----------------~illlDEpts~LD~~~~~~i~~~l~~~  526 (582)
T 3b60_A          500 -----------------PILILDEATSALDTESERAIQAALDEL  526 (582)
T ss_dssp             -----------------SEEEEETTTSSCCHHHHHHHHHHHHHH
T ss_pred             -----------------CEEEEECccccCCHHHHHHHHHHHHHH
Confidence                             124567788888888888888888765

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=98.69  E-value=8.2e-10  Score=103.48  Aligned_cols=56  Identities=18%  Similarity=0.089  Sum_probs=51.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        205 RSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       205 PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      +.++|+||.|.+.+++.+.+.+.+  |+.||++|...-....++|||||||||||+|.
T Consensus       110 ~~~~~~~iiG~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la  165 (389)
T 3vfd_A          110 TAVKFDDIAGQDLAKQALQEIVIL--PSLRPELFTGLRAPARGLLLFGPPGNGKTMLA  165 (389)
T ss_dssp             CCCCGGGSCSCHHHHHHHHHHTHH--HHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred             CCCChHHhCCHHHHHHHHHHHHHH--hccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence            559999999999999999999999  99999999876666789999999999999874

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.68  E-value=8.2e-09  Score=102.12  Aligned_cols=151  Identities=16%  Similarity=0.204  Sum_probs=89.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      +++.+++++.++|+||+|||||||+++|++...+  +.+.+++.++...    ....++.      ...+.++....-..
T Consensus       374 isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~----~~~~~r~------~i~~v~Q~~~lf~~  443 (598)
T 3qf4_B          374 ITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKI----KRSSLRS------SIGIVLQDTILFST  443 (598)
T ss_dssp             EEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGS----CHHHHHH------HEEEECTTCCCCSS
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhC----CHHHHHh------ceEEEeCCCccccc
Confidence            5677899999999999999999999999998765  5577788777543    1111211      11222222111112


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-H-----------HhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-A-----------KVTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A-----------~~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      +.++.+.-         ......+++....++.+++++. .           +....+|||+.|+++...++..-.    
T Consensus       444 tv~eni~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p----  510 (598)
T 3qf4_B          444 TVKENLKY---------GNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANP----  510 (598)
T ss_dssp             BHHHHHHS---------SSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCC----
T ss_pred             cHHHHHhc---------CCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCC----
Confidence            22222211         0000111223344444444332 2           223579999999998766544311    


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                       .-+..+|+....++.+...+.+++++.+
T Consensus       511 -----------------~illlDEpts~LD~~~~~~i~~~l~~~~  538 (598)
T 3qf4_B          511 -----------------KILILDEATSNVDTKTEKSIQAAMWKLM  538 (598)
T ss_dssp             -----------------SEEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred             -----------------CEEEEECCccCCCHHHHHHHHHHHHHHc
Confidence                             1244677888888888889988888764

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.67  E-value=6.3e-09  Score=102.50  Aligned_cols=151  Identities=15%  Similarity=0.184  Sum_probs=88.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+++++.++|+||||||||||+++|++...+  +.+.+++.++...    ....++.      ...+.++....-..
T Consensus       360 isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~----~~~~~r~------~i~~v~Q~~~l~~~  429 (578)
T 4a82_A          360 INLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDF----LTGSLRN------QIGLVQQDNILFSD  429 (578)
T ss_dssp             EEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGS----CHHHHHH------TEEEECSSCCCCSS
T ss_pred             eEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhC----CHHHHhh------heEEEeCCCccCcc
Confidence            4677899999999999999999999999998765  5677788776542    1111111      01222221111112


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HH-----------HhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IA-----------KVTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA-----------~~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      +.++.+.-         .+.....++....++..++.+ +.           ++...+|||+.|+++...++..-.    
T Consensus       430 tv~eni~~---------~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p----  496 (578)
T 4a82_A          430 TVKENILL---------GRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNP----  496 (578)
T ss_dssp             BHHHHHGG---------GCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCC----
T ss_pred             cHHHHHhc---------CCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCC----
Confidence            22222211         011111233333344444422 22           223579999999998776554311    


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                       .-+..+|+....++.+.+.+.+++++.+
T Consensus       497 -----------------~illlDEpts~LD~~~~~~i~~~l~~~~  524 (578)
T 4a82_A          497 -----------------PILILDEATSALDLESESIIQEALDVLS  524 (578)
T ss_dssp             -----------------SEEEEESTTTTCCHHHHHHHHHHHHHHT
T ss_pred             -----------------CEEEEECccccCCHHHHHHHHHHHHHHc
Confidence                             1244677778888888888888887664

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=98.60  E-value=1.8e-09  Score=95.07  Aligned_cols=56  Identities=18%  Similarity=0.168  Sum_probs=45.8

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773        204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .|.++|+||+|++.+|+.+.+.+.|   +++|+.|.. +.+-..|+|+|||||||||+|.
T Consensus         6 ~~~~~~~~i~G~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la   62 (257)
T 1lv7_A            6 QIKTTFADVAGCDEAKEEVAELVEY---LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA   62 (257)
T ss_dssp             SSCCCGGGSCSCHHHHHHTHHHHHH---HHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred             CCCCCHHHhcCcHHHHHHHHHHHHH---HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence            3669999999999999999999987   889987764 3344568999999999999874

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=98.60  E-value=7.2e-10  Score=107.12  Aligned_cols=56  Identities=16%  Similarity=0.123  Sum_probs=50.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC-CCCCCcccccCCCCCCCeeee
Q psy13773        205 RSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQS-QSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       205 PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~-~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      +.++|+||+|++..++.+.+.+.+  |++||++|... .....|+|||||||||||+|.
T Consensus       199 ~~~~~~~i~G~~~~~~~l~~~i~~--~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lA  255 (489)
T 3hu3_A          199 NEVGYDDIGGCRKQLAQIKEMVEL--PLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA  255 (489)
T ss_dssp             TCCCGGGCCSCHHHHHHHHHHTHH--HHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred             CCCCHHHcCCHHHHHHHHHHHHHH--HhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence            569999999999999999999999  99999988754 556679999999999999875

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.60  E-value=1.4e-08  Score=100.31  Aligned_cols=151  Identities=16%  Similarity=0.201  Sum_probs=88.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+++++.++|+||+|||||||+++|++...+  +.+.+++.++...    ....++.      ...+.++....-..
T Consensus       362 isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~----~~~~~r~------~i~~v~Q~~~lf~~  431 (587)
T 3qf4_A          362 VNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV----KLKDLRG------HISAVPQETVLFSG  431 (587)
T ss_dssp             EEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGB----CHHHHHH------HEEEECSSCCCCSE
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccC----CHHHHHh------heEEECCCCcCcCc
Confidence            4677899999999999999999999999998765  5677888877543    1111211      11222222111112


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-H-----------HHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-I-----------AKVTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-L-----------A~~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      +.++.+.-         .+.....++....++..++.+ +           .++...+||||.|+++...++..-.    
T Consensus       432 tv~eni~~---------~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p----  498 (587)
T 3qf4_A          432 TIKENLKW---------GREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKP----  498 (587)
T ss_dssp             EHHHHHTT---------TCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCC----
T ss_pred             cHHHHHhc---------cCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCC----
Confidence            22222211         000011122222222222211 1           2344679999999998766544311    


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                       .-+..+|+....++.+.+.+.+++++.+
T Consensus       499 -----------------~illlDEpts~LD~~~~~~i~~~l~~~~  526 (587)
T 3qf4_A          499 -----------------KVLILDDCTSSVDPITEKRILDGLKRYT  526 (587)
T ss_dssp             -----------------SEEEEESCCTTSCHHHHHHHHHHHHHHS
T ss_pred             -----------------CEEEEECCcccCCHHHHHHHHHHHHHhC
Confidence                             1244677888888889999999988764

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=98.57  E-value=4.8e-08  Score=93.40  Aligned_cols=59  Identities=36%  Similarity=0.530  Sum_probs=53.6

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHH
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKV   76 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a   76 (299)
                      +..++.++||+||||||||++++++|..++  ..++.+++.++.+.+.++++. ++.+|..+
T Consensus        59 ~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a  119 (456)
T 2c9o_A           59 KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRRA  119 (456)
T ss_dssp             TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-HHHHHHHT
T ss_pred             CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-HHHHHHHH
Confidence            455678999999999999999999999998  889999999999999999887 88888876

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=98.56  E-value=1.5e-07  Score=86.72  Aligned_cols=41  Identities=34%  Similarity=0.613  Sum_probs=32.9

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLT   59 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~   59 (299)
                      .++..++|+||||||||+++++++..++.  .++.++|..+..
T Consensus        68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  110 (368)
T 3uk6_A           68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS  110 (368)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence            45679999999999999999999998874  556666655443

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=98.56  E-value=4e-08  Score=93.44  Aligned_cols=74  Identities=23%  Similarity=0.385  Sum_probs=56.8

Q ss_pred             cCcChhhhhcCCCC-CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhh-ccccc-cHHHHHHHHHHHHHH
Q psy13773          6 PVEHPEKFLKFGMQ-PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFGE-SEANVRDIFDKVTME   79 (299)
Q Consensus         6 pl~~p~~~~sl~i~-~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~-~~~g~-~~~~i~~~f~~a~~~   79 (299)
                      |..++.++..+... ++.+++|+|||||||||++++||..++..++.+++..+.. .|+|. .+..++.+|..+...
T Consensus        34 ~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~  110 (444)
T 1g41_A           34 RWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKL  110 (444)
T ss_dssp             HHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHH
T ss_pred             HHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhc
Confidence            33444444444332 4678999999999999999999999999999999998887 58885 788899999887643

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.55  E-value=6.9e-08  Score=108.40  Aligned_cols=41  Identities=24%  Similarity=0.418  Sum_probs=36.5

Q ss_pred             CCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhh
Q psy13773         18 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL   58 (299)
Q Consensus        18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~   58 (299)
                      +....++++.||+|||||++++.+|..++..++.++|++-.
T Consensus       642 l~~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~l  682 (2695)
T 4akg_A          642 LHQKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSF  682 (2695)
T ss_dssp             HHTTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSC
T ss_pred             HHhCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCC
Confidence            34567899999999999999999999999999999997654

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=98.54  E-value=6.3e-10  Score=98.46  Aligned_cols=56  Identities=18%  Similarity=0.227  Sum_probs=48.0

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773        204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .|.++|+||.|.+++++.+.+.+.+   ++||+.|.. +.+...|+|||||||||||+|.
T Consensus         5 ~~~~~~~~i~G~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la   61 (268)
T 2r62_A            5 KPNVRFKDMAGNEEAKEEVVEIVDF---LKYPERYANLGAKIPKGVLLVGPPGTGKTLLA   61 (268)
T ss_dssp             CCCCCSTTSSSCTTTHHHHHHHHHH---HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred             CCCCCHHHhCCcHHHHHHHHHHHHH---HHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence            4679999999999999999999887   889987754 4455678999999999999985

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.49  E-value=5.2e-08  Score=96.36  Aligned_cols=164  Identities=13%  Similarity=0.187  Sum_probs=83.5

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchh----hhhccccccHHHHHHHHHHHHHHHHhhhhcCCCchh
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE----LLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSA   92 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~----l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~~   92 (299)
                      .+.+|+.++|+||||+|||||+|+|++.+.+....+....    +...+.+..   +...|.......+...........
T Consensus        99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~  175 (608)
T 3j16_B           99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSE---LQNYFTKMLEDDIKAIIKPQYVDN  175 (608)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTST---HHHHHHHHHHTSCCCEEECCCTTT
T ss_pred             CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChh---hhhhhhHHHHHhhhhhhchhhhhh
Confidence            3568999999999999999999999998876655553211    011111111   112222111100000000000000


Q ss_pred             hhHHHhhcCccchhhc-CCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13773         93 LRETIVEVPNITWEDI-GGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLA  170 (299)
Q Consensus        93 ~~~~l~~l~~~l~~~~-~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~  170 (299)
                      ....+..........+ .......+++..+++.+++..+ .+....||||++|++...+++..-.               
T Consensus       176 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p---------------  240 (608)
T 3j16_B          176 IPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEA---------------  240 (608)
T ss_dssp             HHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCC---------------
T ss_pred             hhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCC---------------
Confidence            0000000000000000 0011223566677777888554 4556899999999998776554311               


Q ss_pred             CCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        171 GNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                            ..+..+|+....++-+...+.+.+++++
T Consensus       241 ------~llllDEPts~LD~~~~~~l~~~l~~l~  268 (608)
T 3j16_B          241 ------DVYMFDEPSSYLDVKQRLNAAQIIRSLL  268 (608)
T ss_dssp             ------SEEEEECTTTTCCHHHHHHHHHHHHGGG
T ss_pred             ------CEEEEECcccCCCHHHHHHHHHHHHHHH
Confidence                  1244566666666677777777777664

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.44  E-value=1.1e-07  Score=101.77  Aligned_cols=151  Identities=13%  Similarity=0.190  Sum_probs=91.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+++|+.++|+||+|||||||++.|.+...+  +.+.+++.++...    ....++.-      ..++++..-.-..
T Consensus       437 isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~----~~~~lr~~------i~~v~Q~~~Lf~~  506 (1321)
T 4f4c_A          437 MNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDI----NLEFLRKN------VAVVSQEPALFNC  506 (1321)
T ss_dssp             EEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTS----CHHHHHHH------EEEECSSCCCCSE
T ss_pred             eEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhc----cHHHHhhc------ccccCCcceeeCC
Confidence            5778899999999999999999999999998875  5577888777543    11222210      1222222222222


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-HHHHHh-----------cCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-NYIAKV-----------TNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-~~LA~~-----------t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      +.++.+.-         .+.....+++...++..++ +.+...           -..+||||.|+++.+.+...-.    
T Consensus       507 TI~eNI~~---------g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~----  573 (1321)
T 4f4c_A          507 TIEENISL---------GKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNP----  573 (1321)
T ss_dssp             EHHHHHHT---------TCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCC----
T ss_pred             chhHHHhh---------hcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCC----
Confidence            22222211         1111123445545544444 233333           2459999999998765443211    


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                       .-+..+|+....+.-+...+.++|++..
T Consensus       574 -----------------~IliLDE~tSaLD~~te~~i~~~l~~~~  601 (1321)
T 4f4c_A          574 -----------------KILLLDEATSALDAESEGIVQQALDKAA  601 (1321)
T ss_dssp             -----------------SEEEEESTTTTSCTTTHHHHHHHHHHHH
T ss_pred             -----------------CEEEEecccccCCHHHHHHHHHHHHHHh
Confidence                             1244667778888889899999998864

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=98.43  E-value=7.2e-09  Score=111.93  Aligned_cols=56  Identities=7%  Similarity=-0.040  Sum_probs=41.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHhhcCCCCCCC----------CCCCCC-------------------CCCCCCcccccCCCCC
Q psy13773        206 SVNDADIRKYEMFAQTLQQSRGFGTNFRF----------PSNPNQ-------------------SQSGGPNSAPANESGT  256 (299)
Q Consensus       206 sVsw~DIggL~~vk~~i~~ti~~~~Plk~----------Pe~~~~-------------------~~~k~s~~l~~g~~gt  256 (299)
                      .|+|+||||++++|++.+++++|  |++|          |+.|..                   |+.|-+.+|+||||||
T Consensus      1016 ~~~~~~~~~~~~~k~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A         1016 GSSTGSMSAIDENKQKALAAALG--QIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp             --------CTTHHHHHHHHHHHH--HHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred             CceeeecCCccHHHHHHHHHHHH--HHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence            39999999999999999999999  9966          888865                   3556667999999999


Q ss_pred             CCeeeec
Q psy13773        257 GGILLMF  263 (299)
Q Consensus       257 g~~ll~~  263 (299)
                      |||||-.
T Consensus      1094 GKT~la~ 1100 (1706)
T 3cmw_A         1094 GKTTLTL 1100 (1706)
T ss_dssp             SHHHHHH
T ss_pred             ChHHHHH
Confidence            9999853

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.43  E-value=7.9e-09  Score=99.35  Aligned_cols=56  Identities=23%  Similarity=0.235  Sum_probs=47.5

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773        204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .+.++|+||+|++++|+++.+.+.+   +++|+.|.. +.+-..|+|||||||||||+|.
T Consensus        10 ~~~~~f~di~G~~~~~~~l~e~v~~---l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La   66 (476)
T 2ce7_A           10 NKRVTFKDVGGAEEAIEELKEVVEF---LKDPSKFNRIGARMPKGILLVGPPGTGKTLLA   66 (476)
T ss_dssp             SCCCCGGGCCSCHHHHHHHHHHHHH---HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred             CCCCCHHHhCCcHHHHHHHHHHHHH---hhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence            3569999999999999999999988   788886643 4455568999999999999984

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.39  E-value=7.9e-08  Score=102.96  Aligned_cols=154  Identities=18%  Similarity=0.266  Sum_probs=92.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+++|+.++|+|++|||||||+++|.+...  .+.|.||+.++...    ....+|..+      .+.++....-..
T Consensus      1098 isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i----~~~~lR~~i------~~V~Qdp~LF~g 1167 (1321)
T 4f4c_A         1098 LSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTL----NPEHTRSQI------AIVSQEPTLFDC 1167 (1321)
T ss_dssp             EEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTB----CHHHHHTTE------EEECSSCCCCSE
T ss_pred             eeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhC----CHHHHHhhe------EEECCCCEeeCc
Confidence            567889999999999999999999999999765  47788999888654    112222110      122222111122


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHH-----------hcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAK-----------VTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~-----------~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      +.++.+.-   .+++    ..-.++++...++..++++ +..           .-..|||||.|++|.+.++..  +   
T Consensus      1168 TIreNI~~---gld~----~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr--~--- 1235 (1321)
T 4f4c_A         1168 SIAENIIY---GLDP----SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVR--N--- 1235 (1321)
T ss_dssp             EHHHHHSS---SSCT----TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHS--C---
T ss_pred             cHHHHHhc---cCCC----CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHh--C---
Confidence            22222210   0111    0011233444444444422 222           224599999999987654432  1   


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P  205 (299)
                                   +   .-+..+|.....+.-|...+.++|++...
T Consensus      1236 -------------~---~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~ 1265 (1321)
T 4f4c_A         1236 -------------P---KILLLDEATSALDTESEKVVQEALDRARE 1265 (1321)
T ss_dssp             -------------C---SEEEEESCCCSTTSHHHHHHHHHHTTTSS
T ss_pred             -------------C---CEEEEeCccccCCHHHHHHHHHHHHHHcC
Confidence                         1   12446778888889999999999988653

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.37  E-value=8e-08  Score=93.79  Aligned_cols=141  Identities=14%  Similarity=0.155  Sum_probs=82.2

Q ss_pred             cCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCC--eecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCchh
Q psy13773         15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSA   92 (299)
Q Consensus        15 sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~--~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~~   92 (299)
                      ++.+.+++.++|+||||||||||+|+|++.+.+.  .+.++...+.-. ....                   . ......
T Consensus       288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~-~q~~-------------------~-~~~~~t  346 (538)
T 3ozx_A          288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYK-PQRI-------------------F-PNYDGT  346 (538)
T ss_dssp             CEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEE-CSSC-------------------C-CCCSSB
T ss_pred             cceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEee-chhc-------------------c-cccCCC
Confidence            3446789999999999999999999999987654  344433222100 0000                   0 000001


Q ss_pred             hhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy13773         93 LRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAG  171 (299)
Q Consensus        93 ~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~  171 (299)
                      ..+.+.....      ........+...+++.+++..++ +....||||++|+++...++..-.                
T Consensus       347 v~~~l~~~~~------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p----------------  404 (538)
T 3ozx_A          347 VQQYLENASK------DALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEA----------------  404 (538)
T ss_dssp             HHHHHHHHCS------STTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCC----------------
T ss_pred             HHHHHHHhhh------hccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCC----------------
Confidence            1111111000      00011223456677778886554 455789999999998776554311                


Q ss_pred             CcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        172 NPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                           ..+..+|+....++.+...+.+.|+++
T Consensus       405 -----~lLlLDEPT~gLD~~~~~~i~~~l~~l  431 (538)
T 3ozx_A          405 -----DLYVLDQPSSYLDVEERYIVAKAIKRV  431 (538)
T ss_dssp             -----SEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             -----CEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence                 124466777777777888888877765

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.36  E-value=1.5e-07  Score=100.50  Aligned_cols=151  Identities=17%  Similarity=0.266  Sum_probs=85.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+++++.++|+||+|||||||+++|++...+  +.+.+++.++...    ....++..      ..+.++....-..
T Consensus       409 isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~----~~~~~r~~------i~~v~Q~~~l~~~  478 (1284)
T 3g5u_A          409 LNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTI----NVRYLREI------IGVVSQEPVLFAT  478 (1284)
T ss_dssp             EEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGS----CHHHHHHH------EEEECSSCCCCSS
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhC----CHHHHHhh------eEEEcCCCccCCc
Confidence            5677899999999999999999999999998765  5677888777543    11122110      1222222211112


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-HHH-----------HhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-YIA-----------KVTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~LA-----------~~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      +.++.+.-         .+.....+++...++..++. .+.           .+...+||||.|+++.+.++..-.+   
T Consensus       479 ti~eNi~~---------g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~---  546 (1284)
T 3g5u_A          479 TIAENIRY---------GREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPK---  546 (1284)
T ss_dssp             CHHHHHHH---------HCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCS---
T ss_pred             cHHHHHhc---------CCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCC---
Confidence            22222211         00000112222222222221 122           2234799999999988765543111   


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                        -+..+|+....++-+.+.+.++++...
T Consensus       547 ------------------iliLDEpts~LD~~~~~~i~~~l~~~~  573 (1284)
T 3g5u_A          547 ------------------ILLLDEATSALDTESEAVVQAALDKAR  573 (1284)
T ss_dssp             ------------------EEEEESTTCSSCHHHHHHHHHHHHHHH
T ss_pred             ------------------EEEEECCCCCCCHHHHHHHHHHHHHHc
Confidence                              244667777777778888888887653

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.35  E-value=2.1e-08  Score=96.92  Aligned_cols=55  Identities=18%  Similarity=0.157  Sum_probs=47.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773        205 RSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       205 PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      |.++|+||.|++++|+++.+.+.+   +++|+.|.. +.+-..|+|||||||||||+|.
T Consensus        26 ~~~~f~dv~G~~~~k~~l~~lv~~---l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa   81 (499)
T 2dhr_A           26 PKVTFKDVAGAEEAKEELKEIVEF---LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA   81 (499)
T ss_dssp             CCCCTTSSCSCHHHHHHHHHHHHH---HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred             CCCCHHHcCCcHHHHHHHHHHHHH---hhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence            679999999999999999999887   788886654 4455668999999999999985

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=98.33  E-value=5.2e-07  Score=81.03  Aligned_cols=58  Identities=24%  Similarity=0.509  Sum_probs=49.3

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcC-------CeecccchhhhhccccccHHHHHHHHHHHH
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQA-------NFISVKGPELLTMWFGESEANVRDIFDKVT   77 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~-------~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~   77 (299)
                      ++..++|+||+|||||++++++|..+..       .++++++.++...+.+.....+..+|..+.
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~  130 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAM  130 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhcC
Confidence            4457999999999999999999998742       788899999998888888888888887653

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.30  E-value=1.1e-08  Score=89.84  Aligned_cols=57  Identities=18%  Similarity=0.130  Sum_probs=44.9

Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC-CCCCCCCCcccccCCCCCCCeeee
Q psy13773        203 ARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNP-NQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       203 ~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~-~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      ..|.++|+||+|+++++.++.+.+.+   +.+|+.| .-++.-..|+++|||||||||+|.
T Consensus         9 ~~~~~~~~~i~g~~~~~~~l~~l~~~---~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~   66 (254)
T 1ixz_A            9 EAPKVTFKDVAGAEEAKEELKEIVEF---LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA   66 (254)
T ss_dssp             CCCSCCGGGCCSCHHHHHHHHHHHHH---HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred             CCCCCCHHHhCCcHHHHHHHHHHHHH---HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence            45789999999999999999988776   5555533 224455567999999999999875

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.30  E-value=1.5e-07  Score=91.94  Aligned_cols=34  Identities=29%  Similarity=0.310  Sum_probs=29.3

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      .+++.++|+||||||||||+|+|++.+.+....+
T Consensus        23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i   56 (538)
T 3ozx_A           23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP   56 (538)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence            4788999999999999999999999887655444

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.27  E-value=2.3e-07  Score=90.57  Aligned_cols=138  Identities=15%  Similarity=0.150  Sum_probs=81.1

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC-CchhhhH
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS-SPSALRE   95 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~-~~~~~~~   95 (299)
                      .+.+++.++|+||||||||||+|+|++...+....|....-+.                     +.++.... ......+
T Consensus       308 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~---------------------~v~Q~~~~~~~~tv~~  366 (538)
T 1yqt_A          308 EIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA---------------------YKPQYIKADYEGTVYE  366 (538)
T ss_dssp             EEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEE---------------------EECSSCCCCCSSBHHH
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEE---------------------EEecCCcCCCCCcHHH
Confidence            3578999999999999999999999998765433332100000                     00000000 0000111


Q ss_pred             HHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q psy13773         96 TIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPA  174 (299)
Q Consensus        96 ~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~  174 (299)
                      .+....   ...    ....+++..+++.+++...+ +....||||++|+++...++..-                    
T Consensus       367 ~~~~~~---~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~--------------------  419 (538)
T 1yqt_A          367 LLSKID---ASK----LNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRD--------------------  419 (538)
T ss_dssp             HHHHHH---HHH----HTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSC--------------------
T ss_pred             HHHhhh---ccC----CCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhC--------------------
Confidence            111000   000    01134556677788885544 45578999999999876544321                    


Q ss_pred             cccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        175 ASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       175 ~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                       ...+..+|+....++-+.+.+.+.|+++
T Consensus       420 -p~lLlLDEPt~~LD~~~~~~i~~~l~~l  447 (538)
T 1yqt_A          420 -ADIYLLDEPSAYLDVEQRLAVSRAIRHL  447 (538)
T ss_dssp             -CSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred             -CCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence             1135577788888888888999988876

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.25  E-value=1e-07  Score=93.16  Aligned_cols=35  Identities=26%  Similarity=0.321  Sum_probs=30.2

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFIS   51 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~   51 (299)
                      .+.+++.++|+||||||||||+|+|++.+.+....
T Consensus        43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~   77 (538)
T 1yqt_A           43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG   77 (538)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence            47899999999999999999999999987654433

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.23  E-value=3e-07  Score=98.19  Aligned_cols=153  Identities=12%  Similarity=0.187  Sum_probs=85.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+|+.+.|+||+|||||||+++|++...+  +.+.+++.++...    ....++.      ...+.++....-..
T Consensus      1052 vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~----~~~~~r~------~i~~v~Q~~~l~~~ 1121 (1284)
T 3g5u_A         1052 LSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQL----NVQWLRA------QLGIVSQEPILFDC 1121 (1284)
T ss_dssp             CCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSS----CHHHHTT------SCEEEESSCCCCSS
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccC----CHHHHHh------ceEEECCCCccccc
Confidence            5677899999999999999999999999997764  5677888777532    1111111      00111111111111


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH------------HHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI------------AKVTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L------------A~~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      ..++.+.- ...     .+..+ .+++...++..++.+.            ......||||++|+++...++..-.    
T Consensus      1122 ti~eNi~~-~~~-----~~~~~-~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p---- 1190 (1284)
T 3g5u_A         1122 SIAENIAY-GDN-----SRVVS-YEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQP---- 1190 (1284)
T ss_dssp             BHHHHHTC-CCS-----SCCCC-HHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCC----
T ss_pred             cHHHHHhc-cCC-----CCCCC-HHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCC----
Confidence            22222210 000     00001 1112222222222211            1223469999999999876554311    


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                       .-+..+|+....++-+.+.+.++|++..
T Consensus      1191 -----------------~iLiLDEpTs~lD~~~~~~i~~~l~~~~ 1218 (1284)
T 3g5u_A         1191 -----------------HILLLDEATSALDTESEKVVQEALDKAR 1218 (1284)
T ss_dssp             -----------------SSEEEESCSSSCCHHHHHHHHHHHHHHS
T ss_pred             -----------------CEEEEeCCcccCCHHHHHHHHHHHHHhC
Confidence                             1245677788888888888998887764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.23  E-value=2.6e-07  Score=91.42  Aligned_cols=35  Identities=29%  Similarity=0.316  Sum_probs=30.2

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFIS   51 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~   51 (299)
                      .+.+++.++|+||||+|||||+|+|++.+.+....
T Consensus       113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~  147 (607)
T 3bk7_A          113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE  147 (607)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred             CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence            46899999999999999999999999987654433

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.22  E-value=2.9e-07  Score=91.07  Aligned_cols=138  Identities=15%  Similarity=0.146  Sum_probs=79.1

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC-CchhhhH
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS-SPSALRE   95 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~-~~~~~~~   95 (299)
                      .+.+++.++|+||||||||||+|+|++.+.+....|....-+.                     +.++.... ......+
T Consensus       378 ~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~---------------------~v~Q~~~~~~~~tv~e  436 (607)
T 3bk7_A          378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA---------------------YKPQYIKAEYEGTVYE  436 (607)
T ss_dssp             EEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEE---------------------EECSSCCCCCSSBHHH
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEE---------------------EEecCccCCCCCcHHH
Confidence            3578999999999999999999999998765443332100000                     00000000 0000111


Q ss_pred             HHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q psy13773         96 TIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPA  174 (299)
Q Consensus        96 ~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~  174 (299)
                      .+....   ...    ....+++..+++.+++..++ +....||||++|+++...++..-                    
T Consensus       437 ~~~~~~---~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~--------------------  489 (607)
T 3bk7_A          437 LLSKID---SSK----LNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRD--------------------  489 (607)
T ss_dssp             HHHHHH---HHH----HHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSC--------------------
T ss_pred             HHHhhh---ccC----CCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhC--------------------
Confidence            110000   000    00123445566666665444 44578999999999876544321                    


Q ss_pred             cccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        175 ASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       175 ~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                       ...+..+|+....++.+...+.+.|+++
T Consensus       490 -p~lLlLDEPt~~LD~~~~~~l~~~l~~l  517 (607)
T 3bk7_A          490 -ADIYLLDEPSAYLDVEQRLAVSRAIRHL  517 (607)
T ss_dssp             -CSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred             -CCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence             1134567777888888888898888876

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=98.21  E-value=7.5e-07  Score=82.34  Aligned_cols=56  Identities=30%  Similarity=0.544  Sum_probs=46.0

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhc-ccccc-HHHHHHHHHH
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM-WFGES-EANVRDIFDK   75 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~-~~g~~-~~~i~~~f~~   75 (299)
                      ++..++|+||||||||+++++||..++..++.++|.++... +.|.. ...++.+|..
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~  107 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK  107 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHH
Confidence            56789999999999999999999999999999999988743 56654 4556666654

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.21  E-value=7.9e-07  Score=74.09  Aligned_cols=41  Identities=27%  Similarity=0.348  Sum_probs=35.0

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL   57 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l   57 (299)
                      .+.+++.++|+|||||||||++++|++.++.+.+.+++.++
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~   45 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL   45 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence            35788999999999999999999999987777777776655

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.16  E-value=9.1e-07  Score=73.30  Aligned_cols=35  Identities=34%  Similarity=0.505  Sum_probs=30.6

Q ss_pred             hhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         12 KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        12 ~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      ...++.+..+..++|+||+|||||||++++++.+.
T Consensus        29 ~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A           29 FVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             HHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             HHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34567778899999999999999999999999773

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.16  E-value=7e-06  Score=70.17  Aligned_cols=38  Identities=16%  Similarity=0.221  Sum_probs=30.3

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhc---CCeecccchhh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPEL   57 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~---~~~i~i~~~~l   57 (299)
                      .+..++|+||+|||||+++++++..+.   ..++++++.++
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~   91 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH   91 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence            577999999999999999999999765   34555655543

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.15  E-value=1.2e-06  Score=71.81  Aligned_cols=45  Identities=22%  Similarity=0.270  Sum_probs=36.7

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-CCeecccchhhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-ANFISVKGPELL   58 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-~~~i~i~~~~l~   58 (299)
                      ++|.+.+++.++|.||+|||||||+|+|++.+. .+.+.+++.++.
T Consensus        26 vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~~~g~~i~   71 (158)
T 1htw_A           26 LKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLV   71 (158)
T ss_dssp             HHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCE
T ss_pred             cccccCCCCEEEEECCCCCCHHHHHHHHHHhCCCCCeEEECCEeee
Confidence            577889999999999999999999999999873 244566665554

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=98.12  E-value=2.9e-06  Score=74.98  Aligned_cols=60  Identities=33%  Similarity=0.475  Sum_probs=43.9

Q ss_pred             CCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhh-hccccccHHHHHHHHHHHH
Q psy13773         18 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFGESEANVRDIFDKVT   77 (299)
Q Consensus        18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~-~~~~g~~~~~i~~~f~~a~   77 (299)
                      ..++..++|+||+|||||+++++++...+..++.++|.+.. ..........++.+|..+.
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~  121 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAY  121 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHH
Confidence            46678999999999999999999999999999888776532 1111122345666776654

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.09  E-value=3.8e-06  Score=68.85  Aligned_cols=56  Identities=20%  Similarity=0.441  Sum_probs=38.9

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhh----------cCCeecccchhhhh--ccccccHHHHHHHHH
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELLT--MWFGESEANVRDIFD   74 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l----------~~~~i~i~~~~l~~--~~~g~~~~~i~~~f~   74 (299)
                      ..+..++|+||+|+|||+++++++..+          +..++.+++..+..  .+.+.....++.++.
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLN  108 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHH
Confidence            456789999999999999999999986          45567777766642  223333344444444

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.06  E-value=2.2e-06  Score=72.29  Aligned_cols=40  Identities=33%  Similarity=0.457  Sum_probs=30.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVK   53 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~   53 (299)
                      ++|.+.++..++|+|++||||||+++.|+..++..++..+
T Consensus        18 ~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d   57 (199)
T 3vaa_A           18 LYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD   57 (199)
T ss_dssp             ------CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred             eeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence            5677788899999999999999999999999987776554

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.04  E-value=1.4e-06  Score=75.59  Aligned_cols=41  Identities=27%  Similarity=0.392  Sum_probs=34.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCC--eecccc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN--FISVKG   54 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~--~i~i~~   54 (299)
                      ++|.+.+++.++|.||||||||||+|+|++.+.+.  .+.+++
T Consensus        27 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g   69 (229)
T 2pze_A           27 INFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG   69 (229)
T ss_dssp             EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC
Confidence            56778999999999999999999999999987654  344443

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=98.03  E-value=5.1e-06  Score=74.15  Aligned_cols=55  Identities=31%  Similarity=0.611  Sum_probs=43.2

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhh-cccccc-HHHHHHHHH
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFGES-EANVRDIFD   74 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~-~~~g~~-~~~i~~~f~   74 (299)
                      .+..++|+||+|||||+++++++..++..++.++|.++.. .+.+.. ...++.++.
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  105 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTD  105 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHH
Confidence            4678999999999999999999999999999999988765 344432 344555554

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.03  E-value=1e-07  Score=84.91  Aligned_cols=55  Identities=18%  Similarity=0.138  Sum_probs=43.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC-CCCCCCCCcccccCCCCCCCeeee
Q psy13773        205 RSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNP-NQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       205 PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~-~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      |.++|+||.|++++++++.+.+.+   +.+|..| .-++.-..|+++|||||||||+|.
T Consensus        35 ~~~~~~~i~g~~~~~~~l~~l~~~---~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~   90 (278)
T 1iy2_A           35 PKVTFKDVAGAEEAKEELKEIVEF---LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA   90 (278)
T ss_dssp             CCCCGGGSSSCHHHHHHHHHHHHH---HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred             CCCCHHHhCChHHHHHHHHHHHHH---HHCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence            679999999999999999988766   5555432 223444567999999999999875

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.02  E-value=2.4e-06  Score=73.43  Aligned_cols=38  Identities=29%  Similarity=0.433  Sum_probs=27.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      ++|.+.+++.++|+||||||||||+++|++... +.+.+
T Consensus        16 isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p-G~i~~   53 (218)
T 1z6g_A           16 PRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP-NYFYF   53 (218)
T ss_dssp             ------CCCCEEEECSTTSSHHHHHHHHHHHST-TTEEE
T ss_pred             CceecCCCCEEEEECCCCCCHHHHHHHHHhhCC-CcEEE
Confidence            567889999999999999999999999999773 44444

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.02  E-value=1.4e-06  Score=76.09  Aligned_cols=41  Identities=29%  Similarity=0.552  Sum_probs=34.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKG   54 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~   54 (299)
                      ++|.+.+++.++|+||||||||||+|+|++.+.+  +.+.+++
T Consensus        24 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g   66 (237)
T 2cbz_A           24 ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG   66 (237)
T ss_dssp             EEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS
T ss_pred             eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence            5678899999999999999999999999998764  4455543

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=98.01  E-value=2.8e-06  Score=82.99  Aligned_cols=38  Identities=34%  Similarity=0.501  Sum_probs=33.8

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL   57 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l   57 (299)
                      ++..++|+||||||||||+++|++.++..++.++|..+
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~  144 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV  144 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence            67899999999999999999999999988888877654

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=98.00  E-value=2.3e-07  Score=88.74  Aligned_cols=51  Identities=14%  Similarity=0.070  Sum_probs=40.9

Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        203 ARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       203 ~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .+|...|+||.|.+++++.+.+.+++   ++.      +.....|+|||||||||||+|-
T Consensus        30 ~~~~~~~~~iiG~~~~~~~l~~~~~~---~~~------~~~~~~~iLl~GppGtGKT~la   80 (456)
T 2c9o_A           30 GLAKQAASGLVGQENAREACGVIVEL---IKS------KKMAGRAVLLAGPPGTGKTALA   80 (456)
T ss_dssp             SCBCSEETTEESCHHHHHHHHHHHHH---HHT------TCCTTCEEEEECCTTSSHHHHH
T ss_pred             cChhhchhhccCHHHHHHHHHHHHHH---HHh------CCCCCCeEEEECCCcCCHHHHH
Confidence            35778899999999999998888776   332      3334568999999999999874

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.00  E-value=1.8e-06  Score=85.38  Aligned_cols=28  Identities=29%  Similarity=0.389  Sum_probs=24.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhcCCe
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQANF   49 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~~   49 (299)
                      +.++|+||||||||||+|+|++.+.+..
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~  406 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGALKPDE  406 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSSCCSB
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence            6799999999999999999999876543

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.99  E-value=4.9e-06  Score=85.97  Aligned_cols=136  Identities=18%  Similarity=0.239  Sum_probs=80.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc-CC-Cch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG-KS-SPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~-~~-~~~   91 (299)
                      ++|.+.+|+.++|+||||||||||+|+|++  +    .+.+......        ++        ..+..+.. .. ...
T Consensus       454 vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--G----~i~g~~~~~~--------~~--------~~~v~q~~~~~~~~l  511 (986)
T 2iw3_A          454 TQLRLKRARRYGICGPNGCGKSTLMRAIAN--G----QVDGFPTQEE--------CR--------TVYVEHDIDGTHSDT  511 (986)
T ss_dssp             EEEEEETTCEEEEECSTTSSHHHHHHHHHH--T----CSTTCCCTTT--------SC--------EEETTCCCCCCCTTS
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhC--C----CcCCCccccc--------ee--------EEEEcccccccccCC
Confidence            577889999999999999999999999995  1    1111111000        00        00111100 00 011


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-HH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-NY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ...+.+..      . ....   .+|+..+++.+++ .. +.+....||||++|++....++..-.              
T Consensus       512 tv~e~l~~------~-~~~~---~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P--------------  567 (986)
T 2iw3_A          512 SVLDFVFE------S-GVGT---KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNA--------------  567 (986)
T ss_dssp             BHHHHHHT------T-CSSC---HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTC--------------
T ss_pred             cHHHHHHH------h-hcCH---HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCC--------------
Confidence            11122211      0 0111   5677778888888 44 45566889999999998776554311              


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHh
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRF  202 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~  202 (299)
                             .-+..+|+....++.+.+.|.+.|++
T Consensus       568 -------~lLLLDEPTs~LD~~~~~~l~~~L~~  593 (986)
T 2iw3_A          568 -------DILLLDEPTNHLDTVNVAWLVNYLNT  593 (986)
T ss_dssp             -------SEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             -------CEEEEECCccCCCHHHHHHHHHHHHh
Confidence                   12446667777777777888887776

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.97  E-value=6.1e-06  Score=67.57  Aligned_cols=40  Identities=23%  Similarity=0.463  Sum_probs=31.8

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhh----------cCCeecccchhhh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELL   58 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l----------~~~~i~i~~~~l~   58 (299)
                      .....++|+||+|+|||+++++++..+          +..++.+++..+.
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLI   90 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhh
Confidence            446789999999999999999999987          4455666666554

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.96  E-value=2.1e-05  Score=74.82  Aligned_cols=39  Identities=26%  Similarity=0.433  Sum_probs=32.8

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhh-----cCCeecccchhhhh
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLT   59 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l-----~~~~i~i~~~~l~~   59 (299)
                      +..++|+||+|+|||||+++|++.+     +..++++++.++..
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~  173 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN  173 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH
Confidence            4679999999999999999999987     56678888776543

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=97.90  E-value=6e-07  Score=85.35  Aligned_cols=62  Identities=10%  Similarity=0.013  Sum_probs=50.5

Q ss_pred             ccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCC--CCCcccccCCCCCCCeeee
Q psy13773        191 ITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQS--GGPNSAPANESGTGGILLM  262 (299)
Q Consensus       191 it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~--k~s~~l~~g~~gtg~~ll~  262 (299)
                      +|+.++.+.|.        ++|.|.+++|+.+...+.+  |.+++.+|.....  ...+||||||||||||++.
T Consensus         4 ~tP~~i~~~Ld--------~~IvGqe~ak~~l~~av~~--~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~la   67 (444)
T 1g41_A            4 MTPREIVSELD--------QHIIGQADAKRAVAIALRN--RWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIA   67 (444)
T ss_dssp             CCHHHHHHHHH--------TTCCSCHHHHHHHHHHHHH--HHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHH
T ss_pred             CCHHHHHHHHH--------HHhCCHHHHHHHHHHHHHH--HHhhhccccccccccCCceEEEEcCCCCCHHHHH
Confidence            67788888775        5677999999999999999  9888888764432  2468999999999999873

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.89  E-value=1.1e-05  Score=74.72  Aligned_cols=55  Identities=25%  Similarity=0.478  Sum_probs=39.3

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhh-hcccccc-HHHHHHHHH
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFGES-EANVRDIFD   74 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~-~~~~g~~-~~~i~~~f~   74 (299)
                      .+..++|+||+|||||+++++||..++..++.++|..+. ..+.+.. ...+..++.
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  127 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQ  127 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHh
Confidence            456799999999999999999999999999999988775 2344432 334444443

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.89  E-value=7e-06  Score=68.95  Aligned_cols=31  Identities=26%  Similarity=0.408  Sum_probs=25.8

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      +.+.+++.++|.||||||||||+++|++...
T Consensus         2 ~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            2 NAMNKANLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             ---CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            4566789999999999999999999999753

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.88  E-value=7e-06  Score=69.69  Aligned_cols=31  Identities=19%  Similarity=0.352  Sum_probs=25.7

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      ..+.+++.++|+||||||||||+|+|++.+.
T Consensus        15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             ----CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            5788999999999999999999999999874

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.87  E-value=3.6e-06  Score=75.78  Aligned_cols=41  Identities=27%  Similarity=0.388  Sum_probs=34.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKG   54 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~   54 (299)
                      ++|.+.+++.++|+||||||||||+|+|++.+.+  +.+.+++
T Consensus        57 isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g   99 (290)
T 2bbs_A           57 INFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG   99 (290)
T ss_dssp             EEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC
Confidence            4677899999999999999999999999998754  4455543

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.85  E-value=2.6e-06  Score=85.27  Aligned_cols=25  Identities=28%  Similarity=0.468  Sum_probs=23.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHH
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLA   38 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLl   38 (299)
                      ++|.+.+++.+.|+||||||||||+
T Consensus        37 vsl~i~~Ge~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           37 IDVEIPRGKLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             EEEEEETTSEEEEECSTTSSHHHHH
T ss_pred             cEEEECCCCEEEEECCCCCCHHHHh
Confidence            6778899999999999999999997

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.85  E-value=1.1e-05  Score=68.04  Aligned_cols=37  Identities=30%  Similarity=0.522  Sum_probs=29.9

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL   57 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l   57 (299)
                      .+++.++|.|||||||||++++|++.++  .+.+++.++
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g--~~~i~~d~~   63 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVADETG--LEFAEADAF   63 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHHC--CEEEEGGGG
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhhC--CeEEccccc
Confidence            5688999999999999999999999884  455555544

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.84  E-value=8e-06  Score=69.39  Aligned_cols=40  Identities=28%  Similarity=0.448  Sum_probs=32.1

Q ss_pred             CCCCcEEEEEcCCCChHHHHHHHHHHhhc-----CCeecccchhh
Q psy13773         18 MQPSRGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPEL   57 (299)
Q Consensus        18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-----~~~i~i~~~~l   57 (299)
                      ..++..++|.||||||||||+++|++.+.     .+.+.+++..+
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~   63 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL   63 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence            46789999999999999999999999876     34555655443

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.82  E-value=7.8e-06  Score=67.40  Aligned_cols=29  Identities=28%  Similarity=0.407  Sum_probs=25.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHH
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIA   42 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La   42 (299)
                      ++|.+.+++.++|+||||||||||++++.
T Consensus         2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A            2 MKLTIPELSLVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred             ccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence            46778899999999999999999999744

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.81  E-value=1.1e-05  Score=70.39  Aligned_cols=34  Identities=18%  Similarity=0.118  Sum_probs=27.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      ++|.+.++..++|.||+|||||||+++|++.++.
T Consensus        18 isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~   51 (245)
T 2jeo_A           18 LYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQ   51 (245)
T ss_dssp             -----CCSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred             eeccCCCCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence            5677889999999999999999999999998753

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.80  E-value=4.9e-06  Score=66.55  Aligned_cols=40  Identities=18%  Similarity=0.191  Sum_probs=34.5

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhc
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM   60 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~   60 (299)
                      .+..++|+||+|||||+++++|+.... .++.++|.++...
T Consensus        26 ~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~   65 (143)
T 3co5_A           26 RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLID   65 (143)
T ss_dssp             CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHH
T ss_pred             CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChH
Confidence            456799999999999999999999877 8899998876543

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.79  E-value=1.1e-05  Score=65.34  Aligned_cols=38  Identities=18%  Similarity=0.323  Sum_probs=30.8

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhh---cCCeecccchhh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPEL   57 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~~~~l   57 (299)
                      +++.++|+||+|+|||||++++++.+   +...+++++.++
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~   75 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASM   75 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHh
Confidence            78899999999999999999999977   333566665544

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.79  E-value=1.3e-05  Score=64.23  Aligned_cols=41  Identities=22%  Similarity=0.345  Sum_probs=33.5

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhh---cCCeecccchhhhhc
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM   60 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~~~~l~~~   60 (299)
                      ..+..++|+||+|||||+++++|+...   +..++ ++|..+...
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~   65 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA   65 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc
Confidence            345679999999999999999999976   45677 988876543

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.79  E-value=1.3e-05  Score=72.65  Aligned_cols=36  Identities=22%  Similarity=0.452  Sum_probs=32.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFI   50 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i   50 (299)
                      +++.+++++.++|+||||||||||+++|++.+ .+.+
T Consensus       119 vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I  154 (305)
T 2v9p_A          119 WLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-GGSV  154 (305)
T ss_dssp             HHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-TCEE
T ss_pred             ceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-CceE
Confidence            57789999999999999999999999999988 4444

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.79  E-value=1.1e-05  Score=73.20  Aligned_cols=41  Identities=27%  Similarity=0.370  Sum_probs=34.8

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhh---cCCeecccchhhhhc
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM   60 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~~~~l~~~   60 (299)
                      .+..++|+||+|||||||+++++..+   +..++++++.++...
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~   79 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQA   79 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
Confidence            35689999999999999999999988   678888888776543

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.77  E-value=1.2e-05  Score=67.80  Aligned_cols=40  Identities=23%  Similarity=0.213  Sum_probs=32.1

Q ss_pred             CCCCcEEEEEcCCCChHHHHHHHHHHhhcC-Ce--ecccchhh
Q psy13773         18 MQPSRGVLFYGPPGCGKTLLAKAIANECQA-NF--ISVKGPEL   57 (299)
Q Consensus        18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~-~~--i~i~~~~l   57 (299)
                      ..++..+.|.||+||||||++++|++.+.. +.  +.+++.++
T Consensus        22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~   64 (200)
T 3uie_A           22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV   64 (200)
T ss_dssp             TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence            467899999999999999999999998842 23  36666655

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.76  E-value=2.7e-05  Score=77.86  Aligned_cols=29  Identities=21%  Similarity=0.289  Sum_probs=26.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHH
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIA   42 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La   42 (299)
                      ++|.+.+++.++|+||||||||||+++|.
T Consensus       341 vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          341 VSVKIPLGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             EEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred             ceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence            56778899999999999999999998764

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.76  E-value=1.8e-05  Score=75.88  Aligned_cols=56  Identities=23%  Similarity=0.490  Sum_probs=37.4

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhh----------cCCeecccchhhhhccccccHHHHHHHHHHHH
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELLTMWFGESEANVRDIFDKVT   77 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l----------~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~   77 (299)
                      .....++|+||||||||+++++||..+          +..++.+++.   ..+.|+.+..++.+|..+.
T Consensus       199 ~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~  264 (468)
T 3pxg_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIR  264 (468)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHH
T ss_pred             cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHH
Confidence            345689999999999999999999987          5567777776   4556666666777777655

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=97.76  E-value=1.8e-05  Score=72.03  Aligned_cols=40  Identities=15%  Similarity=0.196  Sum_probs=33.6

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhc----------CCeecccchhhh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQ----------ANFISVKGPELL   58 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~----------~~~i~i~~~~l~   58 (299)
                      ..+.+++|+||||||||++++.++.++.          ..+++|+|..+.
T Consensus        43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~   92 (318)
T 3te6_A           43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA   92 (318)
T ss_dssp             TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence            5788999999999999999999999883          346788887653

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.75  E-value=2e-05  Score=64.71  Aligned_cols=33  Identities=12%  Similarity=0.345  Sum_probs=28.7

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVK   53 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~   53 (299)
                      +..|+|+|++||||||+++.|+..++..++.++
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~   35 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFG   35 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEec
Confidence            467999999999999999999999987776544

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.73  E-value=1.4e-05  Score=65.26  Aligned_cols=30  Identities=27%  Similarity=0.658  Sum_probs=26.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFI   50 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i   50 (299)
                      +..++|+|++||||||++++|++.++..++
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i   33 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY   33 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            567999999999999999999999876443

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.73  E-value=9.4e-06  Score=69.95  Aligned_cols=32  Identities=22%  Similarity=0.323  Sum_probs=22.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHH-Hhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIA-NEC   45 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La-~~l   45 (299)
                      ++|.+.+++.++|+||+||||||++++|+ +..
T Consensus        20 ~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           20 GSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             --CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            56788899999999999999999999999 875

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.73  E-value=1.8e-05  Score=70.04  Aligned_cols=45  Identities=22%  Similarity=0.344  Sum_probs=35.6

Q ss_pred             hhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc---CCeecccc
Q psy13773         10 PEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKG   54 (299)
Q Consensus        10 p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~---~~~i~i~~   54 (299)
                      +..+..+.+.++..++|+||+||||||++++|++.+.   .+.+.+++
T Consensus        14 ~~vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g   61 (261)
T 2eyu_A           14 PDKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE   61 (261)
T ss_dssp             CTHHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             HHHHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcC
Confidence            4566666788999999999999999999999999764   34444443

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.73  E-value=2e-05  Score=76.43  Aligned_cols=40  Identities=30%  Similarity=0.563  Sum_probs=35.5

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT   59 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~   59 (299)
                      ....++|+||+|||||++++++|.+++..+++++|.++..
T Consensus        76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~  115 (516)
T 1sxj_A           76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRS  115 (516)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcch
Confidence            4579999999999999999999999998899998876543

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.72  E-value=1.8e-05  Score=72.24  Aligned_cols=31  Identities=52%  Similarity=0.665  Sum_probs=26.4

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFIS   51 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~   51 (299)
                      ...++|+||||||||||+++||+.++..+..
T Consensus        51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~   81 (334)
T 1in4_A           51 LDHVLLAGPPGLGKTTLAHIIASELQTNIHV   81 (334)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            3679999999999999999999998655433

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.69  E-value=2.4e-05  Score=71.03  Aligned_cols=38  Identities=39%  Similarity=0.562  Sum_probs=33.6

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL   57 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l   57 (299)
                      +...++|+||+|||||+++++++..++..++.++|..+
T Consensus        54 ~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~   91 (338)
T 3pfi_A           54 CLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMI   91 (338)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGC
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhc
Confidence            44579999999999999999999999999988887654

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.68  E-value=9.3e-07  Score=79.35  Aligned_cols=51  Identities=8%  Similarity=0.156  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC----CCCCCCCcccccCCCCCCCeeee
Q psy13773        209 DADIRKYEMFAQTLQQSRGFGTNFRFPSNPN----QSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       209 w~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~----~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      |.||.|++++|+.+.+.+.+  +. ++..+.    ..-+...++|||||||||||+|.
T Consensus        30 ~~~i~G~~~~~~~l~~~~~~--~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la   84 (309)
T 3syl_A           30 DRELIGLKPVKDRIRETAAL--LL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVA   84 (309)
T ss_dssp             HHHSSSCHHHHHHHHHHHHH--HH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHH
T ss_pred             HHHccChHHHHHHHHHHHHH--HH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHH
Confidence            56899999999999999887  43 333221    11133457999999999999886

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.67  E-value=2.1e-05  Score=65.38  Aligned_cols=38  Identities=32%  Similarity=0.441  Sum_probs=29.7

Q ss_pred             cCCCCCCcEEEEEcCCCChHHHHHHHHHHh-hcCCeecc
Q psy13773         15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANE-CQANFISV   52 (299)
Q Consensus        15 sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~-l~~~~i~i   52 (299)
                      ++....+..|+|+|++||||||+++.|+.. ++..++..
T Consensus         4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~   42 (184)
T 1y63_A            4 SMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEV   42 (184)
T ss_dssp             --CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred             CcCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence            345556778999999999999999999998 66555544

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.66  E-value=2.9e-05  Score=63.67  Aligned_cols=37  Identities=24%  Similarity=0.365  Sum_probs=29.1

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL   57 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l   57 (299)
                      .++..++|+|++||||||++++|++.++.  +.+++.++
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~--~~i~~d~~   42 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQLHA--AFLDGDFL   42 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTC--EEEEGGGG
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhhCc--EEEeCccc
Confidence            35778999999999999999999998754  44444443

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.66  E-value=2.1e-05  Score=67.05  Aligned_cols=30  Identities=30%  Similarity=0.351  Sum_probs=27.6

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      -++.+++.++|+||||||||||+++|++..
T Consensus        20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           20 GGIETQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            478999999999999999999999999854

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.66  E-value=2.5e-05  Score=65.95  Aligned_cols=28  Identities=36%  Similarity=0.572  Sum_probs=23.1

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      ++++.++|+||||+|||||+++|++...
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            4678899999999999999999999753

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.64  E-value=3.2e-05  Score=64.14  Aligned_cols=35  Identities=31%  Similarity=0.456  Sum_probs=29.4

Q ss_pred             CCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         18 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      +..+..|+|.|++||||||+++.|+..++..++..
T Consensus         2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~   36 (193)
T 2rhm_A            2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSK   36 (193)
T ss_dssp             CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence            35677899999999999999999999887665543

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.64  E-value=3e-05  Score=69.34  Aligned_cols=37  Identities=38%  Similarity=0.531  Sum_probs=30.9

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhc---CCeecccchhh
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPEL   57 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~---~~~i~i~~~~l   57 (299)
                      ...++|+||+|||||+++++|+..+.   ..++.++|..+
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~   86 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY   86 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence            45799999999999999999999874   34777777665

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.63  E-value=3e-05  Score=65.07  Aligned_cols=29  Identities=24%  Similarity=0.374  Sum_probs=25.5

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      .+.++..++|+||+||||||+++.|++.+
T Consensus         2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            45678999999999999999999999987

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.62  E-value=3.1e-05  Score=63.96  Aligned_cols=33  Identities=18%  Similarity=0.264  Sum_probs=28.8

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVK   53 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~   53 (299)
                      +..|+|+|++||||||+++.|+..++..++..|
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d   37 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD   37 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence            567999999999999999999999987776554

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.62  E-value=3.5e-05  Score=64.64  Aligned_cols=36  Identities=44%  Similarity=0.577  Sum_probs=29.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhc---CCeecccchhh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPEL   57 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~---~~~i~i~~~~l   57 (299)
                      ..++|+||+|+|||+|+++++..+.   ..++.+++.++
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~   93 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL   93 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence            7899999999999999999999774   34555665544

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.61  E-value=3e-05  Score=70.12  Aligned_cols=44  Identities=18%  Similarity=0.309  Sum_probs=35.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPEL   57 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l   57 (299)
                      .++.+.+++.++|+|||||||||+++.||+.+.  .+.+.+.+.++
T Consensus        93 l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~  138 (302)
T 3b9q_A           93 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT  138 (302)
T ss_dssp             CCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             cccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence            456678899999999999999999999999775  34455555544

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.59  E-value=3.5e-05  Score=64.11  Aligned_cols=24  Identities=38%  Similarity=0.625  Sum_probs=22.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      .++|+||||||||||+++|++.++
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999999886

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.59  E-value=3.8e-05  Score=66.16  Aligned_cols=30  Identities=23%  Similarity=0.333  Sum_probs=25.6

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      ..++++.++|+||||||||||+++|++...
T Consensus        12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            457899999999999999999999999875

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.58  E-value=3.6e-05  Score=65.04  Aligned_cols=28  Identities=29%  Similarity=0.246  Sum_probs=25.5

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      .++..++|.||+|||||||+++|++.++
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5778999999999999999999999877

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=97.58  E-value=6.3e-05  Score=71.64  Aligned_cols=49  Identities=27%  Similarity=0.544  Sum_probs=38.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHH
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVT   77 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~   77 (299)
                      ..++|+||+||||||++++|+..++..++.+++...       ....++.+|..+.
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~-------~~~~ir~~~~~a~   99 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVTS-------GVKEIREAIERAR   99 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC-------CHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC-------CHHHHHHHHHHHH
Confidence            579999999999999999999999988888875432       2345666666554

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.57  E-value=1.1e-05  Score=68.92  Aligned_cols=34  Identities=35%  Similarity=0.380  Sum_probs=28.5

Q ss_pred             CCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         18 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      +.+++.++|+||||||||||+++|++. .+....|
T Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I   52 (208)
T 3b85_A           19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV   52 (208)
T ss_dssp             HHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence            578999999999999999999999998 5433333

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.57  E-value=7.5e-05  Score=81.08  Aligned_cols=62  Identities=21%  Similarity=0.244  Sum_probs=47.8

Q ss_pred             CCCCcEEEEEcCCCChHHHHHHHHHHhhcCC-----eecccc--hhhh--------hccccc----cHHHHHHHHHHHHH
Q psy13773         18 MQPSRGVLFYGPPGCGKTLLAKAIANECQAN-----FISVKG--PELL--------TMWFGE----SEANVRDIFDKVTM   78 (299)
Q Consensus        18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~-----~i~i~~--~~l~--------~~~~g~----~~~~i~~~f~~a~~   78 (299)
                      ++.++.++||||+|||||+|+++++.+...+     |+.+..  .++.        ++|+++    .++.++.+|..|+.
T Consensus      1079 ~p~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~ 1158 (1706)
T 3cmw_A         1079 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1158 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHh
Confidence            5677889999999999999999999876544     454443  2333        567777    79999999988875


Q ss_pred             H
Q psy13773         79 E   79 (299)
Q Consensus        79 ~   79 (299)
                      .
T Consensus      1159 ~ 1159 (1706)
T 3cmw_A         1159 G 1159 (1706)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.56  E-value=1.9e-05  Score=69.45  Aligned_cols=39  Identities=26%  Similarity=0.389  Sum_probs=33.0

Q ss_pred             hcCCCCC---CcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         14 LKFGMQP---SRGVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        14 ~sl~i~~---~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      +++.+.+   ++.+.|+|++||||||+++.|+..++..++..
T Consensus        38 ~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~   79 (250)
T 3nwj_A           38 KAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC   79 (250)
T ss_dssp             HHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred             hhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence            4556677   89999999999999999999999998766543

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.56  E-value=4.5e-05  Score=71.05  Aligned_cols=37  Identities=32%  Similarity=0.512  Sum_probs=31.7

Q ss_pred             cCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773         15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFIS   51 (299)
Q Consensus        15 sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~   51 (299)
                      ++++++++.++|+||||||||||+++|++..+...+.
T Consensus       163 ~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~  199 (377)
T 1svm_A          163 VYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN  199 (377)
T ss_dssp             HHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             ccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence            4678999999999999999999999999987654443

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.55  E-value=7.7e-05  Score=84.96  Aligned_cols=56  Identities=21%  Similarity=0.322  Sum_probs=42.4

Q ss_pred             eeeccCcChhhhhcCC--CCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhh
Q psy13773          2 ISTYPVEHPEKFLKFG--MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL   58 (299)
Q Consensus         2 ~v~~pl~~p~~~~sl~--i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~   58 (299)
                      +|+.||+. .-|..+.  +....+.++.||.|||||.+++.||..++...+.++|++-.
T Consensus       584 LViTPLTd-rcy~tl~~Al~~~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~  641 (3245)
T 3vkg_A          584 LVQTPLTD-RCYLTLTQALESRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGF  641 (3245)
T ss_dssp             CCCCHHHH-HHHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCC
T ss_pred             CcCChHHH-HHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCC
Confidence            45666654 2333332  34566788999999999999999999999999999987643

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.55  E-value=4.2e-05  Score=73.42  Aligned_cols=44  Identities=11%  Similarity=0.180  Sum_probs=36.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELL   58 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~   58 (299)
                      ++|.+.+ +.++|+||||||||||+++|++.+.+  +.+.+++.++.
T Consensus        23 vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~   68 (483)
T 3euj_A           23 RTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA   68 (483)
T ss_dssp             EEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred             eEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence            5677888 99999999999999999999998764  55667666553

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.54  E-value=5.4e-05  Score=62.35  Aligned_cols=39  Identities=21%  Similarity=0.287  Sum_probs=31.7

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhh---cCCeecccchhh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPEL   57 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~~~~l   57 (299)
                      .++..++|.|++||||||+++.|+..+   +..++.+++..+
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~   44 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI   44 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence            357889999999999999999999987   666776665544

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.54  E-value=5.9e-05  Score=61.19  Aligned_cols=31  Identities=23%  Similarity=0.351  Sum_probs=27.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANFISVK   53 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~   53 (299)
                      .|+|.|++||||||+++.|+..++..++..+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d   33 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS   33 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence            5889999999999999999999987766554

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.54  E-value=4.2e-05  Score=63.53  Aligned_cols=36  Identities=25%  Similarity=0.422  Sum_probs=27.6

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL   57 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l   57 (299)
                      ++.++|+|||||||||++++|++.. .+.+.+++.++
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~-~g~~~i~~d~~   37 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQL-DNSAYIEGDII   37 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHS-SSEEEEEHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhccc-CCeEEEcccch
Confidence            4578999999999999999999844 23455665554

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.53  E-value=5.1e-05  Score=62.83  Aligned_cols=27  Identities=11%  Similarity=0.374  Sum_probs=24.4

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      .++.++|+||||||||||+++|++...
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            578899999999999999999999764

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=97.53  E-value=5.7e-05  Score=66.25  Aligned_cols=39  Identities=31%  Similarity=0.424  Sum_probs=33.2

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhc---CCeecccchhhh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELL   58 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~---~~~i~i~~~~l~   58 (299)
                      .+..++|+||+|||||+++++|+....   ..++.++|..+.
T Consensus        28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~   69 (265)
T 2bjv_A           28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN   69 (265)
T ss_dssp             SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSC
T ss_pred             CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCC
Confidence            456899999999999999999999775   468889988763

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.51  E-value=5.4e-05  Score=66.29  Aligned_cols=40  Identities=25%  Similarity=0.456  Sum_probs=33.2

Q ss_pred             CCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773         18 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL   57 (299)
Q Consensus        18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l   57 (299)
                      ...+..++|.|+|||||||+++.|+..++.+.+.+++..+
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~   68 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF   68 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence            4567889999999999999999999998766666666554

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=97.51  E-value=4.1e-05  Score=69.42  Aligned_cols=34  Identities=26%  Similarity=0.417  Sum_probs=30.2

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeecccc
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKG   54 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~   54 (299)
                      +..++|+||||||||+++++++..++..++.++|
T Consensus        46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~   79 (331)
T 2r44_A           46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQF   79 (331)
T ss_dssp             TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEec
Confidence            5689999999999999999999998877776665

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=97.51  E-value=4.3e-05  Score=68.70  Aligned_cols=38  Identities=45%  Similarity=0.795  Sum_probs=33.3

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL   57 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l   57 (299)
                      .+..++|+||+|||||+++++++..++..++.++|..+
T Consensus        37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~   74 (324)
T 1hqc_A           37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI   74 (324)
T ss_dssp             CCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTC
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence            45689999999999999999999999888888877654

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.50  E-value=4.9e-05  Score=70.34  Aligned_cols=44  Identities=18%  Similarity=0.309  Sum_probs=35.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPEL   57 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l   57 (299)
                      .++.+.+++.++|+|||||||||+++.||+.+.  .+.+.+.+.++
T Consensus       150 l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~  195 (359)
T 2og2_A          150 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT  195 (359)
T ss_dssp             CCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             cceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccc
Confidence            456778899999999999999999999999775  34455555544

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.50  E-value=9e-05  Score=68.25  Aligned_cols=35  Identities=23%  Similarity=0.352  Sum_probs=31.4

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFI   50 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i   50 (299)
                      +.+.+|+.++|+||||||||||+++|++.......
T Consensus        66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g  100 (347)
T 2obl_A           66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADII  100 (347)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred             eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEE
Confidence            77889999999999999999999999998876543

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.50  E-value=5.7e-05  Score=62.22  Aligned_cols=35  Identities=34%  Similarity=0.564  Sum_probs=29.2

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVK   53 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~   53 (299)
                      ..+..|+|+|++||||||+++.|+..++..++..+
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d   43 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVG   43 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence            35677999999999999999999999886665543

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.50  E-value=5.8e-05  Score=69.77  Aligned_cols=38  Identities=24%  Similarity=0.408  Sum_probs=33.1

Q ss_pred             hhhcCCCCC--CcEEEEEcCCCChHHHHHHHHHHhhcCCe
Q psy13773         12 KFLKFGMQP--SRGVLFYGPPGCGKTLLAKAIANECQANF   49 (299)
Q Consensus        12 ~~~sl~i~~--~~~vLL~Gp~GsGKTtLlr~La~~l~~~~   49 (299)
                      .++++.+.+  ++.++|+||||||||||+++|++.+....
T Consensus       159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~  198 (365)
T 1lw7_A          159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS  198 (365)
T ss_dssp             GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred             hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence            357778888  99999999999999999999999877544

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.49  E-value=6.9e-05  Score=62.96  Aligned_cols=31  Identities=32%  Similarity=0.619  Sum_probs=26.7

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFIS   51 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~   51 (299)
                      +..|+|.|++||||||+++.|+..++..++.
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~   48 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE   48 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence            4679999999999999999999998755544

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.49  E-value=6.5e-05  Score=64.52  Aligned_cols=29  Identities=21%  Similarity=0.280  Sum_probs=27.0

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -++.++..++|+||||+|||||++.++..
T Consensus        19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           19 GGIETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            36899999999999999999999999984

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=97.49  E-value=7.7e-06  Score=74.44  Aligned_cols=45  Identities=18%  Similarity=0.008  Sum_probs=33.7

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .+..+|++|-|.+.+++.+...+..  +            ...++|||||||||||+|.
T Consensus        18 ~~~~~f~~i~G~~~~~~~l~~~~~~--~------------~~~~vLl~G~~GtGKT~la   62 (350)
T 1g8p_A           18 RPVFPFSAIVGQEDMKLALLLTAVD--P------------GIGGVLVFGDRGTGKSTAV   62 (350)
T ss_dssp             CCCCCGGGSCSCHHHHHHHHHHHHC--G------------GGCCEEEECCGGGCTTHHH
T ss_pred             CCCCCchhccChHHHHHHHHHHhhC--C------------CCceEEEECCCCccHHHHH
Confidence            3558899999988888876555433  2            2235999999999999874

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.49  E-value=6.5e-06  Score=79.80  Aligned_cols=60  Identities=7%  Similarity=-0.129  Sum_probs=44.2

Q ss_pred             HHhccCCCCHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCCCCCCC----CCCcccccCCCCCCCeeee
Q psy13773        200 MRFARRSVNDADIRKYEMFAQTLQQSRG-FGTNFRFPSNPNQSQS----GGPNSAPANESGTGGILLM  262 (299)
Q Consensus       200 L~~~~PsVsw~DIggL~~vk~~i~~ti~-~~~Plk~Pe~~~~~~~----k~s~~l~~g~~gtg~~ll~  262 (299)
                      .++++| .+|+||.|.+..++.+.+.+. |  +..+|..|.....    ...++|||||||||||+|.
T Consensus        30 ~ekyrP-~~~~dliG~~~~~~~L~~~l~~~--~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla   94 (516)
T 1sxj_A           30 TVKYAP-TNLQQVCGNKGSVMKLKNWLANW--ENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAA   94 (516)
T ss_dssp             HHHTCC-SSGGGCCSCHHHHHHHHHHHHTH--HHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHH
T ss_pred             ccccCC-CCHHHhcCCHHHHHHHHHHHHHh--HhhchhhccccCccCCCCCcEEEEECCCCCCHHHHH
Confidence            456788 689999999999999888765 4  4444455543222    3468999999999999873

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.48  E-value=9.4e-05  Score=62.48  Aligned_cols=38  Identities=29%  Similarity=0.322  Sum_probs=31.6

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccc
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKG   54 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~   54 (299)
                      ++.++..++|+||||+|||||++.++...+...++++.
T Consensus        16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~   53 (220)
T 2cvh_A           16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT   53 (220)
T ss_dssp             SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence            68999999999999999999999999844445555553

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.47  E-value=7.6e-05  Score=64.86  Aligned_cols=29  Identities=28%  Similarity=0.481  Sum_probs=25.5

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCC
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQAN   48 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~   48 (299)
                      .+..++|+|||||||||++++|+..++..
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~   54 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQ   54 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            46899999999999999999999877643

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.46  E-value=7.2e-05  Score=67.89  Aligned_cols=30  Identities=13%  Similarity=0.029  Sum_probs=27.4

Q ss_pred             CCCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         18 MQPSRGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      +.++..++|.||||||||||+++|++.+..
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence            678999999999999999999999997753

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.46  E-value=5.8e-05  Score=72.51  Aligned_cols=43  Identities=19%  Similarity=0.253  Sum_probs=34.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPE   56 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~   56 (299)
                      ++|.+..+..++|+|+||||||||+++|++.+..  +.+.+.+.+
T Consensus       286 Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D  330 (503)
T 2yhs_A          286 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD  330 (503)
T ss_dssp             CCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             ceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCc
Confidence            4567788999999999999999999999997753  445554433

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.46  E-value=7e-05  Score=66.89  Aligned_cols=33  Identities=15%  Similarity=0.245  Sum_probs=29.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      +++++.+++.++|.||||+|||||+++|+..+.
T Consensus        28 i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~   60 (296)
T 1cr0_A           28 KTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG   60 (296)
T ss_dssp             HHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             HhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            347899999999999999999999999999764

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.44  E-value=9.4e-05  Score=62.75  Aligned_cols=29  Identities=21%  Similarity=0.421  Sum_probs=26.0

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      .+++.++|+||+|+||||+++.|+..+..
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            46889999999999999999999998754

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.44  E-value=3.1e-05  Score=71.65  Aligned_cols=42  Identities=33%  Similarity=0.518  Sum_probs=35.0

Q ss_pred             hhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceeccc
Q psy13773         12 KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVK   53 (299)
Q Consensus        12 ~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~   53 (299)
                      .+.++.+.+++.++|.||+|||||||+++|++.+..  +.+.++
T Consensus       166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie  209 (361)
T 2gza_A          166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE  209 (361)
T ss_dssp             HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred             HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence            346778899999999999999999999999998764  445554

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.44  E-value=8.3e-05  Score=66.58  Aligned_cols=39  Identities=36%  Similarity=0.537  Sum_probs=31.6

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL   57 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l   57 (299)
                      ..+..++|.|||||||||+++.|+..+....+.|++..+
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~   69 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF   69 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence            457789999999999999999999987555666765444

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.43  E-value=7.1e-05  Score=68.77  Aligned_cols=38  Identities=34%  Similarity=0.389  Sum_probs=32.6

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhh-----------cCCeecccchhh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANEC-----------QANFISVKGPEL   57 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l-----------~~~~i~i~~~~l   57 (299)
                      .+..++|+||+|+|||+++++++..+           +..+++++|...
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~   92 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREV   92 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccC
Confidence            45689999999999999999999987           677788887654

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.43  E-value=6.1e-05  Score=62.17  Aligned_cols=32  Identities=38%  Similarity=0.600  Sum_probs=26.8

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFIS   51 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~   51 (299)
                      .+..|+|.|++||||||+++.|+..++..++.
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~   34 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLS   34 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence            45679999999999999999999988754443

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.43  E-value=0.0001  Score=62.50  Aligned_cols=29  Identities=24%  Similarity=0.425  Sum_probs=26.8

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      ++.+++.++|+||||+|||||+++++...
T Consensus        19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           19 GIPQGFFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             SEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            68899999999999999999999999754

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.43  E-value=6.6e-05  Score=68.64  Aligned_cols=38  Identities=18%  Similarity=0.419  Sum_probs=32.3

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhh------cCCeecccchh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANEC------QANFISVKGPE   56 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l------~~~~i~i~~~~   56 (299)
                      ..+..++|+||+|+|||||++++++.+      +..+++++|..
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~   86 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ   86 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence            346789999999999999999999987      66778888754

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.42  E-value=9.3e-05  Score=64.93  Aligned_cols=32  Identities=34%  Similarity=0.421  Sum_probs=27.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCeecccc
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANFISVKG   54 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~   54 (299)
                      .++|+||+||||||+++.||..++..++..|.
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~   34 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR   34 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence            58899999999999999999998877766554

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.42  E-value=5.8e-05  Score=69.12  Aligned_cols=39  Identities=26%  Similarity=0.374  Sum_probs=32.9

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhh---------cCCeecccchhh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPEL   57 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l---------~~~~i~i~~~~l   57 (299)
                      ..+..++|+||+|+|||+++++++..+         +..+++++|...
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   89 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR   89 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence            456789999999999999999999987         566778887653

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.42  E-value=5.1e-05  Score=72.56  Aligned_cols=41  Identities=15%  Similarity=0.212  Sum_probs=33.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CC-e-ecccc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--AN-F-ISVKG   54 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~-~-i~i~~   54 (299)
                      +++.+.+++.++|+||+|||||||+|+|++...  .+ . +.+++
T Consensus       131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg  175 (460)
T 2npi_A          131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL  175 (460)
T ss_dssp             HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC
T ss_pred             CceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC
Confidence            567788999999999999999999999999764  23 3 55554

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.42  E-value=9.7e-05  Score=70.18  Aligned_cols=35  Identities=20%  Similarity=0.363  Sum_probs=31.3

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFI   50 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i   50 (299)
                      |.+.+++.++|+||||||||||+++|++.......
T Consensus       152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G  186 (438)
T 2dpy_A          152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVI  186 (438)
T ss_dssp             SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeE
Confidence            77889999999999999999999999998775543

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.41  E-value=6e-05  Score=69.72  Aligned_cols=37  Identities=30%  Similarity=0.380  Sum_probs=30.3

Q ss_pred             hhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         10 PEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        10 p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      |+.+.++...++..++|.||+||||||++++|++.+.
T Consensus       112 ~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~  148 (356)
T 3jvv_A          112 GEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN  148 (356)
T ss_dssp             CHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence            4445555556778999999999999999999999765

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.40  E-value=7.1e-05  Score=61.40  Aligned_cols=30  Identities=33%  Similarity=0.603  Sum_probs=26.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      .++|.|++||||||+++.||..++..++..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~   35 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS   35 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence            589999999999999999999988665543

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.39  E-value=7.6e-05  Score=69.36  Aligned_cols=37  Identities=24%  Similarity=0.427  Sum_probs=31.6

Q ss_pred             hhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         10 PEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        10 p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      |+.+..+.+.++..++|+||+||||||++++|++.+.
T Consensus       125 ~~~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          125 PDKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             CSSHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CHHHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            4455666678899999999999999999999999764

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=97.39  E-value=8.7e-05  Score=63.29  Aligned_cols=32  Identities=22%  Similarity=0.427  Sum_probs=26.9

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhhcCC
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQAN   48 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~   48 (299)
                      +++...+++|+|||||||||++.+||+.+.-.
T Consensus        54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~   85 (212)
T 1tue_A           54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGA   85 (212)
T ss_dssp             TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCE
T ss_pred             cCCcccEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            35556689999999999999999999987533

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.39  E-value=1.4e-05  Score=71.18  Aligned_cols=62  Identities=10%  Similarity=-0.009  Sum_probs=42.7

Q ss_pred             ccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC--CCCCCcccccCCCCCCCeeee
Q psy13773        191 ITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQS--QSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       191 it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~--~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      ++++++.+.+...        |-|.+++++.+...+..  +.+++.+....  -....++|||||||||||.|.
T Consensus         4 ~~~~~l~~~l~~~--------i~G~~~~~~~l~~~l~~--~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la   67 (310)
T 1ofh_A            4 MTPREIVSELDQH--------IIGQADAKRAVAIALRN--RWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIA   67 (310)
T ss_dssp             CCHHHHHHHHHTT--------CCSCHHHHHHHHHHHHH--HHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHH
T ss_pred             CCHHHHHHHHhhh--------cCChHHHHHHHHHHHHH--HHhhhhhcccccccCCCceEEEECCCCCCHHHHH
Confidence            5778888888643        44777788888877765  55555543211  123468999999999999874

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.39  E-value=0.0001  Score=64.50  Aligned_cols=31  Identities=29%  Similarity=0.395  Sum_probs=26.8

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcCCe
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQANF   49 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~   49 (299)
                      .++..|.|.||+||||||+++.|+..++..+
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~   55 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL   55 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence            4678899999999999999999998877543

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.37  E-value=8.7e-05  Score=61.23  Aligned_cols=32  Identities=19%  Similarity=0.466  Sum_probs=27.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQANFISVK   53 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~   53 (299)
                      ..|+|.|++||||||+++.|+..++..++..|
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D   34 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD   34 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence            35899999999999999999999987766543

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.37  E-value=9.6e-05  Score=61.33  Aligned_cols=34  Identities=21%  Similarity=0.358  Sum_probs=28.7

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      ..+..|+|.|++||||||+++.|+..++..++..
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~   40 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST   40 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence            3567899999999999999999999887665543

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.37  E-value=0.00014  Score=61.18  Aligned_cols=28  Identities=25%  Similarity=0.279  Sum_probs=23.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQANFI   50 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~~i   50 (299)
                      ..++|.|++||||||+++.|++ ++..++
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-lg~~~i   30 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-LGVPLV   30 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-TTCCEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-CCCccc
Confidence            3689999999999999999998 554443

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.36  E-value=0.00012  Score=62.34  Aligned_cols=30  Identities=33%  Similarity=0.506  Sum_probs=25.6

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFI   50 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i   50 (299)
                      +..++|.|++||||||+++.|++.++..++
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~   34 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLL   34 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence            457999999999999999999998875443

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.36  E-value=0.00012  Score=61.39  Aligned_cols=33  Identities=36%  Similarity=0.492  Sum_probs=28.1

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      .+..|+|.|++||||||+++.|+..++..++..
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~   51 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST   51 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence            456799999999999999999999988665544

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.36  E-value=0.0001  Score=62.14  Aligned_cols=34  Identities=24%  Similarity=0.207  Sum_probs=28.0

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhh-cCCee
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANEC-QANFI   50 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l-~~~~i   50 (299)
                      .+.++..++|.|++||||||+++.|++.+ +..++
T Consensus        17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i   51 (207)
T 2qt1_A           17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVI   51 (207)
T ss_dssp             CSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence            35677899999999999999999999976 44333

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.35  E-value=0.0001  Score=62.04  Aligned_cols=34  Identities=35%  Similarity=0.625  Sum_probs=26.8

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhc-CCeecccch
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQ-ANFISVKGP   55 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~-~~~i~i~~~   55 (299)
                      ++.++|+||||||||||++.|++.+. .+ +.+++.
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~~~G-i~~~g~   35 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLKSSG-VPVDGF   35 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHHHTT-CCCEEE
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcccCC-EEEcCE
Confidence            45789999999999999999999763 33 555443

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.34  E-value=1.3e-05  Score=78.14  Aligned_cols=48  Identities=19%  Similarity=0.139  Sum_probs=39.7

Q ss_pred             CCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        207 VNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       207 Vsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      +-|+|+.|++++++.+.+.+.+  +-.+++.      +...+|||||||||||+|.
T Consensus        78 ~l~~di~G~~~vk~~i~~~~~l--~~~~~~~------~g~~vll~Gp~GtGKTtla  125 (543)
T 3m6a_A           78 LLDEEHHGLEKVKERILEYLAV--QKLTKSL------KGPILCLAGPPGVGKTSLA  125 (543)
T ss_dssp             THHHHCSSCHHHHHHHHHHHHH--HHHSSSC------CSCEEEEESSSSSSHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHH--HHhcccC------CCCEEEEECCCCCCHHHHH
Confidence            5579999999999999998877  5545444      5668999999999999874

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.34  E-value=0.0001  Score=60.69  Aligned_cols=32  Identities=19%  Similarity=0.167  Sum_probs=26.2

Q ss_pred             cCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        15 sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      ++.+.++ ..+|+|||||||||++++|+..++.
T Consensus        21 ~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~   52 (182)
T 3kta_A           21 VIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG   52 (182)
T ss_dssp             EEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             EEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence            3445555 7899999999999999999997764

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.34  E-value=0.0001  Score=60.89  Aligned_cols=31  Identities=26%  Similarity=0.359  Sum_probs=26.7

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFIS   51 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~   51 (299)
                      +..|+|.|++||||||+++.|+..++..++.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~   33 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS   33 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence            5679999999999999999999988765543

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.34  E-value=3.3e-05  Score=70.65  Aligned_cols=42  Identities=29%  Similarity=0.430  Sum_probs=34.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGP   55 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~   55 (299)
                      .++.+.+++.++|.||+|||||||+++|++.+..  +.+.+++.
T Consensus       164 l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~  207 (330)
T 2pt7_A          164 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDT  207 (330)
T ss_dssp             HHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESS
T ss_pred             hhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCe
Confidence            4566788999999999999999999999998764  45555543

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.33  E-value=0.0001  Score=60.82  Aligned_cols=26  Identities=23%  Similarity=0.405  Sum_probs=24.0

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      +..|+|.|++||||||+++.|+..++
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46799999999999999999999887

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.33  E-value=0.00015  Score=62.35  Aligned_cols=41  Identities=20%  Similarity=0.395  Sum_probs=32.0

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhh
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL   58 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~   58 (299)
                      -.+..++.|+|+|||||||+|.++.|+..++...  |+..++.
T Consensus        24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdll   64 (217)
T 3umf_A           24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLL   64 (217)
T ss_dssp             CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHH
T ss_pred             hhccCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHH
Confidence            3456788999999999999999999999886544  4444443

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.33  E-value=0.00012  Score=59.43  Aligned_cols=33  Identities=18%  Similarity=0.322  Sum_probs=28.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVK   53 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~   53 (299)
                      -..++|.|++||||||+++.|+..++..++..|
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D   39 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTD   39 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence            357999999999999999999999988776543

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.32  E-value=0.00011  Score=71.39  Aligned_cols=43  Identities=26%  Similarity=0.314  Sum_probs=34.9

Q ss_pred             hcC-CCCCCcEEEEEcCCCChHHHHHHH--HHHhhc--CCeecccchh
Q psy13773         14 LKF-GMQPSRGVLFYGPPGCGKTLLAKA--IANECQ--ANFISVKGPE   56 (299)
Q Consensus        14 ~sl-~i~~~~~vLL~Gp~GsGKTtLlr~--La~~l~--~~~i~i~~~~   56 (299)
                      +++ ++.+++.++|+||||||||||+++  +++...  .+.+++++.+
T Consensus        31 i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~   78 (525)
T 1tf7_A           31 ISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE   78 (525)
T ss_dssp             HTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred             hcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence            567 789999999999999999999999  567553  5667777654

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=97.32  E-value=0.0001  Score=66.52  Aligned_cols=37  Identities=32%  Similarity=0.541  Sum_probs=32.2

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE   56 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~   56 (299)
                      .+..++++||+|+|||+++++++..++..++++++.+
T Consensus        47 ~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~   83 (324)
T 3u61_B           47 IPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD   83 (324)
T ss_dssp             CCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTT
T ss_pred             CCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccc
Confidence            3457888899999999999999999998888888765

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.32  E-value=0.00013  Score=66.93  Aligned_cols=35  Identities=26%  Similarity=0.428  Sum_probs=29.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh----cCCeecccchhh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPEL   57 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l----~~~~i~i~~~~l   57 (299)
                      .++|+||+|+||||++++++..+    +..+++++|...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~   84 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY   84 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence            89999999999999999999988    345677776543

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.31  E-value=0.00011  Score=67.57  Aligned_cols=32  Identities=31%  Similarity=0.360  Sum_probs=29.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      ..++++++..++|+||||||||||++.++...
T Consensus       124 L~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          124 LGGGIETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             HTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            35789999999999999999999999999976

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.30  E-value=0.0001  Score=60.18  Aligned_cols=27  Identities=26%  Similarity=0.360  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHH-hhcC
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIAN-ECQA   47 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~-~l~~   47 (299)
                      +..|+|.|+|||||||+++.|+. .++.
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~   29 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGF   29 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTE
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcCCc
Confidence            35789999999999999999998 4443

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.29  E-value=0.00013  Score=62.09  Aligned_cols=33  Identities=27%  Similarity=0.500  Sum_probs=27.9

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      ++..|+|.|++||||||+++.|+..++..++..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~   35 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT   35 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence            456799999999999999999999988655443

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.29  E-value=0.00014  Score=65.75  Aligned_cols=38  Identities=24%  Similarity=0.228  Sum_probs=30.8

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPEL   57 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l   57 (299)
                      +++.++|+||+||||||++++||+.+..  +.+.+.+.++
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~  140 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT  140 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecC
Confidence            5789999999999999999999997764  4455555554

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=97.29  E-value=2.5e-05  Score=69.32  Aligned_cols=21  Identities=10%  Similarity=-0.149  Sum_probs=18.8

Q ss_pred             CCCCcccccCCCCCCCeeeec
Q psy13773        243 SGGPNSAPANESGTGGILLMF  263 (299)
Q Consensus       243 ~k~s~~l~~g~~gtg~~ll~~  263 (299)
                      .|+.+++||||||||||++..
T Consensus       102 ~~~n~~~l~GppgtGKt~~a~  122 (267)
T 1u0j_A          102 GKRNTIWLFGPATTGKTNIAE  122 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHH
Confidence            778999999999999998753

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.29  E-value=1.7e-05  Score=72.14  Aligned_cols=52  Identities=13%  Similarity=-0.064  Sum_probs=39.4

Q ss_pred             HhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        201 RFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       201 ~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .+++| .+|+|+-|.+.+++.+.+.+..  .....       ..-+++|+|||||||||+|.
T Consensus        21 ~~~~p-~~~~~iiG~~~~~~~l~~~l~~--~~~~~-------~~~~~vll~G~~GtGKT~la   72 (338)
T 3pfi_A           21 TSLRP-SNFDGYIGQESIKKNLNVFIAA--AKKRN-------ECLDHILFSGPAGLGKTTLA   72 (338)
T ss_dssp             --CCC-CSGGGCCSCHHHHHHHHHHHHH--HHHTT-------SCCCCEEEECSTTSSHHHHH
T ss_pred             hccCC-CCHHHhCChHHHHHHHHHHHHH--HHhcC-------CCCCeEEEECcCCCCHHHHH
Confidence            45678 5899999999999999998876  32211       22346999999999999875

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.28  E-value=0.00011  Score=61.54  Aligned_cols=29  Identities=24%  Similarity=0.430  Sum_probs=24.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      .|+|.|++||||||+++.|++ ++..++..
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~   31 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA   31 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred             EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence            589999999999999999999 76555443

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.27  E-value=0.00017  Score=66.03  Aligned_cols=33  Identities=21%  Similarity=0.183  Sum_probs=29.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      +++.+..+..+.|+|+||+|||||+++|++.+.
T Consensus        48 i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~   80 (337)
T 2qm8_A           48 VLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT   80 (337)
T ss_dssp             HGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence            456678899999999999999999999998664

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.27  E-value=0.00018  Score=60.97  Aligned_cols=32  Identities=16%  Similarity=0.401  Sum_probs=25.8

Q ss_pred             cCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        15 sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      ++....++.++|+||+|+|||||+++|++...
T Consensus        13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            34445788999999999999999999998764

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.26  E-value=0.00013  Score=58.85  Aligned_cols=30  Identities=37%  Similarity=0.566  Sum_probs=24.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      ..|+|.|++||||||+++.| ..++..++.+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~   31 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAKVIVM   31 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence            36889999999999999999 7776665543

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.26  E-value=0.00014  Score=62.39  Aligned_cols=34  Identities=21%  Similarity=0.366  Sum_probs=27.4

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      ..+..|+|.|++||||||+++.|+..++..++..
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~   38 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS   38 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence            3457899999999999999999999887655543

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.25  E-value=0.00011  Score=69.41  Aligned_cols=32  Identities=22%  Similarity=0.351  Sum_probs=28.2

Q ss_pred             hhcCCCCCCcE--EEEEcCCCChHHHHHHHHHHh
Q psy13773         13 FLKFGMQPSRG--VLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        13 ~~sl~i~~~~~--vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -+++.+.+|..  ++|+||||+|||||+++|++.
T Consensus        32 ~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           32 LVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             HHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             CCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            35678899999  999999999999999999986

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.25  E-value=3.8e-05  Score=64.28  Aligned_cols=47  Identities=15%  Similarity=0.028  Sum_probs=35.1

Q ss_pred             HhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        201 RFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       201 ~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      ++++| ..|+++-|-++..+.+.+.+.-  .            +.+.+++|||||||||.|.
T Consensus         9 ~~~~p-~~~~~~~g~~~~~~~l~~~l~~--~------------~~~~~ll~G~~G~GKT~l~   55 (226)
T 2chg_A            9 EKYRP-RTLDEVVGQDEVIQRLKGYVER--K------------NIPHLLFSGPPGTGKTATA   55 (226)
T ss_dssp             HHTSC-SSGGGCCSCHHHHHHHHHHHHT--T------------CCCCEEEECSTTSSHHHHH
T ss_pred             HhcCC-CCHHHHcCcHHHHHHHHHHHhC--C------------CCCeEEEECCCCCCHHHHH
Confidence            34555 6677777888888888887754  1            2345999999999999874

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.25  E-value=0.00017  Score=59.38  Aligned_cols=33  Identities=24%  Similarity=0.322  Sum_probs=27.4

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      .+..|+|.|++||||||+++.|+..++..++..
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~   37 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA   37 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence            346799999999999999999999887555443

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.25  E-value=0.00014  Score=60.41  Aligned_cols=32  Identities=19%  Similarity=0.377  Sum_probs=27.4

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFIS   51 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~   51 (299)
                      .+..|+|.|++||||||+++.|+..++..++.
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~   42 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLS   42 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence            45689999999999999999999998755443

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.25  E-value=2e-05  Score=71.70  Aligned_cols=47  Identities=15%  Similarity=0.085  Sum_probs=37.1

Q ss_pred             HhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        201 RFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       201 ~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .+++| .+|+||-|.+++++.+...+.-+              +-+.+|||||||||||+|.
T Consensus        29 ~k~~p-~~~~~i~g~~~~~~~l~~~l~~~--------------~~~~~ll~G~~G~GKT~la   75 (353)
T 1sxj_D           29 EKYRP-KNLDEVTAQDHAVTVLKKTLKSA--------------NLPHMLFYGPPGTGKTSTI   75 (353)
T ss_dssp             HHTCC-SSTTTCCSCCTTHHHHHHHTTCT--------------TCCCEEEECSTTSSHHHHH
T ss_pred             HhcCC-CCHHHhhCCHHHHHHHHHHHhcC--------------CCCEEEEECCCCCCHHHHH
Confidence            45677 67899999999999998887651              1235999999999999874

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=97.23  E-value=3.1e-05  Score=66.03  Aligned_cols=21  Identities=10%  Similarity=0.006  Sum_probs=18.5

Q ss_pred             CCCCCCcccccCCCCCCCeee
Q psy13773        241 SQSGGPNSAPANESGTGGILL  261 (299)
Q Consensus       241 ~~~k~s~~l~~g~~gtg~~ll  261 (299)
                      ++.|+.++|+|||||||||.+
T Consensus        54 ~iPkkn~ili~GPPGtGKTt~   74 (212)
T 1tue_A           54 GTPKKNCLVFCGPANTGKSYF   74 (212)
T ss_dssp             TCTTCSEEEEESCGGGCHHHH
T ss_pred             cCCcccEEEEECCCCCCHHHH
Confidence            467889999999999999954

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.22  E-value=0.00021  Score=64.55  Aligned_cols=28  Identities=14%  Similarity=0.128  Sum_probs=26.0

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      ..+..++|.||+|||||||+++|++.+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            6788999999999999999999999865

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.22  E-value=0.00014  Score=59.04  Aligned_cols=31  Identities=23%  Similarity=0.562  Sum_probs=26.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      ..|+|.|++||||||+++.|+..++..++..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~   33 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGYEFVDT   33 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence            3589999999999999999999988665543

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.22  E-value=1.1e-05  Score=74.09  Aligned_cols=52  Identities=12%  Similarity=0.031  Sum_probs=36.1

Q ss_pred             hccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        202 FARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       202 ~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .++|..+|+++-|.+..++.+...+.+   ++.      +.....++|||||||||||+|.
T Consensus        36 ~~~p~~~~~~ivG~~~~~~~l~~l~~~---~~~------~~~~~~~vLl~GppGtGKT~la   87 (368)
T 3uk6_A           36 ALEPRQASQGMVGQLAARRAAGVVLEM---IRE------GKIAGRAVLIAGQPGTGKTAIA   87 (368)
T ss_dssp             TSCBCSEETTEESCHHHHHHHHHHHHH---HHT------TCCTTCEEEEEESTTSSHHHHH
T ss_pred             ccCcCcchhhccChHHHHHHHHHHHHH---HHc------CCCCCCEEEEECCCCCCHHHHH
Confidence            456777799998888888775444433   111      1111258999999999999875

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.22  E-value=0.00015  Score=61.91  Aligned_cols=32  Identities=28%  Similarity=0.368  Sum_probs=27.0

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFIS   51 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~   51 (299)
                      .+..|+|.|++||||||+++.|+..++..++.
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~   35 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS   35 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence            45679999999999999999999998864443

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.21  E-value=0.00016  Score=59.36  Aligned_cols=31  Identities=29%  Similarity=0.439  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFI   50 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i   50 (299)
                      .+..|+|.|++||||||+++.|+..++..++
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i   34 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV   34 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence            3567999999999999999999999887665

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.21  E-value=7.9e-05  Score=77.06  Aligned_cols=37  Identities=24%  Similarity=0.372  Sum_probs=32.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFI   50 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i   50 (299)
                      ++|.+.+++.++|+||||||||||+|+|++.+.+...
T Consensus       692 VSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG  728 (986)
T 2iw3_A          692 INFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG  728 (986)
T ss_dssp             EEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEE
T ss_pred             cEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            5677899999999999999999999999998765443

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.20  E-value=0.0002  Score=60.35  Aligned_cols=30  Identities=30%  Similarity=0.453  Sum_probs=26.1

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      ...++..++|+|||||||||+++.|+..+.
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            346788999999999999999999999774

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.20  E-value=0.0002  Score=64.68  Aligned_cols=37  Identities=30%  Similarity=0.520  Sum_probs=28.9

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhc----CCeecccchhh
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQ----ANFISVKGPEL   57 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~----~~~i~i~~~~l   57 (299)
                      +..++|+||+|+|||+|+++|+..+.    ..++++.+.++
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l  192 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSF  192 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHH
Confidence            67999999999999999999999765    34445554433

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=97.20  E-value=3.7e-05  Score=68.73  Aligned_cols=46  Identities=15%  Similarity=0.021  Sum_probs=35.5

Q ss_pred             hccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        202 FARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       202 ~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      +++| .+|+|+-|.+++++.+.+.+..              .+.+.+|||||||||||.+.
T Consensus        10 k~~p-~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKt~la   55 (319)
T 2chq_A           10 KYRP-RTLDEVVGQDEVIQRLKGYVER--------------KNIPHLLFSGPPGTGKTATA   55 (319)
T ss_dssp             TTSC-SSGGGSCSCHHHHHHHHTTTTT--------------TCCCCEEEESSSSSSHHHHH
T ss_pred             hcCC-CCHHHHhCCHHHHHHHHHHHhC--------------CCCCeEEEECcCCcCHHHHH
Confidence            4566 6788888988888888877543              23345999999999999764

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=97.19  E-value=0.00018  Score=64.79  Aligned_cols=40  Identities=25%  Similarity=0.395  Sum_probs=33.1

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhh---cCCeecccchhhh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL   58 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~~~~l~   58 (299)
                      ..+..++|+|++|||||+++++|+...   +..++.++|..+.
T Consensus        23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~   65 (304)
T 1ojl_A           23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALN   65 (304)
T ss_dssp             STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCC
T ss_pred             CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCC
Confidence            346689999999999999999999965   3568888887653

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.19  E-value=0.00022  Score=59.71  Aligned_cols=34  Identities=18%  Similarity=0.343  Sum_probs=27.9

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      ..+..|+|.|++||||||+++.|+..++..++..
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~   46 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA   46 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence            3456799999999999999999999887655443

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.19  E-value=0.00026  Score=59.55  Aligned_cols=30  Identities=20%  Similarity=0.143  Sum_probs=26.5

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      ....+..++|.|++||||||++++|++.+.
T Consensus        18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~   47 (201)
T 1rz3_A           18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR   47 (201)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            456788999999999999999999999763

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.19  E-value=0.00021  Score=59.68  Aligned_cols=24  Identities=50%  Similarity=0.773  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      ..++|+||+|+|||+++++++..+
T Consensus        39 ~~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           39 PHLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            359999999999999999999876

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.18  E-value=5.6e-05  Score=67.81  Aligned_cols=22  Identities=9%  Similarity=-0.136  Sum_probs=18.4

Q ss_pred             CCCCCCcccccCCCCCCCeeee
Q psy13773        241 SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       241 ~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      +.+...|+|||||||||||+|-
T Consensus        32 ~~~~p~~lLl~GppGtGKT~la   53 (293)
T 3t15_A           32 NIKVPLILGIWGGKGQGKSFQC   53 (293)
T ss_dssp             TCCCCSEEEEEECTTSCHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHH
Confidence            4555679999999999999874

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.18  E-value=0.00018  Score=63.81  Aligned_cols=25  Identities=20%  Similarity=0.420  Sum_probs=22.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      .++|+||||+|||||+++|++...+
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~   28 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVS   28 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            5889999999999999999997654

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.17  E-value=0.00015  Score=66.80  Aligned_cols=35  Identities=20%  Similarity=0.491  Sum_probs=28.5

Q ss_pred             CCCCCcE--EEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773         17 GMQPSRG--VLFYGPPGCGKTLLAKAIANECQANFIS   51 (299)
Q Consensus        17 ~i~~~~~--vLL~Gp~GsGKTtLlr~La~~l~~~~i~   51 (299)
                      .+..+..  ++|+|++||||||++++||..++..++.
T Consensus        18 ~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~   54 (359)
T 2ga8_A           18 RIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHT   54 (359)
T ss_dssp             TTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred             HhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence            3445544  9999999999999999999998876644

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.16  E-value=0.00023  Score=57.59  Aligned_cols=30  Identities=17%  Similarity=0.281  Sum_probs=26.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      .|+|.|++||||||+++.|+..++..++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~   31 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV   31 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence            488999999999999999999988666543

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.16  E-value=0.00018  Score=65.65  Aligned_cols=39  Identities=21%  Similarity=0.262  Sum_probs=31.4

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPEL   57 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l   57 (299)
                      .++..++|+|||||||||+++.||+.+..  +.+.+.+.++
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~  167 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDT  167 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecc
Confidence            57899999999999999999999997653  3455555554

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.16  E-value=0.00022  Score=62.01  Aligned_cols=34  Identities=24%  Similarity=0.419  Sum_probs=28.4

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      .++..|+|.||+||||||+++.|+..++...+..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~   60 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST   60 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence            4677899999999999999999999886554433

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.16  E-value=0.00029  Score=59.62  Aligned_cols=41  Identities=17%  Similarity=0.253  Sum_probs=32.6

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhhc----CCeecccchhh
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQ----ANFISVKGPEL   57 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~----~~~i~i~~~~l   57 (299)
                      .+.++..++|.|++||||||+++.|+..++    ...+.+++..+
T Consensus        21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~   65 (211)
T 1m7g_A           21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI   65 (211)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence            356788999999999999999999999775    23666665444

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.15  E-value=0.00023  Score=60.26  Aligned_cols=30  Identities=30%  Similarity=0.514  Sum_probs=25.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      .|+|.|++||||||+++.|+..++...+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~   31 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST   31 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence            478999999999999999999887665544

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.14  E-value=0.00021  Score=60.51  Aligned_cols=30  Identities=27%  Similarity=0.454  Sum_probs=25.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      .|+|.|++||||||+++.|+..++...+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~   31 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST   31 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence            478999999999999999999887665544

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.14  E-value=0.00029  Score=71.26  Aligned_cols=40  Identities=33%  Similarity=0.561  Sum_probs=34.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh---cCCeecccchhhhhccc
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWF   62 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~~~~l~~~~~   62 (299)
                      .++|+||+|||||+++++|+..+   +..++.++|.++...+.
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~  565 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHS  565 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccc
Confidence            69999999999999999999987   46789999988876543

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.14  E-value=0.00011  Score=71.22  Aligned_cols=40  Identities=20%  Similarity=0.256  Sum_probs=31.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceeccc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVK   53 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~   53 (299)
                      .++.+..+..++|.||+||||||++++|++.+..  +.+.+.
T Consensus       253 l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitie  294 (511)
T 2oap_1          253 LWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIE  294 (511)
T ss_dssp             HHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred             HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEc
Confidence            3445678889999999999999999999998764  344443

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.12  E-value=0.00025  Score=71.65  Aligned_cols=38  Identities=24%  Similarity=0.439  Sum_probs=34.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT   59 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~   59 (299)
                      ..++|+||+|||||+++++++..++..++.++|.++..
T Consensus       489 ~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~  526 (758)
T 1r6b_X          489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYME  526 (758)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSS
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcc
Confidence            37999999999999999999999998899999887754

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.12  E-value=0.00023  Score=59.79  Aligned_cols=31  Identities=19%  Similarity=0.257  Sum_probs=26.7

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcCCe
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQANF   49 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~   49 (299)
                      ..+..|+|.|++||||||+++.|+..++...
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~   38 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNN   38 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence            4577899999999999999999999876543

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.11  E-value=0.0001  Score=69.44  Aligned_cols=24  Identities=21%  Similarity=0.336  Sum_probs=22.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      .++|+||||+|||||+|+|++...
T Consensus        71 ~valvG~nGaGKSTLln~L~Gl~~   94 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLRGIGN   94 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            999999999999999999999654

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.11  E-value=0.00039  Score=63.24  Aligned_cols=38  Identities=21%  Similarity=0.082  Sum_probs=30.1

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVK   53 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~   53 (299)
                      .++.++..++|+||||||||+|+..++...+....+++
T Consensus       118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs  155 (331)
T 2vhj_A          118 GHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYAT  155 (331)
T ss_dssp             TEEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEE
T ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEE
Confidence            46777888999999999999999999987544434444

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=97.11  E-value=4.5e-05  Score=68.38  Aligned_cols=47  Identities=19%  Similarity=0.082  Sum_probs=36.6

Q ss_pred             HhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        201 RFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       201 ~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      ++++| .+|+|+-|.+++++.+...+.-              .+-+.+|+|||||||||.+.
T Consensus        17 ~k~~p-~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKT~la   63 (327)
T 1iqp_A           17 EKYRP-QRLDDIVGQEHIVKRLKHYVKT--------------GSMPHLLFAGPPGVGKTTAA   63 (327)
T ss_dssp             HHTCC-CSTTTCCSCHHHHHHHHHHHHH--------------TCCCEEEEESCTTSSHHHHH
T ss_pred             hccCC-CCHHHhhCCHHHHHHHHHHHHc--------------CCCCeEEEECcCCCCHHHHH
Confidence            34667 6788888888899988877654              12346999999999999874

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.10  E-value=0.00034  Score=58.40  Aligned_cols=32  Identities=19%  Similarity=0.156  Sum_probs=26.6

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhh-cCCeec
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANEC-QANFIS   51 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l-~~~~i~   51 (299)
                      .+..|.|.|++||||||+++.|+..+ +..++.
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~   35 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKY   35 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEE
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEE
Confidence            46789999999999999999999987 344443

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.10  E-value=0.00025  Score=62.83  Aligned_cols=31  Identities=26%  Similarity=0.370  Sum_probs=27.9

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      ++.+++.++|+||||||||||++.++..+..
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~   56 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG   56 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            6889999999999999999999999986543

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.09  E-value=0.00015  Score=66.72  Aligned_cols=62  Identities=16%  Similarity=0.120  Sum_probs=38.5

Q ss_pred             ccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCC---CCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        191 ITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFR---FPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       191 it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk---~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .+++++.+.|.+.        |-|.+.+++.+...+..  ..+   .+......-....++|||||||||||++-
T Consensus         4 ~~~~~l~~~l~~~--------i~G~~~~~~~l~~~i~~--~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la   68 (363)
T 3hws_A            4 PTPHEIRNHLDDY--------VIGQEQAKKVLAVAVYN--HYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLA   68 (363)
T ss_dssp             CCHHHHHHHHHHH--------CCSCHHHHHHHHHHHHH--HHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHH
T ss_pred             CCHHHHHHHHHhh--------ccCHHHHHHHHHHHHHH--HHhhhccccccccccCCCCeEEEECCCCCCHHHHH
Confidence            4566777777543        45677788887777632  111   11111122234678999999999999873

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.08  E-value=0.00041  Score=60.93  Aligned_cols=38  Identities=21%  Similarity=0.344  Sum_probs=29.1

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHh---hcCCeecccchhh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANE---CQANFISVKGPEL   57 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~---l~~~~i~i~~~~l   57 (299)
                      .+..|+|.|++||||||+++.|+..   .+..++.++...+
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~   43 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI   43 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence            3567999999999999999999997   4555554454444

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.08  E-value=0.00025  Score=60.43  Aligned_cols=32  Identities=25%  Similarity=0.452  Sum_probs=27.2

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      +..|+|.|++||||||+++.|+..++..++..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~   36 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST   36 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence            45789999999999999999999987665544

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.07  E-value=0.00031  Score=60.45  Aligned_cols=33  Identities=24%  Similarity=0.431  Sum_probs=27.7

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      .+..|+|.|++||||||+++.|+..++..++..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~   47 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT   47 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence            456799999999999999999999988655443

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.06  E-value=0.00041  Score=57.34  Aligned_cols=29  Identities=34%  Similarity=0.474  Sum_probs=26.1

Q ss_pred             CCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         18 MQPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      ..++..++|.|++||||||+++.|+..+.
T Consensus        10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~   38 (186)
T 2yvu_A           10 IEKGIVVWLTGLPGSGKTTIATRLADLLQ   38 (186)
T ss_dssp             CSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            35678899999999999999999999875

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.06  E-value=0.00035  Score=58.16  Aligned_cols=30  Identities=17%  Similarity=0.116  Sum_probs=25.1

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFI   50 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i   50 (299)
                      .+..|+|.|++||||||+++.|+.. +..++
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~i   36 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVL   36 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT-TCCEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC-CCEEE
Confidence            4567999999999999999999998 54443

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.04  E-value=0.00018  Score=59.52  Aligned_cols=36  Identities=14%  Similarity=0.079  Sum_probs=26.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhcC-----Ceecccchhh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQA-----NFISVKGPEL   57 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~~-----~~i~i~~~~l   57 (299)
                      +.+.|+|++|||||||++.|++.+..     +.+.+++.++
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i   43 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGD   43 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-----
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCccc
Confidence            57899999999999999999997753     4566666554

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.04  E-value=0.00037  Score=58.74  Aligned_cols=26  Identities=35%  Similarity=0.556  Sum_probs=23.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      ..++|+||+|+||||+++.++..+..
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~~~   71 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGLNC   71 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            47999999999999999999997753

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.03  E-value=0.0003  Score=59.12  Aligned_cols=29  Identities=14%  Similarity=0.208  Sum_probs=25.6

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      ..+..|+|.|++||||||+++.|+..++.
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~   35 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALCA   35 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            45778999999999999999999998764

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.02  E-value=0.00039  Score=63.32  Aligned_cols=27  Identities=11%  Similarity=0.078  Sum_probs=24.2

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      .+..++|.||+||||||++++|++.+.
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            455899999999999999999999875

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.02  E-value=0.00041  Score=60.30  Aligned_cols=30  Identities=30%  Similarity=0.460  Sum_probs=25.5

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCe
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANF   49 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~   49 (299)
                      .+..+.|.||+||||||+++.|+..++..+
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~   37 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALGARY   37 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence            356899999999999999999999887544

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.01  E-value=0.00042  Score=58.02  Aligned_cols=27  Identities=22%  Similarity=0.234  Sum_probs=24.6

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      +..|+|.|++||||||+++.|+..++.
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            567999999999999999999998775

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.01  E-value=0.001  Score=68.58  Aligned_cols=70  Identities=11%  Similarity=0.129  Sum_probs=45.5

Q ss_pred             HHHhhhcccCCHHH--HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccH
Q psy13773        116 RELQELVQDVDLNY--IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITR  193 (299)
Q Consensus       116 ~R~~~l~~~v~l~~--LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~  193 (299)
                      .|...++.++++..  +.+....||||+.|++..+.++..                  .+.-...+..+|+...+++.+.
T Consensus       783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~------------------~p~~p~LLILDEPTsGLD~~~~  844 (916)
T 3pih_A          783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRK------------------RDTGRTLYILDEPTVGLHFEDV  844 (916)
T ss_dssp             HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTS------------------CCCSSEEEEEESTTTTCCHHHH
T ss_pred             HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhh------------------CCCCCCEEEEECCCCCCCHHHH
Confidence            45556777788754  345667899999999887654321                  0100123446677777777777


Q ss_pred             HHHHHHHHhc
Q psy13773        194 AHFEEAMRFA  203 (299)
Q Consensus       194 ~Df~~AL~~~  203 (299)
                      +.+.++|++.
T Consensus       845 ~~L~~lL~~L  854 (916)
T 3pih_A          845 RKLVEVLHRL  854 (916)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7888887765

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.01  E-value=0.00042  Score=57.66  Aligned_cols=28  Identities=18%  Similarity=0.450  Sum_probs=24.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANFI   50 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i   50 (299)
                      .|+|.|++||||||+++.|+..++..++
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~   29 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLGYEIF   29 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred             EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence            5889999999999999999999886544

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.99  E-value=0.00041  Score=65.43  Aligned_cols=29  Identities=31%  Similarity=0.419  Sum_probs=25.9

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      .++..++|.||+||||||++++|++.+..
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~~  193 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELNS  193 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence            56778999999999999999999998764

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.99  E-value=0.0004  Score=58.93  Aligned_cols=30  Identities=33%  Similarity=0.337  Sum_probs=24.8

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFI   50 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i   50 (299)
                      .+..|+|.|++||||||+++.|+. ++..++
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~i   32 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-LGINVI   32 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-TTCEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-cCCEEE
Confidence            356799999999999999999998 654443

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.98  E-value=0.00027  Score=64.36  Aligned_cols=23  Identities=57%  Similarity=0.921  Sum_probs=21.7

Q ss_pred             EEEEcCCCChHHHHHHHHHHhhc
Q psy13773         24 VLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        24 vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      ++|+||+||||||+++++|+.+.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHc
Confidence            99999999999999999999864

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.97  E-value=0.00038  Score=59.00  Aligned_cols=30  Identities=27%  Similarity=0.355  Sum_probs=25.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      .|+|.|++||||||+++.|+..++..++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~   31 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST   31 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence            478999999999999999999887655544

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.96  E-value=0.0004  Score=57.14  Aligned_cols=24  Identities=21%  Similarity=0.300  Sum_probs=22.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      .|+|.|++||||||+++.|+..++
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999876

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=96.96  E-value=0.00058  Score=60.43  Aligned_cols=27  Identities=33%  Similarity=0.561  Sum_probs=23.9

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      ++..+++|+||||||||+++++||...
T Consensus       102 ~~~n~~~l~GppgtGKt~~a~ala~~~  128 (267)
T 1u0j_A          102 GKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence            445689999999999999999999964

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.95  E-value=0.00047  Score=58.67  Aligned_cols=28  Identities=43%  Similarity=0.608  Sum_probs=24.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANFI   50 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i   50 (299)
                      .++|.|||||||+|.++.|+..++...+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i   29 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI   29 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence            4788999999999999999998875543

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.95  E-value=0.00037  Score=59.99  Aligned_cols=28  Identities=25%  Similarity=0.192  Sum_probs=25.5

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      ...++..+.|.|++||||||++++|++.
T Consensus        16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            4467889999999999999999999997

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=96.95  E-value=0.00023  Score=59.60  Aligned_cols=33  Identities=18%  Similarity=0.253  Sum_probs=28.3

Q ss_pred             hhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         13 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        13 ~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      +.++.+..+..++|+|++|+|||||+++|++..
T Consensus        18 l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A           18 IRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             GGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             HhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            344788899999999999999999999998754

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.95  E-value=0.00047  Score=59.44  Aligned_cols=32  Identities=25%  Similarity=0.443  Sum_probs=27.7

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFI   50 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i   50 (299)
                      ..+..+.|.|++||||||+++.|+..++..++
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~   45 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYL   45 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEE
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcCCcee
Confidence            56778999999999999999999998875443

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.94  E-value=0.00039  Score=67.84  Aligned_cols=42  Identities=26%  Similarity=0.351  Sum_probs=33.3

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhhcCC---ee-cccchhhh
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQAN---FI-SVKGPELL   58 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~---~i-~i~~~~l~   58 (299)
                      .+.++..+.|+|+||||||||+++|++.+...   .+ .+++.++.
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~  410 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR  410 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence            45688999999999999999999999988642   23 46766553

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.93  E-value=0.00055  Score=56.41  Aligned_cols=30  Identities=27%  Similarity=0.141  Sum_probs=25.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh---cCCeecc
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANEC---QANFISV   52 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i   52 (299)
                      .|+|.|++||||||+++.|+..+   +..++..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~   34 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY   34 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            47899999999999999999987   5555544

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.93  E-value=0.00053  Score=62.43  Aligned_cols=35  Identities=34%  Similarity=0.551  Sum_probs=29.4

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeecccch
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGP   55 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~   55 (299)
                      +..++|+||+||||||+++.||..++..++.+|..
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~   39 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA   39 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence            35799999999999999999999988766666543

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.92  E-value=0.00046  Score=70.81  Aligned_cols=38  Identities=37%  Similarity=0.594  Sum_probs=33.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhh---cCCeecccchhhhh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT   59 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~~~~l~~   59 (299)
                      ..++|+||+|||||+++++|+..+   +..++.++|..+..
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~  629 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME  629 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccc
Confidence            489999999999999999999988   56788999887643

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=96.91  E-value=4.5e-05  Score=68.59  Aligned_cols=51  Identities=14%  Similarity=-0.087  Sum_probs=35.7

Q ss_pred             hccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        202 FARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       202 ~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      +++| .+|+++-|.+..++.+.+.+..  .....       ....++|+|||||||||+|.
T Consensus         5 ~~~p-~~~~~~ig~~~~~~~l~~~l~~--~~~~~-------~~~~~vll~G~~GtGKT~la   55 (324)
T 1hqc_A            5 ALRP-KTLDEYIGQERLKQKLRVYLEA--AKARK-------EPLEHLLLFGPPGLGKTTLA   55 (324)
T ss_dssp             CCCC-CSTTTCCSCHHHHHHHHHHHHH--HHHHC-------SCCCCCEEECCTTCCCHHHH
T ss_pred             ccCc-ccHHHhhCHHHHHHHHHHHHHH--HHccC-------CCCCcEEEECCCCCCHHHHH
Confidence            3456 4677887888888888877765  21110       12357999999999999874

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.90  E-value=0.00054  Score=57.25  Aligned_cols=29  Identities=28%  Similarity=0.444  Sum_probs=25.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANFIS   51 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~   51 (299)
                      .++|.|++||||||+++.|+..++..++.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d   32 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYLS   32 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence            78999999999999999999998865543

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.89  E-value=6.6e-05  Score=61.27  Aligned_cols=41  Identities=12%  Similarity=0.003  Sum_probs=26.9

Q ss_pred             CHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        208 NDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       208 sw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      +|+++-|-++..+.+.+.+.-              ....++++|||||||||.|.
T Consensus        20 ~~~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKT~l~   60 (195)
T 1jbk_A           20 KLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIV   60 (195)
T ss_dssp             CSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEECCTTSCHHHHH
T ss_pred             cccccccchHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHH
Confidence            344444555555555555422              23467999999999999985

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.86  E-value=0.00061  Score=61.70  Aligned_cols=35  Identities=34%  Similarity=0.673  Sum_probs=27.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhc------CCeecccchh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQ------ANFISVKGPE   56 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~------~~~i~i~~~~   56 (299)
                      ..++|+||+|+||||+++++++.+.      ..++.+++.+
T Consensus        59 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~   99 (353)
T 1sxj_D           59 PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD   99 (353)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence            3499999999999999999999864      2455566554

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.86  E-value=0.00071  Score=63.43  Aligned_cols=28  Identities=21%  Similarity=0.287  Sum_probs=25.3

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHH
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      -++.++..++|+||||||||||++.++.
T Consensus       173 GGI~~Gei~~I~G~sGsGKTTLl~~la~  200 (400)
T 3lda_A          173 GGVETGSITELFGEFRTGKSQLCHTLAV  200 (400)
T ss_dssp             TSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence            3789999999999999999999997763

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.85  E-value=0.00015  Score=66.11  Aligned_cols=47  Identities=13%  Similarity=-0.005  Sum_probs=34.8

Q ss_pred             HhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        201 RFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       201 ~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .+++| -+|+++-|-+.+.+.+...+.-              .+-+.+|||||||||||.+.
T Consensus        17 ~k~rp-~~~~~~~g~~~~~~~L~~~i~~--------------g~~~~~ll~Gp~G~GKTtla   63 (340)
T 1sxj_C           17 EKYRP-ETLDEVYGQNEVITTVRKFVDE--------------GKLPHLLFYGPPGTGKTSTI   63 (340)
T ss_dssp             HHTCC-SSGGGCCSCHHHHHHHHHHHHT--------------TCCCCEEEECSSSSSHHHHH
T ss_pred             HHhCC-CcHHHhcCcHHHHHHHHHHHhc--------------CCCceEEEECCCCCCHHHHH
Confidence            35677 5677777778888888877754              12234899999999999764

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.85  E-value=0.00076  Score=57.75  Aligned_cols=39  Identities=28%  Similarity=0.338  Sum_probs=30.5

Q ss_pred             cCCCCCCcEEEEEcCCCChHHHHHHHHHHhh---cCCeeccc
Q psy13773         15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISVK   53 (299)
Q Consensus        15 sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~   53 (299)
                      ..++.++..++|+||||+|||||+..++...   +...++++
T Consensus        17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~   58 (247)
T 2dr3_A           17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA   58 (247)
T ss_dssp             TTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence            4578999999999999999999988777643   33455554

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=96.85  E-value=0.00022  Score=66.69  Aligned_cols=32  Identities=22%  Similarity=0.354  Sum_probs=27.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      +++.+.++ .++|+||||+|||||+++|+..++
T Consensus        54 v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~   85 (415)
T 4aby_A           54 LELELGGG-FCAFTGETGAGKSIIVDALGLLLG   85 (415)
T ss_dssp             EEEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred             EEEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence            35667788 999999999999999999988765

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.85  E-value=0.00048  Score=61.91  Aligned_cols=31  Identities=23%  Similarity=0.230  Sum_probs=26.3

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcCCe
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQANF   49 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~   49 (299)
                      ..++.+.|.||||+|||||+++|++...+..
T Consensus       167 l~geiv~l~G~sG~GKSTll~~l~g~~~~~~  197 (301)
T 1u0l_A          167 LKGKISTMAGLSGVGKSSLLNAINPGLKLRV  197 (301)
T ss_dssp             HSSSEEEEECSTTSSHHHHHHHHSTTCCCC-
T ss_pred             hcCCeEEEECCCCCcHHHHHHHhcccccccc
Confidence            4578999999999999999999999776543

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.82  E-value=0.00059  Score=57.39  Aligned_cols=32  Identities=22%  Similarity=0.323  Sum_probs=26.7

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      -..|+|.|++||||||+++.|+..++..++..
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~   43 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNV   43 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence            35789999999999999999999877655543

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.82  E-value=0.00062  Score=62.85  Aligned_cols=32  Identities=25%  Similarity=0.263  Sum_probs=26.5

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhc-CCeec
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQ-ANFIS   51 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~-~~~i~   51 (299)
                      .++.++|+||||+|||||+++|++... .....
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~  246 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTND  246 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-
T ss_pred             CCCEEEEECCCCccHHHHHHHHhccccccccCC
Confidence            578999999999999999999999766 44333

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.81  E-value=0.00061  Score=58.30  Aligned_cols=28  Identities=25%  Similarity=0.568  Sum_probs=24.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANFI   50 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i   50 (299)
                      .|+|.|++||||||+++.|+..++..++
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i   29 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYSLAHI   29 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence            4789999999999999999998875443

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.81  E-value=8.9e-05  Score=70.60  Aligned_cols=47  Identities=19%  Similarity=0.053  Sum_probs=35.2

Q ss_pred             HhccCCCCHHHHHHHHHHH---HHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        201 RFARRSVNDADIRKYEMFA---QTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       201 ~~~~PsVsw~DIggL~~vk---~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .+++| -+++|+-|.+.+.   +.+...+.-+              +-+++|||||||||||+|.
T Consensus        18 ~r~rP-~~l~~ivGq~~~~~~~~~L~~~i~~~--------------~~~~vLL~GppGtGKTtlA   67 (447)
T 3pvs_A           18 ARMRP-ENLAQYIGQQHLLAAGKPLPRAIEAG--------------HLHSMILWGPPGTGKTTLA   67 (447)
T ss_dssp             HHTCC-CSTTTCCSCHHHHSTTSHHHHHHHHT--------------CCCEEEEECSTTSSHHHHH
T ss_pred             HHhCC-CCHHHhCCcHHHHhchHHHHHHHHcC--------------CCcEEEEECCCCCcHHHHH
Confidence            45677 6777777777777   6677776651              2268999999999999874

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.80  E-value=0.00021  Score=64.73  Aligned_cols=32  Identities=28%  Similarity=0.376  Sum_probs=24.7

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhhcCC
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQAN   48 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~   48 (299)
                      .+.+++.++|+||||+|||||+++|++.....
T Consensus       169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~  200 (307)
T 1t9h_A          169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLR  200 (307)
T ss_dssp             GGGTTSEEEEEESHHHHHHHHHHHHCC-----
T ss_pred             hhcCCCEEEEECCCCCCHHHHHHHhccccccc
Confidence            34578999999999999999999999876543

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.80  E-value=0.00087  Score=60.54  Aligned_cols=31  Identities=23%  Similarity=0.258  Sum_probs=27.0

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      +...+++.++|+|++|+||||+++.||..+.
T Consensus        99 ~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~  129 (306)
T 1vma_A           99 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV  129 (306)
T ss_dssp             CCSSSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ccCCCCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence            3456788999999999999999999999764

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=96.79  E-value=0.00043  Score=61.63  Aligned_cols=34  Identities=44%  Similarity=0.732  Sum_probs=27.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc-----CCeecccchh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPE   56 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~-----~~~i~i~~~~   56 (299)
                      .++|+||+|+|||+++++++..+.     ..++.+++.+
T Consensus        40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~   78 (319)
T 2chq_A           40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD   78 (319)
T ss_dssp             CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTS
T ss_pred             eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcc
Confidence            499999999999999999999862     2355666554

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.79  E-value=0.00087  Score=57.81  Aligned_cols=30  Identities=27%  Similarity=0.335  Sum_probs=26.7

Q ss_pred             CCCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         18 MQPSRGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      +..+..|.|.|++||||||+++.|+..+..
T Consensus        23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~   52 (229)
T 4eaq_A           23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK   52 (229)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            347889999999999999999999998864

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.78  E-value=7.5e-05  Score=69.07  Aligned_cols=62  Identities=10%  Similarity=0.048  Sum_probs=39.2

Q ss_pred             ccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCC------------------CCCCCCCCCcccccC
Q psy13773        191 ITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSN------------------PNQSQSGGPNSAPAN  252 (299)
Q Consensus       191 it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~------------------~~~~~~k~s~~l~~g  252 (299)
                      .+.+++.+.|.+        +|-|.+++|+.+...+.+  +++....                  +...-+...++||||
T Consensus        10 ~~~~~l~~~L~~--------~viGq~~ak~~l~~~~~~--~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~G   79 (376)
T 1um8_A           10 PAPKELKAVLDN--------YVIGQEQAKKVFSVAVYN--HYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIG   79 (376)
T ss_dssp             CCHHHHHHHHHT--------TCCSCHHHHHHHHHHHHH--HHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEEC
T ss_pred             CCHHHHHHHHhh--------HccCcHHHHHHHHHHHHH--HHHHHHhhhhhhhccccccccccccccccccCCCCEEEEC
Confidence            456777777764        344778888888877643  2222211                  011123456899999


Q ss_pred             CCCCCCeeee
Q psy13773        253 ESGTGGILLM  262 (299)
Q Consensus       253 ~~gtg~~ll~  262 (299)
                      |||||||+|.
T Consensus        80 p~GtGKT~la   89 (376)
T 1um8_A           80 PTGSGKTLMA   89 (376)
T ss_dssp             CTTSSHHHHH
T ss_pred             CCCCCHHHHH
Confidence            9999999873

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=96.78  E-value=0.00077  Score=62.21  Aligned_cols=52  Identities=23%  Similarity=0.207  Sum_probs=38.0

Q ss_pred             ccCcChhhhhcC---CCCCCcEEEEEcCCCChHHHHHHHHHHhhc---CCeecccchh
Q psy13773          5 YPVEHPEKFLKF---GMQPSRGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPE   56 (299)
Q Consensus         5 ~pl~~p~~~~sl---~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~---~~~i~i~~~~   56 (299)
                      +|.-.+++-.-+   ++.++..++|+||||||||||+.+++..+.   ...++++...
T Consensus        42 i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~   99 (356)
T 3hr8_A           42 IPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH   99 (356)
T ss_dssp             ECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence            344455554434   588999999999999999999999998653   3455666443

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.77  E-value=0.00022  Score=64.82  Aligned_cols=20  Identities=15%  Similarity=-0.002  Sum_probs=17.0

Q ss_pred             CCCCcccccCCCCCCCeeee
Q psy13773        243 SGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       243 ~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .+.+++++|||||||||++.
T Consensus        43 ~~~~~lli~GpPGTGKT~~v   62 (318)
T 3te6_A           43 SQNKLFYITNADDSTKFQLV   62 (318)
T ss_dssp             TCCCEEEEECCCSHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHH
Confidence            45678999999999999864

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=96.77  E-value=7.3e-05  Score=64.78  Aligned_cols=41  Identities=15%  Similarity=0.236  Sum_probs=26.9

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhh
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPEL   57 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l   57 (299)
                      +.+.. ..++|+||||||||||+++|++.+.+  +.+.+++.++
T Consensus        23 ~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~   65 (227)
T 1qhl_A           23 FDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE   65 (227)
T ss_dssp             ECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred             EEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence            44443 56789999999999999999998764  3455555544

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.76  E-value=0.00041  Score=68.43  Aligned_cols=32  Identities=34%  Similarity=0.567  Sum_probs=27.7

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      +.+..+..++|+||||||||||+++|++.+..
T Consensus        55 ~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~   86 (604)
T 3k1j_A           55 TAANQKRHVLLIGEPGTGKSMLGQAMAELLPT   86 (604)
T ss_dssp             HHHHTTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred             ccccCCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence            34567789999999999999999999998754

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.76  E-value=0.00049  Score=62.40  Aligned_cols=37  Identities=32%  Similarity=0.312  Sum_probs=28.9

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhh----------cCCeecccchhh
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPEL   57 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l----------~~~~i~i~~~~l   57 (299)
                      -..++|.|++|+|||||++.|.+..          ..+.+.|++..+
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l   50 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLI   50 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEE
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHH
Confidence            3578999999999999999999865          345566666554

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.76  E-value=0.00092  Score=58.21  Aligned_cols=30  Identities=17%  Similarity=0.088  Sum_probs=25.7

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcCC
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQAN   48 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~   48 (299)
                      ..+..|+|.|++||||||+++.|+..++..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~   49 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQN   49 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence            345679999999999999999999988754

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.76  E-value=0.00084  Score=60.40  Aligned_cols=30  Identities=17%  Similarity=0.256  Sum_probs=25.6

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcCCe
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQANF   49 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~   49 (299)
                      ..+..++|.||||+|||||+++|+ ...+..
T Consensus       163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~  192 (302)
T 2yv5_A          163 LEGFICILAGPSGVGKSSILSRLT-GEELRT  192 (302)
T ss_dssp             TTTCEEEEECSTTSSHHHHHHHHH-SCCCCC
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHH-HhhCcc
Confidence            457899999999999999999999 766443

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=96.76  E-value=0.00061  Score=65.71  Aligned_cols=27  Identities=33%  Similarity=0.667  Sum_probs=24.4

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      .+..++|+||||||||+++++|+..++
T Consensus        40 ~~~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           40 SGESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             HTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             cCCeeEeecCchHHHHHHHHHHHHHHh
Confidence            456899999999999999999999874

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.76  E-value=0.00097  Score=62.72  Aligned_cols=33  Identities=18%  Similarity=0.224  Sum_probs=27.5

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFIS   51 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~   51 (299)
                      ..+..|+|+|+|||||||+++.|+..++..++.
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~  288 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN  288 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence            456789999999999999999999987654443

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.76  E-value=0.00066  Score=61.70  Aligned_cols=23  Identities=35%  Similarity=0.625  Sum_probs=21.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      .++|+||+|+||||+++++++.+
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            39999999999999999999954

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.75  E-value=0.00079  Score=61.60  Aligned_cols=34  Identities=21%  Similarity=0.356  Sum_probs=28.3

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeecccc
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKG   54 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~   54 (299)
                      +..|+|+||+|||||+|+..||..++..+|..|.
T Consensus        40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds   73 (339)
T 3a8t_A           40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDK   73 (339)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence            4579999999999999999999998865555443

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.74  E-value=0.0012  Score=60.50  Aligned_cols=39  Identities=18%  Similarity=0.139  Sum_probs=30.8

Q ss_pred             cCcChhhhhcC--CCCCCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773          6 PVEHPEKFLKF--GMQPSRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus         6 pl~~p~~~~sl--~i~~~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      |.-.+.+-.-+  ++.++..++|+||+|+|||+|+..+|..
T Consensus       105 ~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          105 TTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             CCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             ecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            33344443333  6899999999999999999999999986

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.74  E-value=0.00095  Score=60.37  Aligned_cols=36  Identities=28%  Similarity=0.472  Sum_probs=29.5

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccch
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGP   55 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~   55 (299)
                      .+..++|.||+|||||+|+..||..++..++..|..
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~   44 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSA   44 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence            356789999999999999999999887666655543

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.73  E-value=0.001  Score=59.14  Aligned_cols=30  Identities=23%  Similarity=0.234  Sum_probs=24.7

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFI   50 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i   50 (299)
                      .+..|+|.|++||||||+++.|+ .++..++
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La-~lg~~~i  103 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK-NLGAYII  103 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH-HHTCEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH-HCCCcEE
Confidence            45679999999999999999999 5665443

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.73  E-value=0.0002  Score=64.58  Aligned_cols=49  Identities=12%  Similarity=-0.037  Sum_probs=37.2

Q ss_pred             HHhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        200 MRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       200 L~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .++++| .+++|+-|.+++++.+.+.+.-+             +..+.+|+|||||||||.+.
T Consensus        17 ~~k~rP-~~~~~ivg~~~~~~~l~~~l~~~-------------~~~~~~L~~G~~G~GKT~la   65 (324)
T 3u61_B           17 EQKYRP-STIDECILPAFDKETFKSITSKG-------------KIPHIILHSPSPGTGKTTVA   65 (324)
T ss_dssp             HHHSCC-CSTTTSCCCHHHHHHHHHHHHTT-------------CCCSEEEECSSTTSSHHHHH
T ss_pred             HHhhCC-CCHHHHhCcHHHHHHHHHHHHcC-------------CCCeEEEeeCcCCCCHHHHH
Confidence            355777 67888888888888888887631             22256789999999999874

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.71  E-value=0.0009  Score=59.95  Aligned_cols=30  Identities=27%  Similarity=0.383  Sum_probs=26.2

Q ss_pred             CCCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         18 MQPSRGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      -..+..|+|.|++|||||||++.|+..+..
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            356788999999999999999999998753

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.70  E-value=0.00098  Score=60.46  Aligned_cols=40  Identities=20%  Similarity=0.205  Sum_probs=31.3

Q ss_pred             cCcChhhhhc--CCCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773          6 PVEHPEKFLK--FGMQPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus         6 pl~~p~~~~s--l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      |.-.+.+-.-  -++.++..++|+||||+|||+|+..++...
T Consensus        90 ~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A           90 STGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             CCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            3334444333  378999999999999999999999999864

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=96.69  E-value=0.00045  Score=62.58  Aligned_cols=26  Identities=35%  Similarity=0.538  Sum_probs=23.4

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      ...++|+||+|||||+++++++..+.
T Consensus        45 ~~~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           45 IGGVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CceEEEECCCCccHHHHHHHHHHhCc
Confidence            34699999999999999999999875

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.68  E-value=0.00018  Score=65.54  Aligned_cols=47  Identities=15%  Similarity=0.010  Sum_probs=34.4

Q ss_pred             HhccCCCCHHHHHHHHHHHHHHHHhh-cCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        201 RFARRSVNDADIRKYEMFAQTLQQSR-GFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       201 ~~~~PsVsw~DIggL~~vk~~i~~ti-~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      ++++| .+++|+-|.+++.+.+...+ .-              .+-+.+++|||||||||+|.
T Consensus         6 ~kyrP-~~~~~~vg~~~~~~~l~~~~~~~--------------~~~~~~ll~Gp~G~GKTtl~   53 (354)
T 1sxj_E            6 DKYRP-KSLNALSHNEELTNFLKSLSDQP--------------RDLPHLLLYGPNGTGKKTRC   53 (354)
T ss_dssp             TTTCC-CSGGGCCSCHHHHHHHHTTTTCT--------------TCCCCEEEECSTTSSHHHHH
T ss_pred             hccCC-CCHHHhcCCHHHHHHHHHHHhhC--------------CCCCeEEEECCCCCCHHHHH
Confidence            35667 56788878888888887765 22              12234999999999999875

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.67  E-value=0.0012  Score=59.80  Aligned_cols=35  Identities=26%  Similarity=0.302  Sum_probs=28.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeecccch
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGP   55 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~   55 (299)
                      +..++|.||+|||||+|+..||..++..++..|..
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~   37 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM   37 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence            45788999999999999999999887555554443

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.62  E-value=0.0012  Score=55.19  Aligned_cols=24  Identities=33%  Similarity=0.581  Sum_probs=21.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      -|+|+||+|+|||||++.|.....
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~   26 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCC
Confidence            388999999999999999987653

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.61  E-value=0.0014  Score=59.63  Aligned_cols=33  Identities=24%  Similarity=0.271  Sum_probs=28.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      .++.+.+++.++++|++|+||||++..||..+.
T Consensus        98 l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~  130 (320)
T 1zu4_A           98 IDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA  130 (320)
T ss_dssp             CCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred             ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            345567889999999999999999999999764

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.58  E-value=0.00026  Score=63.17  Aligned_cols=47  Identities=19%  Similarity=0.037  Sum_probs=34.7

Q ss_pred             HhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        201 RFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       201 ~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .+++| .+|+++-|-++..+.+.+.+.-              .+-+.+|+|||||||||.+.
T Consensus        13 ~~~~p-~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKt~la   59 (323)
T 1sxj_B           13 EKYRP-QVLSDIVGNKETIDRLQQIAKD--------------GNMPHMIISGMPGIGKTTSV   59 (323)
T ss_dssp             HHTCC-SSGGGCCSCTHHHHHHHHHHHS--------------CCCCCEEEECSTTSSHHHHH
T ss_pred             HhcCC-CCHHHHHCCHHHHHHHHHHHHc--------------CCCCeEEEECcCCCCHHHHH
Confidence            34666 5677777888888888887654              12234999999999999863

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.58  E-value=0.00084  Score=59.81  Aligned_cols=34  Identities=24%  Similarity=0.450  Sum_probs=26.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc-----CCeecccchh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPE   56 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~-----~~~i~i~~~~   56 (299)
                      .++|+||+|+|||+++++++..+.     ..++++++.+
T Consensus        44 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~   82 (323)
T 1sxj_B           44 HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD   82 (323)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS
T ss_pred             eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc
Confidence            399999999999999999999862     3355566543

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=96.58  E-value=0.0014  Score=58.92  Aligned_cols=35  Identities=23%  Similarity=0.181  Sum_probs=29.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhcCCeecccchh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE   56 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~   56 (299)
                      ..++|+||+|+|||+|++.++.......+++++..
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~   65 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK   65 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence            58999999999999999999998766666666543

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.58  E-value=0.00032  Score=55.90  Aligned_cols=18  Identities=17%  Similarity=-0.003  Sum_probs=15.5

Q ss_pred             CCcccccCCCCCCCeeee
Q psy13773        245 GPNSAPANESGTGGILLM  262 (299)
Q Consensus       245 ~s~~l~~g~~gtg~~ll~  262 (299)
                      ...||+|||||||||++-
T Consensus        24 ~~~vll~G~~GtGKt~lA   41 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGA   41 (145)
T ss_dssp             CSCEEEESSTTSSHHHHH
T ss_pred             CCCEEEECCCCCCHHHHH
Confidence            356999999999999874

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=96.56  E-value=0.00098  Score=68.69  Aligned_cols=30  Identities=23%  Similarity=0.309  Sum_probs=26.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHH
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      ++|.+..++.++|+||||+||||++|+++.
T Consensus       666 vsl~~~~g~i~~ItGPNGaGKSTlLr~i~~  695 (918)
T 3thx_B          666 TDLSEDSERVMIITGPNMGGKSSYIKQVAL  695 (918)
T ss_dssp             EEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred             ccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence            456677889999999999999999999985

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.56  E-value=0.0011  Score=55.96  Aligned_cols=31  Identities=26%  Similarity=0.510  Sum_probs=26.2

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFIS   51 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~   51 (299)
                      +..+.|.|++||||||+++.|+..++..++.
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~   33 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELSMIYVD   33 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence            3568999999999999999999988755543

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.55  E-value=0.001  Score=59.12  Aligned_cols=24  Identities=29%  Similarity=0.472  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      ..|+|.|+|||||||+++.|+..+
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~~   26 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAKN   26 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhC
Confidence            568999999999999999999863

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=96.54  E-value=0.00086  Score=66.24  Aligned_cols=34  Identities=15%  Similarity=0.230  Sum_probs=25.6

Q ss_pred             EEEEcCCCChHHHHHHHHHHhh---cCCeecccchhh
Q psy13773         24 VLFYGPPGCGKTLLAKAIANEC---QANFISVKGPEL   57 (299)
Q Consensus        24 vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~~~~l   57 (299)
                      ++|+||+|||||||+++|++..   ..+.+.+++.++
T Consensus        48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i   84 (608)
T 3szr_A           48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVL   84 (608)
T ss_dssp             EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEE
T ss_pred             EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEE
Confidence            9999999999999999999976   345566665553

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.54  E-value=0.0013  Score=63.71  Aligned_cols=32  Identities=28%  Similarity=0.329  Sum_probs=28.9

Q ss_pred             cCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        15 sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      +.++.++..++|.|+||||||||++++++...
T Consensus       275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~  306 (525)
T 1tf7_A          275 GGGFFKDSIILATGATGTGKTLLVSRFVENAC  306 (525)
T ss_dssp             TSSEESSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            45789999999999999999999999998654

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.51  E-value=0.00026  Score=56.34  Aligned_cols=17  Identities=12%  Similarity=-0.037  Sum_probs=15.0

Q ss_pred             CcccccCCCCCCCeeee
Q psy13773        246 PNSAPANESGTGGILLM  262 (299)
Q Consensus       246 s~~l~~g~~gtg~~ll~  262 (299)
                      ..||+|||||||||++-
T Consensus        28 ~~vll~G~~GtGKt~lA   44 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVA   44 (143)
T ss_dssp             SCEEEEEETTCCHHHHH
T ss_pred             CcEEEECCCCccHHHHH
Confidence            46999999999999874

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.49  E-value=0.0012  Score=61.10  Aligned_cols=57  Identities=11%  Similarity=0.118  Sum_probs=36.4

Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        133 VTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       133 ~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                      ....||||+.|++....++...+ ..           ...+   ..+..+|+....++.+.+.+.+.|++++
T Consensus       276 ~~~~LSgGe~qr~~la~al~~~~-~~-----------~~~p---~~lllDEpt~~LD~~~~~~~~~~l~~l~  332 (365)
T 3qf7_A          276 PARGLSGGERALISISLAMSLAE-VA-----------SGRL---DAFFIDEGFSSLDTENKEKIASVLKELE  332 (365)
T ss_dssp             EGGGSCHHHHHHHHHHHHHHHHH-HT-----------TTTC---CEEEEESCCTTSCHHHHHHHHHHHHGGG
T ss_pred             CchhCCHHHHHHHHHHHHHHhhh-cc-----------cCCC---CEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence            34579999999988766554222 11           0111   1344667777777788888888888764

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.49  E-value=0.0013  Score=54.37  Aligned_cols=24  Identities=25%  Similarity=0.355  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      -.++|+|++|+|||||++.+++..
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            468999999999999999999854

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=96.49  E-value=0.0017  Score=57.96  Aligned_cols=34  Identities=44%  Similarity=0.741  Sum_probs=26.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcC-----Ceecccchh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQA-----NFISVKGPE   56 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~-----~~i~i~~~~   56 (299)
                      .++|+||+|+|||+++++++..+..     .++.+++.+
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~   86 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD   86 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC
T ss_pred             eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc
Confidence            5999999999999999999998632     245555543

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.48  E-value=0.0015  Score=59.83  Aligned_cols=33  Identities=27%  Similarity=0.387  Sum_probs=27.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhcCCeecccc
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQANFISVKG   54 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~   54 (299)
                      ..|+|.||+|||||||++.||..++..++..|.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds   40 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS   40 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence            478999999999999999999998755554443

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.48  E-value=0.00015  Score=59.03  Aligned_cols=18  Identities=17%  Similarity=0.300  Sum_probs=15.9

Q ss_pred             CCcccccCCCCCCCeeee
Q psy13773        245 GPNSAPANESGTGGILLM  262 (299)
Q Consensus       245 ~s~~l~~g~~gtg~~ll~  262 (299)
                      ..++++|||||||||.|.
T Consensus        43 ~~~vll~G~~G~GKT~la   60 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIV   60 (187)
T ss_dssp             SCEEEEESCGGGCHHHHH
T ss_pred             CCceEEECCCCCCHHHHH
Confidence            567999999999999885

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=96.47  E-value=0.0018  Score=59.05  Aligned_cols=27  Identities=33%  Similarity=0.533  Sum_probs=23.6

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      +..++|+||+|+|||+++++++..+..
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            346899999999999999999997753

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.47  E-value=0.00026  Score=61.96  Aligned_cols=42  Identities=12%  Similarity=-0.039  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        209 DADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       209 w~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      ++++-|.....+.+.+.+..  -..          ....+|+|||||||||+|.
T Consensus         5 f~~~ig~~~~~~~~~~~~~~--~~~----------~~~~vll~G~~GtGKt~la   46 (265)
T 2bjv_A            5 KDNLLGEANSFLEVLEQVSH--LAP----------LDKPVLIIGERGTGKELIA   46 (265)
T ss_dssp             -----CCCHHHHHHHHHHHH--HTT----------SCSCEEEECCTTSCHHHHH
T ss_pred             cccceeCCHHHHHHHHHHHH--HhC----------CCCCEEEECCCCCcHHHHH
Confidence            44444555555555555443  122          2358999999999999874

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.46  E-value=0.0017  Score=58.29  Aligned_cols=28  Identities=25%  Similarity=0.395  Sum_probs=25.1

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      .+++.++|+|++|+||||++..||..+.
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~  130 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISM  130 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4678999999999999999999998764

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.46  E-value=0.0015  Score=60.15  Aligned_cols=39  Identities=23%  Similarity=0.308  Sum_probs=31.1

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHHhh---cCCeecccc
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISVKG   54 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~~   54 (299)
                      -++.++..++|+||||+|||||+..++...   +...++++.
T Consensus        56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~   97 (349)
T 2zr9_A           56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA   97 (349)
T ss_dssp             SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence            468899999999999999999999998754   234555553

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.45  E-value=0.0015  Score=54.28  Aligned_cols=24  Identities=25%  Similarity=0.355  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      -.++|+|++|+|||||++++++..
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCC
Confidence            358999999999999999999853

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.44  E-value=0.0015  Score=55.30  Aligned_cols=34  Identities=26%  Similarity=0.352  Sum_probs=27.8

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccc
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKG   54 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~   54 (299)
                      .+.+++|.||+|+|||+|+..|+.... .++.-|.
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs   66 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDR   66 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence            478899999999999999999998765 4444443

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.44  E-value=0.0021  Score=53.18  Aligned_cols=27  Identities=26%  Similarity=0.146  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      ....++|.|++|+|||||++.|+..+.
T Consensus         5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~   31 (174)
T 1np6_A            5 MIPLLAFAAWSGTGKTTLLKKLIPALC   31 (174)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence            346789999999999999999998753

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=96.42  E-value=0.0014  Score=60.56  Aligned_cols=28  Identities=29%  Similarity=0.322  Sum_probs=23.8

Q ss_pred             cCCCCCCcEEEEEcCCCChHHHHHHHHHH
Q psy13773         15 KFGMQPSRGVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        15 sl~i~~~~~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      ++.+.++ .++|+||||+||||++++|+.
T Consensus        21 ~~~~~~g-~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           21 TLNFPEG-VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence            4455566 889999999999999999996

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=96.41  E-value=0.0016  Score=66.21  Aligned_cols=26  Identities=23%  Similarity=0.258  Sum_probs=24.0

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      ..++.++|+||||+||||++|+|++.
T Consensus       605 ~~g~i~~ItGpNGsGKSTlLr~iagl  630 (800)
T 1wb9_A          605 PQRRMLIITGPNMGGKSTYMRQTALI  630 (800)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCChHHHHHHHHHH
Confidence            57789999999999999999999984

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.39  E-value=0.0019  Score=51.80  Aligned_cols=25  Identities=32%  Similarity=0.297  Sum_probs=21.7

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      +...+|+||||+||||++.+|.-.+
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3478899999999999999998755

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.39  E-value=0.00085  Score=56.32  Aligned_cols=24  Identities=21%  Similarity=0.351  Sum_probs=22.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      .|+|.|++||||||+++.|+..+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999875

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=96.39  E-value=0.0015  Score=60.29  Aligned_cols=36  Identities=25%  Similarity=0.309  Sum_probs=28.3

Q ss_pred             CCcEEEE--EcCCCChHHHHHHHHHHhhc---------CCeecccch
Q psy13773         20 PSRGVLF--YGPPGCGKTLLAKAIANECQ---------ANFISVKGP   55 (299)
Q Consensus        20 ~~~~vLL--~Gp~GsGKTtLlr~La~~l~---------~~~i~i~~~   55 (299)
                      .+..++|  +||+|+|||+|++.++..+.         ..+++++|.
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAF   95 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGG
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECC
Confidence            4567888  99999999999999998763         345666653

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.37  E-value=0.00036  Score=57.35  Aligned_cols=18  Identities=22%  Similarity=0.281  Sum_probs=16.5

Q ss_pred             CCcccccCCCCCCCeeee
Q psy13773        245 GPNSAPANESGTGGILLM  262 (299)
Q Consensus       245 ~s~~l~~g~~gtg~~ll~  262 (299)
                      ..++++|||||||||+|+
T Consensus        38 g~~~~l~G~~G~GKTtL~   55 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLA   55 (180)
T ss_dssp             CCEEEECCSSSSSHHHHH
T ss_pred             CCEEEEECCCCCCHHHHH
Confidence            568999999999999987

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=96.36  E-value=0.002  Score=60.65  Aligned_cols=32  Identities=28%  Similarity=0.348  Sum_probs=27.3

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      +.+..+..++|+||||+|||||+++|+..++.
T Consensus        21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~   52 (430)
T 1w1w_A           21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGV   52 (430)
T ss_dssp             EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence            44556789999999999999999999997754

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=96.35  E-value=0.0021  Score=57.75  Aligned_cols=34  Identities=29%  Similarity=0.235  Sum_probs=28.0

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchh
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE   56 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~   56 (299)
                      +..++|+||+|+|||+|++.++...+  .+++++..
T Consensus        31 ~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~   64 (350)
T 2qen_A           31 YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRE   64 (350)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHH
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeec
Confidence            47899999999999999999998864  55666543

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.34  E-value=0.0004  Score=58.53  Aligned_cols=48  Identities=19%  Similarity=0.095  Sum_probs=32.8

Q ss_pred             HhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        201 RFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       201 ~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .+.+| -.++++-|-+...+.+.+.+..+             +....+++|||||||||.|.
T Consensus        15 ~~~~p-~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~~ll~G~~G~GKT~l~   62 (250)
T 1njg_A           15 RKWRP-QTFADVVGQEHVLTALANGLSLG-------------RIHHAYLFSGTRGVGKTSIA   62 (250)
T ss_dssp             HHTCC-CSGGGCCSCHHHHHHHHHHHHHT-------------CCCSEEEEECSTTSCHHHHH
T ss_pred             hccCC-ccHHHHhCcHHHHHHHHHHHHcC-------------CCCeEEEEECCCCCCHHHHH
Confidence            34555 45666767777777777776541             11246899999999999874

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.34  E-value=0.00043  Score=60.85  Aligned_cols=19  Identities=11%  Similarity=-0.067  Sum_probs=16.4

Q ss_pred             CCCcccccCCCCCCCeeee
Q psy13773        244 GGPNSAPANESGTGGILLM  262 (299)
Q Consensus       244 k~s~~l~~g~~gtg~~ll~  262 (299)
                      ...++|||||||||||+|.
T Consensus        63 ~~~~vLl~G~~GtGKT~la   81 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALA   81 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHH
Confidence            3458999999999999874

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.32  E-value=0.0022  Score=60.00  Aligned_cols=33  Identities=21%  Similarity=0.425  Sum_probs=27.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVK   53 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~   53 (299)
                      ...|+|.||+|+|||||++.||..++..++..|
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~D   34 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD   34 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence            457889999999999999999998875555444

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.31  E-value=0.0012  Score=59.20  Aligned_cols=27  Identities=11%  Similarity=0.204  Sum_probs=21.0

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      .+..|+|.|++||||||+++.|+..++
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence            345799999999999999999999776

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=96.30  E-value=0.0026  Score=62.88  Aligned_cols=38  Identities=21%  Similarity=0.303  Sum_probs=32.3

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhh---cCCeecccchhh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPEL   57 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~~~~l   57 (299)
                      .+..|+|.|.+||||||+++.|+..+   +..++.+++..+
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i   91 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI   91 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence            56789999999999999999999988   777777775544

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=96.27  E-value=0.00045  Score=68.10  Aligned_cols=48  Identities=13%  Similarity=0.005  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        212 IRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       212 IggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      |-|.+++|+.+.-.+.-|.+-..++   ...+....+||+||||||||+|.
T Consensus       297 I~G~e~vk~al~~~l~~g~~~~~~~---~~~r~~~~vLL~GppGtGKT~LA  344 (595)
T 3f9v_A          297 IYGHWELKEALALALFGGVPKVLED---TRIRGDIHILIIGDPGTAKSQML  344 (595)
T ss_dssp             TSCCHHHHHHHTTTTTCCCCEETTT---TEECCSCCEEEEESSCCTHHHHH
T ss_pred             hcChHHHHHHHHHHHhCCCcccccC---CCcCCCcceEEECCCchHHHHHH
Confidence            4466777877754433211111222   44555669999999999999884

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.26  E-value=0.0011  Score=56.28  Aligned_cols=18  Identities=11%  Similarity=-0.086  Sum_probs=16.0

Q ss_pred             CCcccccCCCCCCCeeee
Q psy13773        245 GPNSAPANESGTGGILLM  262 (299)
Q Consensus       245 ~s~~l~~g~~gtg~~ll~  262 (299)
                      ..++++|||||||||.|.
T Consensus        52 ~~~~ll~G~~G~GKT~la   69 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLI   69 (242)
T ss_dssp             CSEEEEECSTTSSHHHHH
T ss_pred             CCeEEEECCCCCCHHHHH
Confidence            468999999999999875

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=96.26  E-value=0.0018  Score=66.90  Aligned_cols=30  Identities=17%  Similarity=0.171  Sum_probs=25.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHH
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      ++|.+..++.++|.||||+||||++|+++.
T Consensus       655 isl~~~~g~i~~ItGpNGsGKSTlLr~ial  684 (934)
T 3thx_A          655 VYFEKDKQMFHIITGPNMGGKSTYIRQTGV  684 (934)
T ss_dssp             EEEETTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeecCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            345567789999999999999999999954

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=96.25  E-value=0.00044  Score=63.12  Aligned_cols=48  Identities=19%  Similarity=0.095  Sum_probs=35.3

Q ss_pred             HhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        201 RFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       201 ~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      ++++| .+|+|+-|-+++.+.+...+.-+             +....+|+|||||||||.+.
T Consensus         8 ~k~rp-~~~~~~vg~~~~~~~L~~~l~~~-------------~~~~~~ll~G~~G~GKT~la   55 (373)
T 1jr3_A            8 RKWRP-QTFADVVGQEHVLTALANGLSLG-------------RIHHAYLFSGTRGVGKTSIA   55 (373)
T ss_dssp             HHTCC-CSTTTSCSCHHHHHHHHHHHHHT-------------CCCSEEEEESCTTSSHHHHH
T ss_pred             HhhCC-CchhhccCcHHHHHHHHHHHHhC-------------CCCeEEEEECCCCCCHHHHH
Confidence            45677 46777878888888888877541             11236899999999999874

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=96.20  E-value=0.0021  Score=65.01  Aligned_cols=30  Identities=27%  Similarity=0.316  Sum_probs=25.6

Q ss_pred             cCCCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        15 sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      ++.+. ++.++|.||||+||||++|+|++..
T Consensus       571 disl~-g~i~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          571 DLEMA-HELVLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             EEEES-SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             eccCC-CcEEEEECCCCCChHHHHHHHHhhh
Confidence            34445 8999999999999999999999854

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.14  E-value=0.002  Score=58.28  Aligned_cols=30  Identities=27%  Similarity=0.360  Sum_probs=24.8

Q ss_pred             cCCCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        15 sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      ++.+.++ ..+|+||||+|||+|+.+|...+
T Consensus        19 ~l~~~~g-~~~i~G~NGsGKS~ll~ai~~ll   48 (322)
T 1e69_A           19 LIGFSDR-VTAIVGPNGSGKSNIIDAIKWVF   48 (322)
T ss_dssp             EEECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred             EEecCCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence            3455555 89999999999999999999654

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.13  E-value=0.0006  Score=56.94  Aligned_cols=17  Identities=18%  Similarity=0.169  Sum_probs=15.8

Q ss_pred             CcccccCCCCCCCeeee
Q psy13773        246 PNSAPANESGTGGILLM  262 (299)
Q Consensus       246 s~~l~~g~~gtg~~ll~  262 (299)
                      .++++|||||||||.|+
T Consensus        55 ~~~~l~G~~GtGKT~la   71 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLL   71 (202)
T ss_dssp             CEEEEECSTTSSHHHHH
T ss_pred             CeEEEECCCCCCHHHHH
Confidence            68999999999999986

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.12  E-value=0.0042  Score=53.05  Aligned_cols=27  Identities=33%  Similarity=0.481  Sum_probs=24.8

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHH
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      ++.++..++|+|+||+|||+++..+|.
T Consensus        26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           26 GFPEGTTVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            689999999999999999999988764

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=96.11  E-value=0.003  Score=51.28  Aligned_cols=25  Identities=32%  Similarity=0.480  Sum_probs=22.0

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      ++..++|+|++|+|||||++.+++.
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567999999999999999999975

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=96.08  E-value=0.0042  Score=52.40  Aligned_cols=30  Identities=23%  Similarity=0.203  Sum_probs=27.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQANFIS   51 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~   51 (299)
                      ..|.|.|+.||||||+++.||..++..++.
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D   36 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS   36 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence            479999999999999999999999988763

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.05  E-value=0.0041  Score=57.33  Aligned_cols=49  Identities=20%  Similarity=0.278  Sum_probs=36.1

Q ss_pred             cCcChhhhhcC---CCCCCcEEEEEcCCCChHHHHHHHHHHhh---cCCeecccc
Q psy13773          6 PVEHPEKFLKF---GMQPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISVKG   54 (299)
Q Consensus         6 pl~~p~~~~sl---~i~~~~~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~~   54 (299)
                      |.-.+.+-.-+   ++.++..++|+|++|+|||||+..++...   +...++++.
T Consensus        45 ~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~   99 (356)
T 1u94_A           45 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA   99 (356)
T ss_dssp             CCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             cCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            33444444434   58899999999999999999999998754   345566664

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.03  E-value=0.00071  Score=64.64  Aligned_cols=40  Identities=13%  Similarity=0.000  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        209 DADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       209 w~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      +++|=|-++..+.+.+.+.-              +...++|||||||||||+|.
T Consensus       179 ld~iiGr~~~i~~l~~~l~r--------------~~~~~~LL~G~pG~GKT~la  218 (468)
T 3pxg_A          179 LDPVIGRSKEIQRVIEVLSR--------------RTKNNPVLIGEPGVGKTAIA  218 (468)
T ss_dssp             SCCCCCCHHHHHHHHHHHHC--------------SSSCEEEEESCTTTTTHHHH
T ss_pred             CCCccCcHHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHH
Confidence            34444445555555555433              33457899999999999874

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.00  E-value=0.0032  Score=50.59  Aligned_cols=23  Identities=26%  Similarity=0.514  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      ..++|+|++|+|||||++.+++.
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            35899999999999999999874

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.00  E-value=0.0045  Score=53.50  Aligned_cols=31  Identities=29%  Similarity=0.410  Sum_probs=26.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      ..+.|.|+|||||||+++.|+..++...+..
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~   39 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEKFGIPQIST   39 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred             cceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence            4588999999999999999999987665543

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.00  E-value=0.0076  Score=66.52  Aligned_cols=41  Identities=27%  Similarity=0.364  Sum_probs=32.7

Q ss_pred             cCcChhhhhcCC---CCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773          6 PVEHPEKFLKFG---MQPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus         6 pl~~p~~~~sl~---i~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      |.-++++-.-++   +.++++++|+||||||||+|+.+++.+..
T Consensus      1409 sTG~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~ 1452 (2050)
T 3cmu_A         1409 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 1452 (2050)
T ss_dssp             CCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            444555554444   89999999999999999999999988654

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.00  E-value=0.0046  Score=55.40  Aligned_cols=27  Identities=26%  Similarity=0.223  Sum_probs=24.6

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      +++.++++|++|+||||+++.||..+.
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~  123 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYK  123 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            678999999999999999999999764

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.99  E-value=0.0046  Score=50.86  Aligned_cols=26  Identities=19%  Similarity=0.055  Sum_probs=22.7

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      ...+.|.|++|+||||++..|+..+.
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence            35789999999999999999998764

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=95.99  E-value=0.0039  Score=56.23  Aligned_cols=38  Identities=21%  Similarity=0.213  Sum_probs=30.2

Q ss_pred             CcChhhhhcC--CCCCCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773          7 VEHPEKFLKF--GMQPSRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus         7 l~~p~~~~sl--~i~~~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      .-.+.+-.-+  +++++..++|+|+||+|||+|+..+|..
T Consensus        82 TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           82 TSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             CSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3344443333  6889999999999999999999999975

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.99  E-value=0.00092  Score=60.24  Aligned_cols=19  Identities=21%  Similarity=-0.008  Sum_probs=16.5

Q ss_pred             CCCcccccCCCCCCCeeee
Q psy13773        244 GGPNSAPANESGTGGILLM  262 (299)
Q Consensus       244 k~s~~l~~g~~gtg~~ll~  262 (299)
                      ...++++|||||||||+|+
T Consensus        36 ~~~~lll~G~~GtGKT~la   54 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLL   54 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHH
Confidence            3468999999999999986

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=95.97  E-value=0.0046  Score=56.13  Aligned_cols=27  Identities=22%  Similarity=0.294  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      .+..++|+||+|+|||++++++|..+.
T Consensus        23 ~~~a~L~~G~~G~GKt~~a~~la~~l~   49 (334)
T 1a5t_A           23 GHHALLIQALPGMGDDALIYALSRYLL   49 (334)
T ss_dssp             CCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             cceeEEEECCCCchHHHHHHHHHHHHh
Confidence            345799999999999999999999765

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.97  E-value=0.0042  Score=52.41  Aligned_cols=27  Identities=30%  Similarity=0.210  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      +...+|+||||+||||++.+|.-.+..
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~~~l~g   49 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAILVGLYW   49 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            357889999999999999999876653

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=95.95  E-value=0.0095  Score=53.60  Aligned_cols=51  Identities=10%  Similarity=0.092  Sum_probs=33.6

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhh------cCCeecccchhhhhccccccHHHHHHHHHHH
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANEC------QANFISVKGPELLTMWFGESEANVRDIFDKV   76 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l------~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a   76 (299)
                      ...++|+||+|+|||+++++++..+      ...+++++..+-     ......++.+.+.+
T Consensus        18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~id~ir~li~~~   74 (305)
T 2gno_A           18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIGIDDIRTIKDFL   74 (305)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBCHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCCHHHHHHHHHHH
Confidence            4589999999999999999999864      234555553210     11233466666544

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=95.94  E-value=0.0047  Score=56.38  Aligned_cols=30  Identities=20%  Similarity=0.159  Sum_probs=26.4

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      +.+..+..++|.|++|+||||++++|+..+
T Consensus        51 ~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           51 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             GGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            455778899999999999999999999865

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=95.91  E-value=0.0041  Score=56.44  Aligned_cols=39  Identities=18%  Similarity=0.199  Sum_probs=29.0

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHHhh-----cCCeecccch
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGP   55 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l-----~~~~i~i~~~   55 (299)
                      -++.++ .++|+||||+|||||+-.++...     +...++|+..
T Consensus        24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E   67 (333)
T 3io5_A           24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE   67 (333)
T ss_dssp             CCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred             CCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence            358888 79999999999999977776643     2345666643

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=95.90  E-value=0.00066  Score=61.33  Aligned_cols=17  Identities=12%  Similarity=0.018  Sum_probs=15.1

Q ss_pred             CcccccCCCCCCCeeee
Q psy13773        246 PNSAPANESGTGGILLM  262 (299)
Q Consensus       246 s~~l~~g~~gtg~~ll~  262 (299)
                      .++|||||||||||+|.
T Consensus        47 ~~vll~G~pGtGKT~la   63 (331)
T 2r44_A           47 GHILLEGVPGLAKTLSV   63 (331)
T ss_dssp             CCEEEESCCCHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHH
Confidence            38999999999999874

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=95.88  E-value=0.0044  Score=64.69  Aligned_cols=23  Identities=30%  Similarity=0.339  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHh
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      ++.++|+||||+||||++|+| +.
T Consensus       789 g~i~~ItGpNgsGKSTlLr~i-Gl  811 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQA-GL  811 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH-HH
T ss_pred             CcEEEEECCCCCChHHHHHHH-HH
Confidence            789999999999999999999 53

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.87  E-value=0.001  Score=60.00  Aligned_cols=18  Identities=17%  Similarity=0.154  Sum_probs=16.4

Q ss_pred             CCcccccCCCCCCCeeee
Q psy13773        245 GPNSAPANESGTGGILLM  262 (299)
Q Consensus       245 ~s~~l~~g~~gtg~~ll~  262 (299)
                      ..+++||||||||||.|+
T Consensus       152 ~~~lll~G~~GtGKT~La  169 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLL  169 (308)
T ss_dssp             CCEEEEECSTTSSHHHHH
T ss_pred             CceEEEECCCCCCHHHHH
Confidence            468999999999999986

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=95.87  E-value=0.0017  Score=61.18  Aligned_cols=32  Identities=25%  Similarity=0.326  Sum_probs=28.1

Q ss_pred             hhcCCCCCCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773         13 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        13 ~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -+++.++.+..++|+|+||+|||||+++|++.
T Consensus       149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~  180 (416)
T 1udx_A          149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTRA  180 (416)
T ss_dssp             EEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred             eeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence            35667788889999999999999999999875

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.86  E-value=0.0052  Score=56.35  Aligned_cols=26  Identities=27%  Similarity=0.406  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      .+..+.|+|+||+|||||+++|++.+
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            36789999999999999999999864

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=95.86  E-value=0.0033  Score=51.48  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      .++|+|++|+|||||++.+++.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999874

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=95.86  E-value=0.0059  Score=55.08  Aligned_cols=30  Identities=30%  Similarity=0.381  Sum_probs=27.3

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      .++.++..++|.|+||+|||+|+..+|...
T Consensus        63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~   92 (315)
T 3bh0_A           63 YGYKRRNFVLIAARPSMGKTAFALKQAKNM   92 (315)
T ss_dssp             SSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            578999999999999999999999998754

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=95.84  E-value=0.0055  Score=57.20  Aligned_cols=27  Identities=22%  Similarity=0.251  Sum_probs=24.8

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHH
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      .+..+..++|+|+||+|||||+++|++
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHC
Confidence            456788999999999999999999998

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=95.81  E-value=0.0055  Score=60.02  Aligned_cols=39  Identities=15%  Similarity=0.215  Sum_probs=31.1

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhc----CCeecccchhh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQ----ANFISVKGPEL   57 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~----~~~i~i~~~~l   57 (299)
                      ..+..|+|.|.+||||||+++.|+..++    ..++.+++..+
T Consensus       394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i  436 (573)
T 1m8p_A          394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV  436 (573)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred             ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence            3457889999999999999999999886    45666665443

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=95.81  E-value=0.0045  Score=50.36  Aligned_cols=23  Identities=26%  Similarity=0.514  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      ..++|+|++|+|||||++.+++.
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999974

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=95.80  E-value=0.0022  Score=63.20  Aligned_cols=27  Identities=22%  Similarity=0.409  Sum_probs=24.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCe
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANF   49 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~   49 (299)
                      .+||+||||||||+|+++|+..++...
T Consensus       329 ~vLL~GppGtGKT~LAr~la~~~~r~~  355 (595)
T 3f9v_A          329 HILIIGDPGTAKSQMLQFISRVAPRAV  355 (595)
T ss_dssp             CEEEEESSCCTHHHHHHSSSTTCSCEE
T ss_pred             ceEEECCCchHHHHHHHHHHHhCCCce
Confidence            799999999999999999999876433

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.78  E-value=0.0057  Score=50.63  Aligned_cols=25  Identities=32%  Similarity=0.468  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      .+.+++|.|+||+||||++..+...
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            5789999999999999999999874

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.77  E-value=0.0063  Score=57.73  Aligned_cols=30  Identities=33%  Similarity=0.415  Sum_probs=27.6

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      .++.++..++|.|+||+|||||+..++...
T Consensus       198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~  227 (454)
T 2r6a_A          198 SGFQRSDLIIVAARPSVGKTAFALNIAQNV  227 (454)
T ss_dssp             SSBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            578999999999999999999999999854

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=95.76  E-value=0.0034  Score=56.34  Aligned_cols=22  Identities=23%  Similarity=0.404  Sum_probs=19.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      .|+|+|++|+|||||+++|++.
T Consensus        20 ~I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           20 TLMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             EEEEEEETTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4699999999999999999874

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=95.75  E-value=0.007  Score=56.40  Aligned_cols=32  Identities=31%  Similarity=0.435  Sum_probs=28.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      ..+.+.+|..++|+||+|||||||++.|++.+
T Consensus       167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          167 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             HHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             eeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            44677889999999999999999999999865

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.67  E-value=0.0034  Score=54.87  Aligned_cols=29  Identities=14%  Similarity=0.282  Sum_probs=24.8

Q ss_pred             CCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         18 MQPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      ...+..|.|.|+.||||||+++.|+..+.
T Consensus        21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           21 GTRIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            35678899999999999999999999873

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.62  E-value=0.0071  Score=52.00  Aligned_cols=26  Identities=19%  Similarity=0.299  Sum_probs=23.6

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      +..|.|.|+.||||||+++.|+..+.
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            56789999999999999999999884

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.61  E-value=0.0079  Score=51.21  Aligned_cols=28  Identities=25%  Similarity=0.317  Sum_probs=24.9

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      .+..|.|.|++||||||+++.|+..+..
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~   32 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLRE   32 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            5778999999999999999999998753

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=95.59  E-value=0.0017  Score=62.67  Aligned_cols=16  Identities=13%  Similarity=0.088  Sum_probs=14.8

Q ss_pred             cccccCCCCCCCeeee
Q psy13773        247 NSAPANESGTGGILLM  262 (299)
Q Consensus       247 ~~l~~g~~gtg~~ll~  262 (299)
                      .+|||||||||||+|.
T Consensus        43 ~VLL~GpPGtGKT~LA   58 (500)
T 3nbx_X           43 SVFLLGPPGIAKSLIA   58 (500)
T ss_dssp             EEEEECCSSSSHHHHH
T ss_pred             eeEeecCchHHHHHHH
Confidence            7999999999999874

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.57  E-value=0.0075  Score=52.29  Aligned_cols=30  Identities=17%  Similarity=0.283  Sum_probs=24.6

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      ....+..|.|.|++||||||+++.|+..+.
T Consensus        23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           23 NAMNAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             ---CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            334577899999999999999999999775

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.57  E-value=0.0048  Score=58.06  Aligned_cols=23  Identities=22%  Similarity=0.340  Sum_probs=20.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      .|+|+|+||+|||||+++|++..
T Consensus        33 ~I~lvG~sGaGKSTLln~L~g~~   55 (418)
T 2qag_C           33 TLMVVGESGLGKSTLINSLFLTD   55 (418)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47999999999999999999864

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.54  E-value=0.0095  Score=48.69  Aligned_cols=27  Identities=22%  Similarity=0.428  Sum_probs=22.9

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      .....|+++|++|+|||||++.+++..
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344579999999999999999998753

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.52  E-value=0.0069  Score=54.31  Aligned_cols=30  Identities=23%  Similarity=0.194  Sum_probs=25.3

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      +... +..+++.|++|+||||++..||..+.
T Consensus        94 ~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~  123 (297)
T 1j8m_F           94 PDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK  123 (297)
T ss_dssp             CSSS-SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred             cCCC-CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3434 78899999999999999999998764

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=95.52  E-value=0.0078  Score=47.37  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      .++++|++|+|||||++.+.+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999874

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=95.52  E-value=0.0085  Score=55.36  Aligned_cols=49  Identities=27%  Similarity=0.317  Sum_probs=35.7

Q ss_pred             cCcChhhhhcC---CCCCCcEEEEEcCCCChHHHHHHHHHHhh---cCCeecccc
Q psy13773          6 PVEHPEKFLKF---GMQPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISVKG   54 (299)
Q Consensus         6 pl~~p~~~~sl---~i~~~~~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~~   54 (299)
                      |.-.+.+-.-+   ++.++..++|+|++|+|||+|+..++...   +...++|+.
T Consensus        56 ~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~  110 (366)
T 1xp8_A           56 STGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA  110 (366)
T ss_dssp             CCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             cCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEEC
Confidence            44445544333   58899999999999999999999988754   334555654

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=95.51  E-value=0.0072  Score=55.02  Aligned_cols=24  Identities=33%  Similarity=0.307  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      ...+|+||||+||||++.+|+-.+
T Consensus        24 ~~~~i~G~NGsGKS~lleAi~~~l   47 (339)
T 3qkt_A           24 GINLIIGQNGSGKSSLLDAILVGL   47 (339)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999986533

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=95.49  E-value=0.0078  Score=47.64  Aligned_cols=23  Identities=13%  Similarity=0.225  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -.|+++|++|+|||||++.+.+.
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999999874

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.49  E-value=0.0074  Score=52.03  Aligned_cols=28  Identities=25%  Similarity=0.292  Sum_probs=22.2

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      ..+..|.|.|++||||||+++.|+..+.
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4677899999999999999999999875

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=95.47  E-value=0.0022  Score=65.47  Aligned_cols=70  Identities=9%  Similarity=0.117  Sum_probs=44.5

Q ss_pred             HHHhhhcccCCHHH--HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccH
Q psy13773        116 RELQELVQDVDLNY--IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITR  193 (299)
Q Consensus       116 ~R~~~l~~~v~l~~--LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~  193 (299)
                      +|...+++.+++..  +.+....||||+.|+|....++..                  .+.-...+..+|+....++-+.
T Consensus       708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~------------------~p~~p~lLILDEPTsGLD~~~~  769 (842)
T 2vf7_A          708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRR------------------SGRGGTVYVLDEPTTGLHPADV  769 (842)
T ss_dssp             HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSS------------------CCSSCEEEEEECTTTTCCHHHH
T ss_pred             HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHh------------------CCCCCCEEEEECCCCCCCHHHH
Confidence            45667778888865  345667899999999987653321                  0000123446666666666677


Q ss_pred             HHHHHHHHhc
Q psy13773        194 AHFEEAMRFA  203 (299)
Q Consensus       194 ~Df~~AL~~~  203 (299)
                      +.+.+.|++.
T Consensus       770 ~~l~~lL~~L  779 (842)
T 2vf7_A          770 ERLQRQLVKL  779 (842)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777776655

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.45  E-value=0.0018  Score=58.93  Aligned_cols=17  Identities=24%  Similarity=0.216  Sum_probs=15.2

Q ss_pred             CcccccCCCCCCCeeee
Q psy13773        246 PNSAPANESGTGGILLM  262 (299)
Q Consensus       246 s~~l~~g~~gtg~~ll~  262 (299)
                      ..++||||||||||+|.
T Consensus        52 ~~~ll~Gp~G~GKTTLa   68 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLA   68 (334)
T ss_dssp             CCEEEESSTTSSHHHHH
T ss_pred             CeEEEECCCCCcHHHHH
Confidence            57999999999999874

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=95.43  E-value=0.0086  Score=47.16  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -.|+++|++|+|||||++.+...
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            35899999999999999999864

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.43  E-value=0.0023  Score=56.83  Aligned_cols=18  Identities=17%  Similarity=-0.012  Sum_probs=15.4

Q ss_pred             CCcccccCCCCCCCeeee
Q psy13773        245 GPNSAPANESGTGGILLM  262 (299)
Q Consensus       245 ~s~~l~~g~~gtg~~ll~  262 (299)
                      ...+||+||||||||+|.
T Consensus        47 ~~~~ll~G~~GtGKt~la   64 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELA   64 (311)
T ss_dssp             SEEEEEESCSSSSHHHHH
T ss_pred             ceEEEEECCCCcCHHHHH
Confidence            346999999999999874

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=95.43  E-value=0.011  Score=47.36  Aligned_cols=26  Identities=31%  Similarity=0.308  Sum_probs=22.4

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      .....|+|+|++|+|||||++.+.+.
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34567999999999999999999873

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=95.42  E-value=0.0082  Score=47.15  Aligned_cols=22  Identities=23%  Similarity=0.446  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      .++++|++|+|||||++.+.+.
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999874

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=95.38  E-value=0.011  Score=50.84  Aligned_cols=31  Identities=19%  Similarity=0.260  Sum_probs=27.3

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFIS   51 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~   51 (299)
                      ...|.|.|++||||||+++.||..++..++.
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d   44 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD   44 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence            4578999999999999999999999877644

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=95.37  E-value=0.0091  Score=47.08  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -.|+++|++|+|||||++.+.+.
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999999874

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=95.36  E-value=0.008  Score=48.02  Aligned_cols=23  Identities=43%  Similarity=0.652  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -.|+|+|++|+|||||++.+.+.
T Consensus         5 ~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            5 YRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEEECCCCccHHHHHHHHhcC
Confidence            46899999999999999999874

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=95.34  E-value=0.0088  Score=56.52  Aligned_cols=27  Identities=26%  Similarity=0.249  Sum_probs=24.0

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      ++..+++.|++|+||||++..||..+.
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~  122 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYK  122 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            478899999999999999999998663

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=95.33  E-value=0.012  Score=50.33  Aligned_cols=28  Identities=21%  Similarity=0.232  Sum_probs=25.8

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      .+..|.|.|++||||||+++.|+..+..
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            5788999999999999999999998875

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=95.32  E-value=0.0098  Score=47.14  Aligned_cols=24  Identities=21%  Similarity=0.351  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      -.|+++|++|+|||||++.+.+..
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            468999999999999999998753

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.32  E-value=0.0027  Score=57.80  Aligned_cols=43  Identities=16%  Similarity=0.088  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        210 ADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       210 ~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      +++-|-++..+.+.+.+.-  -+.        ......+++|||||||||.|.
T Consensus        19 ~~~~gr~~~~~~l~~~l~~--~~~--------~~~~~~vll~G~~G~GKT~l~   61 (387)
T 2v1u_A           19 DVLPHREAELRRLAEVLAP--ALR--------GEKPSNALLYGLTGTGKTAVA   61 (387)
T ss_dssp             SCCTTCHHHHHHHHHTTGG--GTS--------SCCCCCEEECBCTTSSHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH--HHc--------CCCCCcEEEECCCCCCHHHHH
Confidence            4455555556666555432  111        133568999999999999885

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=95.32  E-value=0.017  Score=49.11  Aligned_cols=30  Identities=27%  Similarity=0.334  Sum_probs=24.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      -.|.|+|..||||||+++.++. ++..++..
T Consensus        10 ~~iglTGgigsGKStv~~~l~~-~g~~vida   39 (210)
T 4i1u_A           10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDT   39 (210)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCcEEEC
Confidence            4689999999999999999998 66555443

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=95.32  E-value=0.0074  Score=54.06  Aligned_cols=24  Identities=21%  Similarity=0.367  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHh
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      ...++|+|+||+|||||+++|.+.
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            347999999999999999999985

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.31  E-value=0.0097  Score=47.08  Aligned_cols=22  Identities=14%  Similarity=0.360  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      .|+++|++|+|||||++.+.+.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999874

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=95.31  E-value=0.0099  Score=47.21  Aligned_cols=23  Identities=26%  Similarity=0.271  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -.|+++|++|+|||||++.+.+.
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999999874

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=95.31  E-value=0.012  Score=57.01  Aligned_cols=27  Identities=22%  Similarity=0.397  Sum_probs=24.1

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      .+..|+|+|.||+||||+++.|+..++
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L~   60 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYLN   60 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            456889999999999999999999875

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=95.30  E-value=0.012  Score=48.85  Aligned_cols=24  Identities=21%  Similarity=0.180  Sum_probs=19.9

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHh
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      +..++++||+|+||||++..++..
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~   26 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEI   26 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            567899999999999998666554

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=95.30  E-value=0.01  Score=47.60  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -.|+++|++|+|||||++.+...
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            36899999999999999999864

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=95.30  E-value=0.013  Score=46.56  Aligned_cols=25  Identities=24%  Similarity=0.333  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      ....|+++|++|+|||||++.+...
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            4557999999999999999999763

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.29  E-value=0.0093  Score=47.29  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -.|+++|++|+|||||++.+.+.
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35899999999999999999873

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.26  E-value=0.013  Score=49.06  Aligned_cols=26  Identities=23%  Similarity=0.442  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      ....++|+|++|+|||||++.+++..
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34579999999999999999999854

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.26  E-value=0.011  Score=48.74  Aligned_cols=31  Identities=16%  Similarity=0.310  Sum_probs=21.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      .++.-...-.|+|+|++|+|||||++.+...
T Consensus        21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             -------CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CCcCcCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence            3333345668999999999999999999864

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=95.25  E-value=0.0094  Score=57.50  Aligned_cols=29  Identities=7%  Similarity=0.069  Sum_probs=25.9

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      ..+..|.|.|.+||||||++++|+..++.
T Consensus       393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            45678999999999999999999999874

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.24  E-value=0.0023  Score=60.62  Aligned_cols=18  Identities=17%  Similarity=-0.021  Sum_probs=16.1

Q ss_pred             CCcccccCCCCCCCeeee
Q psy13773        245 GPNSAPANESGTGGILLM  262 (299)
Q Consensus       245 ~s~~l~~g~~gtg~~ll~  262 (299)
                      -..+++|||||||||.|+
T Consensus       130 ~~~lll~Gp~G~GKTtLa  147 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLL  147 (440)
T ss_dssp             SCCEEEECSSSSSHHHHH
T ss_pred             CCeEEEECCCCCCHHHHH
Confidence            457999999999999986

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=95.23  E-value=0.011  Score=47.49  Aligned_cols=24  Identities=33%  Similarity=0.479  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHh
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      .-.|+++|++|+|||||++.+.+.
T Consensus         8 ~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            8 ILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            346899999999999999999874

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=95.23  E-value=0.01  Score=47.07  Aligned_cols=23  Identities=26%  Similarity=0.486  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -.|+++|++|+|||||++.+.+.
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            35899999999999999999864

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.23  E-value=0.01  Score=49.37  Aligned_cols=29  Identities=21%  Similarity=0.375  Sum_probs=24.9

Q ss_pred             EEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773         24 VLFYGPPGCGKTLLAKAIANECQANFISVK   53 (299)
Q Consensus        24 vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~   53 (299)
                      ++++|++|||||+++..++.. +...+++.
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yia   30 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD-APQVLYIA   30 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS-CSSEEEEE
T ss_pred             EEEECCCCCcHHHHHHHHHhc-CCCeEEEe
Confidence            789999999999999999987 65666665

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=95.22  E-value=0.011  Score=46.74  Aligned_cols=23  Identities=22%  Similarity=0.387  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -.++++|++|+|||||++.+.+.
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35899999999999999999873

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.20  E-value=0.013  Score=50.39  Aligned_cols=29  Identities=28%  Similarity=0.250  Sum_probs=25.4

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      ..+..|.|.|++||||||+++.|+..+..
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            45778899999999999999999997754

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=95.18  E-value=0.011  Score=51.86  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      ..|+|.|++|+|||||++++.+.
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999975

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=95.17  E-value=0.0097  Score=47.27  Aligned_cols=21  Identities=33%  Similarity=0.586  Sum_probs=19.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q psy13773         23 GVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      .|+|+|++|+|||||++.+.+
T Consensus         4 ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            488999999999999999975

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=95.17  E-value=0.013  Score=55.36  Aligned_cols=30  Identities=27%  Similarity=0.308  Sum_probs=27.1

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      .++.++..++|.|+||+|||+|+..+|...
T Consensus       195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~  224 (444)
T 2q6t_A          195 GTLGPGSLNIIAARPAMGKTAFALTIAQNA  224 (444)
T ss_dssp             CCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            478999999999999999999999998754

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=95.17  E-value=0.011  Score=46.66  Aligned_cols=23  Identities=17%  Similarity=0.291  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -.|+++|++|+|||||++.+...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            35899999999999999999873

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.17  E-value=0.00081  Score=61.60  Aligned_cols=33  Identities=12%  Similarity=-0.101  Sum_probs=26.4

Q ss_pred             CCCCCC---CCCCCCCCCCcccccCCCCCCCeeeec
Q psy13773        231 NFRFPS---NPNQSQSGGPNSAPANESGTGGILLMF  263 (299)
Q Consensus       231 Plk~Pe---~~~~~~~k~s~~l~~g~~gtg~~ll~~  263 (299)
                      |+-.|+   +..-|+.+.+-+++|||||+|||.|..
T Consensus       105 ~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~  140 (343)
T 1v5w_A          105 TTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSH  140 (343)
T ss_dssp             CCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHH
T ss_pred             ecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence            555554   445688999999999999999998864

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.16  E-value=0.016  Score=47.36  Aligned_cols=26  Identities=15%  Similarity=0.262  Sum_probs=22.5

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      .....|+|+|++|+|||||++.+.+.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34567999999999999999999874

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=95.15  E-value=0.0036  Score=64.55  Aligned_cols=69  Identities=13%  Similarity=0.120  Sum_probs=44.0

Q ss_pred             HHhhhcccCCHHH--HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHH
Q psy13773        117 ELQELVQDVDLNY--IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRA  194 (299)
Q Consensus       117 R~~~l~~~v~l~~--LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~  194 (299)
                      +...+++.+++..  +.+....||||+.|+|....++..                  .+.-...+..+|+....++.+.+
T Consensus       824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~------------------~p~~p~lLILDEPTsGLD~~~~~  885 (972)
T 2r6f_A          824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHR------------------RSNGRTLYILDEPTTGLHVDDIA  885 (972)
T ss_dssp             HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSS------------------CCCSCEEEEEECTTTTCCHHHHH
T ss_pred             HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhc------------------CCCCCCEEEEECCCCCCCHHHHH
Confidence            4456677777754  445667899999999987654431                  01001234466777777777777


Q ss_pred             HHHHHHHhc
Q psy13773        195 HFEEAMRFA  203 (299)
Q Consensus       195 Df~~AL~~~  203 (299)
                      .+.+.|++.
T Consensus       886 ~l~~lL~~L  894 (972)
T 2r6f_A          886 RLLDVLHRL  894 (972)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777777665

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=95.13  E-value=0.012  Score=47.75  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -.|+|+|++|+|||||++.+.+.
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999973

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=95.12  E-value=0.011  Score=50.72  Aligned_cols=25  Identities=20%  Similarity=0.375  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      ...|+|+|++|+|||||+++|.+..
T Consensus        29 ~~~i~lvG~~g~GKStlin~l~g~~   53 (239)
T 3lxx_A           29 QLRIVLVGKTGAGKSATGNSILGRK   53 (239)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHcCCC
Confidence            3578999999999999999999843

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=95.12  E-value=0.012  Score=47.23  Aligned_cols=23  Identities=22%  Similarity=0.372  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      ..|+++|++|+|||||++.+.+.
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999999875

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=95.11  E-value=0.0033  Score=56.47  Aligned_cols=19  Identities=26%  Similarity=0.317  Sum_probs=16.2

Q ss_pred             CCCcccccCCCCCCCeeee
Q psy13773        244 GGPNSAPANESGTGGILLM  262 (299)
Q Consensus       244 k~s~~l~~g~~gtg~~ll~  262 (299)
                      ....+|+|||||||||++.
T Consensus        24 ~~~~vLi~Ge~GtGKt~lA   42 (304)
T 1ojl_A           24 SDATVLIHGDSGTGKELVA   42 (304)
T ss_dssp             TTSCEEEESCTTSCHHHHH
T ss_pred             CCCcEEEECCCCchHHHHH
Confidence            3568999999999999873

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=95.09  E-value=0.012  Score=47.10  Aligned_cols=23  Identities=30%  Similarity=0.432  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -.|+++|++|+|||||++.+...
T Consensus         7 ~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            7 LKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEEECcCCCCHHHHHHHHHhC
Confidence            46899999999999999999864

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=95.09  E-value=0.015  Score=53.15  Aligned_cols=29  Identities=24%  Similarity=0.301  Sum_probs=26.9

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      ++.++..++|.|+||+|||||+..+|...
T Consensus        42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~   70 (338)
T 4a1f_A           42 GFNKGSLVIIGARPSMGKTSLMMNMVLSA   70 (338)
T ss_dssp             SBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            78999999999999999999999998854

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=95.08  E-value=0.012  Score=47.87  Aligned_cols=24  Identities=17%  Similarity=0.367  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHh
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      .-.|+++|++|+|||||++.+.+.
T Consensus         7 ~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            7 SYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            456999999999999999999985

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=95.07  E-value=0.015  Score=49.53  Aligned_cols=26  Identities=23%  Similarity=0.377  Sum_probs=23.7

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      +..|.|.|++||||||+++.|+..+.
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            67899999999999999999999775

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=95.06  E-value=0.014  Score=54.93  Aligned_cols=27  Identities=26%  Similarity=0.223  Sum_probs=24.6

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      ++..++++|++|+||||++..||..+.
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~  123 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYK  123 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            678899999999999999999999765

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=95.05  E-value=0.0039  Score=49.95  Aligned_cols=19  Identities=26%  Similarity=0.221  Sum_probs=16.6

Q ss_pred             CCCcccccCCCCCCCeeee
Q psy13773        244 GGPNSAPANESGTGGILLM  262 (299)
Q Consensus       244 k~s~~l~~g~~gtg~~ll~  262 (299)
                      +...++++||+|+|||.|+
T Consensus        35 ~g~~~~l~G~~G~GKTtL~   53 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLL   53 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHH
T ss_pred             CCCEEEEECCCCCCHHHHH
Confidence            4568999999999999876

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=95.05  E-value=0.013  Score=46.25  Aligned_cols=22  Identities=23%  Similarity=0.303  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      .++++|++|+|||||++.+...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4889999999999999999863

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.04  E-value=0.013  Score=47.34  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -.|+++|++|+|||||++.+.+.
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999999874

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=95.03  E-value=0.013  Score=47.95  Aligned_cols=23  Identities=30%  Similarity=0.431  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -.|+|+|++|+|||||++.+.+.
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            46899999999999999999874

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=95.03  E-value=0.013  Score=46.94  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -.|+++|++|+|||||++.+...
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999863

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.02  E-value=0.013  Score=46.79  Aligned_cols=25  Identities=20%  Similarity=0.267  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      .-.|+++|++|+|||||++.+.+..
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC
Confidence            3579999999999999999998743

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.02  E-value=0.013  Score=47.17  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      ..|+|+|++|+|||||++.+...
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            46999999999999999999874

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=95.00  E-value=0.011  Score=56.17  Aligned_cols=28  Identities=21%  Similarity=0.337  Sum_probs=24.1

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      ..+..|+|+|.+||||||+++.|+..++
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~   64 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLN   64 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3456789999999999999999999775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	299
d1lv7a_	256	c.37.1.20 (A:) AAA domain of cell division protein	2e-31
d1lv7a_	256	c.37.1.20 (A:) AAA domain of cell division protein	4e-05
d1ixza_	247	c.37.1.20 (A:) AAA domain of cell division protein	2e-25
d1ixza_	247	c.37.1.20 (A:) AAA domain of cell division protein	8e-08
d1ixza_	247	c.37.1.20 (A:) AAA domain of cell division protein	7e-07
d1e32a2	258	c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p	6e-24
d1e32a2	258	c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p	2e-04
d1r7ra3	265	c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p	5e-22
d1r7ra3	265	c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p	9e-07
d1w44a_	321	c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta	3e-21
d1svma_	362	c.37.1.20 (A:) Papillomavirus large T antigen heli	8e-18
d1gvnb_	273	c.37.1.21 (B:) Plasmid maintenance system epsilon/	9e-16
d1d2na_	246	c.37.1.20 (A:) Hexamerization domain of N-ethylmal	2e-10
d1sxja2	253	c.37.1.20 (A:295-547) Replication factor C1 {Baker	2e-08
d1ofha_	309	c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId	4e-08
d1ixsb2	239	c.37.1.20 (B:4-242) Holliday junction helicase Ruv	2e-07
d1fnna2	276	c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob	1e-06
d1g41a_	443	c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId	1e-06
d1w5sa2	287	c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t	8e-06
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	1e-05
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	1e-05
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	2e-05
d1lw7a2	192	c.37.1.1 (A:220-411) Transcriptional regulator Nad	2e-05
d1in4a2	238	c.37.1.20 (A:17-254) Holliday junction helicase Ru	5e-05
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	6e-05
d2fnaa2	283	c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfo	7e-05
d1tf7a2	242	c.37.1.11 (A:256-497) Circadian clock protein KaiC	8e-05
d1n0wa_	242	c.37.1.11 (A:) DNA repair protein Rad51, catalytic	1e-04
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	2e-04
d2gnoa2	198	c.37.1.20 (A:11-208) gamma subunit of DNA polymera	2e-04
d1g8pa_	333	c.37.1.20 (A:) ATPase subunit of magnesium chelata	3e-04
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	5e-04
d1a5ta2	207	c.37.1.20 (A:1-207) delta prime subunit of DNA pol	7e-04
d1szpa2	251	c.37.1.11 (A:145-395) DNA repair protein Rad51, ca	8e-04
d1um8a_	364	c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 2	9e-04
d1zaka1	189	c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Mai	0.001
d1sxje2	252	c.37.1.20 (E:4-255) Replication factor C5 {Baker's	0.002
d2i1qa2	258	c.37.1.11 (A:65-322) DNA repair protein Rad51, cat	0.002
d2cdna1	181	c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium	0.002
d1sxjd2	237	c.37.1.20 (D:26-262) Replication factor C2 {Baker'	0.002
d1pzna2	254	c.37.1.11 (A:96-349) DNA repair protein Rad51, cat	0.003
d1v5wa_	258	c.37.1.11 (A:) Meiotic recombination protein DMC1/	0.003
d1e4va1	179	c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Esc	0.003
d1rkba_	173	c.37.1.1 (A:) Adenylate kinase {Human (Homo sapien	0.003
d1tf7a1	242	c.37.1.11 (A:14-255) Circadian clock protein KaiC	0.004
d1kaga_	169	c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia	0.004

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

 Score =  115 bits (290), Expect = 2e-31
 Identities = 53/210 (25%), Positives = 71/210 (33%), Gaps = 55/210 (26%)

Query: 6   PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
            +  P +F K G +  +GVL  GPPG GKTLLAKAIA E +  F ++ G + + M+ G  
Sbjct: 30  YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVG 89

Query: 66  EANVR----------------DIFDKVTMENFRYAMGKSS-------------------- 89
            + VR                D  D V  +      G                       
Sbjct: 90  ASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149

Query: 90  --------------PSALR-----ETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI 130
                           AL      +  V V          +  V      L  D+D   I
Sbjct: 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAII 209

Query: 131 AKVTNGFSGADLTEICQRACKLAIRQSIET 160
           A+ T GFSGADL  +   A   A R +   
Sbjct: 210 ARGTPGFSGADLANLVNEAALFAARGNKRV 239

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 99  EVPNITWEDIGGLEGVKRELQELVQ 123
           +    T+ D+ G +  K E+ ELV+
Sbjct: 5   DQIKTTFADVAGCDEAKEEVAELVE 29

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

 Score =   99 bits (249), Expect = 2e-25
 Identities = 28/70 (40%), Positives = 44/70 (62%)

Query: 6  PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
           +++P +F + G +  +GVL  GPPG GKT LA+A+A E +  FI+  G + + M+ G  
Sbjct: 27 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 86

Query: 66 EANVRDIFDK 75
           A VRD+F+ 
Sbjct: 87 AARVRDLFET 96

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

 Score = 49.8 bits (119), Expect = 8e-08
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 5/76 (6%)

Query: 90  PSALR-----ETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLTE 144
             AL      +  + +     +    +  +    + L +DVDL  +AK T GF GADL  
Sbjct: 161 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLEN 220

Query: 145 ICQRACKLAIRQSIET 160
           +   A  LA R+    
Sbjct: 221 LLNEAALLAAREGRRK 236

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

 Score = 47.2 bits (112), Expect = 7e-07
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 99  EVPNITWEDIGGLEGVKRELQELVQ 123
           E P +T++D+ G E  K EL+E+V+
Sbjct: 2   EAPKVTFKDVAGAEEAKEELKEIVE 26

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 95.9 bits (237), Expect = 6e-24
 Identities = 62/249 (24%), Positives = 99/249 (39%), Gaps = 65/249 (26%)

Query: 5   YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
            P+ HP  F   G++P RG+L YGPPG GKTL+A+A+ANE  A F  + GPE+++   GE
Sbjct: 22  LPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 81

Query: 65  SEANVRDIFDK--------VTMENFRYAMGKSS--------------------------- 89
           SE+N+R  F++        + ++       K                             
Sbjct: 82  SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 141

Query: 90  --------PSALRETI---------VEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAK 132
                   P+++   +         V++          +  +  +  +L  DVDL  +A 
Sbjct: 142 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVAN 201

Query: 133 VTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEIT 192
            T+G  GADL  +C  A   AIR+ ++  I  E E +      S              +T
Sbjct: 202 ETHGHVGADLAALCSEAALQAIRKKMD-LIDLEDETIDAEVMNS------------LAVT 248

Query: 193 RAHFEEAMR 201
              F  A+ 
Sbjct: 249 MDDFRWALS 257

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 5/21 (23%), Positives = 14/21 (66%)

Query: 103 ITWEDIGGLEGVKRELQELVQ 123
           + ++D+GG      +++E+V+
Sbjct: 1   VGYDDVGGCRKQLAQIKEMVE 21

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.6 bits (224), Expect = 5e-22
 Identities = 66/71 (92%), Positives = 70/71 (98%)

Query: 5  YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
          YPVEHP+KFLKFGM PS+GVLFYGPPGCGKTLLAKAIANECQANFIS+KGPELLTMWFGE
Sbjct: 25 YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 84

Query: 65 SEANVRDIFDK 75
          SEANVR+IFDK
Sbjct: 85 SEANVREIFDK 95

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.7 bits (110), Expect = 9e-07
 Identities = 21/24 (87%), Positives = 22/24 (91%)

Query: 100 VPNITWEDIGGLEGVKRELQELVQ 123
           VP +TWEDIGGLE VKRELQELVQ
Sbjct: 1   VPQVTWEDIGGLEDVKRELQELVQ 24

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

 Score = 89.3 bits (221), Expect = 3e-21
 Identities = 29/204 (14%), Positives = 54/204 (26%), Gaps = 41/204 (20%)

Query: 6   PVEHPEKFLKFGMQPSRGV-LFYGPPGCGKTLLAKAIANEC--QANFISVKGPELLTMWF 62
               P      G + + G+ +  G    GKT L  A+      +  + +V+  E L+ + 
Sbjct: 107 VGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYN 166

Query: 63  GESEANVRDIFDKVT---------MENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEG 113
            +    V DI   +          ++N   A G ++ S                +    G
Sbjct: 167 TDFNVFVDDIARAMLQHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRG 226

Query: 114 V-------------------------KRELQELVQDVD--LNYIAKVTNGF--SGADLTE 144
                                           +  DVD     + +   G       L  
Sbjct: 227 CVVIASLNPTSNDDKIVELVKEASRSNSTSLVISTDVDGEWQVLTRTGEGLQRLTHTLQT 286

Query: 145 ICQRACKLAIRQSIETEIRREREK 168
                  L I  S ++  ++   K
Sbjct: 287 SYGEHSVLTIHTSKQSGGKQASGK 310

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

 Score = 80.1 bits (197), Expect = 8e-18
 Identities = 31/227 (13%), Positives = 62/227 (27%), Gaps = 26/227 (11%)

Query: 2   ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM- 60
           + +   +  +  +   +   R  LF GP   GKT LA A+   C    ++V  P      
Sbjct: 136 MDSVVYDFLKCMVY-NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNF 194

Query: 61  WFGESEANVRDIFDKVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEG-VKRELQ 119
             G +      +F+ V          +  PS     I  + N+     G ++  ++++  
Sbjct: 195 ELGVAIDQFLVVFEDVKGTGGE---SRDLPSGQ--GINNLDNLRDYLDGSVKVNLEKKHL 249

Query: 120 ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAM 179
                +    I    N +S     +           +          E L          
Sbjct: 250 NKRTQIFPPGIV-TMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEK------- 301

Query: 180 ETEDEDDPV-----PEITRAHF-----EEAMRFARRSVNDADIRKYE 216
                   +          A F        + +  R   +  +  Y+
Sbjct: 302 RIIQSGIALLLMLIWYRPVAEFAQSIQSRIVEWKERLDKEFSLSVYQ 348

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 73.5 bits (179), Expect = 9e-16
 Identities = 27/246 (10%), Positives = 56/246 (22%), Gaps = 41/246 (16%)

Query: 15  KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM---WFGESEANVRD 71
           K  ++     L  G PG GKT L  AI  E Q N I +           +    +   +D
Sbjct: 26  KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKD 85

Query: 72  IFDKVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-- 129
           +                      +    V   T             LQ    +  +    
Sbjct: 86  VVKH-VTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMA 144

Query: 130 -------------------------------IAKVTNGFSGADLTEICQRACKLAIRQSI 158
                                             +       +L  + +      IR   
Sbjct: 145 VPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYN 204

Query: 159 ETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMF 218
              ++        + +    +E E       +++    +  +    + +     ++   F
Sbjct: 205 REGVKLYSSLETPSISPKETLEKELNR----KVSGKEIQPTLERIEQKMVLNKHQETPEF 260

Query: 219 AQTLQQ 224
               Q+
Sbjct: 261 KAIQQK 266

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 58.0 bits (139), Expect = 2e-10
 Identities = 17/75 (22%), Positives = 28/75 (37%)

Query: 11  EKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVR 70
           ++       P   VL  GPP  GKT LA  IA E    FI +  P+ +  +   ++    
Sbjct: 30  QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAM 89

Query: 71  DIFDKVTMENFRYAM 85
                   ++    +
Sbjct: 90  KKIFDDAYKSQLSCV 104

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.7 bits (122), Expect = 2e-08
 Identities = 18/106 (16%), Positives = 40/106 (37%), Gaps = 5/106 (4%)

Query: 1   MISTYPVEHPEKFLKFGMQPS---RGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 57
            ++ +       F   G   S   R  + YGPPG GKT  A  +A E   + +     ++
Sbjct: 29  WLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDV 88

Query: 58  LTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSALRETIVEVPNI 103
                    A V++  D +++  +     ++     +  ++ +  +
Sbjct: 89  --RSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEV 132

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

 Score = 51.4 bits (122), Expect = 4e-08
 Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 13/111 (11%)

Query: 20  PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME 79
             + +L  GP G GKT +A+ +A    A FI V+  +   + +      V    D +  +
Sbjct: 48  TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGY------VGKEVDSIIRD 101

Query: 80  NFRYAMGKSSPSALR--ETIVEVPNITWEDIGGL-----EGVKRELQELVQ 123
               A G            I E+  I  +          EGV+R+L  LV+
Sbjct: 102 LTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVE 152

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

 Score = 48.4 bits (114), Expect = 2e-07
 Identities = 19/88 (21%), Positives = 34/88 (38%)

Query: 12  KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRD 71
           +  K   +P   +L +GPPG GKT LA  IA+E   N     GP +       +      
Sbjct: 26  EAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSL 85

Query: 72  IFDKVTMENFRYAMGKSSPSALRETIVE 99
               +   +  + + + +   L   + +
Sbjct: 86  EEGDILFIDEIHRLSRQAEEHLYPAMED 113

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 46.7 bits (109), Expect = 1e-06
 Identities = 10/75 (13%), Positives = 18/75 (24%), Gaps = 4/75 (5%)

Query: 11  EKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN----FISVKGPELLTMWFGESE 66
             +L+            G PG GKT+  + +    +      F+ + G           E
Sbjct: 33  GNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGE 92

Query: 67  ANVRDIFDKVTMENF 81
                          
Sbjct: 93  IARSLNIPFPRRGLS 107

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 443

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

 Score = 47.1 bits (111), Expect = 1e-06
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 14  LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE--SEANVRD 71
           L+  + P   +L  GP G GKT +A+ +A    A FI V+  +   + +     ++ +RD
Sbjct: 43  LRHEVTPK-NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRD 101

Query: 72  IFDKVTMENFRYAMGK 87
           + D       +  + K
Sbjct: 102 LTDSAMKLVRQQEIAK 117

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

 Score = 44.0 bits (102), Expect = 8e-06
 Identities = 14/88 (15%), Positives = 21/88 (23%), Gaps = 3/88 (3%)

Query: 7   VEHPEKFLKFGMQPSR---GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 63
                  L  G   S         G  G GKT LAK                        
Sbjct: 29  ARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 88

Query: 64  ESEANVRDIFDKVTMENFRYAMGKSSPS 91
            +  N+  I   +  +       + +P+
Sbjct: 89  FNAPNLYTILSLIVRQTGYPIQVRGAPA 116

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 22/176 (12%), Positives = 48/176 (27%), Gaps = 15/176 (8%)

Query: 19  QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTM 78
                 +  G  G GK+ +A  +A++  A F+          +        +    +   
Sbjct: 4   HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLD-------GDFLHPRRNIEKMASGEPLN 56

Query: 79  ENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFS 138
           ++ R    ++   A                   +  +  L+E   ++   Y+        
Sbjct: 57  DDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLK------- 109

Query: 139 GADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRA 194
             D   I  R             +  + E L    A    +   D D P+  +  +
Sbjct: 110 -GDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVAS 164

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 22/127 (17%), Positives = 35/127 (27%), Gaps = 4/127 (3%)

Query: 21  SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMEN 80
           +R V   GPPG GKT L    +   +++ + V G     +  G      R  FD VT+  
Sbjct: 1   ARHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQG----GRRIGFDVVTLSG 56

Query: 81  FRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGA 140
            R  + +                   D+   E +   +                    G 
Sbjct: 57  TRGPLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGK 116

Query: 141 DLTEICQ 147
                  
Sbjct: 117 MELFSQL 123

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 16/173 (9%), Positives = 45/173 (26%), Gaps = 19/173 (10%)

Query: 21  SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMEN 80
           +R ++  G    GK+ + + + +     +++     L+     + ++    I        
Sbjct: 3   TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGV 62

Query: 81  FRYAMGKSSPSALRETIVEVPNITWEDI-GGLEGVKRELQELVQDVDLNYIAKVTNGFSG 139
                 ++   A  E +V +       I   +       QE  +    +           
Sbjct: 63  SIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDL---------- 112

Query: 140 ADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEIT 192
                       + +R        RE  +       +A       +    ++ 
Sbjct: 113 --------DVLWVGVRCDGAVAEGRETARGDRVAGMAAKQAYVVHEGVEYDVE 157

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 16/190 (8%), Positives = 43/190 (22%), Gaps = 15/190 (7%)

Query: 20  PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME 79
            ++ V   G    GK++L   +A           G E +    G  E   + +      +
Sbjct: 6   FAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDE---QAMQYSDYPQ 62

Query: 80  NFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSG 139
                      +      +   +  +                  D  +            
Sbjct: 63  MALGHQRYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLK 122

Query: 140 ADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEA 199
            +   +      L  ++  +   +  ++ L            +    P  EI    + + 
Sbjct: 123 NNTEWVDDGLRSLGSQKQRQQFQQLLKKLL------------DKYKVPYIEIESPSYLDR 170

Query: 200 MRFARRSVND 209
               +  +  
Sbjct: 171 YNQVKAVIEK 180

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.5 bits (96), Expect = 5e-05
 Identities = 19/34 (55%), Positives = 20/34 (58%)

Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 57
          VL  GPPG GKT LA  IA+E Q N     GP L
Sbjct: 38 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 71

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.2 bits (95), Expect = 6e-05
 Identities = 24/203 (11%), Positives = 62/203 (30%), Gaps = 12/203 (5%)

Query: 24  VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRY 83
           ++  GP   GKT L   +  +     +  + P     + G     V              
Sbjct: 6   IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSD 65

Query: 84  AMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLT 143
            +   +        +    +  + +        ++  + +    N I  +    + ++L 
Sbjct: 66  YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGI-DILIACNKSELF 124

Query: 144 EICQRACKLAIRQSIETEIRREREKLAGNPAA---SAAMETEDED-----DPVPEITRAH 195
                +    I+ ++E+EI++  E+   +          E   E+             A+
Sbjct: 125 TARPPS---KIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDGFKFAN 181

Query: 196 FEEAMRFARRSVNDADIRKYEMF 218
            E ++     S+N   I ++  +
Sbjct: 182 LEASVVAFEGSINKRKISQWREW 204

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Length = 283

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 41.3 bits (95), Expect = 7e-05
 Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 7/57 (12%)

Query: 3  STYPVEHPEKFL-------KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISV 52
           T P ++ + F        K     +   L  G    GK+ + K   NE    +I +
Sbjct: 4  DTSPKDNRKDFFDREKEIEKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYL 60

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

 Score = 41.1 bits (95), Expect = 8e-05
 Identities = 33/212 (15%), Positives = 62/212 (29%), Gaps = 17/212 (8%)

Query: 12  KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRD 71
           +    G      +L  G  G GKTLL         AN             + ES A +  
Sbjct: 17  EMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAI-----LFAYEESRAQLLR 71

Query: 72  IFDKVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDV-DLNYI 130
                 M+                 IV     +      L+ +K E+ +       ++ +
Sbjct: 72  NAYSWGMDFEEMERQN------LLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSL 125

Query: 131 AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPE 190
           + +  G S     +        A ++ I        ++  G  + + +  +   D  +  
Sbjct: 126 SALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILL 185

Query: 191 ITRAHFEEAMRFA-----RRSVNDADIRKYEM 217
                  E  R       R S +D  IR++ +
Sbjct: 186 QYVEIRGEMSRAINVFKMRGSWHDKAIREFMI 217

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 1e-04
 Identities = 12/61 (19%), Positives = 19/61 (31%)

Query: 12 KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRD 71
          K L+ G++       +G    GKT +   +A  CQ       G         E       
Sbjct: 14 KLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPER 73

Query: 72 I 72
          +
Sbjct: 74 L 74

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 11/58 (18%), Positives = 19/58 (32%)

Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENF 81
          +L  G PG GK+ +A+A+AN      +     +L                 +      
Sbjct: 7  LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIM 64

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 4/43 (9%), Positives = 14/43 (32%), Gaps = 2/43 (4%)

Query: 7  VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANF 49
          +E  ++ ++     S  +L  G        ++  +    +   
Sbjct: 3  LETLKRIIEKSEGIS--ILINGEDLSYPREVSLELPEYVEKFP 43

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 23 GVLFYGPPGCGKTLLAKAIA 42
          GVL +G  G GK+   +A+A
Sbjct: 30 GVLVFGDRGTGKSTAVRALA 49

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 38.0 bits (87), Expect = 5e-04
 Identities = 23/184 (12%), Positives = 52/184 (28%), Gaps = 12/184 (6%)

Query: 21  SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMEN 80
           ++ V+  G PG G T  ++   +  +   ++ K     ++ F  ++     + D+  M  
Sbjct: 1   NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAK-EENLVSDRDQMRK 59

Query: 81  FRYAMGKSSPSALRETIVEVPNITW--EDIGGLEGVKRELQELVQDVDLNYIAKVTNGFS 138
                 K         I E+   +    D        +     +    LN +        
Sbjct: 60  MDPETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVV 119

Query: 139 GADLTEICQRACK--LAIRQSIETEIRREREKLAGNPAASAAMETE-------DEDDPVP 189
                EI  R       +R         + + +    A S  + T        + +  + 
Sbjct: 120 ETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKIVQNRNGLLD 179

Query: 190 EITR 193
           +   
Sbjct: 180 QAVE 183

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

 Score = 37.8 bits (86), Expect = 7e-04
 Identities = 6/25 (24%), Positives = 8/25 (32%)

Query: 25 LFYGPPGCGKTLLAKAIANECQANF 49
          L    PG G   L  A++       
Sbjct: 28 LIQALPGMGDDALIYALSRYLLCQQ 52

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.8 bits (86), Expect = 8e-04
 Identities = 16/146 (10%), Positives = 36/146 (24%)

Query: 17  GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKV 76
           G++       +G    GK+ L   +A  CQ       G         E       +    
Sbjct: 30  GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIA 89

Query: 77  TMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNG 136
                      ++ +  R    +      +    +    R    +V  V   Y    +  
Sbjct: 90  QRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGR 149

Query: 137 FSGADLTEICQRACKLAIRQSIETEI 162
              +       +  +   R + +  +
Sbjct: 150 GELSARQMHLAKFMRALQRLADQFGV 175

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Length = 364

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

 Score = 38.3 bits (88), Expect = 9e-04
 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 4/112 (3%)

Query: 20  PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM-WFGESEANVRDIFDKVTM 78
               +L  GP G GKTL+A+ +A              L    + GE   N+     + + 
Sbjct: 67  SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 126

Query: 79  ENFRYAMGKS--SPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN 128
            N + A           + + +        D+ G EGV++ L ++V+   +N
Sbjct: 127 WNVQKAQKGIVFIDEIDKISRLSENRSITRDVSG-EGVQQALLKIVEGSLVN 177

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFD 74
          V+  G P  GK    + I  + Q   IS    +LL         N +   +
Sbjct: 6  VMISGAPASGKGTQCELIKTKYQLAHISAG--DLLRAEIAAGSENGKRAKE 54

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 8/66 (12%), Positives = 19/66 (28%)

Query: 24  VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRY 83
           +L YGP G GK     A+        +     ++       +     ++           
Sbjct: 36  LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP 95

Query: 84  AMGKSS 89
           +   ++
Sbjct: 96  SDMGNN 101

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 9/44 (20%), Positives = 14/44 (31%)

Query: 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 60
          G++      F G  G GKT +        Q         E ++ 
Sbjct: 30 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSK 73

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 19/144 (13%), Positives = 38/144 (26%), Gaps = 4/144 (2%)

Query: 24  VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRY 83
           VL  GPPG GK   A  +A +     IS    EL      E      +      ++    
Sbjct: 3   VLLLGPPGAGKGTQAVKLAEKLGIPQISTG--ELFRRNIEEGTKLGVEAKR--YLDAGDL 58

Query: 84  AMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLT 143
                +   + + +          + G      + + L + ++                 
Sbjct: 59  VPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEE 118

Query: 144 EICQRACKLAIRQSIETEIRRERE 167
            + +R          +  I    +
Sbjct: 119 VLLERLKGRGRADDTDDVILNRMK 142

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 7/109 (6%)

Query: 7   VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 66
           V   +K LK    P   +LFYGPPG GKT    A+  E     +       L        
Sbjct: 21  VTVLKKTLKSANLPH--MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGI 78

Query: 67  ANVRDI---FDKVTMENFRYAMGKSSPSALRETIV--EVPNITWEDIGG 110
           + VR+    F ++T+        ++ P    + I+  E  ++T +    
Sbjct: 79  SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSA 127

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 13/92 (14%), Positives = 22/92 (23%)

Query: 17  GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKV 76
           G++       +G  G GKT LA  +A   Q           +     E+      I +  
Sbjct: 32  GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIA 91

Query: 77  TMENFRYAMGKSSPSALRETIVEVPNITWEDI 108
                            R        +  +  
Sbjct: 92  QNRGLDPDEVLKHIYVARAFNSNHQMLLVQQA 123

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 12 KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 66
          K L  G++       +G    GKT L+  +    Q       G     + F ++E
Sbjct: 28 KLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGA--GGYPGGKIIFIDTE 80

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 1/53 (1%)

Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGP-ELLTMWFGESEANVRDIFDK 75
          ++  G P  GK   A+ I  +     IS             E     +DI D 
Sbjct: 3  IILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDA 55

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISV 52
          +L  G PG GKT L K +A++    +I+V
Sbjct: 7  ILLTGTPGVGKTTLGKELASKSGLKYINV 35

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 12/67 (17%), Positives = 18/67 (26%), Gaps = 4/67 (5%)

Query: 12 KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRD 71
               G+   R  L  G  G GKTL +          F          + F E+  ++  
Sbjct: 17 DISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGV----FVTFEETPQDIIK 72

Query: 72 IFDKVTM 78
                 
Sbjct: 73 NARSFGW 79

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

 Score = 35.1 bits (79), Expect = 0.004
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 22 RGVLFYGPPGCGKTLLAKAIANECQANFISV 52
          R +   GP G GK+ + + +A +    F   
Sbjct: 3  RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 33

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	299
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.93
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	99.9
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	99.89
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.87
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.41
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	99.36
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.33
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	99.28
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.25
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.24
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.21
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.16
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.15
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.14
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.1
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	99.1
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.08
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.06
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.01
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	98.96
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	98.96
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	98.95
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	98.95
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	98.94
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.92
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	98.92
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	98.9
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	98.9
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.88
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	98.79
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.62
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	98.6
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	98.56
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.56
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	98.53
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.48
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	98.32
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	98.26
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.24
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	98.23
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	98.21
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.18
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.15
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.07
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	98.05
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.99
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.98
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.97
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.94
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.94
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.94
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.88
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.87
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.84
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.8
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.77
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.75
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.72
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.7
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.7
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.7
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.68
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.66
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.65
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.63
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.61
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.58
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.57
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.57
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.56
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.54
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	97.53
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.53
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.49
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.49
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	97.48
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.48
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.45
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.45
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.43
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.42
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.4
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.39
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.39
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.39
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.38
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.38
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.35
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.34
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.34
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.34
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	97.33
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.32
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.32
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.27
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.24
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	97.22
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.22
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.17
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.11
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.11
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.01
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.0
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.98
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.97
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.94
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.94
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.92
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.9
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.84
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.78
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.77
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.76
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.75
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.7
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.67
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.67
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.63
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.57
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.55
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.55
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.48
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.48
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.47
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.33
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.27
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.26
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.22
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.22
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.19
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.18
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.14
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.1
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.01
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.99
d1vmaa2	213	GTPase domain of the signal recognition particle r	95.99
d1nrjb_	209	Signal recognition particle receptor beta-subunit	95.99
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.96
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.96
d1okkd2	207	GTPase domain of the signal recognition particle r	95.92
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.92
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	95.92
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	95.91
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	95.83
d2qy9a2	211	GTPase domain of the signal recognition particle r	95.81
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.81
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.79
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	95.79
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	95.78
d1ls1a2	207	GTPase domain of the signal sequence recognition p	95.74
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.74
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.73
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	95.71
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	95.68
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.66
d1j8yf2	211	GTPase domain of the signal sequence recognition p	95.66
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.65
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.63
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.58
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.57
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.54
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.49
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.47
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.45
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	95.42
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.42
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.38
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.35
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.34
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.33
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	95.33
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.29
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.28
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	95.27
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	95.22
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.18
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.17
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.17
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.15
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	95.14
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.11
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.1
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.06
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.06
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.04
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.03
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	95.03
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.03
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	95.02
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.01
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	94.99
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	94.96
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	94.96
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	94.94
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	94.94
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	94.93
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.92
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.92
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	94.91
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	94.89
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	94.88
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.87
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.85
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.83
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	94.83
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	94.83
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	94.82
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	94.82
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	94.8
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.75
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	94.75
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	94.74
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.74
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	94.72
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	94.69
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	94.66
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	94.64
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	94.62
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.56
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	94.55
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	94.55
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	94.52
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	94.51
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	94.5
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	94.49
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	94.48
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	94.45
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	94.41
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	94.4
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	94.38
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.27
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	94.25
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	94.21
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.17
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.17
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	94.15
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.14
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	94.11
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.1
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	94.06
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	94.03
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	94.01
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	93.97
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.93
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.86
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	93.83
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	93.78
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.74
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.73
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	93.58
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	93.51
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	93.49
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	93.46
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	93.41
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.38
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	93.3
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.22
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.19
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.15
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	93.1
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.09
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	92.82
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	92.58
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	92.35
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.27
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	92.07
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	91.85
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	91.78
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	91.52
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.51
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	91.3
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	91.24
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	91.23
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	91.1
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	91.09
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	91.06
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	90.61
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	90.47
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	90.4
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	90.12
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	89.98
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	89.73
d1j8yf2	211	GTPase domain of the signal sequence recognition p	89.68
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	89.59
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	89.34
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	89.28
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	89.27
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	89.25
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	89.2
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	89.1
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	89.07
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	88.91
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	88.48
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	88.45
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.96
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	87.81
d1ls1a2	207	GTPase domain of the signal sequence recognition p	87.56
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	87.42
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	87.4
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	87.39
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.13
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	87.11
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	87.03
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	86.89
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	86.87
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	86.84
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	86.83
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	86.15
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	85.95
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	85.8
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	85.38
d1okkd2	207	GTPase domain of the signal recognition particle r	85.17
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	84.92
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	84.85
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	83.93
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	83.66
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	83.0
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	82.67
d2qy9a2	211	GTPase domain of the signal recognition particle r	82.34
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	82.16
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	82.1
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	82.02
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	82.0
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	81.99
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	81.9
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	81.85
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	81.84
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	81.52
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	81.32
d1goja_	354	Kinesin {Neurospora crassa [TaxId: 5141]}	81.21
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	81.17
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	80.89
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	80.35
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	80.19
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	80.08

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.1e-25  Score=198.86  Aligned_cols=188  Identities=32%  Similarity=0.529  Sum_probs=141.4

Q ss_pred             eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773          2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--   79 (299)
Q Consensus         2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--   79 (299)
                      .|.+|+++|+.|..+++++++++|||||||||||++++++|.+++.+++.+++.++.+.+.++.+..++.+|..|...  
T Consensus        19 ~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~A~~~~p   98 (258)
T d1e32a2          19 MVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAP   98 (258)
T ss_dssp             HHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHHHTTSCTTHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCCeEEEEEchhhcccccccHHHHHHHHHHHHHhcCC
Confidence            366799999999999999999999999999999999999999999999999999999999999999999999998765  


Q ss_pred             ---------HHhhhhcCCCchhhh----HHHhh-----------------cCccchhhcCC-----------CccHHHHH
Q psy13773         80 ---------NFRYAMGKSSPSALR----ETIVE-----------------VPNITWEDIGG-----------LEGVKREL  118 (299)
Q Consensus        80 ---------~~~~~~~~~~~~~~~----~~l~~-----------------l~~~l~~~~~r-----------~p~~~~R~  118 (299)
                               .+...+.........    ..+..                 .++.+++++.|           .|+.++|.
T Consensus        99 ~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~ld~al~r~gRfd~~i~~~~P~~~~R~  178 (258)
T d1e32a2          99 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL  178 (258)
T ss_dssp             EEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGGSCGGGTSTTSSCEEEECCCCCHHHHH
T ss_pred             eEEEehhhhhhccCCCCCCCchHHHHHHHhccccccccccCCccEEEeCCCccccchhhhhcccccceeECCCCCHHHHH
Confidence                     233333222221111    11111                 16777777743           68888888


Q ss_pred             h---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcc
Q psy13773        119 Q---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVP  189 (299)
Q Consensus       119 ~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (299)
                      .         .+..++++..||++|+||||+||+.+|++|++.|++|.....        .....    . .........
T Consensus       179 ~il~~~l~~~~~~~~~~~~~la~~t~G~s~adl~~lv~~A~~~a~~~~~~~~--------~~~~~----~-~~~~~~~~~  245 (258)
T d1e32a2         179 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI--------DLEDE----T-IDAEVMNSL  245 (258)
T ss_dssp             HHHHHTTTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHH--------CCCSS----C-CBHHHHHHC
T ss_pred             HHhhhhccCcccccccchhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcccc--------chhhh----h-hhhhhhccC
Confidence            6         335678999999999999999999999999999998865320        00000    0 000001224


Q ss_pred             cccHHHHHHHHHh
Q psy13773        190 EITRAHFEEAMRF  202 (299)
Q Consensus       190 ~it~~Df~~AL~~  202 (299)
                      +||++||+.||++
T Consensus       246 ~it~~Df~~AL~~  258 (258)
T d1e32a2         246 AVTMDDFRWALSQ  258 (258)
T ss_dssp             CBCHHHHHHHHTC
T ss_pred             ccCHHHHHHHhCc
Confidence            6999999999964

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=3.9e-24  Score=188.64  Aligned_cols=169  Identities=33%  Similarity=0.530  Sum_probs=131.3

Q ss_pred             ccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-----
Q psy13773          5 YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-----   79 (299)
Q Consensus         5 ~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-----   79 (299)
                      .++++|+.|..+++..++++||+||||||||+++++||++++.+++++++.++.+.|+|+++..++.+|+.|...     
T Consensus        29 ~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~A~~~~P~il  108 (256)
T d1lv7a_          29 EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCII  108 (256)
T ss_dssp             HHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEE
T ss_pred             HHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhhhcchhHHHHHHHHHHHHHHHcCCEEE
Confidence            347899999999999999999999999999999999999999999999999999999999999999999988754     


Q ss_pred             ------HHhhhhcCCCch---hh----hHHHhhc-----------------CccchhhcCC-----------CccHHHHH
Q psy13773         80 ------NFRYAMGKSSPS---AL----RETIVEV-----------------PNITWEDIGG-----------LEGVKREL  118 (299)
Q Consensus        80 ------~~~~~~~~~~~~---~~----~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~  118 (299)
                            .++..+......   ..    ..++..+                 ++.+++++.|           .|+.++|.
T Consensus       109 ~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v~vIatTn~~~~ld~al~R~gRfd~~i~i~~P~~~~R~  188 (256)
T d1lv7a_         109 FIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGRE  188 (256)
T ss_dssp             EETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHH
T ss_pred             EEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCcccCCHhHcCCCCCCEEEECCCcCHHHHH
Confidence                  344433322111   11    1222221                 6777777643           68888887


Q ss_pred             h---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcc
Q psy13773        119 Q---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVP  189 (299)
Q Consensus       119 ~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (299)
                      .         .+..++++..+++.|+|||++||..+|++|++.|+++..                              .
T Consensus       189 ~il~~~l~~~~~~~~~~~~~la~~t~G~s~adi~~l~~~A~~~a~~~~~------------------------------~  238 (256)
T d1lv7a_         189 QILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNK------------------------------R  238 (256)
T ss_dssp             HHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC------------------------------S
T ss_pred             HHHHHhccCCCcCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC------------------------------C
Confidence            6         345688999999999999999999999999988876421                              3


Q ss_pred             cccHHHHHHHHHhc
Q psy13773        190 EITRAHFEEAMRFA  203 (299)
Q Consensus       190 ~it~~Df~~AL~~~  203 (299)
                      .|+.+||++|++++
T Consensus       239 ~i~~~d~~~Al~rv  252 (256)
T d1lv7a_         239 VVSMVEFEKAKDKI  252 (256)
T ss_dssp             SBCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHH
Confidence            68999999999886

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=99.89  E-value=1.3e-23  Score=184.29  Aligned_cols=167  Identities=35%  Similarity=0.548  Sum_probs=130.8

Q ss_pred             eccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH----
Q psy13773          4 TYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME----   79 (299)
Q Consensus         4 ~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~----   79 (299)
                      +.++.+|+.|..+++..++++||+||||||||+++++||++++.+++++++.++.++|+|++++.++.+|+.|...    
T Consensus        25 i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~I  104 (247)
T d1ixza_          25 VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI  104 (247)
T ss_dssp             HHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred             HHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhhccccHHHHHHHHHHHHHHHcCCEE
Confidence            4568899999999999999999999999999999999999999999999999999999999999999999988643    


Q ss_pred             -------HHhhhhcCCCc---hhh----hHHHhhc-----------------CccchhhcCC-----------CccHHHH
Q psy13773         80 -------NFRYAMGKSSP---SAL----RETIVEV-----------------PNITWEDIGG-----------LEGVKRE  117 (299)
Q Consensus        80 -------~~~~~~~~~~~---~~~----~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R  117 (299)
                             .++..+.....   ...    ..++..+                 ++.+++++.|           .|+.++|
T Consensus       105 i~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~vivi~tTn~~~~ld~al~R~~Rf~~~i~~~~P~~~eR  184 (247)
T d1ixza_         105 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR  184 (247)
T ss_dssp             EEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHH
T ss_pred             EEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCccccCHhHcCCCCCcEEEEECCcCHHHH
Confidence                   33333322211   111    1122111                 5667776642           6788888


Q ss_pred             Hh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCc
Q psy13773        118 LQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPV  188 (299)
Q Consensus       118 ~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (299)
                      ..         ....+++++.+|++|+||||+|+..+|+.|++.|+++..                              
T Consensus       185 ~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~lv~~A~l~a~~~~~------------------------------  234 (247)
T d1ixza_         185 EQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR------------------------------  234 (247)
T ss_dssp             HHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC------------------------------
T ss_pred             HHHHHHHhcccCCccccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC------------------------------
Confidence            76         345788999999999999999999999999988876531                              


Q ss_pred             ccccHHHHHHHH
Q psy13773        189 PEITRAHFEEAM  200 (299)
Q Consensus       189 ~~it~~Df~~AL  200 (299)
                      ..|+.+||++|+
T Consensus       235 ~~i~~~d~~~A~  246 (247)
T d1ixza_         235 RKITMKDLEEAA  246 (247)
T ss_dssp             SSBCHHHHHHHT
T ss_pred             CCcCHHHHHHhh
Confidence            368999999996

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=9.4e-23  Score=180.63  Aligned_cols=157  Identities=68%  Similarity=1.093  Sum_probs=122.8

Q ss_pred             eeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH---
Q psy13773          3 STYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME---   79 (299)
Q Consensus         3 v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~---   79 (299)
                      |.+|+.+|+.|..+++.+++++|||||||||||+++++||++++.+++++++.++.+.+.++.+..++.+|..|...   
T Consensus        23 i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~f~~A~~~~p~  102 (265)
T d1r7ra3          23 VQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPC  102 (265)
T ss_dssp             THHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHHHTSCTTTHHHHHHHHHHHHHHTCSE
T ss_pred             HHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHhhhccccchHHHHHHHHHHHHhcCCc
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999998765   


Q ss_pred             --------HHhhhhcCCCch---hh----hHHHhhc-----------------CccchhhcCC-----------CccHHH
Q psy13773         80 --------NFRYAMGKSSPS---AL----RETIVEV-----------------PNITWEDIGG-----------LEGVKR  116 (299)
Q Consensus        80 --------~~~~~~~~~~~~---~~----~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~  116 (299)
                              .++..+......   ..    ..++..+                 ++.+++++.|           .|+..+
T Consensus       103 il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~  182 (265)
T d1r7ra3         103 VLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS  182 (265)
T ss_dssp             EEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTTTSCGGGSSTTSEEEEECCCCCCHH
T ss_pred             ceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCchhCCHHHhCCCCccEEEEecchHHHH
Confidence                    222222111110   01    1222222                 6667777643           678888


Q ss_pred             HHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773        117 ELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus       117 R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      |..         ....+++++.|+.+|+|||++||..+|++|.+.|+++...
T Consensus       183 R~~il~~~l~~~~~~~~~~l~~la~~t~g~s~~di~~lv~~A~~~A~~~~~~  234 (265)
T d1r7ra3         183 RVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIE  234 (265)
T ss_dssp             HHHHHHHHTTCC----CCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHhccCCchhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            776         2346788999999999999999999999999999988764

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=7e-16  Score=135.32  Aligned_cols=54  Identities=15%  Similarity=0.132  Sum_probs=50.3

Q ss_pred             CCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773        207 VNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       207 Vsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      |+|+||||++++|++|.+.|.+  |++||++|.. |.....|+|||||||||||+|.
T Consensus         1 ~~~~dv~G~~~~k~~l~~~i~~--~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~   55 (258)
T d1e32a2           1 VGYDDVGGCRKQLAQIKEMVEL--PLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA   55 (258)
T ss_dssp             CCGGGCCSCSHHHHHHHHHHHH--HHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHH
T ss_pred             CChhhhccHHHHHHHHHHHHHH--HhcCHHHHHhCCCCCCceeEEecCCCCCchHHH
Confidence            7999999999999999999999  9999999986 6777789999999999999874

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=9.4e-15  Score=127.86  Aligned_cols=56  Identities=18%  Similarity=0.168  Sum_probs=48.2

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773        204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      ++.|+|+||+|++++|+++.+.|.|   ++||+.|.+ |.+...|+|||||||||||+|-
T Consensus         6 ~~~~t~~Di~Gl~~~k~~l~e~v~~---~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la   62 (256)
T d1lv7a_           6 QIKTTFADVAGCDEAKEEVAELVEY---LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA   62 (256)
T ss_dssp             SSCCCGGGSCSCHHHHHHTHHHHHH---HHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred             CCCCCHHHHhchHHHHHHHHHHHHH---HHCHHHHHHcCCCCCCeEEeeCCCCCCccHHH
Confidence            5779999999999999999999987   899999987 7788889999999999999873

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=1.1e-13  Score=119.34  Aligned_cols=160  Identities=16%  Similarity=0.161  Sum_probs=103.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+..++.+.|.||||||||||+|+|++...+  +.+.+++.++...    ..+.++.+.+   ...+.++.....+ 
T Consensus        24 vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~----~~~~~~~~rr---~ig~VfQ~~~l~~~   96 (240)
T d3dhwc1          24 VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTL----SESELTKARR---QIGMIFQHFNLLSS   96 (240)
T ss_dssp             EEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTT----CHHHHHHHHH---HEEECCSSCCCCTT
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeC----Chhhhhhhhc---cccccccccccCCC
Confidence            5788999999999999999999999999997765  5577788777543    2333333221   1122222222111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+.. +..+..  ....+.++|+..+++.+++... .+.+..||||++|+++.+.++..-               
T Consensus        97 ~tv~eni~~-~l~~~~--~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~---------------  158 (240)
T d3dhwc1          97 RTVFGNVAL-PLELDN--TPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASN---------------  158 (240)
T ss_dssp             SBHHHHHHH-HHHTTT--CCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTC---------------
T ss_pred             ccHHHHHHH-HHHHcC--CCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccC---------------
Confidence            122222211 110000  1123456788899999999554 456689999999999877655431               


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                         |   .-+..+|+....++.+..++.+.|++++
T Consensus       159 ---P---~lLllDEPt~~LD~~~~~~i~~~l~~l~  187 (240)
T d3dhwc1         159 ---P---KVLLCDEATSALDPATTRSILELLKDIN  187 (240)
T ss_dssp             ---C---SEEEEESGGGSSCHHHHHHHHHHHHHHH
T ss_pred             ---C---CeEEeccccccCCHHHhhHHHHHHHHHH
Confidence               1   1355777888888999999998888764

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=99.28  E-value=2.3e-14  Score=124.69  Aligned_cols=56  Identities=18%  Similarity=0.150  Sum_probs=49.1

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773        204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .|+|+|+||+|++++|+.|.+.|.+   +++|++|.. |.+...|+|||||||||||+|.
T Consensus         3 ~p~~~~~di~G~~~~k~~l~~~i~~---l~~~~~~~~~g~~~~~giLl~GppGtGKT~la   59 (247)
T d1ixza_           3 APKVTFKDVAGAEEAKEELKEIVEF---LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA   59 (247)
T ss_dssp             CCSCCGGGCCSCHHHHHHHHHHHHH---HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred             CCCCcHHHHccHHHHHHHHHHHHHH---HHCHHHHHHcCCCCCceEEEecCCCCChhHHH
Confidence            4889999999999999999998865   999998765 5566679999999999999874

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.25  E-value=3.5e-13  Score=115.54  Aligned_cols=163  Identities=13%  Similarity=0.169  Sum_probs=99.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+|+.+.|+||||||||||+++|++...+  +.+.+++.++...    ..+.+..++...  ..+.++.....+.
T Consensus        24 isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~----~~~~~~~~r~~~--ig~v~Q~~~l~~~   97 (230)
T d1l2ta_          24 VNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDL----DDDELTKIRRDK--IGFVFQQFNLIPL   97 (230)
T ss_dssp             EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTC----CHHHHHHHHHHH--EEEECTTCCCCTT
T ss_pred             eEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcC----Chhhcchhhcce--EEEEecchhhCcC
Confidence            5788999999999999999999999999997764  5677888777654    233333332211  1222222221111


Q ss_pred             -hhhHHHhhcCccchh-hcCCCccHHHHHhhhcccCCHH-HH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 -ALRETIVEVPNITWE-DIGGLEGVKRELQELVQDVDLN-YI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        92 -~~~~~l~~l~~~l~~-~~~r~p~~~~R~~~l~~~v~l~-~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                       ...+.+. ++..+.. ......+..+++..+++.+++. .+ ..++..+|||+.|+++.+.++..              
T Consensus        98 ~tv~eni~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~--------------  162 (230)
T d1l2ta_          98 LTALENVE-LPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALAN--------------  162 (230)
T ss_dssp             SCHHHHHH-HHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTT--------------
T ss_pred             ccHHHHHh-HHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhc--------------
Confidence             1111111 1100000 0001123445666777777873 34 45668899999999887654432              


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                          +|.   -+..+|+....++.+.+++.+.|+++.
T Consensus       163 ----~P~---lLllDEPTs~LD~~~~~~i~~~l~~l~  192 (230)
T d1l2ta_         163 ----NPP---IILADQPTGALDSKTGEKIMQLLKKLN  192 (230)
T ss_dssp             ----CCS---EEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred             ----CCC---EEEecCCccccCHHHHHHHHHHHHHHH
Confidence                111   355778888899999999999988863

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=8e-13  Score=113.37  Aligned_cols=154  Identities=14%  Similarity=0.202  Sum_probs=79.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.+.|.||||||||||+|+|++...+  +.+.+++.++.....  ..+.+          .+.++.....+.
T Consensus        19 isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~i----------g~v~Q~~~l~~~   86 (232)
T d2awna2          19 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGV----------GMVFQSYALYPH   86 (232)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCE----------EEECSSCCC---
T ss_pred             eEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCch--hhcee----------eeeccccccccc
Confidence            5788999999999999999999999999998765  556777777643211  11111          111111111111


Q ss_pred             -hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         92 -ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        92 -~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                       ...+.+. ++..+.  -....+.++|+..+++.+++... .+++..||||+.|+++.+.++..                
T Consensus        87 ~tv~eni~-~~~~~~--~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~----------------  147 (232)
T d2awna2          87 LSVAENMS-FGLKLA--GAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA----------------  147 (232)
T ss_dssp             ---------------------CHHHHHHHHHHHHC---------------------CHHHHHHT----------------
T ss_pred             hhHHHHHH-HHHHHc--CCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhc----------------
Confidence             1111111 110000  01134566788899999999655 56678999999999987665442                


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                        +|   .-+..+|+....++.+..++.+.|.+.
T Consensus       148 --~P---~illlDEPts~LD~~~~~~i~~~l~~l  176 (232)
T d2awna2         148 --EP---SVFLLDEPLSNLDAALRVQMRIEISRL  176 (232)
T ss_dssp             --CC---SEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred             --CC---CEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence              11   135577888888899999888888775

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=1.5e-14  Score=127.09  Aligned_cols=56  Identities=20%  Similarity=0.167  Sum_probs=51.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773        205 RSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       205 PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      |+++|+||+|++++|+.|.+.|.+  |+++|+.|.+ |.....|||||||||||||+|.
T Consensus         2 p~~~f~di~G~~~~k~~l~~~i~~--~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~   58 (265)
T d1r7ra3           2 PQVTWEDIGGLEDVKRELQELVQY--PVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA   58 (265)
T ss_dssp             CCCSCSSCSSSSCCCCHHHHHTHH--HHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHH
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHH--HhhCHHHHHhCCCCCCCeEEEECCCCCcchhHH
Confidence            889999999999999999999999  9999998865 6677779999999999999983

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.16  E-value=4.4e-13  Score=115.56  Aligned_cols=157  Identities=13%  Similarity=0.200  Sum_probs=97.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhhcccccc----HHHHHHHHHHHHHHHHhhhhcC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGES----EANVRDIFDKVTMENFRYAMGK   87 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~----~~~i~~~f~~a~~~~~~~~~~~   87 (299)
                      ++|.+.+++.+.|.||||||||||+|+|++...+  +.+.+++.++........    .+.+.          +.++...
T Consensus        22 vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig----------~v~Q~~~   91 (240)
T d1g2912          22 MSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIA----------MVFQSYA   91 (240)
T ss_dssp             EEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEE----------EECSCCC
T ss_pred             eeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccce----------ecccchh
Confidence            6788999999999999999999999999998765  557777776643211110    01111          1111111


Q ss_pred             CCch-hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         88 SSPS-ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRE  165 (299)
Q Consensus        88 ~~~~-~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~  165 (299)
                      ..+. +..+.+.. +..+..  ....+.++|+..+++.+++..+ .+++..||||+.|+++.+.++..-           
T Consensus        92 L~~~ltV~eni~~-~~~~~~--~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~-----------  157 (240)
T d1g2912          92 LYPHMTVYDNIAF-PLKLRK--VPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRK-----------  157 (240)
T ss_dssp             CCTTSCHHHHHHH-HHHHTT--CCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTC-----------
T ss_pred             hcchhhhhHhhhh-hHHHcC--CCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcC-----------
Confidence            1111 11111111 100000  1123445678888898988655 456688999999999876654431           


Q ss_pred             HHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        166 REKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                             |   .-+..+|+....++.+..++.+.|++++
T Consensus       158 -------P---~iLllDEPt~~LD~~~~~~i~~~l~~l~  186 (240)
T d1g2912         158 -------P---QVFLMDEPLSNLDAKLRVRMRAELKKLQ  186 (240)
T ss_dssp             -------C---SEEEEECTTTTSCHHHHHHHHHHHHHHH
T ss_pred             -------C---CEEEecCCCcccCHHHHHHHHHHHHHHH
Confidence                   1   1355777888888999999998887763

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.15  E-value=9.1e-13  Score=113.43  Aligned_cols=155  Identities=14%  Similarity=0.216  Sum_probs=98.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.+.|+||||||||||+|+|++...+  +.+.+++.++.....  ..+.+..+|+.          ...-+ 
T Consensus        25 vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig~v~Q~----------~~l~~~   92 (239)
T d1v43a3          25 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP--KDRNISMVFQS----------YAVWPH   92 (239)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG--GGGTEEEEEC----------------C
T ss_pred             eeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCc--ccceEEEEeec----------hhhccc
Confidence            5788999999999999999999999999998765  557778877754211  11112222221          11111 


Q ss_pred             hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                      ....+.+. +...+..  ....+.++|+..+++.+++... .+++..||||++|+++.+.++..                
T Consensus        93 ltv~enl~-~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~----------------  153 (239)
T d1v43a3          93 MTVYENIA-FPLKIKK--FPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV----------------  153 (239)
T ss_dssp             CCHHHHHH-TTCC--C--CCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTT----------------
T ss_pred             chHHHHHH-HHHHHcC--CCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhcc----------------
Confidence            11112221 1111100  1123456778889999999655 56678999999999887654432                


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                        +|   .-+..+|+....++.+.+++.+.+.+++
T Consensus       154 --~P---~iLllDEPts~LD~~~~~~i~~ll~~l~  183 (239)
T d1v43a3         154 --EP---DVLLMDEPLSNLDAKLRVAMRAEIKKLQ  183 (239)
T ss_dssp             --CC---SEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred             --CC---CceeecCCcccCCHHHHHHHHHHHHHHH
Confidence              11   1355778888889999999988888763

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.14  E-value=1.4e-12  Score=112.34  Aligned_cols=157  Identities=13%  Similarity=0.173  Sum_probs=99.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhhccccc---cHHHHHHHHHHHHHHHHhhhhcCC
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGE---SEANVRDIFDKVTMENFRYAMGKS   88 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~---~~~~i~~~f~~a~~~~~~~~~~~~   88 (299)
                      ++|.+.+++.+.|.||||||||||+|+|++...+  +.+.+++.++.......   ..+.+..+|          +....
T Consensus        24 vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vf----------Q~~~L   93 (242)
T d1oxxk2          24 VNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVF----------QTWAL   93 (242)
T ss_dssp             EEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEE----------TTSCC
T ss_pred             eEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEe----------ccccc
Confidence            6788999999999999999999999999997664  55777877764321100   011111111          11111


Q ss_pred             Cch-hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         89 SPS-ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRER  166 (299)
Q Consensus        89 ~~~-~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~  166 (299)
                      .+. +..+.+.. +-...  -....+.++|+..+++.+++... .+++..||||++|+++.+.++..             
T Consensus        94 ~p~ltv~eni~~-~l~~~--~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~-------------  157 (242)
T d1oxxk2          94 YPNLTAFENIAF-PLTNM--KMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVK-------------  157 (242)
T ss_dssp             CTTSCHHHHHHG-GGTTS--SCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT-------------
T ss_pred             cccccHHHHhhh-hhHhh--cCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhh-------------
Confidence            111 11222211 10000  01123456788899999999665 46668899999999987654432             


Q ss_pred             HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                           +|.   -+..+|+....++.+...+.+.+++.+
T Consensus       158 -----~P~---llllDEPt~~LD~~~~~~i~~~i~~l~  187 (242)
T d1oxxk2         158 -----DPS---LLLLDEPFSNLDARMRDSARALVKEVQ  187 (242)
T ss_dssp             -----CCS---EEEEESTTTTSCGGGHHHHHHHHHHHH
T ss_pred             -----ccc---ceeecCCccCCCHHHHHHHHHHHHHHH
Confidence                 111   355678888889999999999887763

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.10  E-value=1.8e-12  Score=110.80  Aligned_cols=152  Identities=14%  Similarity=0.250  Sum_probs=96.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.+.|.||||||||||+|+|++...+  +.+.+++.++.....  ..+.+          .+.++....-+.
T Consensus        19 vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~--~~r~i----------g~v~Q~~~l~~~   86 (229)
T d3d31a2          19 LSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDI----------AFVYQNYSLFPH   86 (229)
T ss_dssp             EEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTC----------EEECTTCCCCTT
T ss_pred             eEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccch--hHhcc----------eeeccccccCcc
Confidence            5788999999999999999999999999998765  567788877743210  01111          222221111111


Q ss_pred             -hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         92 -ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        92 -~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                       +..+.+.. ..    .....+ ..+|+..+++.+++..+ .+++..||||++|+++.+.++..                
T Consensus        87 ~tV~enl~~-~~----~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~----------------  144 (229)
T d3d31a2          87 MNVKKNLEF-GM----RMKKIK-DPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVT----------------  144 (229)
T ss_dssp             SCHHHHHHH-HH----HHHCCC-CHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTS----------------
T ss_pred             ccHHHHHHH-HH----hhcccc-HHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhc----------------
Confidence             11122110 00    011222 24577778888888554 45668899999999887653322                


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                        +|   .-+..+|+....++.+..++.+.+++++
T Consensus       145 --~P---~iLllDEPts~LD~~~~~~i~~~l~~l~  174 (229)
T d3d31a2         145 --NP---KILLLDEPLSALDPRTQENAREMLSVLH  174 (229)
T ss_dssp             --CC---SEEEEESSSTTSCHHHHHHHHHHHHHHH
T ss_pred             --cC---CceeecCCCcCCCHHHHHHHHHHHHHHH
Confidence              11   1355778888888999999998887763

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=99.10  E-value=2.1e-11  Score=109.18  Aligned_cols=75  Identities=20%  Similarity=0.156  Sum_probs=66.8

Q ss_pred             ccCcChhhhhcCCCCCCcEEEE-EcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHH
Q psy13773          5 YPVEHPEKFLKFGMQPSRGVLF-YGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTME   79 (299)
Q Consensus         5 ~pl~~p~~~~sl~i~~~~~vLL-~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~   79 (299)
                      +|...|.++..++...+++++| +||||||||.++++||.+++  .+++.+++.++.++|.|+.++.++.+|+.++..
T Consensus       106 ~~~~~~~~~~~~~~~~~~g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~~~G~~e~~~~~~f~~a~~~  183 (321)
T d1w44a_         106 LVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQH  183 (321)
T ss_dssp             CCSBCCEEEEETTEEEESEEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHC
T ss_pred             ccccchHHHHHhhcccCCceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhcccchHHHHHHHHHHHHhhc
Confidence            5667889999998888888776 79999999999999999987  568899999999999999999999999988753

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.08  E-value=1.4e-11  Score=107.41  Aligned_cols=165  Identities=10%  Similarity=0.075  Sum_probs=98.3

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhhccccc------cHHHHHHHHHHHHHHHHhhhh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGE------SEANVRDIFDKVTMENFRYAM   85 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~------~~~~i~~~f~~a~~~~~~~~~   85 (299)
                      ++|.+.+++.+.|+||||||||||+++|++...+  +.+.+++.++......+      .....+....   ...+.++.
T Consensus        21 vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~---~ig~vfQ~   97 (258)
T d1b0ua_          21 VSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRT---RLTMVFQH   97 (258)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHH---HEEEECSS
T ss_pred             eeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhc---ceEEEEec
Confidence            6788999999999999999999999999997764  55777887775432211      1111111111   11122221


Q ss_pred             cCCCch-hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-H-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         86 GKSSPS-ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-I-AKVTNGFSGADLTEICQRACKLAIRQSIETEI  162 (299)
Q Consensus        86 ~~~~~~-~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~  162 (299)
                      ....+. ...+.+...+.  ........+..+|+..+++.+++.. . .+.+..||||++|+++.+.++..-.       
T Consensus        98 ~~l~~~~tv~env~~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P-------  168 (258)
T d1b0ua_          98 FNLWSHMTVLENVMEAPI--QVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEP-------  168 (258)
T ss_dssp             CCCCTTSCHHHHHHHHHH--HTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCC-------
T ss_pred             hhhccchhcchhhhhhHH--HhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCC-------
Confidence            111111 11122111000  0000112345667778888888843 3 3456889999999998766554311       


Q ss_pred             HHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        163 RREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                    ..+..+|+....++.+...+.+.|++.+
T Consensus       169 --------------~llilDEPT~gLD~~~~~~i~~ll~~l~  196 (258)
T d1b0ua_         169 --------------DVLLFDEPTSALDPELVGEVLRIMQQLA  196 (258)
T ss_dssp             --------------SEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred             --------------CEEEeccccccCCHHHHHHHHHhhhhhc
Confidence                          1345677777888888888888877765

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.06  E-value=1.1e-11  Score=106.61  Aligned_cols=152  Identities=15%  Similarity=0.234  Sum_probs=95.2

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+. ++.+.|+||||||||||+|+|++.+.+  +.+.+++.++......  .+.+          .+.++.....+.
T Consensus        18 vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~i----------g~v~Q~~~l~~~   84 (240)
T d2onka1          18 VDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGI----------GFVPQDYALFPH   84 (240)
T ss_dssp             EEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCC----------BCCCSSCCCCTT
T ss_pred             EEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCc----------eeeccchhhccc
Confidence            344443 468889999999999999999998865  5577788877543211  1111          122221111111


Q ss_pred             -hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         92 -ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        92 -~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                       +..+.+. ++  +.  .....+.++|+..+++.+++..+ .+++..||||+.|+++.+.++..-               
T Consensus        85 ltV~enl~-~~--l~--~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~---------------  144 (240)
T d2onka1          85 LSVYRNIA-YG--LR--NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQ---------------  144 (240)
T ss_dssp             SCHHHHHH-TT--CT--TSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTC---------------
T ss_pred             chhhHhhh-hh--hc--ccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhcc---------------
Confidence             1222221 11  10  01123456788899999999654 466689999999999876544321               


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                         |   .-+..+|+....++.+...+.+.+++++
T Consensus       145 ---P---~illlDEPts~LD~~~~~~i~~~i~~l~  173 (240)
T d2onka1         145 ---P---RLLLLDEPLSAVDLKTKGVLMEELRFVQ  173 (240)
T ss_dssp             ---C---SSBEEESTTSSCCHHHHHHHHHHHHHHH
T ss_pred             ---C---CceEecCccccCCHHHHHHHHHHHHHHH
Confidence               1   1355677888888888898888887763

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.01  E-value=1.1e-10  Score=101.26  Aligned_cols=152  Identities=14%  Similarity=0.182  Sum_probs=88.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.++|+||+|||||||+++|++...+  +.+.+++.++...    ....++.   .   ..+.++....-..
T Consensus        34 isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~----~~~~~r~---~---i~~v~Q~~~l~~~  103 (253)
T d3b60a1          34 INLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREY----TLASLRN---Q---VALVSQNVHLFND  103 (253)
T ss_dssp             EEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTB----CHHHHHH---T---EEEECSSCCCCSS
T ss_pred             eEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchh----hhhhhhh---e---EEEEeeccccCCc
Confidence            6778899999999999999999999999998765  5677787776543    1111111   0   0122221111111


Q ss_pred             hhhHHHhhcCccchhhcCCCc-cHHHHHhhhcccCCH-HHH-----------HHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLE-GVKRELQELVQDVDL-NYI-----------AKVTNGFSGADLTEICQRACKLAIRQSI  158 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p-~~~~R~~~l~~~v~l-~~L-----------A~~t~glSggDl~~Lv~~A~~~a~~r~~  158 (299)
                      .....+.-         .+.. ...+++...++...+ +.+           ......||||+.|+|+.+.++..-.   
T Consensus       104 ti~~n~~~---------~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p---  171 (253)
T d3b60a1         104 TVANNIAY---------ARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDS---  171 (253)
T ss_dssp             BHHHHHHT---------TTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCC---
T ss_pred             chhhhhhh---------cCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCC---
Confidence            12111110         0000 012222222222222 112           2334569999999998766554311   


Q ss_pred             HHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773        159 ETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P  205 (299)
                                        .-+..+|+....++.+...+.++|++.+.
T Consensus       172 ------------------~ililDEpts~LD~~~~~~i~~~l~~l~~  200 (253)
T d3b60a1         172 ------------------PILILDEATSALDTESERAIQAALDELQK  200 (253)
T ss_dssp             ------------------SEEEEETTTSSCCHHHHHHHHHHHHHHHT
T ss_pred             ------------------CEEEeccccccCCHHHHHHHHHHHHHhcc
Confidence                              12456788888889999999999987643

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=98.96  E-value=2.8e-11  Score=104.18  Aligned_cols=156  Identities=11%  Similarity=0.131  Sum_probs=94.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCC--eecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~--~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.+.|+||||||||||+++|++.+.+.  .+.+++.++...     ...++.      ...+.++.......
T Consensus        21 vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-----~~~~~~------~i~~vpq~~~~~~~   89 (238)
T d1vpla_          21 ISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-----PHEVRK------LISYLPEEAGAYRN   89 (238)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-----HHHHHT------TEEEECTTCCCCTT
T ss_pred             ceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccC-----hHHHHh------hEeEeeeccccCCC
Confidence            57888999999999999999999999999988764  466677665432     111111      01222222211111


Q ss_pred             -hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773         92 -ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL  169 (299)
Q Consensus        92 -~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~  169 (299)
                       ...+.+.... .+..  ....+..++++.+++.+++... .++...||||++|+++...++..-.              
T Consensus        90 ltv~e~l~~~~-~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p--------------  152 (238)
T d1vpla_          90 MQGIEYLRFVA-GFYA--SSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNP--------------  152 (238)
T ss_dssp             SBHHHHHHHHH-HHHC--CCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCC--------------
T ss_pred             ccHHHHHHHHH-HhcC--CCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCC--------------
Confidence             1112221110 0000  1122344556666666777544 4556789999999998765443311              


Q ss_pred             cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                             .-+..+|+....++.+...+.+.+++.+
T Consensus       153 -------~illLDEPt~gLD~~~~~~i~~~i~~~~  180 (238)
T d1vpla_         153 -------RLAILDEPTSGLDVLNAREVRKILKQAS  180 (238)
T ss_dssp             -------SEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred             -------CEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence                   1245677788888888888888887764

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=3.2e-11  Score=104.00  Aligned_cols=152  Identities=12%  Similarity=0.134  Sum_probs=88.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.++|+||+|||||||+++|++.+.+  +.+.+++.++...    ....++.      ...+.++....-..
T Consensus        22 isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~----~~~~lr~------~i~~v~Q~~~lf~~   91 (241)
T d2pmka1          22 INLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALA----DPNWLRR------QVGVVLQDNVLLNR   91 (241)
T ss_dssp             EEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTS----CHHHHHH------HEEEECSSCCCTTS
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEeccc----chhhhhc------eEEEEecccccCCc
Confidence            6778899999999999999999999999998765  5677888777543    2222221      11222221111111


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhh---------cccC--CHH-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQEL---------VQDV--DLN-YIAKVTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l---------~~~v--~l~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      +.++.+.-...        ..+ .++....         ....  +++ .+......||||+.|+++.+.++..-     
T Consensus        92 Ti~eNi~~~~~--------~~~-~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~-----  157 (241)
T d2pmka1          92 SIIDNISLANP--------GMS-VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN-----  157 (241)
T ss_dssp             BHHHHHCTTST--------TCC-HHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTC-----
T ss_pred             cccccccccCc--------ccc-HHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcc-----
Confidence            22222211000        001 1111111         1111  111 12334568999999999876644321     


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P  205 (299)
                                   +   .-+..+|+....++.+...+.++|++..+
T Consensus       158 -------------p---~ililDEpts~LD~~~~~~i~~~l~~l~~  187 (241)
T d2pmka1         158 -------------P---KILIFDEATSALDYESEHVIMRNMHKICK  187 (241)
T ss_dssp             -------------C---SEEEECCCCSCCCHHHHHHHHHHHHHHHT
T ss_pred             -------------c---chhhhhCCccccCHHHHHHHHHHHHHHhC
Confidence                         1   12457778888899999999999887643

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.95  E-value=2.3e-11  Score=105.85  Aligned_cols=159  Identities=12%  Similarity=0.139  Sum_probs=95.5

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-   90 (299)
                      ++|.+.+++.+.|+||||||||||+|+|++...+  +.+.+++.++.....    ...   .+   . .+....+.... 
T Consensus        23 vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~----~~~---~~---~-gi~~v~Q~~~~~   91 (254)
T d1g6ha_          23 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEP----AEL---YH---Y-GIVRTFQTPQPL   91 (254)
T ss_dssp             ECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCH----HHH---HH---H-TEEECCCCCGGG
T ss_pred             eEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhH----HHH---HH---h-cCCccCCccccC
Confidence            6788999999999999999999999999998765  567788887754421    111   11   0 11111111100 


Q ss_pred             --hhhhHHHh--hcCc---cchhhc--C---CCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy13773         91 --SALRETIV--EVPN---ITWEDI--G---GLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQS  157 (299)
Q Consensus        91 --~~~~~~l~--~l~~---~l~~~~--~---r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~  157 (299)
                        ....+.+.  .+..   .....+  .   +.....+|+..+++.+++..++ +....||||++|+++...++..-   
T Consensus        92 ~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~~---  168 (254)
T d1g6ha_          92 KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTN---  168 (254)
T ss_dssp             GGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTC---
T ss_pred             CCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHHHhC---
Confidence              01111111  0000   000000  1   1223345666777778876655 45678999999999876544321   


Q ss_pred             HHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        158 IETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                     |   ..+..+|+....++.+.+++.+.+++++
T Consensus       169 ---------------P---~llilDEPt~gLD~~~~~~i~~~i~~l~  197 (254)
T d1g6ha_         169 ---------------P---KMIVMDEPIAGVAPGLAHDIFNHVLELK  197 (254)
T ss_dssp             ---------------C---SEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred             ---------------c---CchhhcCCcccCCHHHHHHHHHHHHHHH
Confidence                           1   1355677778888888888888887764

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.95  E-value=1.6e-10  Score=100.21  Aligned_cols=152  Identities=14%  Similarity=0.188  Sum_probs=89.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+++++.++|+||+|||||||+++|++...+  +.+.+++.++...    ....++..      ..+.++....-..
T Consensus        37 isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~----~~~~lr~~------i~~v~Q~~~lf~~  106 (255)
T d2hyda1          37 INLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDF----LTGSLRNQ------IGLVQQDNILFSD  106 (255)
T ss_dssp             EEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGS----CHHHHHHT------EEEECSSCCCCSS
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccC----CHHHhhhe------eeeeeccccCCCC
Confidence            5678899999999999999999999999998775  5577787777543    11222210      0122221111122


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH------------HHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY------------IAKVTNGFSGADLTEICQRACKLAIRQSIE  159 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~------------LA~~t~glSggDl~~Lv~~A~~~a~~r~~~  159 (299)
                      +.++.+.-         .+.....+++...++.+++.+            +......||||+.|+++.+.++..-.    
T Consensus       107 Ti~eNi~~---------g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p----  173 (255)
T d2hyda1         107 TVKENILL---------GRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNP----  173 (255)
T ss_dssp             BHHHHHGG---------GCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCC----
T ss_pred             CHHHHHhc---------cCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCC----
Confidence            22232211         000001222222333333311            22344579999999999876554311    


Q ss_pred             HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773        160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P  205 (299)
                                       .-+..+|+....++.|...+.++|++..+
T Consensus       174 -----------------~ililDEpts~LD~~t~~~i~~~l~~l~~  202 (255)
T d2hyda1         174 -----------------PILILDEATSALDLESESIIQEALDVLSK  202 (255)
T ss_dssp             -----------------SEEEEESTTTTCCHHHHHHHHHHHHHHTT
T ss_pred             -----------------CEEEEeCccccCCHHHHHHHHHHHHHHhc
Confidence                             12446778888888999999999987754

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=98.94  E-value=4.9e-11  Score=102.77  Aligned_cols=156  Identities=17%  Similarity=0.180  Sum_probs=92.1

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHH-HHHhhhhcCCCc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTM-ENFRYAMGKSSP   90 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~-~~~~~~~~~~~~   90 (299)
                      ++|.+.+++.+.|.||||||||||+|+|++.+.+  +.+.+++.++....    ....      ++. ..+.++....-+
T Consensus        25 vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~----~~~~------~r~gi~~~~q~~~l~~   94 (240)
T d1ji0a_          25 IDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKP----AHVI------NRMGIALVPEGRRIFP   94 (240)
T ss_dssp             EEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC----HHHH------HHTTEEEECSSCCCCT
T ss_pred             eeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEeccccccccc----HHHH------HHhcccccCcccccCC
Confidence            6788999999999999999999999999998765  56778888775431    1111      111 012222111111


Q ss_pred             h-hhhHHHhhcCccchhhcCCCccHHHHHhhhcccC-CHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         91 S-ALRETIVEVPNITWEDIGGLEGVKRELQELVQDV-DLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE  167 (299)
Q Consensus        91 ~-~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v-~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~  167 (299)
                      . ...+.+.....    .........++.+.+...+ .+...+ +....||||++|+++...++..-             
T Consensus        95 ~ltv~en~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~-------------  157 (240)
T d1ji0a_          95 ELTVYENLMMGAY----NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSR-------------  157 (240)
T ss_dssp             TSBHHHHHHGGGT----TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTC-------------
T ss_pred             cccHHHHHHHHHH----hcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhC-------------
Confidence            1 11122211000    0011223344444444444 354444 44578999999999876544321             


Q ss_pred             HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                           |   .-+..+|+....++.+...+.+.+++.+
T Consensus       158 -----P---~lLllDEPt~gLD~~~~~~i~~~i~~l~  186 (240)
T d1ji0a_         158 -----P---KLLMMDEPSLGLAPILVSEVFEVIQKIN  186 (240)
T ss_dssp             -----C---SEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred             -----C---CEeeecCCCcCCCHHHHHHHHHHHHHHH
Confidence                 1   1355677888888888888888888764

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.92  E-value=4.8e-11  Score=100.11  Aligned_cols=149  Identities=16%  Similarity=0.167  Sum_probs=83.8

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+++|+.++|+||||||||||+++|++.+.+  +.+.+++.++....     ..          ..+.++.......
T Consensus        20 is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~-----~~----------i~~~~~~~~~~~~   84 (200)
T d1sgwa_          20 ITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVK-----GK----------IFFLPEEIIVPRK   84 (200)
T ss_dssp             EEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGG-----GG----------EEEECSSCCCCTT
T ss_pred             eEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhc-----Cc----------EEEEeecccCCCC
Confidence            5678899999999999999999999999998765  44556665553210     00          0011111000010


Q ss_pred             -hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13773         92 -ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLA  170 (299)
Q Consensus        92 -~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~  170 (299)
                       ...+.+....     .+......+.++...++.+++..+.++...||+|++|++....++..-                
T Consensus        85 ~t~~~~l~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~----------------  143 (200)
T d1sgwa_          85 ISVEDYLKAVA-----SLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVN----------------  143 (200)
T ss_dssp             SBHHHHHHHHH-----HHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSC----------------
T ss_pred             cCHHHHHHHHH-----HhcCCccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcC----------------
Confidence             1111111100     001111112233333344443334456667999999998876544321                


Q ss_pred             CCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773        171 GNPAASAAMETEDEDDPVPEITRAHFEEAMRFA  203 (299)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~  203 (299)
                        +   .-+..+|+....++-+...+.+.+.+.
T Consensus       144 --~---~llllDEPt~gLD~~~~~~i~~~l~~~  171 (200)
T d1sgwa_         144 --A---EIYVLDDPVVAIDEDSKHKVLKSILEI  171 (200)
T ss_dssp             --C---SEEEEESTTTTSCTTTHHHHHHHHHHH
T ss_pred             --C---CEEEEcCcccccCHHHHHHHHHHHHHH
Confidence              1   124466777788888888888887665

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=4.4e-10  Score=97.28  Aligned_cols=153  Identities=14%  Similarity=0.187  Sum_probs=87.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+++++.++|+||+|||||||+++|++.+.+  +.+.+++.++...    ..+.++.      ...+.++....-..
T Consensus        33 isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~----~~~~~r~------~i~~v~Q~~~lf~~  102 (251)
T d1jj7a_          33 LTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQY----EHRYLHR------QVAAVGQEPQVFGR  102 (251)
T ss_dssp             EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGB----CHHHHHH------HEEEECSSCCCCSS
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchh----hhHHHHH------HhhhccccccccCc
Confidence            5678899999999999999999999999998865  5677888877543    1122211      11222221111112


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHh--------hhcccC--CHH-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQ--------ELVQDV--DLN-YIAKVTNGFSGADLTEICQRACKLAIRQSIET  160 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~--------~l~~~v--~l~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~  160 (299)
                      +.++.+.. ..      ...+.......        .....+  .++ .+......||||++|+++.+.++..-      
T Consensus       103 tv~eni~~-g~------~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~------  169 (251)
T d1jj7a_         103 SLQENIAY-GL------TQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRK------  169 (251)
T ss_dssp             BHHHHHHC-SC------SSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTC------
T ss_pred             chhhhhhh-hh------cccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccC------
Confidence            22222211 00      00111111100        111111  111 12344567999999999876654321      


Q ss_pred             HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                                  +   .-+..+|+....++.+...+.+.|.+..
T Consensus       170 ------------p---~ililDEpTs~LD~~~~~~i~~~l~~l~  198 (251)
T d1jj7a_         170 ------------P---CVLILDDATSALDANSQLQVEQLLYESP  198 (251)
T ss_dssp             ------------C---SEEEEESTTTTCCHHHHHHHHHHHHTCG
T ss_pred             ------------C---cEEEecCcCcccChhhHHHHHHHHHHHh
Confidence                        1   1255677888888889999999887764

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.90  E-value=6.9e-10  Score=95.80  Aligned_cols=63  Identities=32%  Similarity=0.471  Sum_probs=52.2

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhcccccc-HHHHHHHHHHHHHH
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES-EANVRDIFDKVTME   79 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~-~~~i~~~f~~a~~~   79 (299)
                      ...++.+|||+||||||||+++++||++++.+++.+++.++...+.+.. ...++.+|..|...
T Consensus        36 ~~~p~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~g~~~~~~~~~i~~if~~A~~~   99 (246)
T d1d2na_          36 DRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKS   99 (246)
T ss_dssp             SSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             CCCCCeEEEEECcCCCCHHHHHHHHhhcccccccccccccccccccccchhhhhhhhhhhhhhc
Confidence            4457789999999999999999999999999999999887765554443 46689999988753

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=98.90  E-value=1.1e-10  Score=100.70  Aligned_cols=155  Identities=14%  Similarity=0.187  Sum_probs=87.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~   91 (299)
                      ++|.+.+++.++|+||+|||||||+++|++.+.+  +.+.+++.++.........+.+          .+.++....-..
T Consensus        21 isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i----------~~v~Q~~~lf~~   90 (242)
T d1mv5a_          21 ISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQI----------GFVSQDSAIMAG   90 (242)
T ss_dssp             EEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTC----------CEECCSSCCCCE
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhhe----------EEEccccccCCc
Confidence            6778899999999999999999999999998764  6677888777543222111111          111111111111


Q ss_pred             hhhHHHhhcCccchhhcCCCcc-HHHHHhh---hcccCC-----H-HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773         92 ALRETIVEVPNITWEDIGGLEG-VKRELQE---LVQDVD-----L-NYIAKVTNGFSGADLTEICQRACKLAIRQSIETE  161 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~-~~~R~~~---l~~~v~-----l-~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~  161 (299)
                      +.++.+...   ..   ....+ ...+...   +...+.     + ..+......||||+.|+++.+.++..-.      
T Consensus        91 ti~eNi~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p------  158 (242)
T d1mv5a_          91 TIRENLTYG---LE---GDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP------  158 (242)
T ss_dssp             EHHHHTTSC---TT---SCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC------
T ss_pred             chhhheecc---cc---cccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCC------
Confidence            222221100   00   00011 1111111   111110     1 1123344579999999999876554311      


Q ss_pred             HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773        162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR  205 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P  205 (299)
                                     .-+..+|+....++.+...+.+.|++...
T Consensus       159 ---------------~ililDEpts~LD~~~~~~i~~~l~~l~~  187 (242)
T d1mv5a_         159 ---------------KILMLDEATASLDSESESMVQKALDSLMK  187 (242)
T ss_dssp             ---------------SEEEEECCSCSSCSSSCCHHHHHHHHHHT
T ss_pred             ---------------CEEEecCCccccCHHHHHHHHHHHHHHcC
Confidence                           12557788888889999999999988754

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=2.4e-10  Score=97.79  Aligned_cols=159  Identities=15%  Similarity=0.195  Sum_probs=93.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC-ch
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-PS   91 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-~~   91 (299)
                      ++|.+.+|+.+.|.||||||||||+++|++... .+.+.+++.++...    ....+..      ...+........ ..
T Consensus        18 isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~~~G~I~~~g~~i~~~----~~~~~~~------~~~~~~~~~~~~~~~   87 (231)
T d1l7vc_          18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAW----SATKLAL------HRAYLSQQQTPPFAT   87 (231)
T ss_dssp             EEEEEETTCEEECBCCTTSSHHHHHHHHHTSCCCSSEEEESSSBGGGS----CHHHHHH------HEEEECSCCCCCSSC
T ss_pred             EEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCceEEEECCEECCcC----CHHHHHh------hceeeeccccCCccc
Confidence            678899999999999999999999999999543 35677777766442    1111111      001111111100 01


Q ss_pred             hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13773         92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-YIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLA  170 (299)
Q Consensus        92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~  170 (299)
                      .....+..        ........+++..+...+++. .+.+....||||+.|+++...++..+...             
T Consensus        88 ~v~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~-------------  146 (231)
T d1l7vc_          88 PVWHYLTL--------HQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQ-------------  146 (231)
T ss_dssp             BHHHHHHH--------HCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTT-------------
T ss_pred             cHHHHhhh--------ccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcc-------------
Confidence            11111110        011123345566666666664 34566678999999999877655332110             


Q ss_pred             CCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773        171 GNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR  204 (299)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~  204 (299)
                      .++. ..-+..+|+....++.....+.+.+++.+
T Consensus       147 ~~p~-p~llllDEPt~gLD~~~~~~i~~~i~~l~  179 (231)
T d1l7vc_         147 ANPA-GQLLLLDEPMNSLDVAQQSALDKILSALC  179 (231)
T ss_dssp             TCTT-CCEEEESSCSTTCCHHHHHHHHHHHHHHH
T ss_pred             cCCC-CCEEEEcCCCCCCCHHHHHHHHHHHHHHH
Confidence            0010 12355778888888888888988888775

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.79  E-value=1.9e-09  Score=96.03  Aligned_cols=58  Identities=29%  Similarity=0.482  Sum_probs=52.6

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhh--hccccccHHHHHHHHHHHH
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL--TMWFGESEANVRDIFDKVT   77 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~--~~~~g~~~~~i~~~f~~a~   77 (299)
                      ++.++||+||||||||+|+|+||+.++.+++.+++.++.  +.+.+..+..++.+|..+.
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~f~~a~  107 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAG  107 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTT
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccccchhcccccccccceeEeeeccccccccchhhh
Confidence            678999999999999999999999999999999999987  4578888999999998764

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.62  E-value=5.1e-08  Score=82.48  Aligned_cols=37  Identities=51%  Similarity=0.705  Sum_probs=32.5

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL   57 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l   57 (299)
                      ...+||||||||||||++++||.+++..++.+++.+.
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~~~~~~~   71 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL   71 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTC
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhccCCCcccccCccc
Confidence            4579999999999999999999999998888776554

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=98.60  E-value=4.1e-09  Score=95.81  Aligned_cols=43  Identities=33%  Similarity=0.392  Sum_probs=38.7

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhh
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT   59 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~   59 (299)
                      +++.+++++|+||||||||+++++||+.++..++++++++..+
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~in~s~~rs  192 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRL  192 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTH
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEECcchhh
Confidence            6677889999999999999999999999999999998876644

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=1.1e-08  Score=89.86  Aligned_cols=41  Identities=27%  Similarity=0.375  Sum_probs=34.9

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCe--ecccc
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANF--ISVKG   54 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~--i~i~~   54 (299)
                      ++|.+.+++.++|+||+|||||||+++|++.+.+..  +.+++
T Consensus        55 isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g   97 (281)
T d1r0wa_          55 INLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG   97 (281)
T ss_dssp             EEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS
T ss_pred             eEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC
Confidence            577889999999999999999999999999887644  44554

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.56  E-value=1.9e-08  Score=86.29  Aligned_cols=43  Identities=33%  Similarity=0.487  Sum_probs=38.4

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhh
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT   59 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~   59 (299)
                      +...|++++|+|||||||||++++||.+++.+++.+++.++..
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~   70 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ   70 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHH
Confidence            4567889999999999999999999999999999999877654

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=98.53  E-value=3.1e-09  Score=90.45  Aligned_cols=50  Identities=14%  Similarity=-0.074  Sum_probs=40.2

Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        203 ARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       203 ~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      +|| .+|+||-|.+++++++.+.+.+  ..+..       ..-+++|||||||||||++.
T Consensus         3 ~RP-~~~ddivGq~~~~~~L~~~i~~--~~~~~-------~~~~~~Ll~GPpG~GKTtla   52 (239)
T d1ixsb2           3 LRP-KTLDEYIGQERLKQKLRVYLEA--AKARK-------EPLEHLLLFGPPGLGKTTLA   52 (239)
T ss_dssp             CCC-CSGGGSCSCHHHHHHHHHHHHH--HTTSS-------SCCCCEEEECCTTSCHHHHH
T ss_pred             cCC-CCHHHhCCHHHHHHHHHHHHHH--HHhcC-------CCCCeEEEECCCCCCHHHHH
Confidence            478 6899999999999999999988  33221       12358999999999999875

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.48  E-value=2.4e-09  Score=91.00  Aligned_cols=50  Identities=14%  Similarity=-0.054  Sum_probs=39.3

Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        203 ARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       203 ~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      +|| -+|+||.|.+++++.|...++-  +.+..+.       -+++|||||||||||++.
T Consensus         3 ~RP-~~~~divGqe~~~~~l~~~i~~--~~~~~~~-------~~~~L~~GPpGtGKT~lA   52 (238)
T d1in4a2           3 LRP-KSLDEFIGQENVKKKLSLALEA--AKMRGEV-------LDHVLLAGPPGLGKTTLA   52 (238)
T ss_dssp             TSC-SSGGGCCSCHHHHHHHHHHHHH--HHHHTCC-------CCCEEEESSTTSSHHHHH
T ss_pred             CCC-CcHHHcCChHHHHHHHHHHHHH--HHhcCCC-------CCeEEEECCCCCcHHHHH
Confidence            578 4899999999999999998865  3332221       247999999999999874

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.32  E-value=7.8e-07  Score=75.43  Aligned_cols=28  Identities=21%  Similarity=0.343  Sum_probs=24.8

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      ..+.+++|+||+|+|||+++++|+..+.
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            3457899999999999999999999874

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=98.26  E-value=2.3e-07  Score=78.45  Aligned_cols=38  Identities=45%  Similarity=0.795  Sum_probs=33.2

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL   57 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l   57 (299)
                      ...++||+||||+||||+++++|++++.++..+++..+
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~~~~~   71 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI   71 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHHTCCEEEEETTTC
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCCeEeccCCcc
Confidence            45689999999999999999999999988887776554

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.24  E-value=2.9e-07  Score=78.21  Aligned_cols=41  Identities=29%  Similarity=0.518  Sum_probs=35.1

Q ss_pred             CCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhh
Q psy13773         18 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL   58 (299)
Q Consensus        18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~   58 (299)
                      ......++|+|||||||||++++||++++..++.+++.++.
T Consensus        49 ~~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~~~~~~~~   89 (253)
T d1sxja2          49 SGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVR   89 (253)
T ss_dssp             TTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCC
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHHHhhhhccccccch
Confidence            34556899999999999999999999999888888876654

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.23  E-value=4e-08  Score=87.19  Aligned_cols=62  Identities=8%  Similarity=-0.045  Sum_probs=46.4

Q ss_pred             ccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCC--CCCCcccccCCCCCCCeeee
Q psy13773        191 ITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQ--SGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       191 it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~--~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .++.|+.+.|++.-=        |.+++|+.+.+.|..  |+++..++....  +...|+|||||||||||+|-
T Consensus         3 ~~p~~i~~~L~~~Vi--------GQd~A~~~l~~av~~--~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lA   66 (309)
T d1ofha_           3 MTPREIVSELDQHII--------GQADAKRAVAIALRN--RWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIA   66 (309)
T ss_dssp             CCHHHHHHHHHTTCC--------SCHHHHHHHHHHHHH--HHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHH
T ss_pred             CCHHHHHHHhcCccc--------ChHHHHHHHHHHHHH--HHHHhccCCCCccCCCCceEEEECCCCCCHHHHH
Confidence            568899999876322        667788888888876  777776654322  24479999999999999974

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.21  E-value=7.9e-07  Score=82.43  Aligned_cols=58  Identities=29%  Similarity=0.569  Sum_probs=46.0

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhh-cccccc-HHHHHHHHHHHHH
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFGES-EANVRDIFDKVTM   78 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~-~~~g~~-~~~i~~~f~~a~~   78 (299)
                      +..|||+||+|||||.|+|.||+.++.+|+.++|..+.. -|+|+. +..++.+.+.+..
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~daT~fTeaGYvG~DVesii~~L~~~a~~  108 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMK  108 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhCCCEEEeecceeeecceeecchhHHHHHHHHHHhh
Confidence            568999999999999999999999999999999999875 356654 5556776665543

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.18  E-value=9.8e-08  Score=81.19  Aligned_cols=62  Identities=8%  Similarity=-0.071  Sum_probs=44.2

Q ss_pred             HHhccCCCCHHHHHHHHHHHHHHHHhhc-CC--CCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        200 MRFARRSVNDADIRKYEMFAQTLQQSRG-FG--TNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       200 L~~~~PsVsw~DIggL~~vk~~i~~ti~-~~--~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .++++| -+++||-|.++.++++.+.+. |.  .+...+.....+..+..++|||||||||||++-
T Consensus         5 ~eky~P-~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a   69 (253)
T d1sxja2           5 TVKYAP-TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAA   69 (253)
T ss_dssp             HHHTCC-SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHH
T ss_pred             ccCcCC-CCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHH
Confidence            356888 478999999998888887653 20  011223345556677789999999999999863

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.15  E-value=5.5e-07  Score=71.61  Aligned_cols=38  Identities=29%  Similarity=0.414  Sum_probs=33.5

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL   57 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l   57 (299)
                      .|+.|+|.|||||||||+++.|+..++..++.++...+
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~   40 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL   40 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHH
Confidence            36789999999999999999999999999888876554

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.07  E-value=1.2e-06  Score=69.67  Aligned_cols=37  Identities=22%  Similarity=0.298  Sum_probs=31.5

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL   57 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l   57 (299)
                      .+.|+|.||+|||||||++.||..++..++..+...+
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~~~~~   43 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREF   43 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCeEeeehHHH
Confidence            5679999999999999999999999987776655443

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.05  E-value=1.2e-05  Score=68.19  Aligned_cols=24  Identities=33%  Similarity=0.212  Sum_probs=21.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      .++|+||||||||+++++++..+.
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHH
Confidence            456789999999999999999764

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.99  E-value=9.5e-07  Score=75.29  Aligned_cols=46  Identities=15%  Similarity=0.061  Sum_probs=32.3

Q ss_pred             CCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        207 VNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       207 Vsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      |...|.++-+.+++.+.+.++.   .+       +..+-.|||||||||||||.|-
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~---~~-------~~~~P~~ilL~GpPGtGKT~la   49 (273)
T d1gvnb_           4 VNFTDKQFENRLNDNLEELIQG---KK-------AVESPTAFLLGGQPGSGKTSLR   49 (273)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHTT---CC-------CCSSCEEEEEECCTTSCTHHHH
T ss_pred             cccChHHHHHHHHHHHHHHHhc---cc-------CCCCCEEEEEECCCCCCHHHHH
Confidence            4455666666677777666655   22       3344568999999999999874

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=1.5e-06  Score=67.69  Aligned_cols=31  Identities=26%  Similarity=0.630  Sum_probs=27.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      +.|.|.||+||||||+++.||..++..++..
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~~~~id~   33 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS   33 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTCEEEEH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCeEee
Confidence            4688899999999999999999998777643

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.97  E-value=3e-07  Score=77.92  Aligned_cols=48  Identities=15%  Similarity=0.041  Sum_probs=38.1

Q ss_pred             HhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        201 RFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       201 ~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      ++++| .+++||-|.+++++.|...+..  +-.+|           .+|||||||||||++-
T Consensus         3 eky~P-~~~~diig~~~~~~~L~~~~~~--~~~~~-----------~lll~Gp~G~GKTt~~   50 (252)
T d1sxje2           3 DKYRP-KSLNALSHNEELTNFLKSLSDQ--PRDLP-----------HLLLYGPNGTGKKTRC   50 (252)
T ss_dssp             TTTCC-CSGGGCCSCHHHHHHHHTTTTC--TTCCC-----------CEEEECSTTSSHHHHH
T ss_pred             cccCC-CCHHHccCcHHHHHHHHHHHHc--CCCCC-----------eEEEECCCCCCHHHHH
Confidence            46788 6899999999999999876654  32222           5999999999999875

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.94  E-value=2e-06  Score=68.59  Aligned_cols=30  Identities=33%  Similarity=0.524  Sum_probs=25.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      .|+|.||||||||||+++|++.+......+
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~   31 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRAIGF   31 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEE
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCCcceE
Confidence            389999999999999999999988765444

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.94  E-value=3.4e-07  Score=76.96  Aligned_cols=48  Identities=19%  Similarity=0.104  Sum_probs=39.4

Q ss_pred             HHhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        200 MRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       200 L~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .++++|. +++||=|-+++++.|...+.-              .+.+.+|||||||||||+|.
T Consensus        15 ~~ky~P~-~~~diig~~~~~~~l~~~i~~--------------~~~~~lll~Gp~G~GKTtla   62 (231)
T d1iqpa2          15 VEKYRPQ-RLDDIVGQEHIVKRLKHYVKT--------------GSMPHLLFAGPPGVGKTTAA   62 (231)
T ss_dssp             HHHTCCC-STTTCCSCHHHHHHHHHHHHH--------------TCCCEEEEESCTTSSHHHHH
T ss_pred             HHHhCCC-CHHHccCcHHHHHHHHHHHHc--------------CCCCeEEEECCCCCcHHHHH
Confidence            4788995 889998999999999998775              12345999999999999775

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.94  E-value=2.8e-06  Score=67.19  Aligned_cols=33  Identities=12%  Similarity=0.345  Sum_probs=28.8

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVK   53 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~   53 (299)
                      .+.|+|.|+|||||||++++|+..++...+.++
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~   35 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFG   35 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCeEEee
Confidence            468999999999999999999999987766554

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=3.8e-06  Score=66.37  Aligned_cols=33  Identities=24%  Similarity=0.417  Sum_probs=28.3

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      .+..++|+|||||||||+++.|+..++...+..
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~   37 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDG   37 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCeech
Confidence            467889999999999999999999998665544

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.87  E-value=2.7e-06  Score=67.16  Aligned_cols=31  Identities=39%  Similarity=0.704  Sum_probs=26.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANFISVK   53 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~   53 (299)
                      .|+|.|||||||||+++.||..++..++.++
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l~~~~i~~~   36 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKSGLKYINVG   36 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCcEEech
Confidence            4779999999999999999999987776543

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.84  E-value=3.1e-06  Score=67.00  Aligned_cols=29  Identities=17%  Similarity=0.242  Sum_probs=26.0

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      ..|..|+|+|+|||||||++++||..++.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~~   32 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLNQ   32 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            46788999999999999999999998864

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.80  E-value=3.9e-06  Score=66.58  Aligned_cols=31  Identities=32%  Similarity=0.589  Sum_probs=27.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANFISVK   53 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~   53 (299)
                      .|.|+|+|||||||+++.||..++..++..|
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~~~~~d~d   32 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLDLVFLDSD   32 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCEEecC
Confidence            4788899999999999999999998887654

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.77  E-value=5.9e-06  Score=65.58  Aligned_cols=30  Identities=20%  Similarity=0.519  Sum_probs=26.4

Q ss_pred             EEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773         24 VLFYGPPGCGKTLLAKAIANECQANFISVK   53 (299)
Q Consensus        24 vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~   53 (299)
                      |.|+|++||||||+++.||..++.+++..|
T Consensus         4 IvliG~~G~GKSTig~~La~~l~~~fiD~D   33 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALGVGLLDTD   33 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCeEeec
Confidence            556699999999999999999999987654

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.75  E-value=5.9e-06  Score=65.93  Aligned_cols=32  Identities=22%  Similarity=0.550  Sum_probs=27.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQANFISVK   53 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~   53 (299)
                      +.|.|+|++||||||+++.||..++..++..|
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~~id~D   34 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALGYEFVDTD   34 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCEEehh
Confidence            34778899999999999999999998877554

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.72  E-value=1e-05  Score=65.64  Aligned_cols=32  Identities=22%  Similarity=0.310  Sum_probs=27.7

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFI   50 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i   50 (299)
                      ..|..|+|+|||||||||+++.||..++...+
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i   35 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHL   35 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence            46788999999999999999999999875443

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.70  E-value=1e-05  Score=63.81  Aligned_cols=29  Identities=38%  Similarity=0.572  Sum_probs=25.3

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      +++..|+|.|||||||||+++.|+..+..
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~~   31 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELDG   31 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhCC
Confidence            45567999999999999999999998763

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.70  E-value=9.4e-06  Score=63.65  Aligned_cols=27  Identities=26%  Similarity=0.477  Sum_probs=24.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhcCC
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQAN   48 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~   48 (299)
                      +.|+|.|||||||||+++.|+..++..
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~~   29 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDNS   29 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            568999999999999999999988654

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.70  E-value=8.5e-06  Score=68.04  Aligned_cols=35  Identities=43%  Similarity=0.712  Sum_probs=27.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhcC-----Ceecccchh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQA-----NFISVKGPE   56 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~~-----~~i~i~~~~   56 (299)
                      ..++|+||+|+||||+++++|.++..     .++++++.+
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~~e~n~s~   85 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD   85 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHhcccCCCeeEEecCc
Confidence            46999999999999999999998753     445555544

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=8.9e-06  Score=64.36  Aligned_cols=25  Identities=40%  Similarity=0.679  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      +.|+|+||+|||||||+++++..+.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~   26 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHH
Confidence            5699999999999999999999874

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=5.6e-06  Score=66.73  Aligned_cols=28  Identities=25%  Similarity=0.290  Sum_probs=25.1

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      .|..|+|+|+|||||||+++.|+..++.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~   45 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVC   45 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4678889999999999999999998864

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.65  E-value=1.4e-05  Score=64.71  Aligned_cols=32  Identities=25%  Similarity=0.445  Sum_probs=26.6

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFIS   51 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~   51 (299)
                      ++..|+|+|||||||||+++.||..++..++.
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~g~~~i~   33 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA   33 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence            45668889999999999999999998655443

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.63  E-value=3e-06  Score=70.66  Aligned_cols=47  Identities=13%  Similarity=-0.012  Sum_probs=35.6

Q ss_pred             HHhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeee
Q psy13773        200 MRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILL  261 (299)
Q Consensus       200 L~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll  261 (299)
                      .+++|| -+++||=|-+++++.|..-+.-              ++-+.+|||||||||||.+
T Consensus         5 ~ekyrP-~~~~divg~~~~~~~L~~~i~~--------------~~~~~lLl~Gp~G~GKttl   51 (227)
T d1sxjc2           5 VEKYRP-ETLDEVYGQNEVITTVRKFVDE--------------GKLPHLLFYGPPGTGKTST   51 (227)
T ss_dssp             HHHTCC-SSGGGCCSCHHHHHHHHHHHHT--------------TCCCCEEEECSSSSSHHHH
T ss_pred             hhhhCC-CCHHHccCcHHHHHHHHHHHHc--------------CCCCeEEEECCCCCChhHH
Confidence            357788 4778888888888888887654              1234589999999999954

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.61  E-value=1.2e-05  Score=64.97  Aligned_cols=31  Identities=29%  Similarity=0.387  Sum_probs=26.4

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFIS   51 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~   51 (299)
                      |..|+|.|||||||||+++.|+..++..++.
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~~~~~is   33 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKYQLAHIS   33 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHCCcEEe
Confidence            4568899999999999999999998766543

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.58  E-value=1.4e-05  Score=64.93  Aligned_cols=38  Identities=24%  Similarity=0.390  Sum_probs=30.2

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL   58 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~   58 (299)
                      ..+..|+|.|||||||||+++.||..++..  .++..+++
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~~g~~--~is~g~ll   43 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQKYGYT--HLSTGDLL   43 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHHTCCE--EEEHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHhCCe--eEeccHHH
Confidence            457889999999999999999999987644  44544443

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.57  E-value=1.6e-05  Score=63.40  Aligned_cols=30  Identities=30%  Similarity=0.451  Sum_probs=25.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      .|+|.|||||||||+++.||..++..++..
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~~~~i~~   31 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYGIPHIST   31 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceech
Confidence            378999999999999999999987665543

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=2e-05  Score=69.43  Aligned_cols=38  Identities=24%  Similarity=0.431  Sum_probs=33.9

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhh
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL   58 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~   58 (299)
                      ...++|+||+|+|||.|+++||..++.+++.+++.++.
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~~   89 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYM   89 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCS
T ss_pred             ceEEEEECCCcchhHHHHHHHHhhccCCeeEecccccc
Confidence            34788999999999999999999999999999988764

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.56  E-value=2.5e-05  Score=63.44  Aligned_cols=31  Identities=16%  Similarity=0.341  Sum_probs=26.2

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFI   50 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i   50 (299)
                      .-..|+|+|||||||||+++.||..++...+
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~g~~~i   37 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHL   37 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHSSCEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence            4567899999999999999999998865443

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.54  E-value=6.9e-05  Score=62.92  Aligned_cols=39  Identities=21%  Similarity=0.158  Sum_probs=33.2

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL   58 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~   58 (299)
                      .+..++|+||+|+|||+|++.++...+.....+++....
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~~i~~~~~~   66 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFE   66 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGT
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHCCCCeEEEEecccc
Confidence            567899999999999999999999998877777765543

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=97.53  E-value=1.9e-06  Score=76.31  Aligned_cols=51  Identities=6%  Similarity=-0.088  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHH--hhcCCCCCCCCCCCCCC-CCCCCcccc-cCCCCCCCeeee
Q psy13773        210 ADIRKYEMFAQTLQQ--SRGFGTNFRFPSNPNQS-QSGGPNSAP-ANESGTGGILLM  262 (299)
Q Consensus       210 ~DIggL~~vk~~i~~--ti~~~~Plk~Pe~~~~~-~~k~s~~l~-~g~~gtg~~ll~  262 (299)
                      ++.+++.+.+++.+.  .++|  |.++|..|... .+-..|++| |||||||||+|-
T Consensus        86 ~~~~~L~~~a~~~~~d~v~~~--~~~~~~~~~~~~~~~~~g~~l~~G~pG~GKT~la  140 (321)
T d1w44a_          86 VENGFMKQGHRGWLVDLTGEL--VGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLV  140 (321)
T ss_dssp             EETTEEEECCSEESSCSCTTC--CSBCCEEEEETTEEEESEEEEEECSSSSCHHHHH
T ss_pred             HHHhHHHHHHHhcCcchhccc--cccchHHHHHhhcccCCceEEEECCCCccHHHHH
Confidence            445555544443333  3467  89999999875 466778766 999999999973

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.53  E-value=2.8e-05  Score=60.04  Aligned_cols=35  Identities=23%  Similarity=0.441  Sum_probs=25.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL   57 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l   57 (299)
                      +.|+|+|+|||||||+++.|+.... +...++..++
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~~-~~~~~~~d~~   37 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKNP-GFYNINRDDY   37 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHST-TEEEECHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCC-CCEEechHHH
Confidence            5688999999999999999876532 3444544333

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=2.9e-05  Score=62.79  Aligned_cols=30  Identities=23%  Similarity=0.347  Sum_probs=25.6

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFI   50 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i   50 (299)
                      |..|+|.|||||||||+++.||..++...+
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i   30 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL   30 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceE
Confidence            457899999999999999999999865443

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.49  E-value=5.4e-06  Score=69.09  Aligned_cols=47  Identities=19%  Similarity=0.037  Sum_probs=32.7

Q ss_pred             HhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        201 RFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       201 ~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      +++|| -+.+|+=|-+++++.|...+.=              .+.+.+|||||||+|||++.
T Consensus         7 eKyrP-~~~~d~ig~~~~~~~L~~~~~~--------------~~~~~~ll~Gp~G~GKTt~a   53 (224)
T d1sxjb2           7 EKYRP-QVLSDIVGNKETIDRLQQIAKD--------------GNMPHMIISGMPGIGKTTSV   53 (224)
T ss_dssp             HHTCC-SSGGGCCSCTHHHHHHHHHHHS--------------CCCCCEEEECSTTSSHHHHH
T ss_pred             hHhCC-CCHHHhcCCHHHHHHHHHHHHc--------------CCCCeEEEECCCCCCchhhH
Confidence            46778 4556666666777777766543              22345899999999999763

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=97.48  E-value=3e-05  Score=69.70  Aligned_cols=40  Identities=28%  Similarity=0.493  Sum_probs=35.5

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT   59 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~   59 (299)
                      ++..+|++||+|||||-|+|+||..+..+++.+++..+..
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~~~~~~~ir~D~s~~~e  106 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTE  106 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-
T ss_pred             CCcceeeeCCCCccHHHHHHHHHhhcccceeehhhhhccc
Confidence            5678999999999999999999999999999999887754

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.48  E-value=2.5e-05  Score=62.65  Aligned_cols=30  Identities=20%  Similarity=0.203  Sum_probs=25.9

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcCC
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQAN   48 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~   48 (299)
                      +.+..|+++|+|||||||+++.++...+..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~~~~~   41 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYV   41 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGGGTCE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence            678899999999999999999998776543

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.45  E-value=2.6e-05  Score=64.75  Aligned_cols=25  Identities=32%  Similarity=0.493  Sum_probs=22.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      .++|+||+||||||+++++|.++..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~l~~   62 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHELLG   62 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred             eEEEECCCCCCchhhHHHHHHHHhc
Confidence            5899999999999999999998764

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.45  E-value=3e-05  Score=62.10  Aligned_cols=30  Identities=40%  Similarity=0.557  Sum_probs=25.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      .|+|.|||||||||+++.||..++...+.+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g~~~i~~   31 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLGIPQIST   31 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceEch
Confidence            478999999999999999999997665543

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=8.7e-05  Score=60.65  Aligned_cols=64  Identities=17%  Similarity=0.376  Sum_probs=47.6

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc----------CCeecccchhhhh--ccccccHHHHHHHHHHHH
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ----------ANFISVKGPELLT--MWFGESEANVRDIFDKVT   77 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~----------~~~i~i~~~~l~~--~~~g~~~~~i~~~f~~a~   77 (299)
                      ..|.-.....++|+|+||+|||++++.||..+-          ..++.+|...+.+  ++.|+-+..+..++..+.
T Consensus        36 ~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e~~  111 (195)
T d1jbka_          36 QVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLA  111 (195)
T ss_dssp             HHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHH
T ss_pred             HHHhccCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHhccCCccHHHHHHHHHHHHHHh
Confidence            334445667899999999999999999998552          4567788888764  455667777777776543

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.42  E-value=3.8e-05  Score=61.57  Aligned_cols=29  Identities=31%  Similarity=0.515  Sum_probs=25.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANFIS   51 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~   51 (299)
                      .|+|.|||||||||+++.||..++..++.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g~~~is   30 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYGTPHIS   30 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceee
Confidence            37899999999999999999998766554

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.40  E-value=7.7e-06  Score=69.68  Aligned_cols=17  Identities=12%  Similarity=0.042  Sum_probs=15.3

Q ss_pred             CcccccCCCCCCCeeee
Q psy13773        246 PNSAPANESGTGGILLM  262 (299)
Q Consensus       246 s~~l~~g~~gtg~~ll~  262 (299)
                      .|||||||||||||++-
T Consensus        41 ~~vLL~GppGtGKT~la   57 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALA   57 (246)
T ss_dssp             EEEEEECSTTSSHHHHH
T ss_pred             eEEEEECcCCCCHHHHH
Confidence            58999999999999874

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=4.5e-05  Score=62.47  Aligned_cols=28  Identities=36%  Similarity=0.540  Sum_probs=25.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANFI   50 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i   50 (299)
                      .|+|.|||||||+|+++.||..++..++
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~i   32 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHLL   32 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence            7899999999999999999999976553

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.39  E-value=3.6e-05  Score=63.92  Aligned_cols=24  Identities=50%  Similarity=0.843  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      ..++|+||+|+||||+++++|+++
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHHH
Confidence            358999999999999999999986

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.39  E-value=3.7e-05  Score=62.45  Aligned_cols=35  Identities=23%  Similarity=0.431  Sum_probs=27.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL   58 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~   58 (299)
                      -.|+|+|||||||||+++.||..++..+  ++..++.
T Consensus         7 mrIiliG~PGSGKtT~a~~La~~~g~~~--is~gdll   41 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITKHFELKH--LSSGDLL   41 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHBCCEE--EEHHHHH
T ss_pred             eeEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence            4578889999999999999999887554  4443443

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.38  E-value=4.9e-05  Score=60.06  Aligned_cols=26  Identities=23%  Similarity=0.388  Sum_probs=23.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      +.|+|.|++||||||+++.|+..++.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~   27 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRK   27 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            57999999999999999999998764

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=4.6e-05  Score=59.58  Aligned_cols=24  Identities=29%  Similarity=0.235  Sum_probs=22.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      .++|+|++|||||||++.|+..+.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999998764

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=4.1e-05  Score=61.38  Aligned_cols=29  Identities=28%  Similarity=0.576  Sum_probs=24.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANFIS   51 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~   51 (299)
                      .|+|.|||||||||+++.||..++...+.
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~g~~~i~   32 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERFHAAHLA   32 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceEe
Confidence            47788999999999999999998755443

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.34  E-value=3.6e-05  Score=64.55  Aligned_cols=24  Identities=33%  Similarity=0.587  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      ..++|+||+||||||+++++|.++
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhh
Confidence            368999999999999999999976

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=5.4e-05  Score=60.41  Aligned_cols=29  Identities=28%  Similarity=0.367  Sum_probs=24.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANFIS   51 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~   51 (299)
                      .|+|.|||||||||+++.||..++...+.
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~~~~i~   30 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYGIPQIS   30 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence            47889999999999999999998765543

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=0.00013  Score=62.65  Aligned_cols=64  Identities=20%  Similarity=0.309  Sum_probs=47.4

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc----------CCeecccchhhhh--ccccccHHHHHHHHHHHH
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ----------ANFISVKGPELLT--MWFGESEANVRDIFDKVT   77 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~----------~~~i~i~~~~l~~--~~~g~~~~~i~~~f~~a~   77 (299)
                      .-|.-.....++|+||||+|||++++.+|..+.          ..++.++...+.+  ++.|+-+..++.++..+.
T Consensus        32 ~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~~~~  107 (268)
T d1r6bx2          32 QVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLE  107 (268)
T ss_dssp             HHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHS
T ss_pred             HHHhcCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHhccCccchhHHHHHHHHHHHhh
Confidence            334445667899999999999999999998642          3467788887765  677888888888887754

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=97.33  E-value=1.4e-05  Score=71.86  Aligned_cols=23  Identities=9%  Similarity=-0.126  Sum_probs=20.0

Q ss_pred             CCCCCCCcccccCCCCCCCeeee
Q psy13773        240 QSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       240 ~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .|..|+.++|||||||||||++-
T Consensus       149 ~~~~~~~~~~~~g~~~~gk~~~~  171 (362)
T d1svma_         149 YNIPKKRYWLFKGPIDSGKTTLA  171 (362)
T ss_dssp             HCCTTCCEEEEECSTTSSHHHHH
T ss_pred             hCCCCcCeEEEECCCCCCHHHHH
Confidence            46678899999999999999863

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.32  E-value=4.7e-05  Score=63.04  Aligned_cols=25  Identities=52%  Similarity=0.836  Sum_probs=22.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      .++|+||+|+||||+++++|+++..
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l~~   61 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREIYG   61 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCChhHHHHHHHHHhhc
Confidence            5899999999999999999998753

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.32  E-value=6.7e-06  Score=68.59  Aligned_cols=46  Identities=15%  Similarity=0.073  Sum_probs=31.7

Q ss_pred             HhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeee
Q psy13773        201 RFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILL  261 (299)
Q Consensus       201 ~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll  261 (299)
                      ++++| .+.+||=|-+++++.+...+.-              .+-+.++||||||||||+|
T Consensus         4 ~ky~P-~~~~diig~~~~~~~l~~~i~~--------------~~~~~lll~Gp~G~GKTtl   49 (237)
T d1sxjd2           4 EKYRP-KNLDEVTAQDHAVTVLKKTLKS--------------ANLPHMLFYGPPGTGKTST   49 (237)
T ss_dssp             HHTCC-SSTTTCCSCCTTHHHHHHHTTC--------------TTCCCEEEECSTTSSHHHH
T ss_pred             hhhCC-CCHHHccCcHHHHHHHHHHHHc--------------CCCCeEEEECCCCCChHHH
Confidence            45777 5566666667777777765432              1123499999999999964

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.27  E-value=7e-05  Score=61.58  Aligned_cols=28  Identities=29%  Similarity=0.535  Sum_probs=24.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANFI   50 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i   50 (299)
                      .|.|.|||||||||+++.||.+++..++
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg~~~i   32 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFGFTYL   32 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence            4678899999999999999999976543

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.24  E-value=0.0001  Score=60.78  Aligned_cols=40  Identities=18%  Similarity=0.292  Sum_probs=33.2

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhh----cCCeecccchhhh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELL   58 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l----~~~~i~i~~~~l~   58 (299)
                      ..+..|.|.|.||+||||+++.|+..+    +.+.+.+++..+-
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR   65 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR   65 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHH
Confidence            578899999999999999999999765    4567778877653

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=2e-05  Score=66.46  Aligned_cols=47  Identities=21%  Similarity=0.187  Sum_probs=36.4

Q ss_pred             HhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeee
Q psy13773        201 RFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILL  261 (299)
Q Consensus       201 ~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll  261 (299)
                      +++||. +.+|+=|-+++++.|...+.-+   +.          -+.+|||||||||||.+
T Consensus         4 ~KyrP~-~~~dlig~~~~~~~L~~~i~~~---~~----------~~~~Ll~Gp~G~GKtt~   50 (239)
T d1njfa_           4 RKWRPQ-TFADVVGQEHVLTALANGLSLG---RI----------HHAYLFSGTRGVGKTSI   50 (239)
T ss_dssp             HHTCCS-SGGGSCSCHHHHHHHHHHHHTT---CC----------CSEEEEECSTTSSHHHH
T ss_pred             hhhCCC-CHHHccChHHHHHHHHHHHHcC---CC----------CeeEEEECCCCCcHHHH
Confidence            578894 8888888899999988877541   11          13689999999999965

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.22  E-value=8.3e-05  Score=60.27  Aligned_cols=27  Identities=22%  Similarity=0.351  Sum_probs=24.0

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      |..|+++|.||+||||+++.|+..++.
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~   28 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNF   28 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            467899999999999999999997764

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.17  E-value=0.00012  Score=58.45  Aligned_cols=29  Identities=21%  Similarity=0.168  Sum_probs=24.7

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      ..+-.|+|.|++|||||||++.|+..++.
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~~l~~   48 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQTLRE   48 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            44557889999999999999999997764

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.11  E-value=0.00012  Score=58.03  Aligned_cols=27  Identities=19%  Similarity=0.305  Sum_probs=23.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhcCC
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQAN   48 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~   48 (299)
                      +.++|.|++||||||+++.|+..++..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~   28 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQ   28 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            467889999999999999999988643

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.11  E-value=0.00018  Score=57.53  Aligned_cols=26  Identities=23%  Similarity=0.507  Sum_probs=23.5

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      |+.|+|+||+|+||||+++.|.....
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            67899999999999999999998754

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.01  E-value=8.7e-05  Score=68.31  Aligned_cols=62  Identities=6%  Similarity=0.011  Sum_probs=36.9

Q ss_pred             ccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhcC--CCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        191 ITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGF--GTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       191 it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~ti~~--~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      +|+.++.+.|+++-  |      |-++.|+.+--++--  - =+++++-....+.| ||||+.||+|||||||.
T Consensus         3 ltP~~i~~~Ld~yV--v------GQ~~AKk~lsvav~nhyr-R~~~~~~~~~ei~k-sNILliGPTGvGKTlLA   66 (443)
T d1g41a_           3 MTPREIVSELDQHI--I------GQADAKRAVAIALRNRWR-RMQLQEPLRHEVTP-KNILMIGPTGVGKTEIA   66 (443)
T ss_dssp             CCHHHHHHHHHTTC--C------SCHHHHHHHHHHHHHHHH-HHHSCTTTTTTCCC-CCEEEECCTTSSHHHHH
T ss_pred             CCHHHHHHHhcCcc--c------CcHHHHHHHHHHHHHHHH-Hhhccccccccccc-ccEEEECCCCCCHHHHH
Confidence            67888888888763  2      334444444332200  0 01123333334444 59999999999999985

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.00  E-value=2.3e-05  Score=66.34  Aligned_cols=16  Identities=19%  Similarity=0.171  Sum_probs=13.8

Q ss_pred             cccccCCCCCCCeeee
Q psy13773        247 NSAPANESGTGGILLM  262 (299)
Q Consensus       247 ~~l~~g~~gtg~~ll~  262 (299)
                      .+++|||||||||+++
T Consensus        48 ~l~l~GppGtGKT~l~   63 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLA   63 (287)
T ss_dssp             EEECTTCCSSSHHHHH
T ss_pred             EEEeECCCCCCHHHHH
Confidence            4678999999999875

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00021  Score=58.47  Aligned_cols=28  Identities=18%  Similarity=0.112  Sum_probs=24.6

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCC
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQAN   48 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~   48 (299)
                      |-.|+|.|++||||||+++.|+..++..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~~~   29 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLGQN   29 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            5578999999999999999999988643

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00023  Score=57.02  Aligned_cols=31  Identities=23%  Similarity=0.401  Sum_probs=27.5

Q ss_pred             cCCCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        15 sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      .-++.++..++|+||||+|||+++..+|...
T Consensus        17 ~GGi~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          17 QGGIETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             TTSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cCCCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3468999999999999999999999998754

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.94  E-value=0.00023  Score=62.46  Aligned_cols=37  Identities=38%  Similarity=0.611  Sum_probs=30.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhh---cCCeecccchhhh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL   58 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~~~~l~   58 (299)
                      ..++++||+|+|||.+++.||..+   ...++.+++.+..
T Consensus        54 ~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~   93 (315)
T d1qvra3          54 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM   93 (315)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred             eEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccc
Confidence            367888999999999999999987   4567778776554

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.94  E-value=4e-05  Score=67.60  Aligned_cols=43  Identities=14%  Similarity=-0.143  Sum_probs=32.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeee
Q psy13773        205 RSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILL  261 (299)
Q Consensus       205 PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll  261 (299)
                      |-.-..||-|.+++|+.++=+...  |--|            ++|++||||||||+|
T Consensus         2 ~~~~f~~I~Gq~~~kral~laa~~--~~~h------------~vLl~G~pG~GKT~l   44 (333)
T d1g8pa_           2 PVFPFSAIVGQEDMKLALLLTAVD--PGIG------------GVLVFGDRGTGKSTA   44 (333)
T ss_dssp             CCCCGGGSCSCHHHHHHHHHHHHC--GGGC------------CEEEECCGGGCTTHH
T ss_pred             CCCChhhccCcHHHHHHHHHHHhc--cCCC------------eEEEECCCCccHHHH
Confidence            444577888999999876655443  2222            899999999999976

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.00027  Score=59.16  Aligned_cols=28  Identities=32%  Similarity=0.483  Sum_probs=24.3

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      .+..++|+||+|+||||++++++..+..
T Consensus        33 ~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~   60 (239)
T d1njfa_          33 IHHAYLFSGTRGVGKTSIARLLAKGLNC   60 (239)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHC
T ss_pred             CCeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence            3557999999999999999999998753

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.90  E-value=0.00026  Score=55.50  Aligned_cols=25  Identities=20%  Similarity=0.076  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      +.+.+.|++|||||||++.|+.++.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4678999999999999999998765

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.84  E-value=0.00034  Score=56.21  Aligned_cols=24  Identities=33%  Similarity=0.599  Sum_probs=21.6

Q ss_pred             EEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         24 VLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        24 vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      |+|+||+|+|||||++.|+.....
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~~   27 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYPD   27 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCc
Confidence            889999999999999999987653

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.78  E-value=0.00028  Score=58.09  Aligned_cols=31  Identities=23%  Similarity=0.290  Sum_probs=27.0

Q ss_pred             hcCCCCCCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773         14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      ..-+++++..++|+|+||||||+++..++..
T Consensus        27 l~GGi~~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          27 LGGGVETGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             HTSSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             hCCCCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3446899999999999999999999988764

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.77  E-value=0.00043  Score=56.74  Aligned_cols=28  Identities=21%  Similarity=0.301  Sum_probs=24.2

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      ..+..++|+||+|+||||+++++|..+-
T Consensus        22 ~l~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          22 RGHHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             CCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CcCeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            3456799999999999999999999763

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.76  E-value=0.00044  Score=55.80  Aligned_cols=25  Identities=36%  Similarity=0.595  Sum_probs=22.1

Q ss_pred             EEEEcCCCChHHHHHHHHHHhhcCC
Q psy13773         24 VLFYGPPGCGKTLLAKAIANECQAN   48 (299)
Q Consensus        24 vLL~Gp~GsGKTtLlr~La~~l~~~   48 (299)
                      |+|+||+|+|||||++.|+...+..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~~   27 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSSI   27 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCc
Confidence            7899999999999999999876543

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.75  E-value=8e-05  Score=62.45  Aligned_cols=18  Identities=22%  Similarity=0.383  Sum_probs=15.4

Q ss_pred             CCcccccCCCCCCCeeee
Q psy13773        245 GPNSAPANESGTGGILLM  262 (299)
Q Consensus       245 ~s~~l~~g~~gtg~~ll~  262 (299)
                      -+++|+|||||||||.+.
T Consensus        43 ~~~lll~GppGtGKT~l~   60 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTL   60 (276)
T ss_dssp             CCEEEEECCTTSSHHHHH
T ss_pred             CCceEEECCCCCCHHHHH
Confidence            457999999999999664

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.70  E-value=0.00039  Score=57.39  Aligned_cols=35  Identities=31%  Similarity=0.512  Sum_probs=27.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc---CCeecccchhh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPEL   57 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~---~~~i~i~~~~l   57 (299)
                      .+.|+||+|||||.|++++|.+..   ...++++..++
T Consensus        38 ~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~   75 (213)
T d1l8qa2          38 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF   75 (213)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             cEEEECCCCCcHHHHHHHHHHHhccCccceEEechHHH
Confidence            389999999999999999999764   34555655444

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.67  E-value=0.00056  Score=53.77  Aligned_cols=31  Identities=23%  Similarity=0.282  Sum_probs=27.6

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      ...++..|+|.|+=|+||||++|.+++.++.
T Consensus        29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             cCCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence            4467889999999999999999999998874

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.63  E-value=0.00023  Score=62.54  Aligned_cols=24  Identities=38%  Similarity=0.610  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      -++||+|||||||||++|+++..+
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHS
T ss_pred             CeEEEECCCCccHHHHHHHHHHhC
Confidence            369999999999999999999866

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.57  E-value=0.00063  Score=56.27  Aligned_cols=31  Identities=29%  Similarity=0.365  Sum_probs=27.7

Q ss_pred             cCCCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        15 sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      .-+++++..++|+|+||||||+++..+|...
T Consensus        20 ~GGi~~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          20 GGGFFKDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             TSSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3458999999999999999999999999865

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00086  Score=55.37  Aligned_cols=30  Identities=20%  Similarity=0.193  Sum_probs=27.0

Q ss_pred             cCCCCCCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773         15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        15 sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      .-+++++..++|+|+||||||+++..++..
T Consensus        31 gGGip~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          31 GGGIESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             TSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             cCCCcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999999999999864

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.00072  Score=55.39  Aligned_cols=26  Identities=23%  Similarity=0.351  Sum_probs=23.2

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      |..++|+||+|+|||||.+.|.....
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            67899999999999999999998654

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.48  E-value=0.00074  Score=55.91  Aligned_cols=33  Identities=30%  Similarity=0.369  Sum_probs=28.1

Q ss_pred             hhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         13 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        13 ~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      ...-+++++..++|+||||||||+++-.++...
T Consensus        28 ll~GGlp~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          28 LLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             HHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             hhcCCccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            344579999999999999999999999887654

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.001  Score=53.05  Aligned_cols=26  Identities=12%  Similarity=0.419  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      .+.|+|+||+|+||+||++.|.....
T Consensus         3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~   28 (178)
T d1kgda_           3 RKTLVLLGAHGVGRRHIKNTLITKHP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHhCC
Confidence            35689999999999999999997653

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.47  E-value=0.00082  Score=53.72  Aligned_cols=30  Identities=17%  Similarity=0.144  Sum_probs=24.0

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFI   50 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i   50 (299)
                      .|-.|+|+|++||||||+++.|. +.+..++
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~-~~g~~~~   31 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLR-SWGYPVL   31 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHH-HTTCCEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH-HCCCeEE
Confidence            35678999999999999999995 4565544

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.33  E-value=0.00095  Score=50.98  Aligned_cols=22  Identities=23%  Similarity=0.303  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      .|+|+|++|||||||++.++..
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999999864

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.27  E-value=0.0015  Score=58.68  Aligned_cols=59  Identities=24%  Similarity=0.460  Sum_probs=38.7

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhc----------CCeecccchhhhh--ccccccHHHHHHHHHHHH
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQ----------ANFISVKGPELLT--MWFGESEANVRDIFDKVT   77 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~----------~~~i~i~~~~l~~--~~~g~~~~~i~~~f~~a~   77 (299)
                      .....++|+|+||+|||+++..||..+-          ..++.+|...+..  .+.|+-+..+..++..+.
T Consensus        41 ~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~~  111 (387)
T d1qvra2          41 RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVV  111 (387)
T ss_dssp             SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHH
T ss_pred             CCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhcccCcchhHHHHHHHHHHHhc
Confidence            4556789999999999999999997542          2467778777764  566777888887776654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.26  E-value=0.00099  Score=55.39  Aligned_cols=29  Identities=24%  Similarity=0.263  Sum_probs=24.4

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCC
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQAN   48 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~   48 (299)
                      .++..+|.|+||+|||||+++|.......
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~  122 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLR  122 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhhh
Confidence            47789999999999999999998755433

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.22  E-value=0.00087  Score=53.67  Aligned_cols=30  Identities=23%  Similarity=0.170  Sum_probs=26.1

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcCC
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQAN   48 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~   48 (299)
                      +.+..|.|-|+.||||||+++.|+..+...
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~~~   36 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKYKNDI   36 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGGTTTE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            566789999999999999999999988643

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.19  E-value=0.0013  Score=53.43  Aligned_cols=28  Identities=32%  Similarity=0.451  Sum_probs=24.6

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHH
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      -+++++..++|+|+||+|||+|+..++.
T Consensus        21 GGi~~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          21 GGLPIGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            3689999999999999999999976654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.18  E-value=0.0015  Score=53.70  Aligned_cols=24  Identities=33%  Similarity=0.475  Sum_probs=21.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      .+++.|++|+|||||++.|...+.
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~   25 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLE   25 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Confidence            478999999999999999987553

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.14  E-value=0.0014  Score=49.90  Aligned_cols=22  Identities=36%  Similarity=0.588  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -++|+|++|+|||||++.+.+.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999874

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.10  E-value=0.0016  Score=53.14  Aligned_cols=29  Identities=24%  Similarity=0.312  Sum_probs=26.5

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      ++.++..++|.|+||+|||+++-.+|...
T Consensus        30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          30 GLESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            48999999999999999999999998754

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.01  E-value=0.00028  Score=58.09  Aligned_cols=24  Identities=21%  Similarity=0.084  Sum_probs=21.7

Q ss_pred             CCCCCCCcccccCCCCCCCeeeec
Q psy13773        240 QSQSGGPNSAPANESGTGGILLMF  263 (299)
Q Consensus       240 ~~~~k~s~~l~~g~~gtg~~ll~~  263 (299)
                      -|+.+.+-+++|||||||||+|..
T Consensus        29 GGi~~G~~~li~G~pGsGKT~l~l   52 (251)
T d1szpa2          29 GGVETGSITELFGEFRTGKSQLCH   52 (251)
T ss_dssp             SSEESSSEEEEEESTTSSHHHHHH
T ss_pred             CCCcCCeEEEEEcCCCCCHHHHHH
Confidence            478999999999999999999864

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=95.99  E-value=0.0024  Score=48.87  Aligned_cols=23  Identities=26%  Similarity=0.372  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -.|+|+|.+|||||||++.+.+.
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            45899999999999999999874

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=95.99  E-value=0.0026  Score=52.35  Aligned_cols=28  Identities=25%  Similarity=0.320  Sum_probs=22.9

Q ss_pred             CCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         18 MQPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      -.+|..++|+||+|+||||.+--||..+
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3567789999999999999877777654

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.99  E-value=0.0018  Score=51.88  Aligned_cols=23  Identities=26%  Similarity=0.540  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      ..|+|+|++|+|||||+++|.+.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999875

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.96  E-value=0.0016  Score=57.12  Aligned_cols=29  Identities=28%  Similarity=0.362  Sum_probs=25.3

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      ..+..+++.|+.||||||++++|+..+..
T Consensus       164 ~~~~nili~G~tgSGKTT~l~al~~~i~~  192 (323)
T d1g6oa_         164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPK  192 (323)
T ss_dssp             HHTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred             HhCCCEEEEeeccccchHHHHHHhhhccc
Confidence            44567999999999999999999998764

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.96  E-value=0.002  Score=52.01  Aligned_cols=23  Identities=43%  Similarity=0.535  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      +.|+|+|++|+|||||++.+.+.
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            46999999999999999999873

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=95.92  E-value=0.0025  Score=52.25  Aligned_cols=26  Identities=31%  Similarity=0.342  Sum_probs=21.7

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      .+..++|+||+|+||||.+--||..+
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999877777654

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.92  E-value=0.0023  Score=52.05  Aligned_cols=35  Identities=26%  Similarity=0.451  Sum_probs=29.5

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFIS   51 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~   51 (299)
                      +++...+++|+||++||||+++.+|++.++...+.
T Consensus        49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~vis   83 (205)
T d1tuea_          49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS   83 (205)
T ss_dssp             TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred             CCCCceEEEEECCCCccHHHHHHHHHHHhCCEEEe
Confidence            56778899999999999999999999988644333

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.92  E-value=0.0016  Score=51.30  Aligned_cols=22  Identities=23%  Similarity=0.480  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      .|+|+|++|+|||||+++|.+.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999863

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.91  E-value=0.0019  Score=50.44  Aligned_cols=22  Identities=32%  Similarity=0.560  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      .|+|+|++|+|||||+++|.+.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999863

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=95.83  E-value=0.0027  Score=53.90  Aligned_cols=40  Identities=25%  Similarity=0.334  Sum_probs=32.2

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHHhh---cCCeecccch
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGP   55 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~~~   55 (299)
                      -+++.+..+.|+||||||||+++-.++...   +...+++|.+
T Consensus        49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE   91 (263)
T d1u94a1          49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE   91 (263)
T ss_dssp             SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccc
Confidence            578899999999999999999998888754   3455667644

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=95.81  E-value=0.0034  Score=51.53  Aligned_cols=27  Identities=26%  Similarity=0.342  Sum_probs=22.6

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      ..+..++|+||+|+||||.+--||..+
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            457789999999999999877778655

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.0029  Score=51.67  Aligned_cols=27  Identities=11%  Similarity=0.175  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      .|..|.|.|+.|+||||+++.|+..+.
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            567788889999999999999999764

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.79  E-value=0.0027  Score=55.17  Aligned_cols=28  Identities=14%  Similarity=0.128  Sum_probs=24.9

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      +.+-.|+|.|++||||||+++.|...+.
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHHh
Confidence            4567899999999999999999999874

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.79  E-value=0.0021  Score=50.03  Aligned_cols=26  Identities=23%  Similarity=0.468  Sum_probs=22.0

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      +....|+|+|++|+|||||++.+.+.
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34456999999999999999999764

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.78  E-value=0.00083  Score=56.07  Aligned_cols=29  Identities=31%  Similarity=0.478  Sum_probs=21.6

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCC
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQAN   48 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~   48 (299)
                      .++..+|.|+||+|||||+++|.......
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~  124 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLR  124 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-----
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhh
Confidence            46678899999999999999998765433

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=95.74  E-value=0.0034  Score=51.33  Aligned_cols=26  Identities=27%  Similarity=0.212  Sum_probs=21.4

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      .+..++|+||+|+||||.+--||..+
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45668899999999999888788755

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.74  E-value=0.0031  Score=51.06  Aligned_cols=27  Identities=22%  Similarity=0.352  Sum_probs=23.8

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      .|+.|.|-|+.||||||+++.|+..+.
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~   27 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLE   27 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            367889999999999999999998764

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.73  E-value=0.00072  Score=53.37  Aligned_cols=24  Identities=21%  Similarity=0.209  Sum_probs=21.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      ..+|+|+|||||||++.||.-.+.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            677899999999999999997664

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=95.71  E-value=0.0027  Score=48.78  Aligned_cols=23  Identities=35%  Similarity=0.531  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -.|+|+|++++|||||+++|.+.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35899999999999999999864

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=95.68  E-value=0.0022  Score=51.16  Aligned_cols=22  Identities=18%  Similarity=0.394  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      .|+|+|++|+|||||+++|.+.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            5999999999999999999863

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=95.66  E-value=0.0022  Score=49.60  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      .|+|+|++|+|||||++.+.+.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            4899999999999999999773

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=95.66  E-value=0.0035  Score=51.41  Aligned_cols=27  Identities=22%  Similarity=0.246  Sum_probs=18.5

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      +.+..++|+||+|+||||.+--||..+
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            467889999999999999877777654

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.65  E-value=0.0031  Score=51.13  Aligned_cols=27  Identities=26%  Similarity=0.317  Sum_probs=22.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANFI   50 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i   50 (299)
                      .|+|+|+.||||||+++.+. ..|..++
T Consensus         4 iIgITG~igSGKStv~~~l~-~~G~~vi   30 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFT-DLGVPLV   30 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHH-TTTCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHH-HCCCeEE
Confidence            57899999999999999886 4565544

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.63  E-value=0.0035  Score=49.93  Aligned_cols=25  Identities=32%  Similarity=0.436  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      .+.+++|.|++|+||||++-.+...
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            5789999999999999999888764

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=95.58  E-value=0.0028  Score=49.30  Aligned_cols=25  Identities=20%  Similarity=0.284  Sum_probs=21.6

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      +.-.|+|+|.+|||||||++.+.+.
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcC
Confidence            3456999999999999999999874

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.57  E-value=0.0032  Score=50.21  Aligned_cols=25  Identities=36%  Similarity=0.458  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      .+.+++|.|++|+||||++-.+...
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            5889999999999999999888764

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.54  E-value=0.0048  Score=50.39  Aligned_cols=31  Identities=23%  Similarity=0.219  Sum_probs=26.7

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQANFI   50 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i   50 (299)
                      .|+.|.|-|+-||||||+++.|+..+.....
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~~~~   32 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQPNCK   32 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTTSEE
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHhCCE
Confidence            5788999999999999999999998865443

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.49  E-value=0.0052  Score=52.72  Aligned_cols=27  Identities=30%  Similarity=0.465  Sum_probs=22.9

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      ..|-.|+|.|++|||||||++.|...+
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~~~L   51 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIYNHL   51 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHHHHH
Confidence            456688899999999999999887654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=95.45  E-value=0.0039  Score=48.27  Aligned_cols=22  Identities=27%  Similarity=0.324  Sum_probs=19.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      .|+|.|++|+|||||++.+...
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999763

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.42  E-value=0.0045  Score=51.89  Aligned_cols=37  Identities=24%  Similarity=0.436  Sum_probs=28.6

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhc---CCeecccchhh
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPEL   57 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~---~~~i~i~~~~l   57 (299)
                      ..-|+|+|++||||++++++|.....   ..++.++|..+
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~~~   62 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASI   62 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTS
T ss_pred             CCCEEEECCCCcCHHHHHHHHHHhcCCcccccccchhhhh
Confidence            34599999999999999999987543   35667777544

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.42  E-value=0.00079  Score=58.82  Aligned_cols=44  Identities=9%  Similarity=0.033  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773        214 KYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       214 gL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      |.+++++.+.++|.+  -   --...+.-+....+||+||||+|||.|.
T Consensus        26 GQ~~a~~~v~~~v~~--~---~~~l~~~~~p~~~~lf~Gp~GvGKT~la   69 (315)
T d1r6bx3          26 GQDKAIEALTEAIKM--A---RAGLGHEHKPVGSFLFAGPTGVGKTEVT   69 (315)
T ss_dssp             SCHHHHHHHHHHHHH--H---HTTCSCTTSCSEEEEEECSTTSSHHHHH
T ss_pred             ChHHHHHHHHHHHHH--H---HccCCCCCCCceEEEEECCCcchhHHHH
Confidence            456677777777653  1   0111122234456899999999999874

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.38  E-value=0.0046  Score=54.13  Aligned_cols=26  Identities=23%  Similarity=0.307  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      ....|.|.||||+|||||+..|+..+
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            45679999999999999999998754

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.35  E-value=0.004  Score=50.54  Aligned_cols=26  Identities=35%  Similarity=0.399  Sum_probs=21.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcCCe
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQANF   49 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~   49 (299)
                      .|+|+|..||||||+++.+. ..|..+
T Consensus         5 iIgitG~igSGKStv~~~l~-~~G~~v   30 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFA-DLGINV   30 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHH-HTTCEE
T ss_pred             EEEEECCCcCCHHHHHHHHH-HCCCcE
Confidence            68899999999999999986 455443

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.34  E-value=0.0052  Score=51.68  Aligned_cols=29  Identities=17%  Similarity=0.324  Sum_probs=26.2

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      .++.++..++|.|+||+|||+++..++..
T Consensus        30 ~G~~~G~l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          30 LGARGGEVIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             CSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence            47899999999999999999999988864

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.33  E-value=0.0044  Score=51.96  Aligned_cols=29  Identities=28%  Similarity=0.392  Sum_probs=25.0

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      ++.++..++|+|++|+|||||+-.||..+
T Consensus        25 G~~pg~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          25 NMVAGTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45568899999999999999999888754

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.33  E-value=0.004  Score=48.56  Aligned_cols=22  Identities=23%  Similarity=0.413  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      .|+|+|.+|+|||||+++|.+.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999863

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.29  E-value=0.0051  Score=48.64  Aligned_cols=26  Identities=31%  Similarity=0.378  Sum_probs=22.6

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -.+.+++|.|++|+||||++-.+...
T Consensus        13 ~~g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          13 VYGVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            35789999999999999999877765

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.28  E-value=0.0036  Score=53.34  Aligned_cols=25  Identities=32%  Similarity=0.396  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      ...+|+||||||||+++.||+-.++
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~~~lg   49 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIKWVFG   49 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHHTSC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhC
Confidence            3678999999999999999977543

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.27  E-value=0.0047  Score=48.45  Aligned_cols=22  Identities=27%  Similarity=0.369  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      .|+|+|.+|+|||||+++|.+.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5999999999999999999874

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.22  E-value=0.0034  Score=49.52  Aligned_cols=21  Identities=29%  Similarity=0.460  Sum_probs=19.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q psy13773         23 GVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      -|+|+|++++|||||+++|.+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            389999999999999999976

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.0052  Score=47.99  Aligned_cols=21  Identities=24%  Similarity=0.475  Sum_probs=19.0

Q ss_pred             EEEEcCCCChHHHHHHHHHHh
Q psy13773         24 VLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        24 vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      |+++|++|||||+|++.+...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            889999999999999998763

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.17  E-value=0.0053  Score=47.41  Aligned_cols=21  Identities=14%  Similarity=0.297  Sum_probs=19.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q psy13773         23 GVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      -|+|+|.+|+|||||++.+..
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999998876

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.17  E-value=0.006  Score=51.83  Aligned_cols=26  Identities=23%  Similarity=0.358  Sum_probs=22.3

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      ....++|+|..|+||||||+.+.+..
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhh
Confidence            34578899999999999999998753

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.15  E-value=0.0054  Score=47.69  Aligned_cols=21  Identities=29%  Similarity=0.439  Sum_probs=19.3

Q ss_pred             EEEEcCCCChHHHHHHHHHHh
Q psy13773         24 VLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        24 vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      |+++|.+|+|||||++.+...
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            899999999999999998863

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.14  E-value=0.0067  Score=47.62  Aligned_cols=24  Identities=38%  Similarity=0.502  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHh
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      .-.|+|+|.+|+|||||+++|.+.
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            446899999999999999999864

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.11  E-value=0.00094  Score=55.15  Aligned_cols=25  Identities=20%  Similarity=0.157  Sum_probs=22.3

Q ss_pred             CCCCCCCCcccccCCCCCCCeeeec
Q psy13773        239 NQSQSGGPNSAPANESGTGGILLMF  263 (299)
Q Consensus       239 ~~~~~k~s~~l~~g~~gtg~~ll~~  263 (299)
                      .-|+.+.+-+++|||||+|||++..
T Consensus        20 ~GGi~~gsl~li~G~pGsGKT~l~~   44 (242)
T d1tf7a2          20 GGGFFKDSIILATGATGTGKTLLVS   44 (242)
T ss_dssp             TSSEESSCEEEEEECTTSSHHHHHH
T ss_pred             cCCCcCCeEEEEEeCCCCCHHHHHH
Confidence            4678999999999999999999873

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.10  E-value=0.0054  Score=50.51  Aligned_cols=32  Identities=16%  Similarity=0.175  Sum_probs=25.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhcCCeecccch
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQANFISVKGP   55 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~   55 (299)
                      ..|+|+|+.||||||+++.|+...+  +..+++.
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~g--~~~i~~a   33 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNYS--AVKYQLA   33 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSC--EEECCTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCC--CeEEccc
Confidence            3689999999999999999988665  4445543

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.06  E-value=0.0034  Score=53.96  Aligned_cols=25  Identities=12%  Similarity=0.231  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      ..|+|.|++||||||++++|...++
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHh
Confidence            3799999999999999999998775

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.0034  Score=51.45  Aligned_cols=26  Identities=15%  Similarity=0.371  Sum_probs=23.5

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      .+.|.|-|+-||||||+++.|+..+.
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            46799999999999999999999874

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.0058  Score=47.55  Aligned_cols=21  Identities=29%  Similarity=0.588  Sum_probs=19.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q psy13773         23 GVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      -++|+|.+|+|||+|++.++.
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999999987

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.0078  Score=49.35  Aligned_cols=28  Identities=18%  Similarity=0.235  Sum_probs=24.8

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCC
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQAN   48 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~   48 (299)
                      |+.|.|-|+-||||||+++.|+..+...
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~~   29 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPEW   29 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhhc
Confidence            5789999999999999999999987643

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.0059  Score=47.27  Aligned_cols=22  Identities=23%  Similarity=0.446  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -|+|+|.+|+|||+|++.+...
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3899999999999999998873

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.03  E-value=0.0062  Score=47.36  Aligned_cols=20  Identities=40%  Similarity=0.614  Sum_probs=18.7

Q ss_pred             EEEEcCCCChHHHHHHHHHH
Q psy13773         24 VLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        24 vLL~Gp~GsGKTtLlr~La~   43 (299)
                      |+|+|++|+|||||++.+..
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999999876

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=95.02  E-value=0.0026  Score=47.18  Aligned_cols=25  Identities=12%  Similarity=0.146  Sum_probs=21.1

Q ss_pred             CCCCCCCCcccccCCCCCCCeeeec
Q psy13773        239 NQSQSGGPNSAPANESGTGGILLMF  263 (299)
Q Consensus       239 ~~~~~k~s~~l~~g~~gtg~~ll~~  263 (299)
                      ++-++|.-..++++|||+|||+.++
T Consensus         1 ~~~l~~~~~~il~~~tGsGKT~~~~   25 (140)
T d1yksa1           1 SHMLKKGMTTVLDFHPGAGKTRRFL   25 (140)
T ss_dssp             CCTTSTTCEEEECCCTTSSTTTTHH
T ss_pred             ChHHHcCCcEEEEcCCCCChhHHHH
Confidence            3557888889999999999998765

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.01  E-value=0.0066  Score=53.64  Aligned_cols=29  Identities=28%  Similarity=0.306  Sum_probs=23.1

Q ss_pred             CCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         18 MQPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      +..+...+|+|++|+|||+++.||+-.++
T Consensus        22 f~~~~l~~i~G~NGsGKS~ileAi~~~lg   50 (427)
T d1w1wa_          22 FGESNFTSIIGPNGSGKSNMMDAISFVLG   50 (427)
T ss_dssp             CTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34455678999999999999999976443

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.99  E-value=0.0081  Score=51.03  Aligned_cols=41  Identities=22%  Similarity=0.297  Sum_probs=32.0

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHHhh---cCCeecccchh
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPE   56 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~~~~   56 (299)
                      -+++.+..+.|+||+|+|||+++-.++...   +...++||...
T Consensus        55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~   98 (269)
T d1mo6a1          55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH   98 (269)
T ss_dssp             SSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence            578999999999999999999987777643   34456776443

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.0067  Score=46.89  Aligned_cols=22  Identities=27%  Similarity=0.453  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -|+|+|.+|+|||+|++.+...
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999999873

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.96  E-value=0.0076  Score=52.58  Aligned_cols=26  Identities=27%  Similarity=0.317  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      ....|.|.||||+|||||+..|+..+
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            45579999999999999999999754

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=94.94  E-value=0.005  Score=47.92  Aligned_cols=28  Identities=21%  Similarity=0.318  Sum_probs=22.9

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHH
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      +.-.....|+|+|.+++|||||+++|.+
T Consensus        11 ~p~~~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          11 LPSDTGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCCccCCEEEEECCCCCCHHHHHHHHhC
Confidence            3334456799999999999999999866

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.94  E-value=0.003  Score=49.63  Aligned_cols=21  Identities=33%  Similarity=0.466  Sum_probs=19.3

Q ss_pred             EEEEcCCCChHHHHHHHHHHh
Q psy13773         24 VLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        24 vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      |+|+|.+++|||||+++|.+.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999763

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0059  Score=48.14  Aligned_cols=20  Identities=30%  Similarity=0.461  Sum_probs=18.8

Q ss_pred             EEEEcCCCChHHHHHHHHHH
Q psy13773         24 VLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        24 vLL~Gp~GsGKTtLlr~La~   43 (299)
                      |+|+|++|+|||||++.+..
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            88999999999999999886

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.0066  Score=47.19  Aligned_cols=21  Identities=24%  Similarity=0.396  Sum_probs=19.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q psy13773         23 GVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      -|+|+|.+|||||+|++.+..
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            499999999999999998876

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.92  E-value=0.00098  Score=55.12  Aligned_cols=24  Identities=17%  Similarity=0.090  Sum_probs=21.6

Q ss_pred             CCCCCCCcccccCCCCCCCeeeec
Q psy13773        240 QSQSGGPNSAPANESGTGGILLMF  263 (299)
Q Consensus       240 ~~~~k~s~~l~~g~~gtg~~ll~~  263 (299)
                      -|+...+-+++|||||||||++..
T Consensus        31 GGlp~G~~~li~G~pGsGKT~~~l   54 (254)
T d1pzna2          31 GGIETQAITEVFGEFGSGKTQLAH   54 (254)
T ss_dssp             SSEESSEEEEEEESTTSSHHHHHH
T ss_pred             CCccCCEEEEEEcCCCCCHHHHHH
Confidence            478999999999999999999854

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.91  E-value=0.0022  Score=49.23  Aligned_cols=22  Identities=32%  Similarity=0.581  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -|+|+|.+++|||||+++|.+.
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999875

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.007  Score=47.29  Aligned_cols=21  Identities=29%  Similarity=0.490  Sum_probs=19.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q psy13773         23 GVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      -++++|++|+|||||++.+..
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999998876

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=94.88  E-value=0.0082  Score=50.95  Aligned_cols=40  Identities=30%  Similarity=0.371  Sum_probs=32.3

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHHhh---cCCeecccch
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGP   55 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~~~   55 (299)
                      -+++.++.+.++||+|||||+++..++...   +...++||.+
T Consensus        52 GGip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE   94 (268)
T d1xp8a1          52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE   94 (268)
T ss_dssp             SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECC
Confidence            467899999999999999999999888754   3455677643

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.87  E-value=0.0015  Score=53.23  Aligned_cols=23  Identities=9%  Similarity=-0.023  Sum_probs=20.4

Q ss_pred             CCCCCCCcccccCCCCCCCeeee
Q psy13773        240 QSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       240 ~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .|..|+.-+++||||+||||++.
T Consensus        48 ~~~PKkn~i~~~GP~~TGKS~f~   70 (205)
T d1tuea_          48 KGTPKKNCLVFCGPANTGKSYFG   70 (205)
T ss_dssp             HTCTTCSEEEEESCGGGCHHHHH
T ss_pred             cCCCCceEEEEECCCCccHHHHH
Confidence            56689999999999999999875

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.0069  Score=46.97  Aligned_cols=21  Identities=29%  Similarity=0.490  Sum_probs=19.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q psy13773         23 GVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      -|+|+|.+|+|||||++.+..
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999998876

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=94.83  E-value=0.0063  Score=47.32  Aligned_cols=23  Identities=35%  Similarity=0.489  Sum_probs=20.4

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHH
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      .-.|+++|++|+|||||++.+..
T Consensus        16 ~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          16 EVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEEEECCCCCCHHHHHHHHhc
Confidence            34699999999999999999866

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.83  E-value=0.0075  Score=48.21  Aligned_cols=24  Identities=21%  Similarity=0.351  Sum_probs=21.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      .|.|.|.-||||||+++.|+..+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            477889999999999999998764

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.83  E-value=0.0072  Score=46.73  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHH
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      .-|+|+|.+|+|||+|++.+..
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4589999999999999999876

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.82  E-value=0.0076  Score=46.58  Aligned_cols=21  Identities=24%  Similarity=0.422  Sum_probs=19.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q psy13773         23 GVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      -|+|+|.+|+|||+|++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999999886

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.82  E-value=0.0073  Score=46.65  Aligned_cols=21  Identities=29%  Similarity=0.577  Sum_probs=19.2

Q ss_pred             EEEEcCCCChHHHHHHHHHHh
Q psy13773         24 VLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        24 vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      |+++|.+|+|||||++.++..
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998863

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.80  E-value=0.0077  Score=47.37  Aligned_cols=20  Identities=40%  Similarity=0.624  Sum_probs=18.8

Q ss_pred             EEEEcCCCChHHHHHHHHHH
Q psy13773         24 VLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        24 vLL~Gp~GsGKTtLlr~La~   43 (299)
                      |+|+|.+|||||||++.+..
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999999886

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.75  E-value=0.0014  Score=54.01  Aligned_cols=24  Identities=17%  Similarity=0.011  Sum_probs=21.6

Q ss_pred             CCCCCCCCcccccCCCCCCCeeee
Q psy13773        239 NQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       239 ~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      .-|+.+.+-++++||||||||++-
T Consensus        31 gGGip~G~~~~i~G~~GsGKT~la   54 (258)
T d1v5wa_          31 GGGIESMAITEAFGEFRTGKTQLS   54 (258)
T ss_dssp             TSSBCSSEEEEEECCTTCTHHHHH
T ss_pred             cCCCcCCEEEEEECCCCCCHHHHH
Confidence            358999999999999999999873

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.75  E-value=0.0083  Score=46.13  Aligned_cols=20  Identities=25%  Similarity=0.433  Sum_probs=18.8

Q ss_pred             EEEEcCCCChHHHHHHHHHH
Q psy13773         24 VLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        24 vLL~Gp~GsGKTtLlr~La~   43 (299)
                      |+|+|.+|+|||+|++.+..
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999999886

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.74  E-value=0.0098  Score=48.02  Aligned_cols=27  Identities=7%  Similarity=0.026  Sum_probs=24.3

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      .+..++|+||+|+|||++++.++....
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~   40 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVE   40 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHh
Confidence            567899999999999999999998664

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.74  E-value=0.0034  Score=51.06  Aligned_cols=18  Identities=17%  Similarity=0.171  Sum_probs=15.3

Q ss_pred             CcccccCCCCCCCeeeec
Q psy13773        246 PNSAPANESGTGGILLMF  263 (299)
Q Consensus       246 s~~l~~g~~gtg~~ll~~  263 (299)
                      .++|||||||+|||.+-.
T Consensus        25 h~lLl~Gp~G~GKtt~a~   42 (207)
T d1a5ta2          25 HALLIQALPGMGDDALIY   42 (207)
T ss_dssp             SEEEEECCTTSCHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHH
Confidence            358999999999998754

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.0085  Score=46.49  Aligned_cols=22  Identities=23%  Similarity=0.480  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -|+|+|++|+|||+|++.+...
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999999873

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.69  E-value=0.0087  Score=46.29  Aligned_cols=21  Identities=29%  Similarity=0.333  Sum_probs=19.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q psy13773         23 GVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      -|+|+|.+|||||+|++.+..
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998876

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=94.66  E-value=0.0016  Score=50.68  Aligned_cols=16  Identities=19%  Similarity=0.229  Sum_probs=14.0

Q ss_pred             cccccCCCCCCCeeee
Q psy13773        247 NSAPANESGTGGILLM  262 (299)
Q Consensus       247 ~~l~~g~~gtg~~ll~  262 (299)
                      .|++.||||||||+|-
T Consensus         9 ~I~i~G~~GsGKTTla   24 (192)
T d1lw7a2           9 TVAILGGESSGKSVLV   24 (192)
T ss_dssp             EEEEECCTTSHHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3899999999999873

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.64  E-value=0.0091  Score=46.16  Aligned_cols=21  Identities=24%  Similarity=0.392  Sum_probs=19.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q psy13773         23 GVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      -|+|+|.+|+|||+|++.+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999999886

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.62  E-value=0.0087  Score=46.02  Aligned_cols=20  Identities=30%  Similarity=0.479  Sum_probs=18.7

Q ss_pred             EEEEcCCCChHHHHHHHHHH
Q psy13773         24 VLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        24 vLL~Gp~GsGKTtLlr~La~   43 (299)
                      |+|+|.+|+|||+|++.+..
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999886

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.56  E-value=0.0018  Score=51.51  Aligned_cols=25  Identities=16%  Similarity=0.084  Sum_probs=21.8

Q ss_pred             CCCCCCCCcccccCCCCCCCeeeec
Q psy13773        239 NQSQSGGPNSAPANESGTGGILLMF  263 (299)
Q Consensus       239 ~~~~~k~s~~l~~g~~gtg~~ll~~  263 (299)
                      .-|+...+-+++|||||+|||.|..
T Consensus        17 ~GGi~~G~v~~i~G~~GsGKT~l~l   41 (242)
T d1n0wa_          17 QGGIETGSITEMFGEFRTGKTQICH   41 (242)
T ss_dssp             TTSEETTSEEEEECCTTSSHHHHHH
T ss_pred             cCCCcCCEEEEEEeCCCCCHHHHHH
Confidence            4588899999999999999998763

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.0096  Score=46.15  Aligned_cols=21  Identities=19%  Similarity=0.382  Sum_probs=19.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q psy13773         23 GVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      -|+++|.+|+|||+|++.+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999986

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.0096  Score=46.55  Aligned_cols=21  Identities=29%  Similarity=0.517  Sum_probs=19.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q psy13773         23 GVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      -|+++|.+|+|||+|++.+..
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999999886

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.52  E-value=0.0093  Score=46.26  Aligned_cols=21  Identities=43%  Similarity=0.776  Sum_probs=19.1

Q ss_pred             EEEEcCCCChHHHHHHHHHHh
Q psy13773         24 VLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        24 vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      |+|+|.+|+|||+|++.+.+.
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCcCHHHHHHHHhCC
Confidence            789999999999999998763

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.51  E-value=0.0022  Score=48.67  Aligned_cols=14  Identities=14%  Similarity=0.095  Sum_probs=12.8

Q ss_pred             ccccCCCCCCCeee
Q psy13773        248 SAPANESGTGGILL  261 (299)
Q Consensus       248 ~l~~g~~gtg~~ll  261 (299)
                      |+++||||+|||+|
T Consensus         5 Iii~G~pGsGKTTl   18 (152)
T d1ly1a_           5 ILTIGCPGSGKSTW   18 (152)
T ss_dssp             EEEECCTTSSHHHH
T ss_pred             EEEECCCCCCHHHH
Confidence            77899999999986

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.50  E-value=0.012  Score=48.93  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=20.9

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHH
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      .+.++|.|||.+||||++|.++-
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHHH
Confidence            46789999999999999999887

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.49  E-value=0.0081  Score=50.45  Aligned_cols=24  Identities=33%  Similarity=0.473  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHh
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      .-.|+|+|.+|+|||||+++|.+.
T Consensus        32 ~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          32 SLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCcHHHHHHHHhCC
Confidence            457999999999999999999874

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.48  E-value=0.0099  Score=46.33  Aligned_cols=21  Identities=24%  Similarity=0.395  Sum_probs=19.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q psy13773         23 GVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      -|+|+|.+|+|||+|++.+..
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998876

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.45  E-value=0.0099  Score=46.40  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -|+|+|.+|+|||+|++.+...
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998874

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.41  E-value=0.01  Score=46.10  Aligned_cols=20  Identities=30%  Similarity=0.496  Sum_probs=18.7

Q ss_pred             EEEEcCCCChHHHHHHHHHH
Q psy13773         24 VLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        24 vLL~Gp~GsGKTtLlr~La~   43 (299)
                      |+|+|.+|+|||+|++.+..
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999999875

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.40  E-value=0.011  Score=45.97  Aligned_cols=20  Identities=30%  Similarity=0.529  Sum_probs=18.6

Q ss_pred             EEEEcCCCChHHHHHHHHHH
Q psy13773         24 VLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        24 vLL~Gp~GsGKTtLlr~La~   43 (299)
                      |+|+|.+|+|||+|++.+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            88999999999999988876

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=94.38  E-value=0.003  Score=48.84  Aligned_cols=19  Identities=26%  Similarity=0.309  Sum_probs=16.0

Q ss_pred             CCCCcccccCCCCCCCeee
Q psy13773        243 SGGPNSAPANESGTGGILL  261 (299)
Q Consensus       243 ~k~s~~l~~g~~gtg~~ll  261 (299)
                      .|.-.|++.||||+|||++
T Consensus         3 pk~~~I~i~G~~GsGKTT~   21 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSM   21 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHH
Confidence            4556699999999999975

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.27  E-value=0.0018  Score=52.57  Aligned_cols=25  Identities=24%  Similarity=0.303  Sum_probs=22.2

Q ss_pred             CCCCCCCCCcccccCCCCCCCeeee
Q psy13773        238 PNQSQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       238 ~~~~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      ..-|+.+.+-+++|||||+|||++.
T Consensus        19 l~GGi~~G~~~~I~G~~G~GKT~la   43 (242)
T d1tf7a1          19 SHGGLPIGRSTLVSGTSGTGKTLFS   43 (242)
T ss_dssp             TTSSEETTSEEEEEESTTSSHHHHH
T ss_pred             hcCCCcCCeEEEEEeCCCCCHHHHH
Confidence            4568899999999999999999875

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.25  E-value=0.011  Score=46.92  Aligned_cols=20  Identities=30%  Similarity=0.567  Sum_probs=18.8

Q ss_pred             EEEEcCCCChHHHHHHHHHH
Q psy13773         24 VLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        24 vLL~Gp~GsGKTtLlr~La~   43 (299)
                      |+|+|++|+|||||++.+..
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            88999999999999999886

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=94.21  E-value=0.003  Score=48.64  Aligned_cols=16  Identities=31%  Similarity=0.451  Sum_probs=13.8

Q ss_pred             CcccccCCCCCCCeee
Q psy13773        246 PNSAPANESGTGGILL  261 (299)
Q Consensus       246 s~~l~~g~~gtg~~ll  261 (299)
                      +.|++-||||+|||++
T Consensus         5 ~~I~i~G~pGsGKTTi   20 (173)
T d1rkba_           5 PNILLTGTPGVGKTTL   20 (173)
T ss_dssp             CCEEEECSTTSSHHHH
T ss_pred             CEEEEECCCCCCHHHH
Confidence            4688999999999974

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=94.17  E-value=0.0067  Score=47.26  Aligned_cols=23  Identities=22%  Similarity=0.296  Sum_probs=20.4

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHH
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      .-.|+|+|++|+|||||++.+..
T Consensus        12 ~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          12 EMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTTC
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            44689999999999999999875

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.17  E-value=0.013  Score=45.40  Aligned_cols=21  Identities=29%  Similarity=0.460  Sum_probs=19.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q psy13773         23 GVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      -|+|+|.+|+|||+|++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999999876

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=94.15  E-value=0.011  Score=46.34  Aligned_cols=27  Identities=26%  Similarity=0.382  Sum_probs=22.6

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHH
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      +-.+---|+|+|++|+|||||++.+..
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhc
Confidence            345566799999999999999999865

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.14  E-value=0.013  Score=45.28  Aligned_cols=21  Identities=33%  Similarity=0.525  Sum_probs=19.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q psy13773         23 GVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      -++++|++|+|||+|++.+..
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999998876

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.11  E-value=0.013  Score=45.91  Aligned_cols=22  Identities=23%  Similarity=0.280  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -|+|+|.+|+|||+|++.+...
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999998863

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.10  E-value=0.018  Score=48.63  Aligned_cols=30  Identities=30%  Similarity=0.509  Sum_probs=26.5

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      ..+....+.|+||+++|||+++.+|+..++
T Consensus       100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg  129 (267)
T d1u0ja_         100 KFGKRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             CSTTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCCccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            446677899999999999999999999885

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.06  E-value=0.014  Score=44.97  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -|+|+|.+|+|||+|++.+...
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3889999999999999998863

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.03  E-value=0.013  Score=45.67  Aligned_cols=20  Identities=40%  Similarity=0.654  Sum_probs=18.7

Q ss_pred             EEEEcCCCChHHHHHHHHHH
Q psy13773         24 VLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        24 vLL~Gp~GsGKTtLlr~La~   43 (299)
                      |+|+|.+|+|||+|++.+..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999999876

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.01  E-value=0.015  Score=44.97  Aligned_cols=21  Identities=14%  Similarity=0.363  Sum_probs=18.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q psy13773         23 GVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      -++++|.+|+|||+|++.+..
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998776

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.00  E-value=0.015  Score=45.08  Aligned_cols=21  Identities=24%  Similarity=0.385  Sum_probs=19.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q psy13773         23 GVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      -|+|+|.+|||||+|++.++.
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478899999999999999886

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.97  E-value=0.0085  Score=46.68  Aligned_cols=20  Identities=30%  Similarity=0.509  Sum_probs=8.6

Q ss_pred             EEEEcCCCChHHHHHHHHHH
Q psy13773         24 VLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        24 vLL~Gp~GsGKTtLlr~La~   43 (299)
                      |+|+|.+|||||||++.+..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999998875

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.93  E-value=0.016  Score=51.18  Aligned_cols=23  Identities=30%  Similarity=0.420  Sum_probs=18.6

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHH
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      ...++|.|||||||||++..+..
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l~  185 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLLA  185 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHHH
Confidence            56899999999999998865443

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.86  E-value=0.011  Score=52.92  Aligned_cols=28  Identities=32%  Similarity=0.421  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      .+.-.+++.||.|+||||++.++...+.
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence            4455688889999999999999998764

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=93.83  E-value=0.016  Score=45.47  Aligned_cols=21  Identities=29%  Similarity=0.466  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q psy13773         23 GVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      .|.|+|.+++|||||+++|.+
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            589999999999999999985

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.78  E-value=0.016  Score=45.56  Aligned_cols=21  Identities=33%  Similarity=0.371  Sum_probs=19.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q psy13773         23 GVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      -|+|+|.+|+|||+|++.+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            388999999999999999876

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.74  E-value=0.022  Score=48.70  Aligned_cols=31  Identities=29%  Similarity=0.409  Sum_probs=27.0

Q ss_pred             CCCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      +.+-.|..++|+|++|+|||+|+..|+....
T Consensus        38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             SCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             ccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence            3567899999999999999999999998553

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.73  E-value=0.0042  Score=50.86  Aligned_cols=16  Identities=25%  Similarity=0.183  Sum_probs=14.5

Q ss_pred             cccccCCCCCCCeeee
Q psy13773        247 NSAPANESGTGGILLM  262 (299)
Q Consensus       247 ~~l~~g~~gtg~~ll~  262 (299)
                      .+++|||||||||.|.
T Consensus        38 ~l~l~G~~G~GKTHLl   53 (213)
T d1l8qa2          38 PIFIYGSVGTGKTHLL   53 (213)
T ss_dssp             SEEEECSSSSSHHHHH
T ss_pred             cEEEECCCCCcHHHHH
Confidence            3799999999999887

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.58  E-value=0.02  Score=47.06  Aligned_cols=23  Identities=30%  Similarity=0.323  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      +.++|.|||.+||||++|.++-.
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHHH
Confidence            46899999999999999988863

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.51  E-value=0.019  Score=44.98  Aligned_cols=21  Identities=33%  Similarity=0.610  Sum_probs=19.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q psy13773         23 GVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      -|+|+|.+|+|||+|++.+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998876

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.49  E-value=0.0096  Score=46.32  Aligned_cols=21  Identities=29%  Similarity=0.423  Sum_probs=18.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q psy13773         23 GVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      -|+++|.+|+|||+|++.++.
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999998765

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.46  E-value=0.02  Score=45.28  Aligned_cols=22  Identities=23%  Similarity=0.280  Sum_probs=19.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -|+|+|.+|+|||+|++.+...
T Consensus         5 KvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3889999999999999988763

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.41  E-value=0.0048  Score=47.54  Aligned_cols=18  Identities=17%  Similarity=0.060  Sum_probs=15.3

Q ss_pred             CCCcccccCCCCCCCeee
Q psy13773        244 GGPNSAPANESGTGGILL  261 (299)
Q Consensus       244 k~s~~l~~g~~gtg~~ll  261 (299)
                      +..-+++.||||+|||++
T Consensus         5 ~~~iivl~G~~GsGKsT~   22 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAV   22 (171)
T ss_dssp             TSEEEEEECSTTSCHHHH
T ss_pred             CCeEEEEECCCCCCHHHH
Confidence            455688999999999986

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.38  E-value=0.022  Score=47.90  Aligned_cols=23  Identities=30%  Similarity=0.365  Sum_probs=17.0

Q ss_pred             cEEEEEcCCCChHHHH-HHHHHHh
Q psy13773         22 RGVLFYGPPGCGKTLL-AKAIANE   44 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtL-lr~La~~   44 (299)
                      ..++|.|++||||||+ +..++..
T Consensus        15 ~~~lI~g~aGTGKTt~l~~rv~~l   38 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVITNKIAHL   38 (306)
T ss_dssp             SEEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEeeCCccHHHHHHHHHHHH
Confidence            4488999999999975 4544443

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.30  E-value=0.0059  Score=49.36  Aligned_cols=19  Identities=21%  Similarity=0.272  Sum_probs=17.1

Q ss_pred             CCCCcccccCCCCCCCeee
Q psy13773        243 SGGPNSAPANESGTGGILL  261 (299)
Q Consensus       243 ~k~s~~l~~g~~gtg~~ll  261 (299)
                      +++++++|.||||+|||-+
T Consensus        41 ~~k~n~lLvG~pGVGKTal   59 (195)
T d1jbka_          41 RTKNNPVLIGEPGVGKTAI   59 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHH
T ss_pred             cCCCCeEEEecCCcccHHH
Confidence            6778999999999999976

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.22  E-value=0.021  Score=44.93  Aligned_cols=20  Identities=25%  Similarity=0.473  Sum_probs=18.3

Q ss_pred             EEEEEcCCCChHHHHHHHHH
Q psy13773         23 GVLFYGPPGCGKTLLAKAIA   42 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La   42 (299)
                      -++|.|.+|+|||+|++.+.
T Consensus         4 KivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            48899999999999999984

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.19  E-value=0.024  Score=48.21  Aligned_cols=24  Identities=29%  Similarity=0.331  Sum_probs=17.6

Q ss_pred             cEEEEEcCCCChHHHH-HHHHHHhh
Q psy13773         22 RGVLFYGPPGCGKTLL-AKAIANEC   45 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtL-lr~La~~l   45 (299)
                      ..++|.|++||||||+ +..++..+
T Consensus        25 g~~lV~g~aGSGKTt~l~~ri~~ll   49 (318)
T d1pjra1          25 GPLLIMAGAGSGKTRVLTHRIAYLM   49 (318)
T ss_dssp             SCEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCccHHHHHHHHHHHHH
Confidence            4588999999999974 44555544

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.15  E-value=0.0048  Score=53.65  Aligned_cols=17  Identities=18%  Similarity=0.001  Sum_probs=14.4

Q ss_pred             CCcccccCCCCCCCeee
Q psy13773        245 GPNSAPANESGTGGILL  261 (299)
Q Consensus       245 ~s~~l~~g~~gtg~~ll  261 (299)
                      ...+||+||+|||||.|
T Consensus        53 ~~~~lf~Gp~G~GKt~l   69 (315)
T d1qvra3          53 IGSFLFLGPTGVGKTEL   69 (315)
T ss_dssp             SEEEEEBSCSSSSHHHH
T ss_pred             ceEEEEECCCcchHHHH
Confidence            34579999999999986

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=93.10  E-value=0.0047  Score=51.08  Aligned_cols=17  Identities=18%  Similarity=0.157  Sum_probs=15.4

Q ss_pred             CcccccCCCCCCCeeee
Q psy13773        246 PNSAPANESGTGGILLM  262 (299)
Q Consensus       246 s~~l~~g~~gtg~~ll~  262 (299)
                      ..+++|||+|+|||.|+
T Consensus        30 ~~i~i~G~~G~GKTsLl   46 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSII   46 (283)
T ss_dssp             SEEEEEESTTSSHHHHH
T ss_pred             CEEEEEcCCCCcHHHHH
Confidence            47999999999999886

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.09  E-value=0.0024  Score=52.12  Aligned_cols=27  Identities=15%  Similarity=0.097  Sum_probs=23.1

Q ss_pred             CCCCCCCCCcccccCCCCCCCeeeecc
Q psy13773        238 PNQSQSGGPNSAPANESGTGGILLMFP  264 (299)
Q Consensus       238 ~~~~~~k~s~~l~~g~~gtg~~ll~~~  264 (299)
                      ..-|+...+-++++||||+|||++..-
T Consensus        27 l~GGl~~G~l~~i~G~~G~GKT~~~l~   53 (258)
T d2i1qa2          27 LGGGLESQSVTEFAGVFGSGKTQIMHQ   53 (258)
T ss_dssp             TTSSEETTEEEEEEESTTSSHHHHHHH
T ss_pred             cCCCccCCeEEEEEeCCCCCHHHHHHH
Confidence            445788999999999999999998654

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.82  E-value=0.027  Score=45.77  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHH
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      --|+|.|.+|+|||||++.+..
T Consensus         7 ~KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3589999999999999998865

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.58  E-value=0.035  Score=43.34  Aligned_cols=23  Identities=17%  Similarity=0.169  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -.++++|.+|+|||+|++.+...
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999988773

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=92.35  E-value=0.0083  Score=46.13  Aligned_cols=16  Identities=13%  Similarity=-0.076  Sum_probs=13.6

Q ss_pred             CCcccccCCCCCCCee
Q psy13773        245 GPNSAPANESGTGGIL  260 (299)
Q Consensus       245 ~s~~l~~g~~gtg~~l  260 (299)
                      .=-|+|.|+||+|||+
T Consensus         6 g~~I~l~G~~GsGKTT   21 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDA   21 (183)
T ss_dssp             CEEEEEECSTTSSHHH
T ss_pred             CeEEEEECCCCCCHHH
Confidence            3458999999999996

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.27  E-value=0.036  Score=43.25  Aligned_cols=22  Identities=23%  Similarity=0.330  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      -++|.|..|+|||+|++.+...
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999764

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.07  E-value=0.032  Score=45.54  Aligned_cols=24  Identities=42%  Similarity=0.436  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      ..++|.|.-|+|||||++.+....
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhcC
Confidence            468899999999999999998753

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=91.85  E-value=0.012  Score=49.84  Aligned_cols=19  Identities=26%  Similarity=0.298  Sum_probs=16.9

Q ss_pred             CCCCcccccCCCCCCCeee
Q psy13773        243 SGGPNSAPANESGTGGILL  261 (299)
Q Consensus       243 ~k~s~~l~~g~~gtg~~ll  261 (299)
                      ++++++||-||||+|||.+
T Consensus        37 ~~k~n~lLVG~~GvGKTal   55 (268)
T d1r6bx2          37 RRKNNPLLVGESGVGKTAI   55 (268)
T ss_dssp             SSSCEEEEECCTTSSHHHH
T ss_pred             CccCCcEEECCCCCcHHHH
Confidence            5678999999999999965

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.78  E-value=0.045  Score=48.79  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=21.5

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHH
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      .+-.|+|+|.+|+|||||+++|.+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            356799999999999999999986

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.52  E-value=0.13  Score=43.40  Aligned_cols=53  Identities=25%  Similarity=0.340  Sum_probs=35.2

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhhc-CC-eecccchhhhhccccccHHHHHHHHHH
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQ-AN-FISVKGPELLTMWFGESEANVRDIFDK   75 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-~~-~i~i~~~~l~~~~~g~~~~~i~~~f~~   75 (299)
                      .+-.|..++|+|++|+|||+|+..++.... .+ .+.|-     . -+|+..+.+.++++.
T Consensus        64 pigkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~-----~-~iGer~~ev~~~~~~  118 (276)
T d2jdid3          64 PYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF-----A-GVGERTREGNDLYHE  118 (276)
T ss_dssp             CEETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSEEEE-----E-EESCCHHHHHHHHHH
T ss_pred             cccCCCEEEeeCCCCCCHHHHHHHHHHHHHhhCCCeEEE-----E-EeccChHHHHHHHHH
Confidence            456788999999999999999999987532 11 11111     1 356666666665543

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=91.51  E-value=0.031  Score=48.28  Aligned_cols=32  Identities=28%  Similarity=0.632  Sum_probs=22.5

Q ss_pred             eccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHH
Q psy13773          4 TYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAK   39 (299)
Q Consensus         4 ~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr   39 (299)
                      ++||.|....   + +.+...+++|.+|+|||||..
T Consensus         1 ~lpmh~san~---~-~~~~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1           1 VFPMHASANV---G-KEGDVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             CEEEECEEEE---C-TTCCEEEEEECTTSCHHHHTC
T ss_pred             Cccccccccc---C-CCCCEEEEEccCCCCcccccc
Confidence            3566663322   2 346789999999999999653

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=91.30  E-value=0.068  Score=43.47  Aligned_cols=23  Identities=30%  Similarity=0.254  Sum_probs=20.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      .|+|.|.+.+|||||+++|.+..
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhhc
Confidence            49999999999999999998754

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.24  E-value=0.052  Score=42.11  Aligned_cols=21  Identities=24%  Similarity=0.422  Sum_probs=18.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q psy13773         23 GVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      -++|+|..|+|||+|++.+..
T Consensus         4 KivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            489999999999999998865

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=91.23  E-value=0.011  Score=46.83  Aligned_cols=19  Identities=16%  Similarity=-0.062  Sum_probs=15.5

Q ss_pred             CCCCcccccCCCCCCCeee
Q psy13773        243 SGGPNSAPANESGTGGILL  261 (299)
Q Consensus       243 ~k~s~~l~~g~~gtg~~ll  261 (299)
                      .|-.-|++.||||+|||++
T Consensus         4 ~kp~iI~i~G~pGSGKsT~   22 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQ   22 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHH
T ss_pred             CCCcEEEEECCCCCCHHHH
Confidence            3445789999999999964

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.10  E-value=0.014  Score=46.22  Aligned_cols=19  Identities=11%  Similarity=-0.127  Sum_probs=16.0

Q ss_pred             CCCCcccccCCCCCCCeee
Q psy13773        243 SGGPNSAPANESGTGGILL  261 (299)
Q Consensus       243 ~k~s~~l~~g~~gtg~~ll  261 (299)
                      .+.+-|++.||||+|||++
T Consensus         6 ~~~~iI~i~GppGSGKsT~   24 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQ   24 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHH
T ss_pred             CCCcEEEEECCCCCCHHHH
Confidence            3577899999999999864

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=91.09  E-value=0.011  Score=50.06  Aligned_cols=24  Identities=13%  Similarity=0.041  Sum_probs=21.4

Q ss_pred             CCCCCCCcccccCCCCCCCeeeec
Q psy13773        240 QSQSGGPNSAPANESGTGGILLMF  263 (299)
Q Consensus       240 ~~~~k~s~~l~~g~~gtg~~ll~~  263 (299)
                      -|+....-+++|||||+|||.|++
T Consensus        49 GGi~~g~itei~G~~gsGKTtl~l   72 (263)
T d1u94a1          49 GGLPMGRIVEIYGPESSGKTTLTL   72 (263)
T ss_dssp             SSEETTSEEEEECSTTSSHHHHHH
T ss_pred             CCccCceEEEEecCCCcHHHHHHH
Confidence            477888999999999999999875

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=91.06  E-value=0.013  Score=51.72  Aligned_cols=17  Identities=24%  Similarity=0.200  Sum_probs=13.9

Q ss_pred             CcccccCCCCCCCeeee
Q psy13773        246 PNSAPANESGTGGILLM  262 (299)
Q Consensus       246 s~~l~~g~~gtg~~ll~  262 (299)
                      .-.++.||||||||.++
T Consensus       164 ~~~vI~G~pGTGKTt~i  180 (359)
T d1w36d1         164 RISVISGGPGTGKTTTV  180 (359)
T ss_dssp             SEEEEECCTTSTHHHHH
T ss_pred             CeEEEEcCCCCCceehH
Confidence            35789999999999653

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.61  E-value=0.0077  Score=47.30  Aligned_cols=15  Identities=20%  Similarity=0.149  Sum_probs=13.2

Q ss_pred             cccccCCCCCCCeee
Q psy13773        247 NSAPANESGTGGILL  261 (299)
Q Consensus       247 ~~l~~g~~gtg~~ll  261 (299)
                      -|+|.|+||+|||++
T Consensus        21 vI~L~G~pGSGKTTi   35 (195)
T d1x6va3          21 TVWLTGLSGAGKTTV   35 (195)
T ss_dssp             EEEEESSCHHHHHHH
T ss_pred             EEEEECCCCCCHHHH
Confidence            378999999999975

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=90.47  E-value=0.016  Score=48.81  Aligned_cols=15  Identities=13%  Similarity=0.246  Sum_probs=12.8

Q ss_pred             ccccCCCCCCCeeee
Q psy13773        248 SAPANESGTGGILLM  262 (299)
Q Consensus       248 ~l~~g~~gtg~~ll~  262 (299)
                      .|.-||||||||..+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            578899999999765

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=90.40  E-value=0.044  Score=40.00  Aligned_cols=20  Identities=25%  Similarity=0.227  Sum_probs=17.4

Q ss_pred             CCCcEEEEEcCCCChHHHHH
Q psy13773         19 QPSRGVLFYGPPGCGKTLLA   38 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLl   38 (299)
                      ..++.++|+.|+|+|||..+
T Consensus         5 ~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTH
T ss_pred             HcCCcEEEEcCCCCChhHHH
Confidence            56889999999999999655

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=90.12  E-value=0.019  Score=45.56  Aligned_cols=16  Identities=19%  Similarity=0.181  Sum_probs=13.2

Q ss_pred             CcccccCCCCCCCeee
Q psy13773        246 PNSAPANESGTGGILL  261 (299)
Q Consensus       246 s~~l~~g~~gtg~~ll  261 (299)
                      --|++.||||+|||++
T Consensus         7 mrIiliG~PGSGKtT~   22 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTV   22 (189)
T ss_dssp             CEEEEECCTTSSHHHH
T ss_pred             eeEEEECCCCCCHHHH
Confidence            3577889999999974

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.98  E-value=0.012  Score=46.69  Aligned_cols=19  Identities=11%  Similarity=-0.060  Sum_probs=15.5

Q ss_pred             CCCCcccccCCCCCCCeee
Q psy13773        243 SGGPNSAPANESGTGGILL  261 (299)
Q Consensus       243 ~k~s~~l~~g~~gtg~~ll  261 (299)
                      +|-.-|++.||||+||+++
T Consensus         6 ~~~~iI~l~G~pGSGKsT~   24 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQ   24 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHH
T ss_pred             cCCcEEEEECCCCCCHHHH
Confidence            4556789999999999963

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=89.73  E-value=0.081  Score=39.00  Aligned_cols=32  Identities=16%  Similarity=0.145  Sum_probs=23.5

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      -+..+|.+|.|+|||+++-.++...+...+.+
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~~~~~~~~vli~   39 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVL   39 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHHHHTTTCCEEEE
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHcCCcEEEE
Confidence            35688999999999998876666555544433

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=89.68  E-value=0.046  Score=44.41  Aligned_cols=18  Identities=17%  Similarity=-0.112  Sum_probs=11.1

Q ss_pred             CCCcccccCCCCCCCeee
Q psy13773        244 GGPNSAPANESGTGGILL  261 (299)
Q Consensus       244 k~s~~l~~g~~gtg~~ll  261 (299)
                      +-.-|+|.||+|.|||+.
T Consensus        11 ~p~vi~lvGptGvGKTTT   28 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATT   28 (211)
T ss_dssp             SSEEEEEECSCCC----H
T ss_pred             CCEEEEEECCCCCCHHHH
Confidence            445678899999999986

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=89.59  E-value=0.086  Score=46.64  Aligned_cols=23  Identities=35%  Similarity=0.634  Sum_probs=19.6

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHH
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      .+.++++|++|+|||++++.+..
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHH
Confidence            35799999999999999887665

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.34  E-value=0.027  Score=46.83  Aligned_cols=17  Identities=24%  Similarity=0.202  Sum_probs=14.2

Q ss_pred             CCcccccCCCCCCCeee
Q psy13773        245 GPNSAPANESGTGGILL  261 (299)
Q Consensus       245 ~s~~l~~g~~gtg~~ll  261 (299)
                      .+-||++||||||||++
T Consensus        23 ~~pvlI~Ge~GtGK~~~   39 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVV   39 (247)
T ss_dssp             CSCEEEECSTTSSHHHH
T ss_pred             CCCEEEECCCCcCHHHH
Confidence            34589999999999864

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=89.28  E-value=0.083  Score=45.06  Aligned_cols=20  Identities=25%  Similarity=0.346  Sum_probs=18.9

Q ss_pred             EEEEcCCCChHHHHHHHHHH
Q psy13773         24 VLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        24 vLL~Gp~GsGKTtLlr~La~   43 (299)
                      |+|+|.|.+|||||+++|.+
T Consensus         3 v~lvG~pn~GKStlfn~lt~   22 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATL   22 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC
T ss_pred             EeEECCCCCCHHHHHHHHHC
Confidence            78999999999999999976

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=89.27  E-value=0.13  Score=43.48  Aligned_cols=25  Identities=24%  Similarity=0.332  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      .+--+.|+|.|.+|||||+++|.+.
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCC
Confidence            4456999999999999999999864

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=89.25  E-value=0.11  Score=45.12  Aligned_cols=26  Identities=19%  Similarity=0.328  Sum_probs=22.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      ..|.|-|+=|+||||+++.|+..+..
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~l~~   32 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASAASG   32 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             EEEEEECCccCCHHHHHHHHHHHhcc
Confidence            35778899999999999999998864

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.20  E-value=0.028  Score=43.25  Aligned_cols=16  Identities=19%  Similarity=0.391  Sum_probs=13.3

Q ss_pred             CcccccCCCCCCCeee
Q psy13773        246 PNSAPANESGTGGILL  261 (299)
Q Consensus       246 s~~l~~g~~gtg~~ll  261 (299)
                      +-|.|-|+||+|||++
T Consensus         2 p~IvliG~~G~GKSTi   17 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTI   17 (165)
T ss_dssp             CSEEEECSTTSSHHHH
T ss_pred             CcEEEECCCCCCHHHH
Confidence            4577789999999975

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=89.10  E-value=0.12  Score=43.48  Aligned_cols=25  Identities=36%  Similarity=0.512  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      +.|.|.|..|+|||||+.+|....+
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g   27 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTG   27 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcC
Confidence            4689999999999999999975443

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.07  E-value=0.1  Score=44.08  Aligned_cols=28  Identities=18%  Similarity=0.081  Sum_probs=23.4

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      ..-+.|.|+|..|+|||||+.+|....+
T Consensus         4 ~~iRni~i~gh~~~GKTtL~e~ll~~~g   31 (276)
T d2bv3a2           4 KRLRNIGIAAHIDAGKTTTTERILYYTG   31 (276)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             hhceEEEEEeCCCCCHHHHHHHHHHhcC
Confidence            4446799999999999999999976544

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=88.91  E-value=0.028  Score=43.28  Aligned_cols=14  Identities=21%  Similarity=0.081  Sum_probs=12.2

Q ss_pred             ccccCCCCCCCeee
Q psy13773        248 SAPANESGTGGILL  261 (299)
Q Consensus       248 ~l~~g~~gtg~~ll  261 (299)
                      |.|-||||+|||++
T Consensus         3 I~liG~~GsGKsTi   16 (161)
T d1viaa_           3 IVFIGFMGSGKSTL   16 (161)
T ss_dssp             EEEECCTTSCHHHH
T ss_pred             EEEECCCCCCHHHH
Confidence            77789999999974

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.48  E-value=0.05  Score=42.42  Aligned_cols=19  Identities=11%  Similarity=0.118  Sum_probs=15.9

Q ss_pred             CCCcccccCCCCCCCeeee
Q psy13773        244 GGPNSAPANESGTGGILLM  262 (299)
Q Consensus       244 k~s~~l~~g~~gtg~~ll~  262 (299)
                      +-.-|++.|+||+|||++.
T Consensus        13 ~p~liil~G~pGsGKST~a   31 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFI   31 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHH
Confidence            4457999999999999863

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=88.45  E-value=0.033  Score=49.10  Aligned_cols=17  Identities=24%  Similarity=0.358  Sum_probs=15.1

Q ss_pred             CCcccccCCCCCCCeee
Q psy13773        245 GPNSAPANESGTGGILL  261 (299)
Q Consensus       245 ~s~~l~~g~~gtg~~ll  261 (299)
                      .+++||.||.|+|||.|
T Consensus        68 ~~niLfiGPTGvGKTEl   84 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLM   84 (364)
T ss_dssp             CCCEEEECCTTSSHHHH
T ss_pred             CcceeeeCCCCccHHHH
Confidence            45699999999999987

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=87.96  E-value=0.12  Score=44.21  Aligned_cols=20  Identities=35%  Similarity=0.647  Sum_probs=17.2

Q ss_pred             CCCcEEEEEcCCCChHHHHH
Q psy13773         19 QPSRGVLFYGPPGCGKTLLA   38 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLl   38 (299)
                      ..+...+++|.+|+|||||-
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            35678899999999999976

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=87.81  E-value=0.15  Score=40.67  Aligned_cols=25  Identities=28%  Similarity=0.202  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANECQ   46 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l~   46 (299)
                      -.|++.|..++|||||+.+|....+
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~g   28 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVAA   28 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHhh
Confidence            4689999999999999999976544

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=87.56  E-value=0.051  Score=43.97  Aligned_cols=20  Identities=10%  Similarity=-0.095  Sum_probs=16.1

Q ss_pred             CCCCCcccccCCCCCCCeee
Q psy13773        242 QSGGPNSAPANESGTGGILL  261 (299)
Q Consensus       242 ~~k~s~~l~~g~~gtg~~ll  261 (299)
                      .++++-|+|.||+|.|||+.
T Consensus         7 ~~~~~vi~lvGp~GvGKTTT   26 (207)
T d1ls1a2           7 LKDRNLWFLVGLQGSGKTTT   26 (207)
T ss_dssp             CCSSEEEEEECCTTTTHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHH
Confidence            34566689999999999974

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.42  E-value=0.2  Score=36.78  Aligned_cols=27  Identities=7%  Similarity=0.096  Sum_probs=23.2

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      +.+-.|.|.|-+|+||+|++++|...+
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            356678899999999999999998755

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=87.40  E-value=0.054  Score=45.58  Aligned_cols=22  Identities=9%  Similarity=-0.121  Sum_probs=19.0

Q ss_pred             CCCCCCcccccCCCCCCCeeee
Q psy13773        241 SQSGGPNSAPANESGTGGILLM  262 (299)
Q Consensus       241 ~~~k~s~~l~~g~~gtg~~ll~  262 (299)
                      +..|+--+.+||||+|||+++.
T Consensus       100 ~~~k~n~~~l~G~~~tGKS~f~  121 (267)
T d1u0ja_         100 KFGKRNTIWLFGPATTGKTNIA  121 (267)
T ss_dssp             CSTTCCEEEEECSTTSSHHHHH
T ss_pred             CCCccEEEEEEcCCCCCHHHHH
Confidence            3478999999999999999864

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=87.39  E-value=0.041  Score=45.82  Aligned_cols=33  Identities=15%  Similarity=0.079  Sum_probs=24.5

Q ss_pred             CCCCCCCCC--CCCCCCCcccccCCCCCCCeeeec
Q psy13773        231 NFRFPSNPN--QSQSGGPNSAPANESGTGGILLMF  263 (299)
Q Consensus       231 Plk~Pe~~~--~~~~k~s~~l~~g~~gtg~~ll~~  263 (299)
                      |+=+|.|=.  .|+++..=++++|+||+|||.++.
T Consensus        19 ~TG~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~   53 (277)
T d1cr2a_          19 FSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVR   53 (277)
T ss_dssp             CCSCTTHHHHHCSBCTTCEEEEECSTTSSHHHHHH
T ss_pred             CCCchhHHHHhcCCCCCeEEEEEeCCCCCHHHHHH
Confidence            555565221  478888889999999999998653

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.13  E-value=0.15  Score=43.81  Aligned_cols=20  Identities=35%  Similarity=0.649  Sum_probs=17.4

Q ss_pred             CCCcEEEEEcCCCChHHHHH
Q psy13773         19 QPSRGVLFYGPPGCGKTLLA   38 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLl   38 (299)
                      +.+...+++|.||+|||||.
T Consensus        12 ~~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          12 KQGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TTCCEEEEECCTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            35677899999999999987

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.11  E-value=0.039  Score=46.58  Aligned_cols=24  Identities=8%  Similarity=0.041  Sum_probs=21.6

Q ss_pred             CCCCCCCcccccCCCCCCCeeeec
Q psy13773        240 QSQSGGPNSAPANESGTGGILLMF  263 (299)
Q Consensus       240 ~~~~k~s~~l~~g~~gtg~~ll~~  263 (299)
                      -|+....-..+|||||||||.|+.
T Consensus        55 gG~~~g~i~e~~G~~~~GKT~l~l   78 (269)
T d1mo6a1          55 GGLPRGRVIEIYGPESSGKTTVAL   78 (269)
T ss_dssp             SSBCSSSEEEEECSSSSSHHHHHH
T ss_pred             CCcccceeEEEecCCCcHHHHHHH
Confidence            588999999999999999998854

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=87.03  E-value=0.17  Score=42.27  Aligned_cols=22  Identities=27%  Similarity=0.392  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      .+.|+|-|.+|||||.++|.+.
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999963

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=86.89  E-value=0.12  Score=44.77  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=18.6

Q ss_pred             EEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         24 VLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        24 vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      |.|-|+=|+||||+++.|+..+..
T Consensus         7 I~IEG~iGsGKTTl~~~La~~l~~   30 (329)
T d1e2ka_           7 VYIDGPHGMGKTTTTQLLVALGSR   30 (329)
T ss_dssp             EEECSCTTSSHHHHHHHHTC----
T ss_pred             EEEECCcCCCHHHHHHHHHHHhCC
Confidence            667799999999999999987754

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=86.87  E-value=0.027  Score=47.58  Aligned_cols=25  Identities=12%  Similarity=0.070  Sum_probs=21.7

Q ss_pred             CCCCCCCcccccCCCCCCCeeeecc
Q psy13773        240 QSQSGGPNSAPANESGTGGILLMFP  264 (299)
Q Consensus       240 ~~~~k~s~~l~~g~~gtg~~ll~~~  264 (299)
                      -|+...+-..+|||||||||.|++-
T Consensus        52 GGip~g~itei~G~~~sGKT~l~l~   76 (268)
T d1xp8a1          52 GGIPRGRITEIYGPESGGKTTLALA   76 (268)
T ss_dssp             SSEETTSEEEEEESTTSSHHHHHHH
T ss_pred             CCccCceEEEEecCCccchHHHHHH
Confidence            4777888999999999999998754

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=86.84  E-value=0.031  Score=46.41  Aligned_cols=21  Identities=24%  Similarity=0.389  Sum_probs=17.2

Q ss_pred             CCCCcccccCCCCCCCeeeec
Q psy13773        243 SGGPNSAPANESGTGGILLMF  263 (299)
Q Consensus       243 ~k~s~~l~~g~~gtg~~ll~~  263 (299)
                      -..+-.++||+||+|||.|+.
T Consensus        27 ~pg~~~~i~G~~G~GKS~l~l   47 (274)
T d1nlfa_          27 VAGTVGALVSPGGAGKSMLAL   47 (274)
T ss_dssp             ETTSEEEEEESTTSSHHHHHH
T ss_pred             cCCcEEEEEeCCCCCHHHHHH
Confidence            346678899999999998763

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=86.83  E-value=0.14  Score=44.35  Aligned_cols=25  Identities=24%  Similarity=0.316  Sum_probs=22.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773         23 GVLFYGPPGCGKTLLAKAIANECQA   47 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~~l~~   47 (299)
                      .|.|-|+=|+||||+++.|+..+..
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~   31 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAI   31 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhh
Confidence            3678899999999999999998764

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.15  E-value=0.048  Score=43.68  Aligned_cols=19  Identities=11%  Similarity=-0.183  Sum_probs=16.3

Q ss_pred             CCCcccccCCCCCCCeeee
Q psy13773        244 GGPNSAPANESGTGGILLM  262 (299)
Q Consensus       244 k~s~~l~~g~~gtg~~ll~  262 (299)
                      .-+.+|||||||||||.+-
T Consensus        14 ~~~~~l~~G~~g~gk~~~a   32 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVS   32 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHH
Confidence            4568999999999999874

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=85.95  E-value=0.037  Score=46.96  Aligned_cols=15  Identities=13%  Similarity=0.198  Sum_probs=13.1

Q ss_pred             ccccCCCCCCCeeee
Q psy13773        248 SAPANESGTGGILLM  262 (299)
Q Consensus       248 ~l~~g~~gtg~~ll~  262 (299)
                      +|.-||||||||..+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            788899999999754

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=85.80  E-value=0.29  Score=40.46  Aligned_cols=27  Identities=30%  Similarity=0.311  Sum_probs=23.4

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      ..++.+++.|.=|+||||++-.+|..+
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~l   32 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIRL   32 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHHH
Confidence            467889999999999999888888755

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.38  E-value=0.23  Score=41.93  Aligned_cols=28  Identities=21%  Similarity=0.186  Sum_probs=23.6

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      .+-.|..++|+|++|+|||+++..++..
T Consensus        64 pig~GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          64 PIGRGQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             CCBTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCCEEEeecCCCCChHHHHHHHHHh
Confidence            4567889999999999999998877653

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=85.17  E-value=0.078  Score=42.85  Aligned_cols=18  Identities=17%  Similarity=0.128  Sum_probs=15.1

Q ss_pred             CCCcccccCCCCCCCeee
Q psy13773        244 GGPNSAPANESGTGGILL  261 (299)
Q Consensus       244 k~s~~l~~g~~gtg~~ll  261 (299)
                      +..-|+|.||+|.|||+.
T Consensus         5 ~~~vi~lvGptGvGKTTT   22 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTT   22 (207)
T ss_dssp             SSSEEEEECSTTSSHHHH
T ss_pred             CCEEEEEECCCCCCHHHH
Confidence            445679999999999985

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=84.92  E-value=0.27  Score=40.94  Aligned_cols=25  Identities=28%  Similarity=0.452  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      .+-.++++|-|.+|||||+++|.+.
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CceEEEEEecCccchhhhhhhhhcc
Confidence            4456899999999999999999874

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=84.85  E-value=0.053  Score=46.92  Aligned_cols=18  Identities=22%  Similarity=0.409  Sum_probs=16.0

Q ss_pred             CCcccccCCCCCCCeeee
Q psy13773        245 GPNSAPANESGTGGILLM  262 (299)
Q Consensus       245 ~s~~l~~g~~gtg~~ll~  262 (299)
                      +-+||..||+|+|||.+|
T Consensus       166 ~~nili~G~tgSGKTT~l  183 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYI  183 (323)
T ss_dssp             TCCEEEEESTTSSHHHHH
T ss_pred             CCCEEEEeeccccchHHH
Confidence            457999999999999986

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=83.93  E-value=0.26  Score=41.43  Aligned_cols=29  Identities=21%  Similarity=0.164  Sum_probs=23.5

Q ss_pred             CCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         17 GMQPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      .+-++..++|+|++|+|||+|+..++...
T Consensus        63 pig~GQr~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          63 PVGRGQRELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             CCBTTCBCBEEESSSSSHHHHHHHHHHTC
T ss_pred             cccCCceEeeccCCCCChHHHHHHHHhhh
Confidence            34578889999999999999998765543

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.66  E-value=0.23  Score=41.76  Aligned_cols=26  Identities=27%  Similarity=0.280  Sum_probs=22.0

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         20 PSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        20 ~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      +-..|.++||.++|||+|++.|++..
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCC
Confidence            34577899999999999999999743

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=83.00  E-value=0.41  Score=39.17  Aligned_cols=33  Identities=24%  Similarity=0.395  Sum_probs=25.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHHhh---cCCeecccc
Q psy13773         22 RGVLFYGPPGCGKTLLAKAIANEC---QANFISVKG   54 (299)
Q Consensus        22 ~~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~~   54 (299)
                      +.|+++|.=|+||||++-.||..+   |..+..||+
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~   37 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGC   37 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEec
Confidence            467889999999999998888755   445556664

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.67  E-value=0.16  Score=39.98  Aligned_cols=20  Identities=40%  Similarity=0.581  Sum_probs=16.9

Q ss_pred             CCCcEEEEEcCCCChHHHHH
Q psy13773         19 QPSRGVLFYGPPGCGKTLLA   38 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLl   38 (299)
                      ..++.+++..|.|+|||+.+
T Consensus        38 ~~~~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          38 FSGKNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             TTCSCEEEECSSHHHHHHHH
T ss_pred             HcCCCEEEEcCCCCchhHHH
Confidence            34678999999999999875

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=82.34  E-value=0.11  Score=42.13  Aligned_cols=19  Identities=11%  Similarity=-0.025  Sum_probs=15.3

Q ss_pred             CCCcccccCCCCCCCeeee
Q psy13773        244 GGPNSAPANESGTGGILLM  262 (299)
Q Consensus       244 k~s~~l~~g~~gtg~~ll~  262 (299)
                      +..-|+|.||+|.|||+..
T Consensus         8 ~p~vi~lvGptGvGKTTTi   26 (211)
T d2qy9a2           8 APFVILMVGVNGVGKTTTI   26 (211)
T ss_dssp             TTEEEEEECCTTSCHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHH
Confidence            3456889999999999753

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=82.16  E-value=0.13  Score=42.83  Aligned_cols=22  Identities=9%  Similarity=-0.050  Sum_probs=17.7

Q ss_pred             CCCCCcccccCCCCCCCeeeec
Q psy13773        242 QSGGPNSAPANESGTGGILLMF  263 (299)
Q Consensus       242 ~~k~s~~l~~g~~gtg~~ll~~  263 (299)
                      ++|+-.+++-+|+|+|||+.+.
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l   27 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYL   27 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHH
T ss_pred             hhcCCcEEEEECCCCCHHHHHH
Confidence            4566778999999999998543

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.10  E-value=0.31  Score=40.71  Aligned_cols=26  Identities=12%  Similarity=0.258  Sum_probs=21.9

Q ss_pred             CCCCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773         18 MQPSRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        18 i~~~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      +..| -++++|.-.+|||||+++|.+.
T Consensus        24 ~~~P-~ivvvG~~SsGKSsliNaLlg~   49 (299)
T d2akab1          24 LDLP-QIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             CCCC-EEEEEEBTTSCHHHHHHHHHTS
T ss_pred             CCCC-eEEEEcCCCCCHHHHHHHHhCC
Confidence            4444 4778999999999999999984

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=82.02  E-value=0.095  Score=42.14  Aligned_cols=18  Identities=22%  Similarity=0.093  Sum_probs=15.0

Q ss_pred             CCCcccccCCCCCCCeee
Q psy13773        244 GGPNSAPANESGTGGILL  261 (299)
Q Consensus       244 k~s~~l~~g~~gtg~~ll  261 (299)
                      |.--|+|.|.||+|||.|
T Consensus        23 kg~vIwltGlsGsGKTTi   40 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTL   40 (208)
T ss_dssp             SCEEEEEECSTTSSHHHH
T ss_pred             CCeEEEEECCCCCCHHHH
Confidence            444699999999999965

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.00  E-value=0.085  Score=40.26  Aligned_cols=15  Identities=20%  Similarity=0.104  Sum_probs=13.0

Q ss_pred             ccccCCCCCCCeeee
Q psy13773        248 SAPANESGTGGILLM  262 (299)
Q Consensus       248 ~l~~g~~gtg~~ll~  262 (299)
                      +.+.|++|+|||+|.
T Consensus         4 i~I~G~~gSGKTTli   18 (165)
T d1xjca_           4 WQVVGYKHSGKTTLM   18 (165)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEEeCCCCCHHHHH
Confidence            457899999999986

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=81.99  E-value=0.33  Score=40.75  Aligned_cols=27  Identities=15%  Similarity=0.303  Sum_probs=22.2

Q ss_pred             CCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         18 MQPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      +..| .++++|...+|||||+++|.+.-
T Consensus        22 ~~lP-~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          22 LDLP-QIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             TCCC-EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             CCCC-eEEEEeCCCCCHHHHHHHHhCCC
Confidence            4444 47889999999999999999843

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=81.90  E-value=0.44  Score=45.09  Aligned_cols=27  Identities=33%  Similarity=0.400  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      ....+|++.|.+|+|||.-.|.|...+
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            457899999999999999999888755

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=81.85  E-value=0.094  Score=39.01  Aligned_cols=15  Identities=7%  Similarity=0.071  Sum_probs=13.4

Q ss_pred             ccccCCCCCCCeeee
Q psy13773        248 SAPANESGTGGILLM  262 (299)
Q Consensus       248 ~l~~g~~gtg~~ll~  262 (299)
                      |++.|+||+|||.|.
T Consensus         3 ivlvG~~~vGKSsLi   17 (160)
T d1r8sa_           3 ILMVGLDAAGKTTIL   17 (160)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            678999999999886

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=81.84  E-value=0.42  Score=37.28  Aligned_cols=21  Identities=33%  Similarity=0.431  Sum_probs=19.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q psy13773         23 GVLFYGPPGCGKTLLAKAIAN   43 (299)
Q Consensus        23 ~vLL~Gp~GsGKTtLlr~La~   43 (299)
                      .|++.|...+|||||+++|.+
T Consensus         7 nIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEEeccCCcHHHHHHHHHh
Confidence            579999999999999999976

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=81.52  E-value=0.5  Score=37.22  Aligned_cols=26  Identities=35%  Similarity=0.391  Sum_probs=21.8

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANE   44 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~   44 (299)
                      +|.-.|+++|.-.+|||||+.+|.+.
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~   31 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGI   31 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSC
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhh
Confidence            34457999999999999999999763

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=81.32  E-value=0.48  Score=45.07  Aligned_cols=27  Identities=26%  Similarity=0.388  Sum_probs=23.1

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      ....+|++.|.+|+|||...|.|...+
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            457899999999999999888887754

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

Probab=81.21  E-value=0.4  Score=41.48  Aligned_cols=45  Identities=13%  Similarity=0.133  Sum_probs=30.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeeeccC
Q psy13773        205 RSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLMFPS  265 (299)
Q Consensus       205 PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~~~~  265 (299)
                      +.++.+||  ++.+-+.+.+.+--              ..-.-|+-||+.|+|||-.||-.
T Consensus        56 ~~~~q~~v--y~~~~~plv~~~l~--------------G~n~ti~aYG~tgSGKT~Tm~G~  100 (354)
T d1goja_          56 MSCKQSDI--FDFSIKPTVDDILN--------------GYNGTVFAYGQTGAGKSYTMMGT  100 (354)
T ss_dssp             TTCCHHHH--HHHHTHHHHHHHTT--------------TCCEEEEEECSTTSSHHHHHTBS
T ss_pred             CCCCHHHH--HHHHHHHHHHHhhc--------------cCceeEEecccCCCCcceeeecc
Confidence            55777776  44444444444322              23466999999999999999864

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=81.17  E-value=0.093  Score=39.77  Aligned_cols=17  Identities=6%  Similarity=-0.046  Sum_probs=14.9

Q ss_pred             ccccCCCCCCCeeeecc
Q psy13773        248 SAPANESGTGGILLMFP  264 (299)
Q Consensus       248 ~l~~g~~gtg~~ll~~~  264 (299)
                      |++-|+||+|||.|+.-
T Consensus         5 i~ivG~~~~GKTsLi~~   21 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKK   21 (165)
T ss_dssp             EEEECSTTSSHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHH
Confidence            78999999999998754

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=80.89  E-value=0.5  Score=44.89  Aligned_cols=27  Identities=26%  Similarity=0.373  Sum_probs=23.0

Q ss_pred             CCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773         19 QPSRGVLFYGPPGCGKTLLAKAIANEC   45 (299)
Q Consensus        19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l   45 (299)
                      ....+|++.|.+|+|||+-.|.|...+
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            457899999999999999888877754

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.35  E-value=0.73  Score=36.30  Aligned_cols=32  Identities=31%  Similarity=0.307  Sum_probs=23.9

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773         21 SRGVLFYGPPGCGKTLLAKAIANECQANFISV   52 (299)
Q Consensus        21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i   52 (299)
                      ....+|..|.|+|||.++-.++..++...+.+
T Consensus        85 ~~~~ll~~~tG~GKT~~a~~~~~~~~~~~Liv  116 (206)
T d2fz4a1          85 DKRGCIVLPTGSGKTHVAMAAINELSTPTLIV  116 (206)
T ss_dssp             TSEEEEEESSSTTHHHHHHHHHHHSCSCEEEE
T ss_pred             CCCcEEEeCCCCCceehHHhHHHHhcCceeEE
Confidence            34567889999999999888887776554433

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.19  E-value=0.099  Score=40.42  Aligned_cols=18  Identities=22%  Similarity=0.086  Sum_probs=14.9

Q ss_pred             CCCcccccCCCCCCCeee
Q psy13773        244 GGPNSAPANESGTGGILL  261 (299)
Q Consensus       244 k~s~~l~~g~~gtg~~ll  261 (299)
                      ++--|.+.||+|+|||+|
T Consensus        21 ~~~iIgI~G~~GSGKSTl   38 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTL   38 (198)
T ss_dssp             SSEEEEEEECTTSSHHHH
T ss_pred             CCEEEEEECCCCCCHHHH
Confidence            444688999999999975

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=80.08  E-value=0.1  Score=44.84  Aligned_cols=18  Identities=28%  Similarity=0.097  Sum_probs=15.2

Q ss_pred             CcccccCCCCCCCeeeec
Q psy13773        246 PNSAPANESGTGGILLMF  263 (299)
Q Consensus       246 s~~l~~g~~gtg~~ll~~  263 (299)
                      .-.||+|..|||||+|-.
T Consensus        15 ~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          15 DVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             CEEEEEECTTSCHHHHTC
T ss_pred             CEEEEEccCCCCcccccc
Confidence            346999999999999764