Psyllid ID: psy13778

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
Protein Sequence
MSSDQCYYRVRCRYTRYPPPHPMWYAATAARRMSAWFLAARELWNQIYWTLLQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLLQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPRYKEKELVERSAYGETEDEEEESDTEDIRDDDDDDMEIVVCTSQDSEDLPGPSHSKRMRGTRELLTMKLDSCLHFPRQRGSPWTVS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHEEccccccccccccc
Coil and Loop (DISEMBL)
mssdqcyyrvrcrytryppphpmwYAATAARRMSAWFLAARELWNQIYWTLlqgptllqgptlpqgptllqgptllqgptlpqgptlpqgptllqdptlpqgptllqgptlpqgptlpqgptlpqgptlpqgptllqgptllqgptllqgptllqgptlpqgptllqgptllqgprkgptlpqgptlpqgptlpqdptllqdptllqgprykekelversaygetedeeeesdtedirddddddmeIVVCtsqdsedlpgpshskrmrgtRELLTMKLDsclhfprqrgspwtvs
Flexible Loop (DISEMBL)
mssdqcyyrvrcrytryppphPMWYAATAARRMSAWFLAARELWNQIYWTLLQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLLQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTllqgprykekelversaygetedeeeesdtedirdddddDMEIVVCtsqdsedlpgpshskrmrGTRELLTMKLdsclhfprqrgspwtvs
Low Complexity Region (SEG)
MSSDQCyyrvrcrytrypppHPMWYAATAARRMSAWFLAARELWNQIYWTLLQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLLQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPRYKEKELVERSAYGetedeeeesdtedirddddddmeIVVCTSQDSEDLPGPSHSKRMRGTRELLTMKLDSCLHFPRQRGSPWTVS
Disordered region (IsUnstruct)
*****CYYRVRCRYTRYPPPHPMWYAATAARRMSAWFLAARELWNQIYWTLLQGPTLLQGPT*****************************************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
M*SDQCYYRVRCRY**YPP***********************LWNQIYWTLLQGPTLLQ********************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MSSDQCYYRVRCRYTRYPPPHPMWYAATAARRMSAWFLAARELWNQIYWTLLQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLLQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPRYKEKELVE********************DDDDDDMEIVVCTSQ************RMRGTRELLTMKLDSCLHFP**********
Disordered Region (DISPRO)
********************************************************************************************************************************************************************************************************************************************************************************LLTMKL*SCLHFPRQR*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSDQCYYRVRCRYTRYPPPHPMWYAATAARRMSAWFLAARELWNQIYWTLLQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLLQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPRYKEKELVERSAYGETEDEEEESDTEDIRDDDDDDMEIVVCTSQDSEDLPGPSHSKRMRGTRELLTMKLDSCLHFPRQRGSPWTVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	295	2.2.26 [Sep-21-2011]
P06914	367	Circumsporozoite protein	N/A	N/A	0.288	0.231	0.524	1e-16
P27951	1164	IgA FC receptor OS=Strept	yes	N/A	0.406	0.103	0.307	4e-13

>sp|P06914|CSP_PLAYO Circumsporozoite protein OS=Plasmodium yoelii yoelii PE=1 SV=1

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/101 (52%), Positives = 58/101 (57%)

Query: 45  NQIYWTLLQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPT 104
           N++   ++    + QGP  PQGP   QGP   QGP  PQGP  PQGP   Q P  PQGP 
Sbjct: 125 NKLNQPVVADENVDQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPG 184

Query: 105 LLQGPTLPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGP 145
             QGP  PQGP  PQGP  PQGP  PQGP   QGP   QGP
Sbjct: 185 APQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGP 225

The circumsporozoite protein is the immunodominant surface antigen on the sporozoite (the infective stage of the malaria parasite that is transmitted from the mosquito to the vertebrate host).
Plasmodium yoelii yoelii (taxid: 73239)

>sp|P27951|BAG_STRAG IgA FC receptor OS=Streptococcus agalactiae GN=bag PE=1 SV=1

 Score = 75.5 bits (184), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 7/127 (5%)

Query: 64  PQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQGPTLPQGPTL 123
           P+ P   + P L Q P  PQ P  P  P   + P  P+ P + + P  P+ P +P+ P  
Sbjct: 827 PETPDTPKIPELPQAPDTPQAPDTPHVP---ESPKAPEAPRVPESPKTPEAPHVPESPKA 883

Query: 124 PQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLLQGPRKGPTLPQ 183
           P+ P +P+ P   + P + + P   + P + + P  P  P L   P L   P+    LP 
Sbjct: 884 PEAPRVPESPKTPEAPHVPESPKTPEAPKIPEPPKTPDVPKLPDVPKLPDVPK----LPD 939

Query: 184 GPTLPQG 190
            P LP G
Sbjct: 940 APKLPDG 946

Streptococcus agalactiae (taxid: 1311)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
449272525	243	Repetin, partial [Columba livia]	0.576	0.699	0.372	4e-30
269838860	408	circumsporozoite protein [Plasmodium yoe	0.501	0.362	0.56	9e-29
63168791	427	circumsporozoite protein [Plasmodium yoe	0.501	0.346	0.56	6e-28
344248733	308	hypothetical protein I79_018504 [Cricetu	0.535	0.512	0.387	1e-26
195729183	1402	VtaA13 [Haemophilus parasuis str. Nagasa	0.562	0.118	0.463	8e-24
195728822	1492	VtaA18 [Haemophilus parasuis]	0.454	0.089	0.5	5e-23
195729105	1500	VtaA11 [Haemophilus parasuis str. Nagasa	0.532	0.104	0.471	9e-23
423626606	210	hypothetical protein IK3_05202, partial	0.559	0.785	0.401	9e-23
195729025	1481	VtaA30 [Haemophilus parasuis]	0.454	0.090	0.5	9e-23
195728983	1492	VtaA24 [Haemophilus parasuis]	0.454	0.089	0.493	1e-22

>gi|449272525|gb|EMC82409.1| Repetin, partial [Columba livia]

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 89/172 (51%), Gaps = 2/172 (1%)

Query: 50  TLLQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGP 109
            L  GP+ +QG  L  GP+ +QG  L  GP+  QG  L  GP+ +Q   L  GP+ +QG 
Sbjct: 9   VLHHGPSWVQGHVLHHGPSWVQGHVLHHGPSWVQGHVLHHGPSWVQGHVLHHGPSWVQGH 68

Query: 110 TLPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGP 169
            L  GP+  QG  L  GP+  QG  L  GP+ +QG  L  GP+ +QG  L  GP+ +QG 
Sbjct: 69  VLHHGPSWVQGHVLHHGPSWVQGHVLHHGPSWVQGHVLHHGPSWVQGHVLHHGPSWVQGH 128

Query: 170 TLLQGPR--KGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPRYKEKELVER 219
            L  GP   +G  L  GP+  QG  L   P+ +Q   L  GP + +  ++  
Sbjct: 129 VLHHGPSWVQGHVLHHGPSWVQGHVLHHGPSWVQGHVLHHGPSWVQGHVLHH 180

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|269838860|gb|ACZ48692.1| circumsporozoite protein [Plasmodium yoelii yoelii]

 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 84/150 (56%), Positives = 86/150 (57%), Gaps = 2/150 (1%)

Query: 50  TLLQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGP 109
            + QGP   QGP  PQGP   QGP   QGP  PQGP  PQGP   Q P  PQGP   QGP
Sbjct: 127 NVDQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGP 186

Query: 110 TLPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGP 169
             PQGP  PQGP  PQGP  PQGP   QGP   QGP   QGP   QGP  PQGP   QGP
Sbjct: 187 GAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGP 246

Query: 170 TLLQGPR--KGPTLPQGPTLPQGPTLPQDP 197
              QGP   +GP  PQGP  PQGP  PQ P
Sbjct: 247 GAPQGPGAPQGPGAPQGPGAPQGPGAPQGP 276

Source: Plasmodium yoelii yoelii

Species: Plasmodium yoelii

Genus: Plasmodium

Order: Haemosporida

Class: Aconoidasida

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|63168791|gb|AAY34563.1| circumsporozoite protein [Plasmodium yoelii]

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 84/150 (56%), Positives = 86/150 (57%), Gaps = 2/150 (1%)

Query: 50  TLLQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGP 109
            + QGP   QGP  PQGP   QGP   QGP  PQGP  PQGP   Q P  PQGP   QGP
Sbjct: 136 NVDQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGP 195

Query: 110 TLPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGP 169
             PQGP  PQGP  PQGP  PQGP   QGP   QGP   QGP   QGP  PQGP   QGP
Sbjct: 196 GAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGP 255

Query: 170 TLLQGPR--KGPTLPQGPTLPQGPTLPQDP 197
              QGP   +GP  PQGP  PQGP  PQ P
Sbjct: 256 GAPQGPGAPQGPGAPQGPGAPQGPGAPQGP 285

Source: Plasmodium yoelii

Species: Plasmodium yoelii

Genus: Plasmodium

Order: Haemosporida

Class: Aconoidasida

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|344248733|gb|EGW04837.1| hypothetical protein I79_018504 [Cricetulus griseus]

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 64/160 (40%), Gaps = 2/160 (1%)

Query: 54  GPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQ 113
              LLQ   L Q   LLQ   LLQ   L Q   L Q   LLQ   L Q   LLQ   L Q
Sbjct: 100 ACVLLQACVLLQACVLLQACVLLQACVLLQACVLLQACVLLQACVLLQACVLLQACVLLQ 159

Query: 114 GPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLLQ 173
              L Q   L Q   L Q   LLQ   LLQ   LLQ   LLQ   L Q   LLQ   LLQ
Sbjct: 160 ACVLLQACVLLQACVLLQACVLLQACVLLQACVLLQACVLLQACVLLQACVLLQACVLLQ 219

Query: 174 GPR--KGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPRY 211
                +   L Q   L Q   L Q   LLQ   LL    +
Sbjct: 220 ACVLLQACVLLQACVLLQACVLLQACVLLQACVLLCACLF 259

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|195729183|gb|ACG50752.1| VtaA13 [Haemophilus parasuis str. Nagasaki]

 Score =  117 bits (292), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 82/177 (46%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
           +GP    GP  P GP    GP   QG   P GP   +G      P  PQGPT   GPT P
Sbjct: 721 EGPKGETGPAGPAGPKGEPGPKGEQGLPGPAGPAGAKGDKGDTGPAGPQGPT---GPTGP 777

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
           QGPT P GP  P GPT PQGP     PT  QGP     PT  QGP  P GP   QGPT  
Sbjct: 778 QGPTGPTGPQGPTGPTGPQGPA---SPTGSQGPA---SPTGSQGPAGPTGPAGPQGPTGP 831

Query: 173 QGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPRYKEKELVERSAYGETEDEE 229
            GP  GPT PQGP  P GP  PQ P   Q P    GP   + E V  S  G  +D E
Sbjct: 832 TGP-AGPTGPQGPAGPAGPQGPQGPAGPQGPAGPMGPAGPKGENVG-SGLGLKDDAE 886

Source: Haemophilus parasuis str. Nagasaki

Species: Haemophilus parasuis

Genus: Haemophilus

Family: Pasteurellaceae

Order: Pasteurellales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|195728822|gb|ACG50732.1| VtaA18 [Haemophilus parasuis]

 Score =  114 bits (285), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 72/144 (50%), Positives = 77/144 (53%), Gaps = 10/144 (6%)

Query: 54  GPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQ 113
           GP   +GP  P+G T  +G    +G T P GPT P+G      P  PQGPT   GPT PQ
Sbjct: 826 GPAGPRGPAGPKGDTGPKGDAGQKGETGPAGPTGPKGDKGDTGPAGPQGPT---GPTGPQ 882

Query: 114 GPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLLQ 173
           GPT P GP  P GPT PQGP     PT  QGP     PT  QGP  P GP   QGPT   
Sbjct: 883 GPTGPTGPQGPTGPTGPQGPA---SPTGSQGPA---SPTGSQGPAGPTGPAGPQGPTGPT 936

Query: 174 GPRKGPTLPQGPTLPQGPTLPQDP 197
           GP  GPT PQGP  P GP  P  P
Sbjct: 937 GP-AGPTGPQGPAGPAGPQGPAGP 959

Source: Haemophilus parasuis

Species: Haemophilus parasuis

Genus: Haemophilus

Family: Pasteurellaceae

Order: Pasteurellales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|195729105|gb|ACG50749.1| VtaA11 [Haemophilus parasuis str. Nagasaki]

 Score =  113 bits (283), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 82/174 (47%), Positives = 87/174 (50%), Gaps = 17/174 (9%)

Query: 59  QGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQD---PTLPQGPTLLQGPTLPQGP 115
           +G T P+G T   GP    G T   GP  P+G    QD   P  PQGPT   GPT PQGP
Sbjct: 818 KGDTGPKGDT---GPKGEAGSTGSMGPVDPKGEKGDQDSMGPAEPQGPT---GPTGPQGP 871

Query: 116 TLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLLQGP 175
           T P GP  P GPT PQGP     PT  QGP     PT  QGP  P GP   QGPT   GP
Sbjct: 872 TGPTGPQGPTGPTGPQGPA---SPTGSQGPA---SPTGSQGPAGPTGPAGPQGPTGPTGP 925

Query: 176 RKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPRYKEKELVERSAYGETEDEE 229
             GPT PQGP  P GP  PQ P   Q P    GP   + E V  S  G  +D E
Sbjct: 926 -AGPTGPQGPAGPAGPQGPQGPAGPQGPAGPTGPAGPKGENVG-SGLGLKDDAE 977

Source: Haemophilus parasuis str. Nagasaki

Species: Haemophilus parasuis

Genus: Haemophilus

Family: Pasteurellaceae

Order: Pasteurellales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|423626606|ref|ZP_17602382.1| hypothetical protein IK3_05202, partial [Bacillus cereus VD148] gi|401251898|gb|EJR58167.1| hypothetical protein IK3_05202, partial [Bacillus cereus VD148]

 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 95/167 (56%), Gaps = 2/167 (1%)

Query: 50  TLLQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGP 109
           T  + PT  + PT P+ PT  + PT  + PT P+ PT P+ PT  + PT P+ PT  + P
Sbjct: 31  TEPEKPTEPEKPTDPEKPTDPEKPTEPEKPTEPEKPTEPEKPTEPEKPTDPEKPTDPEKP 90

Query: 110 TLPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGP 169
           T P+ PT P+ PT P+ PT P+ PT  + PT  + PT  + PT  + PT P+ PT  + P
Sbjct: 91  TEPEKPTEPEKPTEPEKPTEPEKPTEPEKPTEPEKPTEPEKPTEPEKPTEPEKPTEPEKP 150

Query: 170 TLLQGPRK--GPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPRYKEK 214
           T  + P +   PT P+ PT P+ PT P+ PT  + PT  + P  +EK
Sbjct: 151 TEPEKPTEPEKPTEPEKPTEPEKPTEPEKPTEPEKPTEPEKPTNQEK 197

Source: Bacillus cereus VD148

Species: Bacillus cereus

Genus: Bacillus

Family: Bacillaceae

Order: Bacillales

Class: Bacilli

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|195729025|gb|ACG50746.1| VtaA30 [Haemophilus parasuis]

 Score =  113 bits (283), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 72/144 (50%), Positives = 77/144 (53%), Gaps = 10/144 (6%)

Query: 54  GPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQ 113
           GP   +GP  P+G T  +G    +G T P GPT P+G      P  PQGPT   GPT PQ
Sbjct: 830 GPAGPRGPAGPKGDTGPKGDAGQKGETGPAGPTGPKGDKGDTGPAGPQGPT---GPTGPQ 886

Query: 114 GPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLLQ 173
           GPT P GP  P GPT PQGP     PT  QGP     PT  QGP  P GP   QGPT   
Sbjct: 887 GPTGPTGPQGPTGPTGPQGPA---SPTGSQGPA---SPTGSQGPAGPTGPAGPQGPTGPT 940

Query: 174 GPRKGPTLPQGPTLPQGPTLPQDP 197
           GP  GPT PQGP  P GP  P  P
Sbjct: 941 GP-AGPTGPQGPAGPAGPQGPAGP 963

Source: Haemophilus parasuis

Species: Haemophilus parasuis

Genus: Haemophilus

Family: Pasteurellaceae

Order: Pasteurellales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|195728983|gb|ACG50743.1| VtaA24 [Haemophilus parasuis]

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 71/144 (49%), Positives = 76/144 (52%), Gaps = 10/144 (6%)

Query: 54  GPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQ 113
           GP   +GP  P+G T  +G    +G T P GPT P+G      P  PQGP    GPT PQ
Sbjct: 826 GPAGPRGPAGPKGDTGPKGDAGQKGETGPAGPTGPKGDKGDTGPAGPQGPA---GPTGPQ 882

Query: 114 GPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLLQ 173
           GPT P GP  P GPT PQGP     PT  QGP     PT  QGP  P GP   QGPT   
Sbjct: 883 GPTGPTGPQGPTGPTGPQGPA---SPTGSQGPA---SPTGSQGPAGPTGPAGPQGPTGPT 936

Query: 174 GPRKGPTLPQGPTLPQGPTLPQDP 197
           GP  GPT PQGP  P GP  P  P
Sbjct: 937 GP-AGPTGPQGPAGPAGPQGPAGP 959

Source: Haemophilus parasuis

Species: Haemophilus parasuis

Genus: Haemophilus

Family: Pasteurellaceae

Order: Pasteurellales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
UNIPROTKB|Q81JD7	382	bclA "Uncharacterized protein"	0.505	0.390	0.54	4.4e-29
TIGR_CMR|BA_1222	382	BA_1222 "conserved hypothetica	0.505	0.390	0.54	4.4e-29
UNIPROTKB|Q81WX2	478	BA_3841 "Uncharacterized prote	0.508	0.313	0.422	7.1e-18
TIGR_CMR|BA_3841	478	BA_3841 "conserved hypothetica	0.508	0.313	0.422	7.1e-18
UNIPROTKB|F1LT09	1327	Wdr33 "Protein Wdr33" [Rattus	0.494	0.110	0.430	7.4e-18
UNIPROTKB|J9P7B0	2514	ZDBF2 "Uncharacterized protein	0.376	0.044	0.368	2.1e-17
RGD|628797	295	Prpmp5 "proline-rich protein M	0.518	0.518	0.413	3.2e-17
MGI|MGI:1921570	1330	Wdr33 "WD repeat domain 33" [M	0.494	0.109	0.440	3.3e-17
UNIPROTKB|I3LTD5	1471	WDR33 "Uncharacterized protein	0.494	0.099	0.435	1.3e-16
UNIPROTKB|Q9C0J8	1336	WDR33 "pre-mRNA 3' end process	0.494	0.109	0.429	1.4e-16

UNIPROTKB|Q81JD7 bclA "Uncharacterized protein" [Bacillus anthracis (taxid:1392)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 81/150 (54%), Positives = 82/150 (54%)

Query:    49 WTLLQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQG 108
             +TL  GPT   GPT P GPT   GPT   GPT P G T   GPT    PT P GPT   G
Sbjct:    36 FTLPTGPTGPTGPTGPTGPTGPTGPTGPTGPTGPTGDTGTTGPTGPTGPTGPTGPTGDTG 95

Query:   109 PTLPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQG 168
              T P GPT P GPT P GPT P G T   GPT   GPT   GPT   G T P GPT   G
Sbjct:    96 TTGPTGPTGPTGPTGPTGPTGPTGDTGTTGPTGPTGPTGPTGPTGDTGTTGPTGPTGPTG 155

Query:   169 PTLLQGPRKGPTLPQGPTLPQGPTLPQDPT 198
             PT   GP  GPT P GPT P GPT P  PT
Sbjct:   156 PTGPTGPT-GPTGPTGPTGPTGPTGPTGPT 184

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_1222 BA_1222 "conserved hypothetical protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 81/150 (54%), Positives = 82/150 (54%)

Query:    49 WTLLQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQG 108
             +TL  GPT   GPT P GPT   GPT   GPT P G T   GPT    PT P GPT   G
Sbjct:    36 FTLPTGPTGPTGPTGPTGPTGPTGPTGPTGPTGPTGDTGTTGPTGPTGPTGPTGPTGDTG 95

Query:   109 PTLPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQG 168
              T P GPT P GPT P GPT P G T   GPT   GPT   GPT   G T P GPT   G
Sbjct:    96 TTGPTGPTGPTGPTGPTGPTGPTGDTGTTGPTGPTGPTGPTGPTGDTGTTGPTGPTGPTG 155

Query:   169 PTLLQGPRKGPTLPQGPTLPQGPTLPQDPT 198
             PT   GP  GPT P GPT P GPT P  PT
Sbjct:   156 PTGPTGPT-GPTGPTGPTGPTGPTGPTGPT 184

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q81WX2 BA_3841 "Uncharacterized protein" [Bacillus anthracis (taxid:1392)]

 Score = 224 (83.9 bits), Expect = 7.1e-18, P = 7.1e-18
 Identities = 68/161 (42%), Positives = 74/161 (45%)

Query:    51 LLQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPT 110
             L+   + +QGPT P GPT   GP    G T PQG   P G T    P   QGP    G T
Sbjct:   149 LVNSASFIQGPTGPTGPT---GPAGATGATGPQGVQGPAGATGATGPQGVQGPAGATGAT 205

Query:   111 LPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPT 170
              PQG   P G T   GP   QGP    G T   GP  +QGP    G T PQG   +QGPT
Sbjct:   206 GPQGAQGPAGATGATGPQGAQGPAGATGAT---GPQGIQGPAGATGATGPQG---VQGPT 259

Query:   171 LLQGPR-KGPTLPQG-PTLPQGPTLPQDPTLLQDPTLLQGP 209
                G    GPT P G P    GP  PQ  T    P  +QGP
Sbjct:   260 GATGIGVTGPTGPSGGPAGATGPQGPQGNTGATGPQGIQGP 300

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_3841 BA_3841 "conserved hypothetical protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 224 (83.9 bits), Expect = 7.1e-18, P = 7.1e-18
 Identities = 68/161 (42%), Positives = 74/161 (45%)

Query:    51 LLQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPT 110
             L+   + +QGPT P GPT   GP    G T PQG   P G T    P   QGP    G T
Sbjct:   149 LVNSASFIQGPTGPTGPT---GPAGATGATGPQGVQGPAGATGATGPQGVQGPAGATGAT 205

Query:   111 LPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPT 170
              PQG   P G T   GP   QGP    G T   GP  +QGP    G T PQG   +QGPT
Sbjct:   206 GPQGAQGPAGATGATGPQGAQGPAGATGAT---GPQGIQGPAGATGATGPQG---VQGPT 259

Query:   171 LLQGPR-KGPTLPQG-PTLPQGPTLPQDPTLLQDPTLLQGP 209
                G    GPT P G P    GP  PQ  T    P  +QGP
Sbjct:   260 GATGIGVTGPTGPSGGPAGATGPQGPQGNTGATGPQGIQGP 300

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1LT09 Wdr33 "Protein Wdr33" [Rattus norvegicus (taxid:10116)]

 Score = 231 (86.4 bits), Expect = 7.4e-18, P = 7.4e-18
 Identities = 71/165 (43%), Positives = 81/165 (49%)

Query:    54 GPTLLQGPTLPQG---PTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPT 110
             GP   QGP  PQG   P  + GP  +Q    P GP  PQGP   Q  + PQG    QGP 
Sbjct:   649 GPQGPQGP--PQGLPRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQGSSGPQGHMGPQGPP 706

Query:   111 LPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQG----PTL- 165
              PQG   PQGP  PQG   PQGP   QG   +QGP    GP  +QGP  P G    PT  
Sbjct:   707 GPQGHIGPQGPPAPQGHMGPQGPPGTQG---MQGPP---GPRGMQGPPHPHGIQGGPTSQ 760

Query:   166 -LQGPTLLQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGP 209
              +QGP +   PR G   P GP   QGP  PQ   +   P  ++GP
Sbjct:   761 GIQGPLMGLNPR-GMQGPPGPRENQGPA-PQGIMIGHPPQEMRGP 803

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|J9P7B0 ZDBF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 230 (86.0 bits), Expect = 2.1e-17, P = 2.1e-17
 Identities = 42/114 (36%), Positives = 72/114 (63%)

Query:    79 PTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQGPTLPQGPTLPQGPTLPQGPTLLQG 138
             PT P G + P GP+    P++P GP++  GP++P+GP++P GP++  GP++P GP++  G
Sbjct:  2349 PT-PPGSSGPPGPSGPPGPSVPPGPSVAPGPSVPRGPSVPPGPSVAPGPSVPPGPSVALG 2407

Query:   139 PTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLLQGPRKGPTLP--QGPTLPQG 190
             P++  GP++  GP++  GP++P GP++ +GP++          P  QG   P G
Sbjct:  2408 PSVTPGPSVPPGPSVTPGPSVPPGPSVPRGPSVAVAASGSTAKPPAQGACPPAG 2461

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

RGD|628797 Prpmp5 "proline-rich protein MP5" [Rattus norvegicus (taxid:10116)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 69/167 (41%), Positives = 70/167 (41%)

Query:    53 QGPTLLQGPTL--PQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPT 110
             QGP    GP    PQGP    GP     P  PQGP  P GP   Q P  PQGP    GP 
Sbjct:   116 QGPPPPGGPQQRPPQGPPPQGGPQRPPQPGSPQGPPPPGGPQ--QRP--PQGPPPQGGPQ 171

Query:   111 LPQGPTLPQGPTLPQGPT--LPQGPTLLQGPTLLQGPTLLQGPTLLQGPTL--PQGPTLL 166
              P  P  PQGP  P GP    PQGP    GP     P   QGP    GP    PQGP   
Sbjct:   172 RPPQPGSPQGPPPPGGPQQRAPQGPPPQGGPQRPPQPGSPQGPPPPGGPQQRPPQGPPPQ 231

Query:   167 QGPTL--LQGPRKGPTLPQGPTL--PQGPTLPQDPTLLQDPTLLQGP 209
              GP      G  +GP  P GP    PQGP     P     P   QGP
Sbjct:   232 GGPQRPPQPGSPQGPPPPGGPQQRPPQGPPPQGGPQRPPQPGNPQGP 278

GO:0005576 "extracellular region" evidence=IEA

MGI|MGI:1921570 Wdr33 "WD repeat domain 33" [Mus musculus (taxid:10090)]

 Score = 225 (84.3 bits), Expect = 3.3e-17, P = 3.3e-17
 Identities = 71/161 (44%), Positives = 79/161 (49%)

Query:    53 QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQ---GPTLLQDPTLPQGPTLLQGP 109
             QGP + QG   PQG    QGP   QGP  PQG   PQ   GP  +Q    P GP   QGP
Sbjct:   637 QGPPMHQGGGGPQGFMGPQGP---QGP--PQGLPRPQDMHGPQGMQRHPGPHGPLGPQGP 691

Query:   110 TLPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGP 169
               PQG + PQG   PQGP  PQG    QGP   QG    QGP   QG   P GP  +QGP
Sbjct:   692 PGPQGSSGPQGHMGPQGPPGPQGHIGPQGPPASQGHMGPQGPPGTQGMQGPPGPRGMQGP 751

Query:   170 TLLQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
                 G + GP   QG    QGP +  +P  +Q P    GPR
Sbjct:   752 PHPHGIQGGPA-SQGI---QGPLMGLNPRGMQGPP---GPR 785

GO:0003674 "molecular_function" evidence=ND

GO:0005581 "collagen" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|I3LTD5 WDR33 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 220 (82.5 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 74/170 (43%), Positives = 83/170 (48%)

Query:    54 GPTLLQGPTLPQG---PTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPT 110
             GP   QGP  PQG   P  + GP  +Q    P GP  PQGP   Q  + PQG    QGP 
Sbjct:   655 GPQGPQGP--PQGLPRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQGNSGPQGHMGPQGPP 712

Query:   111 LPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQG----PTL- 165
              PQG   PQGP  PQG   PQGP   QG   +QGP    GP  +QGP  P G    P   
Sbjct:   713 GPQGHIGPQGPPGPQGHLGPQGPPGTQG---MQGPP---GPRGMQGPPHPHGIQGGPGSQ 766

Query:   166 -LQGPTLLQGPRKG--PTLPQGPTLP---QGPTLPQDPTLLQDPTLLQGP 209
              +QGP + QGP  G  P   QGP  P   QGP  PQ   L   P  ++GP
Sbjct:   767 GIQGP-VSQGPLMGLNPRGMQGPPGPRETQGPA-PQGMMLGHPPQEMRGP 814

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q9C0J8 WDR33 "pre-mRNA 3' end processing protein WDR33" [Homo sapiens (taxid:9606)]

 Score = 219 (82.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 73/170 (42%), Positives = 83/170 (48%)

Query:    54 GPTLLQGPTLPQG---PTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPT 110
             GP   QGP  PQG   P  + GP  +Q    P GP  PQGP   Q  + PQG    QGP 
Sbjct:   654 GPQGPQGP--PQGLPRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQGSSGPQGHMGPQGPP 711

Query:   111 LPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQG----PTL- 165
              PQG   PQGP  PQG   PQGP   QG   +QGP    GP  +QGP  P G    P   
Sbjct:   712 GPQGHIGPQGPPGPQGHLGPQGPPGTQG---MQGPP---GPRGMQGPPHPHGIQGGPGSQ 765

Query:   166 -LQGPTLLQGPRKG--PTLPQGPTLP---QGPTLPQDPTLLQDPTLLQGP 209
              +QGP + QGP  G  P   QGP  P   QGP  PQ   +   P  ++GP
Sbjct:   766 GIQGP-VSQGPLMGLNPRGMQGPPGPRENQGPA-PQGMIMGHPPQEMRGP 813

GO:0005581 "collagen" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0006301 "postreplication repair" evidence=NAS

GO:0007283 "spermatogenesis" evidence=NAS

GO:0005730 "nucleolus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	295
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	1e-05
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	2e-05
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	2e-05
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	6e-05
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.001
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.002
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.003
pfam07133	164	pfam07133, Merozoite_SPAM, Merozoite surface prote	0.003
smart00784	106	smart00784, SPT2, SPT2 chromatin protein	0.003
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.004

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 67  PTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQGPTLPQGPTLPQG 126
           PTL + P   + P  P+ P  P+ P   + P   Q PT  + P LP+   +P+ P  P+ 
Sbjct: 573 PTLSKKP---EFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPES 629

Query: 127 PTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGP 163
           P  P+ P   Q P+  + P   +GP +++ P  P+ P
Sbjct: 630 PKSPKRPPPPQRPSSPERP---EGPKIIKSPKPPKSP 663

Length = 943

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 38/135 (28%), Positives = 55/135 (40%), Gaps = 19/135 (14%)

Query: 79  PTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQGPTLPQGPTLPQGPTLPQGPTLLQG 138
           PTL + P  P+ P   +DP  P+ P   + P   Q PT P+ P LP+   +P+ P   + 
Sbjct: 573 PTLSKKPEFPKDPKHPKDPEEPKKP---KRPRSAQRPTRPKSPKLPELLDIPKSPKRPES 629

Query: 139 PTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLLQGPRKGPTLPQGPTLPQGPTLPQDPT 198
           P   + P   Q P+    P  P+GP             K    P+ P  P+ P  P+   
Sbjct: 630 PKSPKRPPPPQRPS---SPERPEGP-------------KIIKSPKPPKSPKPPFDPKFKE 673

Query: 199 LLQDPTLLQGPRYKE 213
              D  L    + KE
Sbjct: 674 KFYDDYLDAAAKSKE 688

Length = 943

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 55  PTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQG 114
           PTL + P  P+ P   + P   + P  P+ P   Q PT  + P LP+   + + P  P+ 
Sbjct: 573 PTLSKKPEFPKDP---KHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPES 629

Query: 115 PTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTL 165
           P  P+ P  PQ P+ P+ P         +GP +++ P   + P  P  P  
Sbjct: 630 PKSPKRPPPPQRPSSPERP---------EGPKIIKSPKPPKSPKPPFDPKF 671

Length = 943

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 44.3 bits (104), Expect = 6e-05
 Identities = 24/81 (29%), Positives = 38/81 (46%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
           + P   + P  P+ P   + P   Q PT P+ P LP+   + + P  P+ P   + P  P
Sbjct: 580 EFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPP 639

Query: 113 QGPTLPQGPTLPQGPTLPQGP 133
           Q P+ P+ P  P+    P+ P
Sbjct: 640 QRPSSPERPEGPKIIKSPKPP 660

Length = 943

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 42/160 (26%), Positives = 46/160 (28%), Gaps = 7/160 (4%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQG-PTLPQGPTLLQDPTLPQGPTLLQGPT 110
           LQ          P    L QG    Q     QG P  P G            P  +Q   
Sbjct: 163 LQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPP----QGHPEQVQPQQ 218

Query: 111 LPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPT 170
               P+       P  P LPQ P  LQ P        +  P         Q P     P 
Sbjct: 219 FLPAPS-QAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPP 277

Query: 171 LLQGPRKGPTLPQGPTLPQGP-TLPQDPTLLQDPTLLQGP 209
               P   P LPQG   P  P   PQ   L+Q P   Q  
Sbjct: 278 PQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRG 317

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 29/134 (21%), Positives = 37/134 (27%)

Query: 62   TLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQGPTLPQGP 121
                 P     P     PT P  P  P  P+L    ++  G  + + P        P  P
Sbjct: 2819 PPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAP 2878

Query: 122  TLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLLQGPRKGPTL 181
              P    L +        +    P   + P   Q P  PQ       P   Q P   P  
Sbjct: 2879 ARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPR 2938

Query: 182  PQGPTLPQGPTLPQ 195
            PQ P  P       
Sbjct: 2939 PQPPLAPTTDPAGA 2952

Length = 3151

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 224 ETEDEEEESDTEDIRDDDDDDMEIVVCTSQDSEDLPGPSHSKRMRGTRELLTMKLDSCLH 283
           + +DEEEE    D  DDD+DDM  +     D E+       +R    +E+   KLD+ + 
Sbjct: 224 DIDDEEEERVLADEDDDDEDDMFDM--DDDDEEESDPE--VERTSTIKEVSE-KLDAIMD 278

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM)

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 212 KEKELVERSAYGETEDEEEESDTEDIR--DDDDDDMEIVVCTSQDSED 257
           KE E V+     E ++EEEE D E+I   +D +D+ EIV    ++ ED
Sbjct: 38  KENEDVKDEK-QEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEED 84

This family consists of several Plasmodium falciparum SPAM (secreted polymorphic antigen associated with merozoites) proteins. Variation among SPAM alleles is the result of deletions and amino acid substitutions in non-repetitive sequences within and flanking the alanine heptad-repeat domain. Heptad repeats in which the a and d position contain hydrophobic residues generate amphipathic alpha-helices which give rise to helical bundles or coiled-coil structures in proteins. SPAM is an example of a P. falciparum antigen in which a repetitive sequence has features characteristic of a well-defined structural element. Length = 164

>gnl|CDD|214818 smart00784, SPT2, SPT2 chromatin protein

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 15/52 (28%)

Query: 210 RYKEKELVERSAYGETEDEEEESDTEDIR---------------DDDDDDME 246
            Y E+E  +   + E +DEE++ D ++I                DDDDDDME
Sbjct: 14  DYDEEEDEDMDDFIEDDDEEDDYDRDEIWAMFNKGRKRYAYRDDDDDDDDME 65

This entry includes the Saccharomyces cerevisiae protein SPT2 which is a chromatin protein involved in transcriptional regulation. Length = 106

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 38.4 bits (89), Expect = 0.004
 Identities = 27/140 (19%), Positives = 34/140 (24%), Gaps = 1/140 (0%)

Query: 60   GPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQGPTLPQ 119
                P  P     P +  GP  P GP  P  P     P  P  P         +      
Sbjct: 2729 RQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAV 2788

Query: 120  GPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQ-GPTLLQGPRKG 178
                    +LP        P  +  P     P       LP   +     P    GP   
Sbjct: 2789 ASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPP 2848

Query: 179  PTLPQGPTLPQGPTLPQDPT 198
                 G   P G    + P+
Sbjct: 2849 SLPLGGSVAPGGDVRRRPPS 2868

Length = 3151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	295
KOG3546|consensus	1167		99.66
KOG3546|consensus	1167		99.63
KOG3544|consensus	327		99.62
KOG3544|consensus	327		99.62

>KOG3546|consensus

Probab=99.66  E-value=4.5e-15  Score=144.16  Aligned_cols=16  Identities=25%  Similarity=0.108  Sum_probs=6.6

Q ss_pred             CCCCCCCCCCCCCCCC
Q psy13778         51 LLQGPTLLQGPTLPQG   66 (295)
Q Consensus        51 ~~~G~~G~~G~~G~~G   66 (295)
                      +++|++|++|.+|.+|
T Consensus       432 gppgppgppg~pg~pg  447 (1167)
T KOG3546|consen  432 GPPGPPGPPGVPGLPG  447 (1167)
T ss_pred             CCCCCCCCCCCCCCCC
Confidence            3444444444433333

>KOG3546|consensus

Probab=99.63  E-value=1.7e-14  Score=140.22  Aligned_cols=15  Identities=20%  Similarity=0.095  Sum_probs=6.7

Q ss_pred             CCCCCCCCCCCCCCC
Q psy13778         50 TLLQGPTLLQGPTLP   64 (295)
Q Consensus        50 ~~~~G~~G~~G~~G~   64 (295)
                      .+++|++|.+|.+|.
T Consensus       434 pgppgppg~pg~pg~  448 (1167)
T KOG3546|consen  434 PGPPGPPGVPGLPGE  448 (1167)
T ss_pred             CCCCCCCCCCCCCCC
Confidence            444444444444443

>KOG3544|consensus

Probab=99.62  E-value=3.3e-14  Score=133.19  Aligned_cols=18  Identities=11%  Similarity=-0.143  Sum_probs=14.1

Q ss_pred             cCcccccccccccCCCCC
Q psy13778          4 DQCYYRVRCRYTRYPPPH   21 (295)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~   21 (295)
                      ++|+.+...+|.+++...
T Consensus        53 ~~~~~~~~~~~~~~~~~~   70 (327)
T KOG3544|consen   53 GFFGERGDPGWPGPTGPP   70 (327)
T ss_pred             cccccccccccccccccc
Confidence            578888889999877553

>KOG3544|consensus

Probab=99.62  E-value=1.1e-14  Score=136.39  Aligned_cols=23  Identities=30%  Similarity=0.407  Sum_probs=12.7

Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCC
Q psy13778         49 WTLLQGPTLLQGPTLPQGPTLLQ   71 (295)
Q Consensus        49 ~~~~~G~~G~~G~~G~~G~~G~~   71 (295)
                      ..|++|++|++|.+|..|.+|.+
T Consensus       109 ~~cp~GppGp~G~pG~~G~pG~~  131 (327)
T KOG3544|consen  109 EKCPPGPPGPPGPPGPPGPPGVP  131 (327)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCC
Confidence            35556666665555555555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	295
1wck_A	220	BCLA protein; collagen-like protein, bacterial sur	4e-14
1wck_A	220	BCLA protein; collagen-like protein, bacterial sur	5e-13
1wck_A	220	BCLA protein; collagen-like protein, bacterial sur	6e-13
1wck_A	220	BCLA protein; collagen-like protein, bacterial sur	3e-11
1wck_A	220	BCLA protein; collagen-like protein, bacterial sur	2e-09
1wck_A	220	BCLA protein; collagen-like protein, bacterial sur	4e-09
1wck_A	220	BCLA protein; collagen-like protein, bacterial sur	6e-06
1wck_A	220	BCLA protein; collagen-like protein, bacterial sur	7e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-08
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-08
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-08
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-08
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-08
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-08
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-08
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	8e-08
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	9e-08
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	8e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	8e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	8e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	9e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	9e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	9e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-08
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-08
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-08
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	8e-08
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	8e-08
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	9e-08
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	8e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	9e-05
1rm1_C	286	Transcription initiation factor IIA large chain; y	1e-05

>1wck_A BCLA protein; collagen-like protein, bacterial surface antigen, jelly- roll topology, structural protein; 1.36A {Bacillus anthracis} Length = 220

 Score = 69.2 bits (169), Expect = 4e-14
 Identities = 46/141 (32%), Positives = 49/141 (34%), Gaps = 10/141 (7%)

Query: 58  LQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQGPTL 117
           +       GPTL   P      TLP GPT P GPT    PT P GPT   G T   GPT 
Sbjct: 1   MAFDPNLVGPTLPPIP----PFTLPTGPTGPTGPTGPTGPTGPTGPT---GDTGTTGPTG 53

Query: 118 PQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLLQGPRK 177
           P GPT P GPT   G T   GPT   G      P  L           L     +     
Sbjct: 54  PTGPTGPTGPTGATGLTGPTGPTGPSGLG---LPAGLYAFNSGGISLDLGINDPVPFNTV 110

Query: 178 GPTLPQGPTLPQGPTLPQDPT 198
           G       +     T     T
Sbjct: 111 GSQFGTAISQLDADTFVISET 131

>1wck_A BCLA protein; collagen-like protein, bacterial surface antigen, jelly- roll topology, structural protein; 1.36A {Bacillus anthracis} Length = 220

 Score = 66.2 bits (161), Expect = 5e-13
 Identities = 48/129 (37%), Positives = 51/129 (39%), Gaps = 7/129 (5%)

Query: 76  LQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQGPTLPQGPTLPQGPTLPQGPTL 135
           +       GPTLP  P      TLP GPT   GPT P GPT P GPT P G T   GPT 
Sbjct: 1   MAFDPNLVGPTLPPIPP----FTLPTGPT---GPTGPTGPTGPTGPTGPTGDTGTTGPTG 53

Query: 136 LQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLLQGPRKGPTLPQGPTLPQGPTLPQ 195
             GPT   GPT   G T   GPT P G  L  G            L     +P      Q
Sbjct: 54  PTGPTGPTGPTGATGLTGPTGPTGPSGLGLPAGLYAFNSGGISLDLGINDPVPFNTVGSQ 113

Query: 196 DPTLLQDPT 204
             T +    
Sbjct: 114 FGTAISQLD 122

>1wck_A BCLA protein; collagen-like protein, bacterial surface antigen, jelly- roll topology, structural protein; 1.36A {Bacillus anthracis} Length = 220

 Score = 65.8 bits (160), Expect = 6e-13
 Identities = 39/175 (22%), Positives = 50/175 (28%), Gaps = 19/175 (10%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
             PT   GPT P GPT   GPT   G T   GPT P GPT    PT   G T   GPT P
Sbjct: 19  TLPTGPTGPTGPTGPTGPTGPTGPTGDTGTTGPTGPTGPTGPTGPTGATGLTGPTGPTGP 78

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQ------------------GPTLL 154
            G  LP G        +     +          +                         +
Sbjct: 79  SGLGLPAGLYAFNSGGISLDLGINDPVPFNTVGSQFGTAISQLDADTFVISETGFYKITV 138

Query: 155 QGPTLPQGPTLLQGPTLLQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGP 209
              T            +   P    T     +L     +     +   P+L++  
Sbjct: 139 IANTATASVLGGLTIQVNGVP-VPGTGSSLISLGAPIVIQAITQITTTPSLVEVI 192

>1wck_A BCLA protein; collagen-like protein, bacterial surface antigen, jelly- roll topology, structural protein; 1.36A {Bacillus anthracis} Length = 220

 Score = 60.8 bits (147), Expect = 3e-11
 Identities = 39/157 (24%), Positives = 43/157 (27%), Gaps = 7/157 (4%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
              TL  GPT P GPT   GPT   GPT   G T P GPT    PT P G     G T P
Sbjct: 16  PPFTLPTGPTGPTGPTGPTGPTGPTGPTGDTGTTGPTGPTGPTGPTGPTGA---TGLTGP 72

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            GPT P G  LP G        +     +          +                    
Sbjct: 73  TGPTGPSGLGLPAGLYAFNSGGISLDLGINDPVPFNTVGSQFGTAISQLDADTFVISE-- 130

Query: 173 QGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGP 209
                        T            +   P    G 
Sbjct: 131 --TGFYKITVIANTATASVLGGLTIQVNGVPVPGTGS 165

>1wck_A BCLA protein; collagen-like protein, bacterial surface antigen, jelly- roll topology, structural protein; 1.36A {Bacillus anthracis} Length = 220

 Score = 55.4 bits (133), Expect = 2e-09
 Identities = 17/137 (12%), Positives = 29/137 (21%), Gaps = 1/137 (0%)

Query: 50  TLLQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGP 109
           T   GPT   G  LP G        +     +          +                 
Sbjct: 70  TGPTGPTGPSGLGLPAGLYAFNSGGISLDLGINDPVPFNTVGSQFGTAISQLDADTFVIS 129

Query: 110 TLPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGP 169
                       T            +   P    G +L+     +    + Q  T     
Sbjct: 130 ETGFYKITVIANTATASVLGGLTIQVNGVPVPGTGSSLISLGAPIVIQAITQITTTPSLV 189

Query: 170 TLLQGPRKGPTLPQGPT 186
            ++     G +L  G +
Sbjct: 190 EVIVTG-LGLSLALGTS 205

>1wck_A BCLA protein; collagen-like protein, bacterial surface antigen, jelly- roll topology, structural protein; 1.36A {Bacillus anthracis} Length = 220

 Score = 55.0 bits (132), Expect = 4e-09
 Identities = 22/149 (14%), Positives = 33/149 (22%), Gaps = 1/149 (0%)

Query: 50  TLLQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGP 109
           T   GPT   G T P GPT   G  L  G        +     +          +     
Sbjct: 58  TGPTGPTGATGLTGPTGPTGPSGLGLPAGLYAFNSGGISLDLGINDPVPFNTVGSQFGTA 117

Query: 110 TLPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGP 169
                                   T            +   P    G +L      +   
Sbjct: 118 ISQLDADTFVISETGFYKITVIANTATASVLGGLTIQVNGVPVPGTGSSLISLGAPIVIQ 177

Query: 170 TLLQGPRKGPTLPQGPTLPQGPTLPQDPT 198
            + Q     P+L +      G +L    +
Sbjct: 178 AITQITT-TPSLVEVIVTGLGLSLALGTS 205

>1wck_A BCLA protein; collagen-like protein, bacterial surface antigen, jelly- roll topology, structural protein; 1.36A {Bacillus anthracis} Length = 220

 Score = 45.4 bits (107), Expect = 6e-06
 Identities = 12/116 (10%), Positives = 26/116 (22%)

Query: 49  WTLLQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQG 108
           +        L         T+                 + +                + G
Sbjct: 90  FNSGGISLDLGINDPVPFNTVGSQFGTAISQLDADTFVISETGFYKITVIANTATASVLG 149

Query: 109 PTLPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPT 164
               Q   +P   T     +L     +     +   P+L++      G +L  G +
Sbjct: 150 GLTIQVNGVPVPGTGSSLISLGAPIVIQAITQITTTPSLVEVIVTGLGLSLALGTS 205

>1wck_A BCLA protein; collagen-like protein, bacterial surface antigen, jelly- roll topology, structural protein; 1.36A {Bacillus anthracis} Length = 220

 Score = 42.3 bits (99), Expect = 7e-05
 Identities = 36/92 (39%), Positives = 36/92 (39%), Gaps = 17/92 (18%)

Query: 120 GPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLLQGPRKGP 179
                 GPTLP  P      TL  GPT   GPT   GPT P GPT             G 
Sbjct: 3   FDPNLVGPTLPPIP----PFTLPTGPTGPTGPTGPTGPTGPTGPT-------------GD 45

Query: 180 TLPQGPTLPQGPTLPQDPTLLQDPTLLQGPRY 211
           T   GPT P GPT P  PT     T   GP  
Sbjct: 46  TGTTGPTGPTGPTGPTGPTGATGLTGPTGPTG 77

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 40/158 (25%), Positives = 50/158 (31%), Gaps = 1/158 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            GP  +QGP  P G    +G     GP+   GP   +G    +      G    +GP   
Sbjct: 289 PGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGE 348

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
           +G   P GP    G     G   L G   L G     GP    GP  P G     GP   
Sbjct: 349 RGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGP 408

Query: 173 QGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
            G  +G     G   P+G          +      G  
Sbjct: 409 PGA-RGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAV 445

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 38/158 (24%), Positives = 47/158 (29%), Gaps = 1/158 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
           +QGP    G    +G     GP+ L GP   +G    +G         P+GP   +G   
Sbjct: 294 VQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPG 353

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
           P GP    G     G     G   L G     GP    GP    G     GP    G   
Sbjct: 354 PAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARG 413

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGP 209
             G   G   P+G     G    +            G 
Sbjct: 414 QAGV-MGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGK 450

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 52.8 bits (127), Expect = 6e-08
 Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 1/143 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
           +G    +G     G    +G     GP  P G     G      P    G     GP  P
Sbjct: 853 EGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGP 912

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            GP  P G   P GP  P+G     G    +G    +G + LQGP  P G    QGP+  
Sbjct: 913 IGPVGPAGARGPAGPQGPRGDKGETGEEGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGA 972

Query: 173 QGPRKGPTLPQGPTLPQGPTLPQ 195
            GP  GP  P G     G     
Sbjct: 973 SGP-AGPRGPPGSAGSPGKDGLN 994

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 52.8 bits (127), Expect = 7e-08
 Identities = 38/158 (24%), Positives = 44/158 (27%), Gaps = 1/158 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            GP+ L GP   +G    +G     G   P+GP   +G      P    G     G    
Sbjct: 313 PGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGL 372

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            G     G     GP    GP    G     GP    G     G     GP    G    
Sbjct: 373 PGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGK 432

Query: 173 QGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
            G  +G   P G   P G            P    G R
Sbjct: 433 AGE-RGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGER 469

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 52.8 bits (127), Expect = 7e-08
 Identities = 36/140 (25%), Positives = 40/140 (28%), Gaps = 1/140 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
           +G     G    +G     G    +G   P GP    G           GP  L G    
Sbjct: 91  RGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGR 150

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            G   P G     G     GP    GPT   G     G     GP   +G    QG    
Sbjct: 151 PGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGE 210

Query: 173 QGPRKGPTLPQGPTLPQGPT 192
            GP  GP    GP    G  
Sbjct: 211 PGP-PGPAGAAGPAGNPGAD 229

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 52.4 bits (126), Expect = 7e-08
 Identities = 41/141 (29%), Positives = 48/141 (34%), Gaps = 1/141 (0%)

Query: 52   LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
              G    +G     GP    G     G   P GP    G      P  P GP    G   
Sbjct: 864  RDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARG 923

Query: 112  PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
            P GP  P+G     G    +G    +G + LQGP    G    QGP+   GP   +GP  
Sbjct: 924  PAGPQGPRGDKGETGEEGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPG 983

Query: 172  LQGPRKGPTLPQGPTLPQGPT 192
              G   G     G   P GP 
Sbjct: 984  SAGS-PGKDGLNGLPGPIGPP 1003

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 52.4 bits (126), Expect = 7e-08
 Identities = 45/161 (27%), Positives = 55/161 (34%), Gaps = 2/161 (1%)

Query: 52   LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
            L GP    G     G     G     G    +G T P GP          GP    G + 
Sbjct: 843  LAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSG 902

Query: 112  PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             +G T P GP  P GP   +GP   QGP   +G T  +G   ++G     G     GP  
Sbjct: 903  DRGETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGEEGDRGIKGHRGFSGLQGPPGPPG 962

Query: 172  LQGPR--KGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
              G +   G + P GP  P G         L       GP 
Sbjct: 963  SPGEQGPSGASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPP 1003

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 52.4 bits (126), Expect = 8e-08
 Identities = 36/141 (25%), Positives = 38/141 (26%), Gaps = 1/141 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             G    +G   P GP    G     G     GP    G         P G     G   
Sbjct: 108 FSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAAG 167

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             GP  P GPT P G     G     GP   +G    QG     GP  P G     G   
Sbjct: 168 AAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPG 227

Query: 172 LQGPRKGPTLPQGPTLPQGPT 192
             G   G     G     G  
Sbjct: 228 ADGQ-PGAKGANGAPGIAGAP 247

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 52.0 bits (125), Expect = 9e-08
 Identities = 46/164 (28%), Positives = 58/164 (35%), Gaps = 5/164 (3%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
           L GP+   G   P G +  +GP    GP    GP    G           G     G   
Sbjct: 813 LPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKG 872

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
            +G T P GP    G     GP    G +  +G T   GP    GP   +GP   QGP  
Sbjct: 873 DRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPRG 932

Query: 172 LQGPR-----KGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
            +G       +G    +G +  QGP  P      Q P+   GP 
Sbjct: 933 DKGETGEEGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPA 976

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 34/140 (24%), Positives = 40/140 (28%), Gaps = 1/140 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            G     G   P GP   +G     G    +G     G    +    P GP    G    
Sbjct: 73  AGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGE 132

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            G     GP    G     G     G     G     GP    GPT P G     G    
Sbjct: 133 NGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGE 192

Query: 173 QGPRKGPTLPQGPTLPQGPT 192
            GP +G    +GP   +G  
Sbjct: 193 AGP-EGARGSEGPQGVRGEP 211

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 37/143 (25%), Positives = 42/143 (29%), Gaps = 2/143 (1%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             GP   +G     G   ++G     G    +G   P GP          G     GP  
Sbjct: 84  PPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRG 143

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             G     G   P G     G     GP    GPT   G     G     GP   +G   
Sbjct: 144 LPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEG 203

Query: 172 LQGPR--KGPTLPQGPTLPQGPT 192
            QG R   GP  P G   P G  
Sbjct: 204 PQGVRGEPGPPGPAGAAGPAGNP 226

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 41/159 (25%), Positives = 50/159 (31%), Gaps = 1/159 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             GP    G   P GP   +G   + G   P+G     G    +    P G     G   
Sbjct: 393 PPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDG 452

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             G   P GP  P G    QGP    G   L GP    G     G     G     GP+ 
Sbjct: 453 EAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSG 512

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
            +G R G    +G   P GP  P+           +G  
Sbjct: 513 ARGER-GFPGERGVEGPPGPAGPRGANGAPGNDGAKGDA 550

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 34/140 (24%), Positives = 37/140 (26%), Gaps = 1/140 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
           +G     G    +G     GP    G     G     GP  L       G     G    
Sbjct: 103 KGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGN 162

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            G     GP  P GPT P G     G     GP   +G    QG     GP    G    
Sbjct: 163 DGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGP 222

Query: 173 QGPRKGPTLPQGPTLPQGPT 192
            G   G     G     G  
Sbjct: 223 AGN-PGADGQPGAKGANGAP 241

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 44/159 (27%), Positives = 51/159 (32%), Gaps = 1/159 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
           L GP   +G   P+G     G   ++G T P GP  P G    +    P GP    G   
Sbjct: 576 LPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARG 635

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             G     GP  P G   P G     G     G    +G     GP  P GP    G   
Sbjct: 636 APGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVG 695

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
             GP KG     GP    G            P+   GP 
Sbjct: 696 APGP-KGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPP 733

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 40/158 (25%), Positives = 49/158 (31%), Gaps = 1/158 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             G   + GP  P G     GP   +G     G     G    +  T   G     G T 
Sbjct: 333 FPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTG 392

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
           P GP    G   P GP   +G   + G    +G     G    +G   P G     G   
Sbjct: 393 PPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDG 452

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGP 209
             G  +GP  P GP   +G   P      Q      GP
Sbjct: 453 EAGA-QGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGP 489

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 35/147 (23%), Positives = 42/147 (28%), Gaps = 1/147 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             G     GP   +G     G   ++G     G    +G      P    G     G   
Sbjct: 78  RPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPG 137

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             GP    G     G   P G     G     GP    GPT   G     G     GP  
Sbjct: 138 QMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEG 197

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPT 198
            +G  +GP   +G   P GP     P 
Sbjct: 198 ARGS-EGPQGVRGEPGPPGPAGAAGPA 223

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 38/159 (23%), Positives = 46/159 (28%), Gaps = 1/159 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             G     G     G   + GP    G     GP  P+G           G    +G T 
Sbjct: 321 PPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTG 380

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             G   P G T P GP    G     GP   +G   + G    +G     G    +G   
Sbjct: 381 SPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPG 440

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
             G   GP    G    QGP  P  P   +      G  
Sbjct: 441 PPGAV-GPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSP 478

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 40/159 (25%), Positives = 49/159 (30%), Gaps = 1/159 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             G +   GP  P GP    G     G     G   P GP   +      G   ++G   
Sbjct: 48  EPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRG 107

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             G    +G   P GP    G     G     GP  L G     G   P G     G   
Sbjct: 108 FSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAAG 167

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
             GP  GPT P GP    G    +     +     +GP+
Sbjct: 168 AAGP-PGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQ 205

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 40/142 (28%), Positives = 47/142 (33%), Gaps = 2/142 (1%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
           QG   LQG    +G   L GP   +G   P+G     G   ++  T P GP    G    
Sbjct: 559 QGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGD 618

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
           +G   P GP  P G     G     GP    G     G     G     G    +G    
Sbjct: 619 KGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGP 678

Query: 173 QGPR--KGPTLPQGPTLPQGPT 192
            GP    GP  P G     GP 
Sbjct: 679 PGPAGPAGPPGPIGNVGAPGPK 700

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 46/143 (32%), Positives = 52/143 (36%), Gaps = 2/143 (1%)

Query: 52   LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
              G     G   P GP    G     GP  P GP  P G      P  P+G     G   
Sbjct: 882  PPGAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGEEG 941

Query: 112  PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             +G    +G +  QGP  P G    QGP+   GP   +GP    G     G   L GP  
Sbjct: 942  DRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGSPGKDGLNGLPGPIG 1001

Query: 172  LQGPR--KGPTLPQGPTLPQGPT 192
              GPR   G   P GP  P GP 
Sbjct: 1002 PPGPRGRTGDAGPAGPPGPPGPP 1024

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 45/159 (28%), Positives = 57/159 (35%), Gaps = 1/159 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
           L G    +G     GP+   G     G +  +GP  P GP  L  P    G     G   
Sbjct: 801 LPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEG 860

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             G     G    +G T P GP    G     GP    G +  +G T P GP    GP  
Sbjct: 861 SPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAG 920

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
            +GP  GP  P+G     G    +     +  + LQGP 
Sbjct: 921 ARGPA-GPQGPRGDKGETGEEGDRGIKGHRGFSGLQGPP 958

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 39/145 (26%), Positives = 45/145 (31%), Gaps = 1/145 (0%)

Query: 53   QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
             GP    GP  P G     GP   +G     G    +G    +  +  QGP    G    
Sbjct: 907  TGPAGPIGPVGPAGARGPAGPQGPRGDKGETGEEGDRGIKGHRGFSGLQGPPGPPGSPGE 966

Query: 113  QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            QGP+   GP  P+GP    G     G   L GP    GP    G   P GP    GP   
Sbjct: 967  QGPSGASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPRGRTGDAGPAGPPGPPGPPGP 1026

Query: 173  QGPRKGPTLPQGPTLPQGPTLPQDP 197
             GP                    D 
Sbjct: 1027 PGP-PSGGYDLSFLPQPPQQKAHDK 1050

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 40/158 (25%), Positives = 43/158 (27%), Gaps = 1/158 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            G   L G     G     GP    GP  P G     GP          G     GP   
Sbjct: 367 PGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGA 426

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            G     G     GP    GP    G    QGP    GP   +G   P G    QG    
Sbjct: 427 AGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGP 486

Query: 173 QGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
            GP  G     G     G      P+  +      G R
Sbjct: 487 AGP-PGEAGKPGEQGVPGDLGAPGPSGARGERGFPGER 523

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 45/160 (28%), Positives = 54/160 (33%), Gaps = 2/160 (1%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            GP    GP   +G     GP    G   PQG    +G   L      +G   L GP+  
Sbjct: 760 VGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGE 819

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            G   P G +  +GP  P GP  L GP    G     G     G     G    +G T  
Sbjct: 820 PGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGP 879

Query: 173 QGPR--KGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
            GP    G     GP  P G +  +  T    P    GP 
Sbjct: 880 AGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPA 919

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 41/161 (25%), Positives = 50/161 (31%), Gaps = 2/161 (1%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             G    +G     G    QG   LQG    +G     GP   +    P+G     G   
Sbjct: 540 APGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDG 599

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
            +G T P GP  P G    +G     GP    G     G     GP  P G     G   
Sbjct: 600 VRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADG 659

Query: 172 LQGPR--KGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
             G +   G    +G   P GP  P  P          GP+
Sbjct: 660 QPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPK 700

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 43/139 (30%), Positives = 50/139 (35%), Gaps = 1/139 (0%)

Query: 53   QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
             GP    G     GP    G +  +G T P GP  P GP   + P  PQGP   +G T  
Sbjct: 880  AGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGE 939

Query: 113  QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            +G    +G     G   P GP    G     G +   GP    G     G   L G    
Sbjct: 940  EGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGSPGKDGLNGLPGP 999

Query: 173  QGPRKGPTLPQGPTLPQGP 191
             GP  GP    G   P GP
Sbjct: 1000 IGP-PGPRGRTGDAGPAGP 1017

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 41/158 (25%), Positives = 48/158 (30%), Gaps = 1/158 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
           +G T   G     GP    GP   +G     GP    G    Q     +G   L G    
Sbjct: 748 RGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGE 807

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
           +G     GP+   G   P G +  +GP    GP  L GP    G     G     G    
Sbjct: 808 RGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGS 867

Query: 173 QGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
            G  KG     GP  P G            P    G R
Sbjct: 868 PGA-KGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDR 904

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 35/140 (25%), Positives = 43/140 (30%), Gaps = 1/140 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
           +G     GP   +G     G     GPT P GP    G    +    P+G    +GP   
Sbjct: 148 RGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQGV 207

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
           +G   P GP    GP    G     G     G   + G     G   P GP    G    
Sbjct: 208 RGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSGAPGP 267

Query: 173 QGPRKGPTLPQGPTLPQGPT 192
           +G   G     G     G  
Sbjct: 268 KGN-SGEPGAPGNKGDTGAK 286

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 39/158 (24%), Positives = 48/158 (30%), Gaps = 1/158 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            G     GP  P+GP    G     G     G    +GP   Q      G   L G    
Sbjct: 46  PGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGH 105

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
           +G +   G     GP  P+G     G     G    +G    +G     GP   +G    
Sbjct: 106 RGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGA 165

Query: 173 QGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
            G   GP  P GPT P G            P   +G  
Sbjct: 166 AGA-AGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSE 202

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 38/159 (23%), Positives = 44/159 (27%), Gaps = 1/159 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             G     G + P GP    GP    G     G     G      P   +G     G   
Sbjct: 42  PPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPG 101

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
            +G     G    +G   P GP    G     G     GP  L G     G     G   
Sbjct: 102 MKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARG 161

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
             G   G   P GPT P GP         +     +G R
Sbjct: 162 NDGA-AGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGAR 199

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 46/159 (28%), Positives = 52/159 (32%), Gaps = 1/159 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             G   L GP  P GP    G     GP+ P GPT  +G    +    P GP    GP  
Sbjct: 597 KDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPG 656

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             G    +G     G     GP    GP    GP    G    +G     GP    G   
Sbjct: 657 ADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPG 716

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
             G   GP  P G   P GP  P      + P    GP 
Sbjct: 717 AAGR-VGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPA 754

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 42/159 (26%), Positives = 47/159 (29%), Gaps = 1/159 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             G     G     G    +G     GP  P GP  P G      P   +G     G T 
Sbjct: 654 PPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATG 713

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             G     GP  P G   P GP    G    +GP    GP    G   P GP    G   
Sbjct: 714 FPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKG 773

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
             G   GP    G   PQG    +    L      +G  
Sbjct: 774 APGA-DGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFP 811

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.1 bits (120), Expect = 5e-07
 Identities = 43/159 (27%), Positives = 48/159 (30%), Gaps = 1/159 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
           L G     GP    GP    G     GP  P G     G      P    G     G   
Sbjct: 378 LTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERG 437

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             GP    GP    G    QGP    GP   +G     G    QG   P GP    G   
Sbjct: 438 VPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPG 497

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
            QG   G     GP+  +G         ++ P    GPR
Sbjct: 498 EQGV-PGDLGAPGPSGARGERGFPGERGVEGPPGPAGPR 535

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.1 bits (120), Expect = 5e-07
 Identities = 42/140 (30%), Positives = 53/140 (37%), Gaps = 1/140 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            G     GP+   GP    GP   +G   P+G T P G      P  P GP   +G    
Sbjct: 718 AGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGA 777

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            GP    G   PQG    +G   L G    +G   L GP+   G   P G +  +GP   
Sbjct: 778 DGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGP 837

Query: 173 QGPRKGPTLPQGPTLPQGPT 192
            GP  G   P G +  +G  
Sbjct: 838 MGP-PGLAGPPGESGREGAP 856

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.1 bits (120), Expect = 5e-07
 Identities = 42/157 (26%), Positives = 54/157 (34%), Gaps = 1/157 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            G     G   P GP+   GP    GP   +G   P+G T         GP    GP   
Sbjct: 712 TGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGE 771

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
           +G     GP    G   PQG    +G   L G    +G   L GP+   G     G +  
Sbjct: 772 KGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGE 831

Query: 173 QGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGP 209
           +GP  GP  P G   P G +  +     +      G 
Sbjct: 832 RGP-PGPMGPPGLAGPPGESGREGAPGAEGSPGRDGS 867

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 37/142 (26%), Positives = 42/142 (29%), Gaps = 2/142 (1%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            GP  L G     G     G     G     GP  P GPT         G     GP   
Sbjct: 139 MGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGA 198

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
           +G   PQG     GP  P G     G     G    +G     G     G    +GP+  
Sbjct: 199 RGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGP 258

Query: 173 QGPR--KGPTLPQGPTLPQGPT 192
           +GP    GP    G     G  
Sbjct: 259 EGPSGAPGPKGNSGEPGAPGNK 280

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 38/141 (26%), Positives = 40/141 (28%), Gaps = 1/141 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             GP    G     G   L G   L G     GP    GP          GP    G   
Sbjct: 354 PAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARG 413

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             G     GP    G     G   + GP    GP    G    QGP  P GP   +G   
Sbjct: 414 QAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQG 473

Query: 172 LQGPRKGPTLPQGPTLPQGPT 192
             G   G     GP  P G  
Sbjct: 474 PAGS-PGFQGLPGPAGPPGEA 493

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 44/158 (27%), Positives = 50/158 (31%), Gaps = 1/158 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
           +G     GP  P G     G     GP  P G   P G           G    +G   P
Sbjct: 619 KGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGP 678

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            GP  P GP  P G     GP   +G     G T   G     GP  P G     GP   
Sbjct: 679 PGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGP 738

Query: 173 QGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
            G  +G   P+G T P G      P     P   +G  
Sbjct: 739 AGK-EGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAP 775

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 38/140 (27%), Positives = 39/140 (27%), Gaps = 1/140 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            G     G     G   L G     GP    GP  P G      P  P G     G    
Sbjct: 361 PGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGF 420

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            GP    G     G     GP    GP    G    QGP    GP   +G     G    
Sbjct: 421 PGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGF 480

Query: 173 QGPRKGPTLPQGPTLPQGPT 192
           QG   GP  P G     G  
Sbjct: 481 QGL-PGPAGPPGEAGKPGEQ 499

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 37/160 (23%), Positives = 45/160 (28%), Gaps = 2/160 (1%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
            +G     G    +G     G    QG    QG    +G   L  P   +G    +G   
Sbjct: 534 PRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADG 593

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             G    +G T P GP  P G    +G     GP    G     G     GP    G   
Sbjct: 594 APGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAG 653

Query: 172 LQGPR--KGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGP 209
             G     G     G    +G   P  P     P    G 
Sbjct: 654 PPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGN 693

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 43/159 (27%), Positives = 47/159 (29%), Gaps = 1/159 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             G     G     G     G    +G   P GP  P GP          GP   +G   
Sbjct: 648 PAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAG 707

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
           P G T   G     GP  P G     GP    G    +GP    GP    G     GP  
Sbjct: 708 PPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPG 767

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
             G  KG     GP    G   PQ     +    L G R
Sbjct: 768 PAGE-KGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQR 805

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 40/147 (27%), Positives = 46/147 (31%), Gaps = 1/147 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
            +G     GP  P GP    G     GP   +G   P G T         GP    G   
Sbjct: 672 AKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAG 731

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
           P GP  P G    +GP    GP    G     GP    G     G   P G     GP  
Sbjct: 732 PPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQG 791

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPT 198
           + G R G     G    +G      P+
Sbjct: 792 IAGQR-GVVGLPGQRGERGFPGLPGPS 817

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 39/141 (27%), Positives = 48/141 (34%), Gaps = 1/141 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             GP    GP   +G    +G T   G     GP  P GP   +      GP    G   
Sbjct: 729 NAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPG 788

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
           PQG    +G     G    +G   L GP+   G     G +  +GP  P GP  L GP  
Sbjct: 789 PQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPG 848

Query: 172 LQGPRKGPTLPQGPTLPQGPT 192
             G   G    +G     G  
Sbjct: 849 ESGRE-GAPGAEGSPGRDGSP 868

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.3 bits (118), Expect = 9e-07
 Identities = 39/147 (26%), Positives = 46/147 (31%), Gaps = 1/147 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             G     GP  P GP   +G     GP    G   PQG    +      G    +G   
Sbjct: 753 PAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPG 812

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             GP+   G   P G +  +GP    GP  L GP    G     G     G     G   
Sbjct: 813 LPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKG 872

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPT 198
            +G   GP  P G     G   P  P 
Sbjct: 873 DRGE-TGPAGPPGAPGAPGAPGPVGPA 898

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.3 bits (118), Expect = 9e-07
 Identities = 39/159 (24%), Positives = 52/159 (32%), Gaps = 1/159 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
           + G   + G    +G     G     G    QGP+   G      P  P G     G + 
Sbjct: 792 IAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESG 851

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
            +G    +G     G    +G     GP    G     G     GP    G     GP  
Sbjct: 852 REGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAG 911

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
             GP  GP   +GP  PQGP   +  T  +    ++G R
Sbjct: 912 PIGP-VGPAGARGPAGPQGPRGDKGETGEEGDRGIKGHR 949

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.3 bits (118), Expect = 9e-07
 Identities = 42/144 (29%), Positives = 52/144 (36%), Gaps = 1/144 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
            +G     GP    G     G     GP+   GP  P GP   +    P+G T   G   
Sbjct: 699 PKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPG 758

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             GP  P GP   +G     GP    G    QG    +G   L G    +G   L GP+ 
Sbjct: 759 EVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSG 818

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQ 195
             G  +GP+   G   P GP  P 
Sbjct: 819 EPGK-QGPSGASGERGPPGPMGPP 841

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 41/160 (25%), Positives = 45/160 (28%), Gaps = 2/160 (1%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            G     GP  P G     G     G     G    +G      P  P GP    G    
Sbjct: 637 PGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGA 696

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            GP   +G   P G T   G     GP    G     GP    G    +GP    GP   
Sbjct: 697 PGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGR 756

Query: 173 QGPR--KGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
            G     GP  P G     G   P        P  + G R
Sbjct: 757 PGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQR 796

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 41/160 (25%), Positives = 53/160 (33%), Gaps = 2/160 (1%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
           +GP+  +GP+   GP    G     G     G     GP  +Q P  P G    +G    
Sbjct: 253 RGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGE 312

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            GP+   GP   +G    +G     G    +GP   +G     GP    G     G   L
Sbjct: 313 PGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGL 372

Query: 173 QGPR--KGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
            G +   G     GP    GP  P        P    G R
Sbjct: 373 PGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGAR 412

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 38/143 (26%), Positives = 40/143 (27%), Gaps = 2/143 (1%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
           L G   L G     GP    GP    G     GP  P G           GP    G   
Sbjct: 372 LPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPG 431

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             G     GP    GP    G    QGP    GP   +G     G    QG     GP  
Sbjct: 432 KAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPG 491

Query: 172 LQGPR--KGPTLPQGPTLPQGPT 192
             G    +G     G   P G  
Sbjct: 492 EAGKPGEQGVPGDLGAPGPSGAR 514

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 37/145 (25%), Positives = 44/145 (30%), Gaps = 2/145 (1%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            G     G     G     GP  +QGP  P G    +G      P+   GP   +G    
Sbjct: 271 SGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGS 330

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
           +G     G   P+GP   +G     GP    G     G   L G     G     GP   
Sbjct: 331 RGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGK 390

Query: 173 QGPR--KGPTLPQGPTLPQGPTLPQ 195
            GP    G     GP  P G     
Sbjct: 391 TGPPGPAGEDGRPGPAGPPGARGQA 415

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 40/161 (24%), Positives = 51/161 (31%), Gaps = 2/161 (1%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             G     GP   +G    QG     GP  P G   P G          +G     G   
Sbjct: 186 AVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAG 245

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             G    +GP+ P+GP+   GP    G     G     G     GP   QGP    G   
Sbjct: 246 APGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEG 305

Query: 172 LQGPR--KGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
            +G R   GP+   GP   +G    +           +GP 
Sbjct: 306 KRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPA 346

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 37/142 (26%), Positives = 46/142 (32%), Gaps = 2/142 (1%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            GPT   G     G     GP   +G   PQG     GP        P G     G    
Sbjct: 175 TGPTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGA 234

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
           +G     G     G    +GP+  +GP+   GP    G     G     G     GP  +
Sbjct: 235 KGANGAPGIAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGV 294

Query: 173 QGPR--KGPTLPQGPTLPQGPT 192
           QGP    G    +G     GP+
Sbjct: 295 QGPPGPAGEEGKRGARGEPGPS 316

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 42/161 (26%), Positives = 49/161 (30%), Gaps = 2/161 (1%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             GP    G     G     G     GP   QGP  P G    +      GP+ L GP  
Sbjct: 264 APGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPG 323

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
            +G    +G     G   P+GP   +G     GP    G     G     G   L G   
Sbjct: 324 ERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPG 383

Query: 172 LQGPR--KGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
             GP    GP  P G     GP  P             GP+
Sbjct: 384 SPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPK 424

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 37/143 (25%), Positives = 47/143 (32%), Gaps = 2/143 (1%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             G     G   P+G    +G     GP   +G     G      PT P GP    G   
Sbjct: 129 SPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVG 188

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
            +G   P+G    +GP   +G     GP    GP    G     G     G   + G   
Sbjct: 189 AKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPG 248

Query: 172 LQGPR--KGPTLPQGPTLPQGPT 192
             G R   GP  P G   P+G +
Sbjct: 249 FPGARGPSGPEGPSGAPGPKGNS 271

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 41/140 (29%), Positives = 47/140 (33%), Gaps = 1/140 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
                + GP  P GP  L GP    GP   QGP    G      P  P+GP    G    
Sbjct: 10  STGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGD 69

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            G     G    +GP  PQG   L G   L G    +G + L G     GP   +G    
Sbjct: 70  DGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGS 129

Query: 173 QGPRKGPTLPQGPTLPQGPT 192
            G   G     GP    G  
Sbjct: 130 PGE-NGAPGQMGPRGLPGER 148

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 38/158 (24%), Positives = 49/158 (31%), Gaps = 1/158 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            G    QG     G     G    +G    +G   P GP   +      G    +G    
Sbjct: 493 AGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGA 552

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            G    QG    QG    +G   L GP   +G    +G     G    +G T   GP   
Sbjct: 553 PGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGP 612

Query: 173 QGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
            G   G     GP+ P GPT  +     +      GP 
Sbjct: 613 AGA-PGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPA 649

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 43/159 (27%), Positives = 48/159 (30%), Gaps = 1/159 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             G    +G   P GP    G     G     GP  P G           G     G   
Sbjct: 612 PAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAG 671

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
            +G   P GP  P GP  P G     GP   +G     G T   G     GP    G   
Sbjct: 672 AKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAG 731

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
             GP  GP   +G   P+G T P        P    GP 
Sbjct: 732 PPGP-PGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPA 769

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 38/140 (27%), Positives = 46/140 (32%), Gaps = 1/140 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
           +G     GP  P+G     G    +G     G    QG   LQ     +G   L GP   
Sbjct: 523 RGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGD 582

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
           +G   P+G     G    +G T   GP    G    +G     GP  P G     G    
Sbjct: 583 RGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGE 642

Query: 173 QGPRKGPTLPQGPTLPQGPT 192
            GP  GP    GP    G  
Sbjct: 643 PGP-PGPAGFAGPPGADGQP 661

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 37/140 (26%), Positives = 47/140 (33%), Gaps = 1/140 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
           +G    +G   P GP   +G     G    +G     G    Q     QG    +G    
Sbjct: 517 RGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGL 576

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            GP   +G   P+G     G   ++G T   GP    G    +G   P GP    G    
Sbjct: 577 PGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGA 636

Query: 173 QGPRKGPTLPQGPTLPQGPT 192
            G R G   P GP    GP 
Sbjct: 637 PGDR-GEPGPPGPAGFAGPP 655

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 42/161 (26%), Positives = 51/161 (31%), Gaps = 2/161 (1%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
           + GP    GP    GP    GP   QGP    G     GP   + P  P G     G   
Sbjct: 15  VPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAG 74

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             G    +GP  PQG     G   L G    +G + L G     GP  P+G     G   
Sbjct: 75  KPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENG 134

Query: 172 LQGPR--KGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
             G    +G    +G     GP   +            GP 
Sbjct: 135 APGQMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPT 175

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 37/160 (23%), Positives = 44/160 (27%), Gaps = 2/160 (1%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            G    +G   P G     G     G   P GP  P G    Q P    G   L GP  P
Sbjct: 430 PGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGP 489

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            G     G     G     GP+  +G     G   ++GP    GP    G     G    
Sbjct: 490 PGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGD 549

Query: 173 QGPR--KGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
            G     G     G     G          +      GP+
Sbjct: 550 AGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPK 589

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 39/158 (24%), Positives = 51/158 (32%), Gaps = 1/158 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
           +G     G     G    +GP+  +GP+   GP    G           G     GP   
Sbjct: 235 KGANGAPGIAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGV 294

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
           QGP  P G    +G     GP+ L GP   +G    +G     G   P+GP   +G    
Sbjct: 295 QGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGP 354

Query: 173 QGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
            GP KG     G     G    +  T         G  
Sbjct: 355 AGP-KGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKT 391

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 38/149 (25%), Positives = 46/149 (30%), Gaps = 2/149 (1%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
           + G     GP+  +G     G   ++GP  P GP    G           G     G   
Sbjct: 501 VPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQG 560

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             G     G     G   P+G     GP    G     G   L GP  P GP    G   
Sbjct: 561 APGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKG 620

Query: 172 LQGPR--KGPTLPQGPTLPQGPTLPQDPT 198
             GP    GPT  +G    +G   P  P 
Sbjct: 621 EAGPSGPAGPTGARGAPGDRGEPGPPGPA 649

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 38/141 (26%), Positives = 44/141 (31%), Gaps = 1/141 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             G   ++GP  P GP    G     G     G     G           G     G   
Sbjct: 519 FPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPG 578

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
           P+G     GP    G     G   L GP    GP    G     GP+ P GPT  +G   
Sbjct: 579 PKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPG 638

Query: 172 LQGPRKGPTLPQGPTLPQGPT 192
            +G   GP  P G   P G  
Sbjct: 639 DRGE-PGPPGPAGFAGPPGAD 658

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 33/143 (23%), Positives = 41/143 (28%), Gaps = 2/143 (1%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
           ++GP    GP    G     G     G     G     G   +       G    +G   
Sbjct: 525 VEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRG 584

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             GP    G     G     GP    GP    G     GP+   GPT  +G    +G   
Sbjct: 585 DAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPG 644

Query: 172 LQGPR--KGPTLPQGPTLPQGPT 192
             GP    GP    G    +G  
Sbjct: 645 PPGPAGFAGPPGADGQPGAKGEP 667

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 36/143 (25%), Positives = 45/143 (31%), Gaps = 2/143 (1%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             G     G     GP   +G    QG     GP  P G           G    +G   
Sbjct: 180 PPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANG 239

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             G     G    +GP+ P+GP+   GP    G     G     G     GP  +QGP  
Sbjct: 240 APGIAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPG 299

Query: 172 LQGPR--KGPTLPQGPTLPQGPT 192
             G    +G     GP+   GP 
Sbjct: 300 PAGEEGKRGARGEPGPSGLPGPP 322

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 38/142 (26%), Positives = 46/142 (32%), Gaps = 2/142 (1%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            GP    GPT P G     G     GP   +G   PQG      P  P G     G    
Sbjct: 169 AGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGA 228

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            G    +G     G     G    +GP+  +GP+   GP    G     G     G    
Sbjct: 229 DGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGE 288

Query: 173 QGPR--KGPTLPQGPTLPQGPT 192
            GP   +GP  P G    +G  
Sbjct: 289 PGPAGVQGPPGPAGEEGKRGAR 310

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 41/159 (25%), Positives = 49/159 (30%), Gaps = 1/159 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             GP   +G   P G    QG     GP    G    QG         P G    +G   
Sbjct: 462 PAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPG 521

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
            +G   P GP  P+G     G    +G     G    QG   LQG    +G   L GP  
Sbjct: 522 ERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKG 581

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
            +G   GP    G     G      P     P    G +
Sbjct: 582 DRGD-AGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDK 619

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 34/159 (21%), Positives = 42/159 (26%), Gaps = 1/159 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             G     G     G     GP    G    QGP    G   L  P  P G     G   
Sbjct: 441 PPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQG 500

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             G     GP+  +G     G   ++GP    GP    G     G     G     G   
Sbjct: 501 VPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQG 560

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
             G  +G    +G     GP   +     +      G  
Sbjct: 561 APGL-QGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKD 598

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 39/161 (24%), Positives = 49/161 (30%), Gaps = 2/161 (1%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             G    +GP+ P+GP+   GP    G     G     G      P   QGP    G   
Sbjct: 246 APGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEG 305

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
            +G     GP+   GP   +G    +G     G    +GP   +G   P GP    G   
Sbjct: 306 KRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAG 365

Query: 172 LQGPR--KGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
             G     G     G     GP     P          GP 
Sbjct: 366 RPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPA 406

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 39/157 (24%), Positives = 51/157 (32%), Gaps = 1/157 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            GP    G    QG     G     G    +G    +G      P  P+G     G    
Sbjct: 487 AGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGA 546

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
           +G     G    QG    QG    +G   L GP   +G    +G     G   ++G T  
Sbjct: 547 KGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGP 606

Query: 173 QGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGP 209
            GP  GP    G     GP+ P  PT  +     +G 
Sbjct: 607 IGP-PGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGE 642

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 30/127 (23%), Positives = 37/127 (29%)

Query: 52   LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             QGP   +G T  +G   ++G     G   P GP    G       + P GP    G   
Sbjct: 927  PQGPRGDKGETGEEGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAG 986

Query: 112  PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
              G     G   P GP  P+G T   GP    GP    GP                    
Sbjct: 987  SPGKDGLNGLPGPIGPPGPRGRTGDAGPAGPPGPPGPPGPPGPPSGGYDLSFLPQPPQQK 1046

Query: 172  LQGPRKG 178
                 + 
Sbjct: 1047 AHDKGRY 1053

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 39/157 (24%), Positives = 52/157 (33%), Gaps = 1/157 (0%)

Query: 54  GPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQ 113
           G    +G     G     G    +GP+ P+GP+   GP          G     G     
Sbjct: 230 GQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEP 289

Query: 114 GPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLLQ 173
           GP   QGP  P G    +G     GP+ L GP   +G    +G     G    +GP   +
Sbjct: 290 GPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGER 349

Query: 174 GPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
           G   GP  P+G     G          +  T   G  
Sbjct: 350 GS-PGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSP 385

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 38/159 (23%), Positives = 48/159 (30%), Gaps = 1/159 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             GP   +G     G     GPT   GP    G    +G    +     +GP  ++G   
Sbjct: 153 APGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPG 212

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
           P GP    GP    G     G     G   + G     G     GP  P G    +G + 
Sbjct: 213 PPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSGAPGPKGNSG 272

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
             G   G     G     GP   Q P         +G R
Sbjct: 273 EPGA-PGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGAR 310

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 33/158 (20%), Positives = 44/158 (27%), Gaps = 1/158 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
           +        +         GP+  +G   P G   PQG           G +   GP  P
Sbjct: 1   EMSYGYDEKSTGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGP 60

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            GP    G     G     G     GP   +G     G   ++G     G    +G    
Sbjct: 61  PGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGP 120

Query: 173 QGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
            GP KG     G     G   P+     +      GP 
Sbjct: 121 AGP-KGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPA 157

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 38/160 (23%), Positives = 47/160 (29%), Gaps = 2/160 (1%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             G     G     G     GP    G    +G     G         P GP    G   
Sbjct: 833 NPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLG 892

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
            +G   P G   P G   P+GP+  QG     G    +G   ++G     G   L G   
Sbjct: 893 NRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDDGEPGDKGDKGIKGDRGHNGLQGLPGLAG 952

Query: 172 LQGPR--KGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGP 209
             G +   G   P GP  P GP+ P             G 
Sbjct: 953 HHGDQGAPGAVGPAGPRGPAGPSGPAGKIGRIGAVGPAGA 992

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 52.8 bits (127), Expect = 6e-08
 Identities = 38/144 (26%), Positives = 44/144 (30%), Gaps = 1/144 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
           L G     G   P G     G     GP  P G   P G      P    GP    GP  
Sbjct: 137 LPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAG 196

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
           P GP    G     GP  P G     G    +G   L G     G   P+G     G   
Sbjct: 197 PAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAG 256

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQ 195
             G  +G     GP   +G +  +
Sbjct: 257 ATGA-RGLVGEPGPAGSKGESGNK 279

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 52.8 bits (127), Expect = 7e-08
 Identities = 41/158 (25%), Positives = 49/158 (31%), Gaps = 1/158 (0%)

Query: 53   QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
             G     GP    G    +G     G   P G   P GP         +G     G   P
Sbjct: 846  DGNPGNDGPPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGP 905

Query: 113  QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
             G   P+GP+ PQG     G    +G   ++G     G   L G     G     G    
Sbjct: 906  AGAVGPRGPSGPQGIRGDDGEPGDKGDKGIKGDRGHNGLQGLPGLAGHHGDQGAPGAVGP 965

Query: 173  QGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
             GPR GP  P GP    G      P         QG +
Sbjct: 966  AGPR-GPAGPSGPAGKIGRIGAVGPAGAAGIRGSQGSQ 1002

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 52.4 bits (126), Expect = 8e-08
 Identities = 37/140 (26%), Positives = 44/140 (31%), Gaps = 1/140 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            G   L G    +G   L G T   G    +G     G          +G    +G    
Sbjct: 87  PGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKGARGLPGERGRVGA 146

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            GP   +G     GP  P GP    GP    G    +G     G   P GP   +G   L
Sbjct: 147 PGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGL 206

Query: 173 QGPRKGPTLPQGPTLPQGPT 192
            G   GP  P G   P G  
Sbjct: 207 PGL-SGPVGPPGNAGPNGLP 225

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 52.4 bits (126), Expect = 8e-08
 Identities = 35/159 (22%), Positives = 41/159 (25%), Gaps = 1/159 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             GP    G     G     G   + GP   +G     G    +      G   L G   
Sbjct: 53  PPGPPGKAGEDGHPGKPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPG 112

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             G     G     G    +G   L G     G     G     G   P GP    G   
Sbjct: 113 APGVKGEPGAPGENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAG 172

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
             G   G   P+G   P G   P  P   +    L G  
Sbjct: 173 PPGF-PGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLS 210

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 52.0 bits (125), Expect = 9e-08
 Identities = 34/140 (24%), Positives = 43/140 (30%), Gaps = 1/140 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
           +G    QG     G   L G   ++G     G T   G   ++      G     G    
Sbjct: 75  RGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKGA 134

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
           +G    +G     GP   +G     GP    GP    GP    G   P+G     G    
Sbjct: 135 RGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGP 194

Query: 173 QGPRKGPTLPQGPTLPQGPT 192
            GP  GP    G     GP 
Sbjct: 195 AGP-AGPRGEVGLPGLSGPV 213

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 36/140 (25%), Positives = 40/140 (28%), Gaps = 1/140 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
           +G   L G     G     G     G   P GP  P G           GP    GP   
Sbjct: 132 KGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGN 191

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            GP  P GP    G     GP    G     G    +G   L G     G    +G    
Sbjct: 192 PGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGP 251

Query: 173 QGPRKGPTLPQGPTLPQGPT 192
            G   G T  +G     GP 
Sbjct: 252 VGA-AGATGARGLVGEPGPA 270

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 49/160 (30%), Positives = 57/160 (35%), Gaps = 2/160 (1%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
           QGP   QGP    GP    G     GP    GPT   G       T P GP+ L GP  P
Sbjct: 669 QGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGP 728

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            G    +G   P+G   P G +   G T   G    +GPT   G   P GP   QG    
Sbjct: 729 PGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGA 788

Query: 173 QGPR--KGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
            G     G    +G     G      P  +  P   +GP 
Sbjct: 789 PGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPP 828

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 42/158 (26%), Positives = 49/158 (31%), Gaps = 1/158 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            GP    GPT   G     G T   GP+   GP  P G    +    P+G     G +  
Sbjct: 693 AGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGE 752

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            G T P G    +GPT   G     GP   QG     G   L G    +G   + G    
Sbjct: 753 TGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGE 812

Query: 173 QGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
            GP  G   P G   P G                 G  
Sbjct: 813 PGP-LGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNP 849

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 40/141 (28%), Positives = 50/141 (35%), Gaps = 1/141 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
           + G     G T P GP+ L GP    G    +G   P+G       +   G T   G   
Sbjct: 704 MTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVG 763

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
            +GPT   G   P GP  PQG     G   L G    +G   + G     GP  + GP  
Sbjct: 764 EKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPG 823

Query: 172 LQGPRKGPTLPQGPTLPQGPT 192
            +GP  G     G     G  
Sbjct: 824 ARGP-PGNVGNPGVNGAPGEA 843

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 41/161 (25%), Positives = 50/161 (31%), Gaps = 2/161 (1%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             GP  L+G    +G     G   + GP   +G + P G       +   G   L GP  
Sbjct: 311 PPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRG 370

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             G     GP   +GP    G     GP    GP    G     GP  P G     G   
Sbjct: 371 FPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKG 430

Query: 172 LQGPR--KGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
             G    +G   P G    QGP   Q     +      GP 
Sbjct: 431 NVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPP 471

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 47/161 (29%), Positives = 53/161 (32%), Gaps = 2/161 (1%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
            +G     G   P+GPT   G    +G     G     GP        P G   +QG   
Sbjct: 404 PRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKG 463

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
            QGP  P G     GP  P G     G   L G   L GP   +G   P G     GPT 
Sbjct: 464 EQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTG 523

Query: 172 LQGPR--KGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
             G R   GP  P G     G   P        P  + G R
Sbjct: 524 PIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPGER 564

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 36/142 (25%), Positives = 39/142 (27%), Gaps = 2/142 (1%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            G     G    +G   L G     G   P G     G      P  P G     G    
Sbjct: 120 PGAPGENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGA 179

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            GP    GP    GP  P GP    G   L GP    G     G    +G   L G    
Sbjct: 180 PGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGA 239

Query: 173 QGPR--KGPTLPQGPTLPQGPT 192
            G    +G   P G     G  
Sbjct: 240 PGLPGPRGIPGPVGAAGATGAR 261

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 38/147 (25%), Positives = 47/147 (31%), Gaps = 1/147 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             GP   +G     GP    GP    G    +G     G    +     +G T   G   
Sbjct: 533 PPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPGLRGDTGATGRDG 592

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
            +G     G   P G    +G     GP    G   ++G     GP  P G     G   
Sbjct: 593 ARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAG 652

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPT 198
             G  KG    +GP   QGP  PQ P 
Sbjct: 653 QPGA-KGERGTKGPVGEQGPVGPQGPV 678

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 41/160 (25%), Positives = 50/160 (31%), Gaps = 2/160 (1%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
           +G     G     G   L G     G     G     G      P  P G    +G T  
Sbjct: 246 RGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGE 305

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            GP  P GP   +G    +G     G   + GP   +G +   G   P G +   G   L
Sbjct: 306 IGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGL 365

Query: 173 QGPR--KGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
            GPR   G     GP   +GP           P    GPR
Sbjct: 366 MGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPR 405

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 36/140 (25%), Positives = 42/140 (30%), Gaps = 1/140 (0%)

Query: 53   QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
             G     G   P GP    G    +G   P G   P G    + P+ PQG     G    
Sbjct: 870  PGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDDGEPGD 929

Query: 113  QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            +G    +G     G     G     G     G     GP    GP+ P G     G    
Sbjct: 930  KGDKGIKGDRGHNGLQGLPGLAGHHGDQGAPGAVGPAGPRGPAGPSGPAGKIGRIGAVGP 989

Query: 173  QGPRKGPTLPQGPTLPQGPT 192
             G   G    QG   P GP 
Sbjct: 990  AGA-AGIRGSQGSQGPAGPP 1008

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 38/159 (23%), Positives = 46/159 (28%), Gaps = 4/159 (2%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             G     G    +G    QG     G     G    +G   L   T   G   ++G   
Sbjct: 62  EDGHPGKPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPG 121

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             G     G    +G    +G     GP    G     G     GP  P G     G   
Sbjct: 122 APGENGTPGQKGARGLPGERGRVGAPGP---AGARGSDGSVGPVGPAGPIGSAGPPGFPG 178

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
             GP KG   P G   P GP  P+    L   +   GP 
Sbjct: 179 APGP-KGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPP 216

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 45/143 (31%), Positives = 52/143 (36%), Gaps = 2/143 (1%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             GP    G    +G    +GP   QGP  PQGP    GP        P GP    GPT 
Sbjct: 644 FAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTG 703

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             G     G T P GP+   GP    G    +G    +G     G +   G T   G   
Sbjct: 704 MTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVG 763

Query: 172 LQGPR--KGPTLPQGPTLPQGPT 192
            +GP    G   P GP  PQG  
Sbjct: 764 EKGPTGEPGSAGPPGPPGPQGLL 786

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 50/148 (33%), Positives = 57/148 (38%), Gaps = 2/148 (1%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            GP+   GP    G    +G    +GP   QGP  PQGP     P  P G     GP   
Sbjct: 639 VGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGD 698

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            GPT   G     G T P GP+ L GP    G    +G    +G   P G +   G T  
Sbjct: 699 AGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGP 758

Query: 173 QGPR--KGPTLPQGPTLPQGPTLPQDPT 198
            G    KGPT   G   P GP  PQ   
Sbjct: 759 TGFVGEKGPTGEPGSAGPPGPPGPQGLL 786

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 41/142 (28%), Positives = 46/142 (32%), Gaps = 2/142 (1%)

Query: 53   QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
             GP    GP  P G     G     GP    GP    GP     P   +G     G    
Sbjct: 873  AGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDDGEPGDKGD 932

Query: 113  QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            +G    +G    QG     G    QG     GP   +GP    GP    G     GP   
Sbjct: 933  KGIKGDRGHNGLQGLPGLAGHHGDQGAPGAVGPAGPRGPAGPSGPAGKIGRIGAVGPAGA 992

Query: 173  QGPR--KGPTLPQGPTLPQGPT 192
             G R  +G   P GP  P GP 
Sbjct: 993  AGIRGSQGSQGPAGPPGPPGPP 1014

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 38/141 (26%), Positives = 50/141 (35%), Gaps = 2/141 (1%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
           +GP   +G   P GP   +GP+   GP   +G     GP     P  P G    +G    
Sbjct: 510 RGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGV 569

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            G    +G    +G T   G    +G     G     G    +G   P GP    G   +
Sbjct: 570 PGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGI 629

Query: 173 QGPR--KGPTLPQGPTLPQGP 191
           +G R   GP  P G   P G 
Sbjct: 630 RGERGEPGPVGPSGFAGPAGA 650

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 38/158 (24%), Positives = 47/158 (29%), Gaps = 1/158 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             G   ++G     G     G    +G    +G     GP   +      GP    GP  
Sbjct: 110 QPGAPGVKGEPGAPGENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIG 169

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             GP    G   P+G   P G     GP   +G   L G +   GP    GP  L G   
Sbjct: 170 SAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKG 229

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGP 209
             G   G     G   P+G   P           L G 
Sbjct: 230 AAGL-PGVAGAPGLPGPRGIPGPVGAAGATGARGLVGE 266

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 50/159 (31%), Positives = 58/159 (36%), Gaps = 1/159 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             GP    G     GP    GP   +G    +G   P GP+    P    G    +G   
Sbjct: 602 APGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERG 661

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
            +GP   QGP  PQGP    GP    G     GP    GPT + G     G T   GP+ 
Sbjct: 662 TKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSG 721

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
           L GP  GP    G    +GP   Q P      T   GP 
Sbjct: 722 LTGP-PGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPT 759

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 42/143 (29%), Positives = 49/143 (34%), Gaps = 2/143 (1%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
           + GP   +G + P G     G +   G     GP    G      P   +GP  L G   
Sbjct: 335 VMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDG 394

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             GP  P GP    G     GP    G     G     G    +G   P G    QGP  
Sbjct: 395 RPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPG 454

Query: 172 LQGPR--KGPTLPQGPTLPQGPT 192
           LQG +  KG   P GP   QG  
Sbjct: 455 LQGVQGEKGEQGPAGPPGFQGLP 477

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 42/140 (30%), Positives = 51/140 (36%), Gaps = 1/140 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            G     GP  P G    +G T   GP  P GP   +G    +      G   + GP   
Sbjct: 282 PGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGS 341

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
           +G + P G   P G +   G   L GP    G     GP   +GP    G     GP   
Sbjct: 342 RGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGP 401

Query: 173 QGPRKGPTLPQGPTLPQGPT 192
            GPR G     G   P+GPT
Sbjct: 402 AGPR-GEAGAIGFPGPKGPT 420

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 48/159 (30%), Positives = 54/159 (33%), Gaps = 1/159 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
           L G     GP    G     GP    GP   +G    +G      P+   GP    G   
Sbjct: 596 LPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPG 655

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
            +G    +GP   QGP  PQGP    GP    G     GP    GPT   G     G T 
Sbjct: 656 AKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTG 715

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
             GP  G T P GP    G    + P   Q P    G  
Sbjct: 716 PPGP-SGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGET 753

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 43/146 (29%), Positives = 52/146 (35%), Gaps = 1/146 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            G     G     GP    G    +G T   GP  P GP  L+     +G     G    
Sbjct: 276 SGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGV 335

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            GP   +G + P G   P G +   G   L GP    G     GP   +GP  L G    
Sbjct: 336 MGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGR 395

Query: 173 QGPRKGPTLPQGPTLPQGPTLPQDPT 198
            GP  GP  P+G     G   P+ PT
Sbjct: 396 PGP-IGPAGPRGEAGAIGFPGPKGPT 420

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 41/142 (28%), Positives = 46/142 (32%), Gaps = 2/142 (1%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            G   + G   P GP   +G     G   P+GPT   G    +      G     GP   
Sbjct: 387 VGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGN 446

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            G   P G    QG    QGP    G   L GP    G     G     G   L GP   
Sbjct: 447 NGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGA 506

Query: 173 QGPR--KGPTLPQGPTLPQGPT 192
           +G R   G     GPT P G  
Sbjct: 507 RGERGPPGERGAAGPTGPIGSR 528

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 39/141 (27%), Positives = 43/141 (30%), Gaps = 1/141 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             GP    G   P G   +QG    QGP  P G     GP          G   L G   
Sbjct: 440 APGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFG 499

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             GP   +G   P G     GPT   G     GP    G     G   P G     GP  
Sbjct: 500 LPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPG 559

Query: 172 LQGPRKGPTLPQGPTLPQGPT 192
           + G R G     G    +G  
Sbjct: 560 IPGER-GVAGVPGGKGEKGAP 579

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 45/161 (27%), Positives = 55/161 (34%), Gaps = 2/161 (1%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
            +G    +GP   QGP   QGP    GP  P G   P GP     PT   G     G T 
Sbjct: 656 AKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTG 715

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
           P GP+   GP  P G    +G    +G     G +   G T   G    +GPT   G   
Sbjct: 716 PPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAG 775

Query: 172 LQGPR--KGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
             GP   +G     G     G    +    +       GP 
Sbjct: 776 PPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPL 816

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 39/159 (24%), Positives = 47/159 (29%), Gaps = 1/159 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             GP   +GP  P G     G     G    +G   PQG           G   ++G   
Sbjct: 44  QTGPAGARGPPGPPGKAGEDGHPGKPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNG 103

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             G T   G    +G     G     G    +G    +G     GP   +G     GP  
Sbjct: 104 LDGLTGQPGAPGVKGEPGAPGENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVG 163

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
             GP  G   P G     GP     P     P    GPR
Sbjct: 164 PAGP-IGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPR 201

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 44/159 (27%), Positives = 51/159 (32%), Gaps = 1/159 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
           L GP    G     G   L G   L GP   +G   P G      PT P G     GP  
Sbjct: 476 LPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPG 535

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
           P G     G   P G   P GP  + G   + G    +G     G     G T   G   
Sbjct: 536 PDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPGLRGDTGATGRDGARG 595

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
           L G   G   P G    +G   P  P        ++G R
Sbjct: 596 LPGA-IGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGER 633

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 36/159 (22%), Positives = 44/159 (27%), Gaps = 1/159 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
           L G    +G     G     GP  + GP   +GP    G   +       G     G   
Sbjct: 794 LPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDG 853

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
           P G     G    +G     GP    GP    G     G     GP    GP    GP  
Sbjct: 854 PPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAGAVGPRG 913

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
             GP +G     G    +G    +          L G  
Sbjct: 914 PSGP-QGIRGDDGEPGDKGDKGIKGDRGHNGLQGLPGLA 951

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 43/160 (26%), Positives = 52/160 (32%), Gaps = 2/160 (1%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
           +G T   GP  P GP  L+G    +G     G     GP   +  + P G     G +  
Sbjct: 300 RGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGR 359

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            G     GP    G     GP   +GP  L G     GP    GP    G     GP   
Sbjct: 360 PGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGP 419

Query: 173 QGPR--KGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
            G     G     G    +G   P      Q P  LQG +
Sbjct: 420 TGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQ 459

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 45/169 (26%), Positives = 49/169 (28%), Gaps = 11/169 (6%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            G   L GP    G     GP   +GP    G     GP     P    G     GP  P
Sbjct: 360 PGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGP 419

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            G     G     G    +G     G    QGP  LQG    +G   P GP   QG    
Sbjct: 420 TGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGP 479

Query: 173 QGPR-----------KGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
            GP             G     GP   +G   P        PT   G R
Sbjct: 480 AGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSR 528

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 43/158 (27%), Positives = 48/158 (30%), Gaps = 1/158 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            G +   G     GP    G     GP   +GP    G      P  P GP    G    
Sbjct: 354 NGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGF 413

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            GP  P G     G     G    +G     G    QGP  LQG    +G     GP   
Sbjct: 414 PGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGF 473

Query: 173 QGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
           QG   GP  P G     G         L  P   +G R
Sbjct: 474 QGL-PGPAGPAGEAGKPGERGLHGEFGLPGPAGARGER 510

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 34/141 (24%), Positives = 47/141 (33%), Gaps = 1/141 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
            +G     GP   +GP+   GP   +G     GP    GP         +G   + G   
Sbjct: 515 ERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKG 574

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
            +G    +G T   G    +G     G     G    +G     GP  P G   ++G   
Sbjct: 575 EKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGERG 634

Query: 172 LQGPRKGPTLPQGPTLPQGPT 192
             GP  GP+   GP    G  
Sbjct: 635 EPGP-VGPSGFAGPAGAAGQP 654

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 37/160 (23%), Positives = 47/160 (29%), Gaps = 2/160 (1%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
           +G    +G   P G +   G T   G    +GPT   G      P  PQG     G    
Sbjct: 735 EGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGL 794

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            G    +G     G     GP  + GP   +GP    G   + G     G     G    
Sbjct: 795 PGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGP 854

Query: 173 QGP--RKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
            G   + G    +G     GP     P          G R
Sbjct: 855 PGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLGNR 894

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 38/140 (27%), Positives = 42/140 (30%), Gaps = 1/140 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            G   L GP  P G     G   L G     GP   +G           GPT   G   P
Sbjct: 471 PGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRGP 530

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            GP  P G     G   P G     GP  + G   + G    +G     G     G T  
Sbjct: 531 SGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPGLRGDTGATGR 590

Query: 173 QGPRKGPTLPQGPTLPQGPT 192
            G R G     G   P G  
Sbjct: 591 DGAR-GLPGAIGAPGPAGGA 609

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 39/140 (27%), Positives = 43/140 (30%), Gaps = 1/140 (0%)

Query: 52   LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
              G     G     GP    GP    GP  P GP   +G          +G    +G   
Sbjct: 884  PVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDDGEPGDKGDKGIKGDRGHNG 943

Query: 112  PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             QG     G    QG     GP   +GP    GP    G     GP    G    QG   
Sbjct: 944  LQGLPGLAGHHGDQGAPGAVGPAGPRGPAGPSGPAGKIGRIGAVGPAGAAGIRGSQGSQG 1003

Query: 172  LQGPRKGPTLPQGPTLPQGP 191
              GP  GP  P GP  P   
Sbjct: 1004 PAGP-PGPPGPPGPPGPPSG 1022

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 40/160 (25%), Positives = 50/160 (31%), Gaps = 2/160 (1%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            GP    GP   +G    +G     G     GP   +G +       P G +   G    
Sbjct: 306 IGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGL 365

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            GP    G     GP   +GP  L G     GP    GP    G     GP    G    
Sbjct: 366 MGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGK 425

Query: 173 QGPR--KGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
            G +   G    +G   P G    Q P  LQ     +G +
Sbjct: 426 PGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQ 465

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 40/158 (25%), Positives = 42/158 (26%), Gaps = 1/158 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            G T   GPT   G     G     GP  P GP    G          +G   L G    
Sbjct: 750 SGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGS 809

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            G   P G   P G   P G     G     G     G     GP    G    +G    
Sbjct: 810 VGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGT 869

Query: 173 QGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
            G   GP    GP  P G            P    GP 
Sbjct: 870 PGNA-GPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPA 906

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 34/143 (23%), Positives = 37/143 (25%), Gaps = 2/143 (1%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
            +G     G     G     G     G     G    +G   L       G     G   
Sbjct: 95  FKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKGARGLPGERGRVGAPGPAGARG 154

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             G   P GP  P G   P G     GP    GP    GP    GP    G   L GP  
Sbjct: 155 SDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVG 214

Query: 172 LQGPR--KGPTLPQGPTLPQGPT 192
             G     G    +G     G  
Sbjct: 215 PPGNAGPNGLPGAKGAAGLPGVA 237

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 38/158 (24%), Positives = 46/158 (29%), Gaps = 1/158 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
            QGP    G     GP   +GP    G     G     G    +    PQG     G   
Sbjct: 32  FQGPPGEPGEPGQTGPAGARGPPGPPGKAGEDGHPGKPGRPGERGVPGPQGARGFPGTPG 91

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             G    +G     G T   G   ++G     G     G    +G    +G     GP  
Sbjct: 92  LPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKGARGLPGERGRVGAPGPAG 151

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGP 209
            +G   G   P GP  P G   P        P    GP
Sbjct: 152 ARGS-DGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGP 188

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 41/158 (25%), Positives = 43/158 (27%), Gaps = 1/158 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
           QGP    G T   GPT   G     G     GP  P GP  L       G    +G    
Sbjct: 744 QGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGL 803

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            G     G   P G   P G     G     G     G     G     GP    G    
Sbjct: 804 PGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGH 863

Query: 173 QGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
           +G R G     GP    GP  P             GP 
Sbjct: 864 KGER-GTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPA 900

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 42/158 (26%), Positives = 48/158 (30%), Gaps = 1/158 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            GP  L GP  P G +   GP   QGP    G     GP   + P  P G     G    
Sbjct: 9   PGPMGLMGPRGPPGASGAPGPQGFQGPPGEPGEPGQTGPAGARGPPGPPGKAGEDGHPGK 68

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            G    +G   PQG     G   L G   ++G   L G T   G    +G     G    
Sbjct: 69  PGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGT 128

Query: 173 QGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
            G  KG     G     G   P             GP 
Sbjct: 129 PGQ-KGARGLPGERGRVGAPGPAGARGSDGSVGPVGPA 165

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 44/143 (30%), Positives = 49/143 (34%), Gaps = 2/143 (1%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
           + G     GP  P+G     G    +GPT   G    +G   L       GP    G   
Sbjct: 392 IDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQG 451

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
           P G    QG    QGP  P G   L GP    G     G   L G     GP   +G   
Sbjct: 452 PPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERG 511

Query: 172 LQGPR--KGPTLPQGPTLPQGPT 192
             G R   GPT P G   P GP 
Sbjct: 512 PPGERGAAGPTGPIGSRGPSGPP 534

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 32/143 (22%), Positives = 37/143 (25%), Gaps = 2/143 (1%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
           L G     G    +G   L G     G   P G   P G           G     G   
Sbjct: 785 LLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAG 844

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             G     GP    G    +G     G     G     GP    G    +G     G   
Sbjct: 845 RDGNPGNDGPPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVG 904

Query: 172 LQGPR--KGPTLPQGPTLPQGPT 192
             G    +GP+ PQG     G  
Sbjct: 905 PAGAVGPRGPSGPQGIRGDDGEP 927

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 37/141 (26%), Positives = 40/141 (28%), Gaps = 1/141 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             GP    GP    GP    GP    G     GP  P G          +G   L G   
Sbjct: 179 APGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAG 238

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             G   P+G   P G     G   L G     G     G     G     GP    G   
Sbjct: 239 APGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEG 298

Query: 172 LQGPRKGPTLPQGPTLPQGPT 192
            +G   G   P GP  P G  
Sbjct: 299 KRGS-TGEIGPAGPPGPPGLR 318

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 39/147 (26%), Positives = 45/147 (30%), Gaps = 1/147 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
           +QG    QGP  P G   L GP    G     G     G   L  P   +G     G   
Sbjct: 458 VQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERG 517

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             GPT P G   P GP  P G     G     G     GP  + G     G    +G   
Sbjct: 518 AAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKGEKG 577

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPT 198
             G  +G T   G    +G        
Sbjct: 578 APGL-RGDTGATGRDGARGLPGAIGAP 603

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 38/159 (23%), Positives = 49/159 (30%), Gaps = 1/159 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
            +G     GP   +G +  +G     G   P GP+  +G         P GP    G   
Sbjct: 260 ARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRG 319

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             G     G     G   P G     GP  ++GP    G     G   P+G     G   
Sbjct: 320 NPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIG 379

Query: 172 LQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
             G  +GP    G     GP  P  P          GP+
Sbjct: 380 PAGK-EGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPK 417

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 43/158 (27%), Positives = 52/158 (32%), Gaps = 1/158 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
           +G   L+G T   G    +G     G   P G    +G      P  P G   ++G    
Sbjct: 576 KGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGERGE 635

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            GP  P G   P G     G    +G     G     GP    G   P GP    GP   
Sbjct: 636 PGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGP 695

Query: 173 QGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
           +G   GPT   G     G T P  P+ L  P    G  
Sbjct: 696 RGD-AGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAA 732

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 41/161 (25%), Positives = 49/161 (30%), Gaps = 2/161 (1%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
           L+G T   G    +G     G     G    +G   P GP         +G     GP  
Sbjct: 581 LRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVG 640

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
           P G   P G     G    +G     G     GP    G     GP    GP   +G   
Sbjct: 641 PSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAG 700

Query: 172 LQGPR--KGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
             G     G     GP  P G T P  P        ++GPR
Sbjct: 701 PTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPR 741

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 36/161 (22%), Positives = 41/161 (25%), Gaps = 2/161 (1%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             G    QG   P G     G T   G   P GP    G           G   + GP  
Sbjct: 23  ASGAPGPQGFQGPPGEPGEPGQTGPAGARGPPGPPGKAGEDGHPGKPGRPGERGVPGPQG 82

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
            +G     G    +G     G   L G     G     G     G    +G   L G   
Sbjct: 83  ARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKGARGLPGERG 142

Query: 172 LQGPR--KGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPR 210
             G     G     G   P GP  P             GP+
Sbjct: 143 RVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPK 183

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 37/160 (23%), Positives = 47/160 (29%), Gaps = 2/160 (1%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
                   GP    GP    G +   GP   QGP    G      P   +GP    G   
Sbjct: 2   FDAKGGGPGPMGLMGPRGPPGASGAPGPQGFQGPPGEPGEPGQTGPAGARGPPGPPGKAG 61

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
             G     G    +G   PQG     G   L G   ++G   L G T   G   ++G   
Sbjct: 62  EDGHPGKPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPG 121

Query: 172 LQGPR--KGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGP 209
             G     G    +G    +G      P   +      GP
Sbjct: 122 APGENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVGP 161

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 33/141 (23%), Positives = 42/141 (29%), Gaps = 1/141 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             GP    G    +G   + G    +G    +G T   G    +      G     G   
Sbjct: 551 APGPAGPPGIPGERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAG 610

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
            +G   P GP  P G    +G     GP    G     G     G    +G     G   
Sbjct: 611 DRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQG 670

Query: 172 LQGPRKGPTLPQGPTLPQGPT 192
             GP +GP    GP  P G  
Sbjct: 671 PVGP-QGPVGAAGPPGPVGAA 690

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 38/143 (26%), Positives = 48/143 (33%), Gaps = 1/143 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            GP    GP  P G    +G   + G    +G    +G T        +G     G   P
Sbjct: 546 VGPAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGP 605

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            G    +G   P GP  P G   ++G     GP    G     G     G    +G    
Sbjct: 606 AGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGP 665

Query: 173 QGPRKGPTLPQGPTLPQGPTLPQ 195
            G  +GP  PQGP    GP  P 
Sbjct: 666 VGE-QGPVGPQGPVGAAGPPGPV 687

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 36/140 (25%), Positives = 48/140 (34%), Gaps = 1/140 (0%)

Query: 53  QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
            G   + G     GP  + GP    G T  +G     GP   +  +  +G     G   P
Sbjct: 231 AGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGP 290

Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
            GP+  +G     G   P GP    G     G   L G   + G   P G     GP  +
Sbjct: 291 PGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGV 350

Query: 173 QGPRKGPTLPQGPTLPQGPT 192
           +GP  G +   G     GP 
Sbjct: 351 RGP-NGDSGRPGEPGLMGPR 369

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 41/160 (25%), Positives = 51/160 (31%), Gaps = 2/160 (1%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
            +G   L G + P GP    GP  L G     G     G   L  P    GP    G T 
Sbjct: 200 PRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATG 259

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
            +G     GP   +G +  +G     G     GP+  +G     G   P GP    G   
Sbjct: 260 ARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRG 319

Query: 172 LQGPR--KGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGP 209
             G R   G     G   P G      P  ++ P    G 
Sbjct: 320 NPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGR 359

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 37/141 (26%), Positives = 43/141 (30%), Gaps = 1/141 (0%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
             G     G   P+G     G     G   P G     G      P  P+G     G   
Sbjct: 356 DSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPG 415

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
           P+GPT   G    +G     G     GP    G     G   +QG    QGP    G   
Sbjct: 416 PKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQG 475

Query: 172 LQGPRKGPTLPQGPTLPQGPT 192
           L GP  GP    G    +G  
Sbjct: 476 LPGP-AGPAGEAGKPGERGLH 495

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 36/143 (25%), Positives = 45/143 (31%), Gaps = 2/143 (1%)

Query: 52  LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
           L GP    G    +G    +G     G +   G T P G    + PT   G     GP  
Sbjct: 722 LTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPG 781

Query: 112 PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTL 171
           PQG     G     G    +G   + G     GP  + GP   +GP    G   + G   
Sbjct: 782 PQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPG 841

Query: 172 LQGPR--KGPTLPQGPTLPQGPT 192
             G     G   P G     G  
Sbjct: 842 EAGRDGNPGNDGPPGRDGQPGHK 864

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 37/122 (30%), Positives = 42/122 (34%)

Query: 53   QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
             GP    GP  P GP  ++G     G    +G    +G   LQ      G    QG    
Sbjct: 903  VGPAGAVGPRGPSGPQGIRGDDGEPGDKGDKGIKGDRGHNGLQGLPGLAGHHGDQGAPGA 962

Query: 113  QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
             GP  P+GP  P GP    G     GP    G    QG     GP  P GP    GP   
Sbjct: 963  VGPAGPRGPAGPSGPAGKIGRIGAVGPAGAAGIRGSQGSQGPAGPPGPPGPPGPPGPPSG 1022

Query: 173  QG 174
              
Sbjct: 1023 GY 1024

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 34/117 (29%), Positives = 38/117 (32%)

Query: 52   LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL 111
              GP    GP   +G     G    +G    +G    QG   L      QG     GP  
Sbjct: 908  AVGPRGPSGPQGIRGDDGEPGDKGDKGIKGDRGHNGLQGLPGLAGHHGDQGAPGAVGPAG 967

Query: 112  PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQG 168
            P+GP  P GP    G     GP    G    QG     GP    GP  P GP     
Sbjct: 968  PRGPAGPSGPAGKIGRIGAVGPAGAAGIRGSQGSQGPAGPPGPPGPPGPPGPPSGGY 1024

>1rm1_C Transcription initiation factor IIA large chain; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} Length = 286

 Score = 44.9 bits (104), Expect = 1e-05
 Identities = 14/195 (7%), Positives = 41/195 (21%), Gaps = 2/195 (1%)

Query: 59  QGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQGPTLP 118
                 Q                   P +      +++        +L            
Sbjct: 53  TFSWDNQFNEGNINGVQNDLNFNLATPGVNSSEFNIKEENTGNEGLILPNINSNNNIPHS 112

Query: 119 QGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLLQGPRKG 178
               +          +     T   G T     +  +    P+    +    +       
Sbjct: 113 GETNINTNTVEATNNSGATLNTNTSGNTNADVTSQPKIEVKPEIELTINNANITTVENID 172

Query: 179 PTLPQGPTLPQGPTLPQDPTLLQDPTLLQGPRYKEKELVERSAYGETE--DEEEESDTED 236
               +     +   + +     +    ++    KEK              D+ ++     
Sbjct: 173 DESEKKDDEEKEEDVEKTRKEKEQIEQVKLQAKKEKRSALLDTDEVGSELDDSDDDYLIS 232

Query: 237 IRDDDDDDMEIVVCT 251
             ++D  D  +++C 
Sbjct: 233 EGEEDGPDENLMLCL 247

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	295
1wck_A	220	BCLA protein; collagen-like protein, bacterial sur	98.86
1o91_A	178	Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, ext	87.46

>1wck_A BCLA protein; collagen-like protein, bacterial surface antigen, jelly- roll topology, structural protein; 1.36A {Bacillus anthracis}

Probab=98.86  E-value=1.3e-10  Score=102.07  Aligned_cols=21  Identities=19%  Similarity=0.215  Sum_probs=13.3

Q ss_pred             cCCcccccCCCCCCceEEEee
Q psy13778        231 ESDTEDIRDDDDDDMEIVVCT  251 (295)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~  251 (295)
                      ..+.+++...++|.+.+.+++
T Consensus       122 ~~~~f~~~~~G~Y~is~~~~t  142 (220)
T 1wck_A          122 DADTFVISETGFYKITVIANT  142 (220)
T ss_dssp             ETTEEEECSCEEEEEEEEEEB
T ss_pred             cccceEEecCcEEEEEEEEec
Confidence            345666777777766665554

>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1

Probab=87.46  E-value=0.02  Score=48.07  Aligned_cols=67  Identities=7%  Similarity=-0.068  Sum_probs=32.9

Q ss_pred             cccccCCcccccCCCCCCceEEEeecccccCCCCCCCCccccc-----hHHHhhhhccccccCCCCCCCCeE
Q psy13778        227 DEEEESDTEDIRDDDDDDMEIVVCTSQDSEDLPGPSHSKRMRG-----TRELLTMKLDSCLHFPRQRGSPWT  293 (295)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-----~r~~~~~~~~s~~~~~~~~~~~~~  293 (295)
                      .....+..|++...+.|.+.+.+......+.+........+..     .....++...+.+..|...|.+|.
T Consensus        79 ~Yn~~TG~FTaPv~GvY~Fsft~~~~~~~~~v~L~~Ng~~i~~~~~~~~~~~~~~~S~s~vL~L~~GD~Vwl  150 (178)
T 1o91_A           79 NYNPQTGIFTCEVPGVYYFAYHVHCKGGNVWVALFKNNEPMMYTYDEYKKGFLDQASGSAVLLLRPGDQVFL  150 (178)
T ss_dssp             CEETTTTEEECCSCEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEECCBTTBCEEEEEEEEEEECTTCEEEE
T ss_pred             ceeCCCCEEEcccCeEEEEEEEEEeccceEEEEEEECCEEEEEEEcccCCCcceEEeEEEEEEECCCCEEEE
Confidence            3345667788888888877665443211111111111111100     111223344466677778888886

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00