Psyllid ID: psy13801

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
MVLNISLLSMEASAVNMLCIMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSVPNRE
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEcccccccEEEEEcHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHEEccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEcccccccEEEEccHHHHHHHHHHccccHHHcccc
Coil and Loop (DISEMBL)
MVLNISLLSMEASAVNMLCIMFWLCTDLYQITMAYAYWksgkvtdnAVFDLFfrqnpfqgeFTIFAGLEECIRFLEnfrysdsvpnre
Flexible Loop (DISEMBL)
MVLNISLLSMEASAVNMLCIMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLenfrysdsvpnre
Low Complexity Region (SEG)
MVLNISLLSMEASAVNMLCIMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSVPNRE
Disordered region (IsUnstruct)
***NISLLSMEASAVNMLCIMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRY********
Disordered Region (DISOPRED)
********************MFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRY********
Disordered Region (DISEMBL)
MVLNISLLSMEASAVNMLCIMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRY********
Disordered Region (DISPRO)
**LNISLLSMEASAVNMLCIMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVLNISLLSMEASAVNMLCIMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSVPNRE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	88	2.2.26 [Sep-21-2011]
Q9VQX4	555	Nicotinate phosphoribosyl	no	N/A	0.840	0.133	0.662	6e-24
Q95XX1	562	Nicotinate phosphoribosyl	yes	N/A	0.681	0.106	0.7	5e-22
Q55G10	589	Nicotinate phosphoribosyl	yes	N/A	0.659	0.098	0.637	3e-17
Q6P3H4	546	Nicotinate phosphoribosyl	yes	N/A	0.647	0.104	0.610	2e-16
A5PK51	538	Nicotinate phosphoribosyl	yes	N/A	0.681	0.111	0.566	1e-15
Q6XQN6	538	Nicotinate phosphoribosyl	yes	N/A	0.681	0.111	0.55	6e-15
Q6XQN1	538	Nicotinate phosphoribosyl	yes	N/A	0.681	0.111	0.533	1e-14
Q8CC86	538	Nicotinate phosphoribosyl	yes	N/A	0.681	0.111	0.533	2e-14
O32090	490	Nicotinate phosphoribosyl	yes	N/A	0.681	0.122	0.533	3e-14
O53770	463	Nicotinate phosphoribosyl	yes	N/A	0.659	0.125	0.440	1e-08

>sp|Q9VQX4|PNCB_DROME Nicotinate phosphoribosyltransferase OS=Drosophila melanogaster GN=CG3714 PE=2 SV=2

 Score =  109 bits (272), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 49/74 (66%), Positives = 57/74 (77%)

Query: 10 MEASAVNMLCIMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLE 69
          M+   +N   ++  L TDLYQITMAYAYWKS K  D AVFDLFFR NPF GEFTIFAGLE
Sbjct: 14 MDRGRMNQNGVVQPLLTDLYQITMAYAYWKSDKTDDTAVFDLFFRNNPFHGEFTIFAGLE 73

Query: 70 ECIRFLENFRYSDS 83
          EC++FL++F YS S
Sbjct: 74 ECLKFLDSFHYSQS 87

Catalyzes the conversion of nicotinic acid (NA) to NA mononucleotide (NaMN).
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 1EC: 1

>sp|Q95XX1|PNCB_CAEEL Nicotinate phosphoribosyltransferase OS=Caenorhabditis elegans GN=Y54G2A.17 PE=2 SV=3

 Score =  102 bits (255), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 42/60 (70%), Positives = 52/60 (86%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
          L TD YQITM YAYWK+G   + AVFD+FFR+NPFQGEFT+FAGLE+C+RF+ENF++S S
Sbjct: 31 LLTDFYQITMCYAYWKTGTHNEPAVFDVFFRKNPFQGEFTVFAGLEDCLRFVENFKFSQS 90

Catalyzes the conversion of nicotinic acid (NA) to NA mononucleotide (NaMN).

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: 1

>sp|Q55G10|PNCB_DICDI Nicotinate phosphoribosyltransferase OS=Dictyostelium discoideum GN=naprt PE=2 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/58 (63%), Positives = 47/58 (81%)

Query: 24  LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYS 81
           L TDLYQITMAY+ WK+ +    AVFDL+FR++PF GEFT+FAGLEE IRF+ +F Y+
Sbjct: 63  LLTDLYQITMAYSLWKNNRHEIPAVFDLYFRKSPFGGEFTVFAGLEEVIRFVSDFHYT 120

Catalyzes the conversion of nicotinic acid (NA) to NA mononucleotide (NaMN).

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: 1

>sp|Q6P3H4|PNCB_DANRE Nicotinate phosphoribosyltransferase OS=Danio rerio GN=naprt1 PE=2 SV=2

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 47/59 (79%), Gaps = 2/59 (3%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSD 82
          L TDLYQ  MAYAYW++G+  + AVF+LFFR NPF G F++FAGL +C+ FL+NF +SD
Sbjct: 17 LLTDLYQ--MAYAYWRAGRHNEPAVFELFFRDNPFGGGFSLFAGLSDCLLFLQNFSFSD 73

Catalyzes the conversion of nicotinic acid (NA) to NA mononucleotide (NaMN).

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: 1

>sp|A5PK51|PNCB_BOVIN Nicotinate phosphoribosyltransferase OS=Bos taurus GN=NAPRT1 PE=2 SV=2

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/60 (56%), Positives = 42/60 (70%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
          L TDLYQ TMA  YW++G+  D A F+LFFRQ PF G F + AGL +C+RFL  FR  D+
Sbjct: 16 LLTDLYQATMALGYWRAGRAQDQAEFELFFRQCPFGGAFALAAGLRDCVRFLRAFRLRDA 75

Catalyzes the conversion of nicotinic acid (NA) to NA mononucleotide (NaMN). Essential for NA to increase cellular NAD levels and prevent oxidative stress of the cells.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: 1

>sp|Q6XQN6|PNCB_HUMAN Nicotinate phosphoribosyltransferase OS=Homo sapiens GN=NAPRT1 PE=1 SV=2

 Score = 79.3 bits (194), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 42/60 (70%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
          L TDLYQ TMA  YW++G+  D A F+LFFR+ PF G F + AGL +C+RFL  FR  D+
Sbjct: 16 LLTDLYQATMALGYWRAGRARDAAEFELFFRRCPFGGAFALAAGLRDCVRFLRAFRLRDA 75

Catalyzes the conversion of nicotinic acid (NA) to NA mononucleotide (NaMN). Essential for NA to increase cellular NAD levels and prevent oxidative stress of the cells.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: 1

>sp|Q6XQN1|PNCB_RAT Nicotinate phosphoribosyltransferase OS=Rattus norvegicus GN=Naprt1 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 41/60 (68%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
          L TDLYQ TM   YW++G+  + A F+LFFR  PF G F + AGL++CIRFL  FR  D+
Sbjct: 16 LLTDLYQATMGLGYWRAGRACEEAEFELFFRHCPFGGSFALTAGLQDCIRFLRAFRLRDA 75

Catalyzes the conversion of nicotinic acid (NA) to NA mononucleotide (NaMN). Essential for NA to increase cellular NAD levels and prevent oxidative stress of the cells.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: 1

>sp|Q8CC86|PNCB_MOUSE Nicotinate phosphoribosyltransferase OS=Mus musculus GN=Naprt1 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 42/60 (70%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
          L TDLYQ TMA  YW++G+  + A F+LFFR  PF G F + AGL++C+RFL  FR  D+
Sbjct: 16 LLTDLYQATMALGYWRAGRACEAAEFELFFRHCPFGGSFALSAGLQDCMRFLRAFRLRDA 75

Catalyzes the conversion of nicotinic acid (NA) to NA mononucleotide (NaMN). Essential for NA to increase cellular NAD levels and prevent oxidative stress of the cells.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: 1

>sp|O32090|PNCB_BACSU Nicotinate phosphoribosyltransferase OS=Bacillus subtilis (strain 168) GN=pncB PE=3 SV=1

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 44/60 (73%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
          L TDLYQI MA  YW+ G     A+F+LFFR+ PF+  + +FAGLE+ I +LENF+++DS
Sbjct: 13 LHTDLYQINMAETYWRDGIHEKKAIFELFFRRLPFENGYAVFAGLEKAIEYLENFKFTDS 72

Catalyzes the conversion of nicotinic acid (NA) to NA mononucleotide (NaMN).

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: 1

>sp|O53770|PNCB2_MYCTU Nicotinate phosphoribosyltransferase pncB2 OS=Mycobacterium tuberculosis GN=pncB2 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 1/59 (1%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSD 82
          L TDLY++TMA AYW   +++  AVF++FFR+ P    + + AGL + + FLE FR+ +
Sbjct: 10 LFTDLYEVTMAQAYWAE-RMSGTAVFEIFFRKLPPGRSYIMAAGLADVVEFLEAFRFDE 67

Catalyzes the conversion of nicotinic acid (NA) to NA mononucleotide (NaMN).

Mycobacterium tuberculosis (taxid: 1773)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
193662093	550	PREDICTED: nicotinate phosphoribosyltran	0.738	0.118	0.815	7e-26
328708211	566	PREDICTED: nicotinate phosphoribosyltran	0.738	0.114	0.815	8e-26
357618021	533	nicotinic acid phosphoribosyltransferase	0.681	0.112	0.883	1e-25
321465279	553	hypothetical protein DAPPUDRAFT_322483 [	0.681	0.108	0.866	2e-25
383862727	610	PREDICTED: nicotinate phosphoribosyltran	0.738	0.106	0.784	5e-25
383862725	548	PREDICTED: nicotinate phosphoribosyltran	0.738	0.118	0.784	6e-25
350410412	610	PREDICTED: nicotinate phosphoribosyltran	0.738	0.106	0.769	1e-24
340719441	610	PREDICTED: nicotinate phosphoribosyltran	0.738	0.106	0.769	1e-24
340719439	548	PREDICTED: nicotinate phosphoribosyltran	0.738	0.118	0.769	2e-24
328725774	82	PREDICTED: nicotinate phosphoribosyltran	0.738	0.792	0.815	2e-24

>gi|193662093|ref|XP_001947591.1| PREDICTED: nicotinate phosphoribosyltransferase-like isoform 1 [Acyrthosiphon pisum]

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 53/65 (81%), Positives = 57/65 (87%)

Query: 19 CIMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENF 78
          C++  L TDLYQITMAYAYWKS K +D AVFDLFFRQNPFQGEFTIF GLEEC+RFLENF
Sbjct: 18 CVVQPLLTDLYQITMAYAYWKSEKTSDTAVFDLFFRQNPFQGEFTIFGGLEECLRFLENF 77

Query: 79 RYSDS 83
           YSDS
Sbjct: 78 NYSDS 82

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328708211|ref|XP_003243625.1| PREDICTED: nicotinate phosphoribosyltransferase-like isoform 2 [Acyrthosiphon pisum]

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 53/65 (81%), Positives = 57/65 (87%)

Query: 19 CIMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENF 78
          C++  L TDLYQITMAYAYWKS K +D AVFDLFFRQNPFQGEFTIF GLEEC+RFLENF
Sbjct: 18 CVVQPLLTDLYQITMAYAYWKSEKTSDTAVFDLFFRQNPFQGEFTIFGGLEECLRFLENF 77

Query: 79 RYSDS 83
           YSDS
Sbjct: 78 NYSDS 82

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357618021|gb|EHJ71117.1| nicotinic acid phosphoribosyltransferase [Danaus plexippus]

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/60 (88%), Positives = 55/60 (91%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
          L TDLYQITMAYAYWKSGKV D AVFDLFFR NPFQGEFTIFAGLEEC++FLENF YSDS
Sbjct: 11 LLTDLYQITMAYAYWKSGKVNDVAVFDLFFRTNPFQGEFTIFAGLEECLKFLENFHYSDS 70

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321465279|gb|EFX76281.1| hypothetical protein DAPPUDRAFT_322483 [Daphnia pulex]

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/60 (86%), Positives = 55/60 (91%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
          L TDLYQ+TMAYAYWKSGKV D AVFDLFFR+NPF GEFTIFAGLEECI+FL NFRYSDS
Sbjct: 26 LLTDLYQLTMAYAYWKSGKVEDTAVFDLFFRKNPFSGEFTIFAGLEECIKFLYNFRYSDS 85

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862727|ref|XP_003706835.1| PREDICTED: nicotinate phosphoribosyltransferase-like isoform 2 [Megachile rotundata]

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 51/65 (78%), Positives = 59/65 (90%)

Query: 19 CIMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENF 78
          C++  L TDLYQITMAYAYWKSGK+ D+AVFDL+FR+NPFQGEFTIFAGLEECI+FL+ F
Sbjct: 16 CVVQPLLTDLYQITMAYAYWKSGKMNDHAVFDLYFRRNPFQGEFTIFAGLEECIKFLDKF 75

Query: 79 RYSDS 83
          RYS S
Sbjct: 76 RYSCS 80

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862725|ref|XP_003706834.1| PREDICTED: nicotinate phosphoribosyltransferase-like isoform 1 [Megachile rotundata]

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 51/65 (78%), Positives = 59/65 (90%)

Query: 19 CIMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENF 78
          C++  L TDLYQITMAYAYWKSGK+ D+AVFDL+FR+NPFQGEFTIFAGLEECI+FL+ F
Sbjct: 16 CVVQPLLTDLYQITMAYAYWKSGKMNDHAVFDLYFRRNPFQGEFTIFAGLEECIKFLDKF 75

Query: 79 RYSDS 83
          RYS S
Sbjct: 76 RYSCS 80

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350410412|ref|XP_003489037.1| PREDICTED: nicotinate phosphoribosyltransferase-like isoform 2 [Bombus impatiens]

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/65 (76%), Positives = 58/65 (89%)

Query: 19 CIMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENF 78
          C++  L TDLYQITMAYAYWKS K+ D+AVFDL+FR+NPFQGEFTIFAGLEEC++FLE F
Sbjct: 16 CVVQPLLTDLYQITMAYAYWKSQKMNDHAVFDLYFRKNPFQGEFTIFAGLEECMKFLEKF 75

Query: 79 RYSDS 83
          RYS S
Sbjct: 76 RYSSS 80

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719441|ref|XP_003398162.1| PREDICTED: nicotinate phosphoribosyltransferase-like isoform 2 [Bombus terrestris]

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/65 (76%), Positives = 58/65 (89%)

Query: 19 CIMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENF 78
          C++  L TDLYQITMAYAYWKS K+ D+AVFDL+FR+NPFQGEFTIFAGLEEC++FLE F
Sbjct: 16 CVVQPLLTDLYQITMAYAYWKSQKMNDHAVFDLYFRKNPFQGEFTIFAGLEECMKFLEKF 75

Query: 79 RYSDS 83
          RYS S
Sbjct: 76 RYSSS 80

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719439|ref|XP_003398161.1| PREDICTED: nicotinate phosphoribosyltransferase-like isoform 1 [Bombus terrestris] gi|350410409|ref|XP_003489036.1| PREDICTED: nicotinate phosphoribosyltransferase-like isoform 1 [Bombus impatiens]

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/65 (76%), Positives = 58/65 (89%)

Query: 19 CIMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENF 78
          C++  L TDLYQITMAYAYWKS K+ D+AVFDL+FR+NPFQGEFTIFAGLEEC++FLE F
Sbjct: 16 CVVQPLLTDLYQITMAYAYWKSQKMNDHAVFDLYFRKNPFQGEFTIFAGLEECMKFLEKF 75

Query: 79 RYSDS 83
          RYS S
Sbjct: 76 RYSSS 80

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328725774|ref|XP_003248611.1| PREDICTED: nicotinate phosphoribosyltransferase-like, partial [Acyrthosiphon pisum]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/65 (81%), Positives = 57/65 (87%)

Query: 19 CIMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENF 78
          C++  L TDLYQITMAYAYWKS K +D AVFDLFFRQNPFQGEFTIF GLEEC+RFLENF
Sbjct: 18 CVVQPLLTDLYQITMAYAYWKSEKTSDTAVFDLFFRQNPFQGEFTIFGGLEECLRFLENF 77

Query: 79 RYSDS 83
           YSDS
Sbjct: 78 NYSDS 82

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
FB|FBgn0031589	555	CG3714 [Drosophila melanogaste	0.840	0.133	0.662	9.8e-22
WB|WBGene00021882	562	Y54G2A.17 [Caenorhabditis eleg	0.681	0.106	0.7	5.5e-20
UNIPROTKB|Q95XX1	562	Y54G2A.17 "Nicotinate phosphor	0.681	0.106	0.7	5.5e-20
TAIR|locus:2115095	559	NAPRT1 "nicotinate phosphoribo	0.670	0.105	0.694	8.5e-19
TAIR|locus:2046872	557	NAPRT2 "nicotinate phosphoribo	0.670	0.105	0.661	1.4e-18
ZFIN|ZDB-GENE-040426-1897	548	naprt1 "nicotinate phosphoribo	0.670	0.107	0.627	9.3e-17
DICTYBASE|DDB_G0268472	589	naprt "nicotinate phosphoribos	0.659	0.098	0.637	3.5e-15
UNIPROTKB|A5PK51	538	NAPRT1 "Nicotinate phosphoribo	0.681	0.111	0.566	7.5e-14
UNIPROTKB|F1N3B0	538	NAPRT1 "Nicotinate phosphoribo	0.681	0.111	0.566	7.5e-14
UNIPROTKB|C9J8U2	490	NAPRT1 "Nicotinate phosphoribo	0.681	0.122	0.55	2.8e-13

FB|FBgn0031589 CG3714 [Drosophila melanogaster (taxid:7227)]

 Score = 261 (96.9 bits), Expect = 9.8e-22, P = 9.8e-22
 Identities = 49/74 (66%), Positives = 57/74 (77%)

Query:    10 MEASAVNMLCIMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLE 69
             M+   +N   ++  L TDLYQITMAYAYWKS K  D AVFDLFFR NPF GEFTIFAGLE
Sbjct:    14 MDRGRMNQNGVVQPLLTDLYQITMAYAYWKSDKTDDTAVFDLFFRNNPFHGEFTIFAGLE 73

Query:    70 ECIRFLENFRYSDS 83
             EC++FL++F YS S
Sbjct:    74 ECLKFLDSFHYSQS 87

GO:0004516 "nicotinate phosphoribosyltransferase activity" evidence=ISS

GO:0004514 "nicotinate-nucleotide diphosphorylase (carboxylating) activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0009435 "NAD biosynthetic process" evidence=IEA

GO:0019358 "nicotinate nucleotide salvage" evidence=IEA

WB|WBGene00021882 Y54G2A.17 [Caenorhabditis elegans (taxid:6239)]

 Score = 245 (91.3 bits), Expect = 5.5e-20, P = 5.5e-20
 Identities = 42/60 (70%), Positives = 52/60 (86%)

Query:    24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
             L TD YQITM YAYWK+G   + AVFD+FFR+NPFQGEFT+FAGLE+C+RF+ENF++S S
Sbjct:    31 LLTDFYQITMCYAYWKTGTHNEPAVFDVFFRKNPFQGEFTVFAGLEDCLRFVENFKFSQS 90

GO:0004516 "nicotinate phosphoribosyltransferase activity" evidence=IEA

GO:0019358 "nicotinate nucleotide salvage" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0009435 "NAD biosynthetic process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

UNIPROTKB|Q95XX1 Y54G2A.17 "Nicotinate phosphoribosyltransferase" [Caenorhabditis elegans (taxid:6239)]

 Score = 245 (91.3 bits), Expect = 5.5e-20, P = 5.5e-20
 Identities = 42/60 (70%), Positives = 52/60 (86%)

Query:    24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
             L TD YQITM YAYWK+G   + AVFD+FFR+NPFQGEFT+FAGLE+C+RF+ENF++S S
Sbjct:    31 LLTDFYQITMCYAYWKTGTHNEPAVFDVFFRKNPFQGEFTVFAGLEDCLRFVENFKFSQS 90

GO:0005829 "cytosol" evidence=ISS

GO:0006979 "response to oxidative stress" evidence=ISS

GO:0004516 "nicotinate phosphoribosyltransferase activity" evidence=ISS

TAIR|locus:2115095 NAPRT1 "nicotinate phosphoribosyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 8.5e-19, P = 8.5e-19
 Identities = 41/59 (69%), Positives = 50/59 (84%)

Query:    24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSD 82
             L  DLYQ TMAYAYWK+GK ++ +VFDL+FR+NPF GE+TIFAGLEECI+FL NF  +D
Sbjct:    28 LLNDLYQFTMAYAYWKAGKQSERSVFDLYFRKNPFGGEYTIFAGLEECIKFLANFNLTD 86

GO:0004516 "nicotinate phosphoribosyltransferase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0009435 "NAD biosynthetic process" evidence=IEA

GO:0019358 "nicotinate nucleotide salvage" evidence=IEA;ISS

GO:0019363 "pyridine nucleotide biosynthetic process" evidence=IEA

TAIR|locus:2046872 NAPRT2 "nicotinate phosphoribosyltransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 39/59 (66%), Positives = 50/59 (84%)

Query:    24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSD 82
             L  DLYQ TMAYAYWK+GK  + +VFDL+FR+NPF GE+T+FAGLEEC++FL NF+ +D
Sbjct:    26 LLNDLYQFTMAYAYWKAGKHNERSVFDLYFRKNPFGGEYTVFAGLEECVKFLANFKLTD 84

GO:0004516 "nicotinate phosphoribosyltransferase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0009435 "NAD biosynthetic process" evidence=IEA

GO:0019358 "nicotinate nucleotide salvage" evidence=IEA;ISS

GO:0019363 "pyridine nucleotide biosynthetic process" evidence=IEA

ZFIN|ZDB-GENE-040426-1897 naprt1 "nicotinate phosphoribosyltransferase domain containing 1" [Danio rerio (taxid:7955)]

 Score = 215 (80.7 bits), Expect = 9.3e-17, P = 9.3e-17
 Identities = 37/59 (62%), Positives = 48/59 (81%)

Query:    24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSD 82
             L TDLYQ TMAYAYW++G+  + AVF+LFFR NPF G F++FAGL +C+ FL+NF +SD
Sbjct:    17 LLTDLYQFTMAYAYWRAGRHNEPAVFELFFRDNPFGGGFSLFAGLSDCLLFLQNFSFSD 75

GO:0019358 "nicotinate nucleotide salvage" evidence=IEA

GO:0004516 "nicotinate phosphoribosyltransferase activity" evidence=IEA;ISS

GO:0009435 "NAD biosynthetic process" evidence=IEA

GO:0004514 "nicotinate-nucleotide diphosphorylase (carboxylating) activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

GO:0006979 "response to oxidative stress" evidence=ISS

GO:0019363 "pyridine nucleotide biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

DICTYBASE|DDB_G0268472 naprt "nicotinate phosphoribosyltransferase-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 201 (75.8 bits), Expect = 3.5e-15, P = 3.5e-15
 Identities = 37/58 (63%), Positives = 47/58 (81%)

Query:    24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYS 81
             L TDLYQITMAY+ WK+ +    AVFDL+FR++PF GEFT+FAGLEE IRF+ +F Y+
Sbjct:    63 LLTDLYQITMAYSLWKNNRHEIPAVFDLYFRKSPFGGEFTVFAGLEEVIRFVSDFHYT 120

GO:0019358 "nicotinate nucleotide salvage" evidence=IEA

GO:0009435 "NAD biosynthetic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004516 "nicotinate phosphoribosyltransferase activity" evidence=IEA

GO:0004514 "nicotinate-nucleotide diphosphorylase (carboxylating) activity" evidence=IEA

GO:0019363 "pyridine nucleotide biosynthetic process" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|A5PK51 NAPRT1 "Nicotinate phosphoribosyltransferase" [Bos taurus (taxid:9913)]

 Score = 188 (71.2 bits), Expect = 7.5e-14, P = 7.5e-14
 Identities = 34/60 (56%), Positives = 42/60 (70%)

Query:    24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
             L TDLYQ TMA  YW++G+  D A F+LFFRQ PF G F + AGL +C+RFL  FR  D+
Sbjct:    16 LLTDLYQATMALGYWRAGRAQDQAEFELFFRQCPFGGAFALAAGLRDCVRFLRAFRLRDA 75

GO:0009435 "NAD biosynthetic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004516 "nicotinate phosphoribosyltransferase activity" evidence=IEA

GO:0019358 "nicotinate nucleotide salvage" evidence=IEA

GO:0004514 "nicotinate-nucleotide diphosphorylase (carboxylating) activity" evidence=IEA

UNIPROTKB|F1N3B0 NAPRT1 "Nicotinate phosphoribosyltransferase" [Bos taurus (taxid:9913)]

 Score = 188 (71.2 bits), Expect = 7.5e-14, P = 7.5e-14
 Identities = 34/60 (56%), Positives = 42/60 (70%)

Query:    24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
             L TDLYQ TMA  YW++G+  D A F+LFFRQ PF G F + AGL +C+RFL  FR  D+
Sbjct:    16 LLTDLYQATMALGYWRAGRAQDQAEFELFFRQCPFGGAFALAAGLRDCVRFLRAFRLRDA 75

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004516 "nicotinate phosphoribosyltransferase activity" evidence=IEA

GO:0019358 "nicotinate nucleotide salvage" evidence=IEA

GO:0009435 "NAD biosynthetic process" evidence=IEA

GO:0004514 "nicotinate-nucleotide diphosphorylase (carboxylating) activity" evidence=IEA

UNIPROTKB|C9J8U2 NAPRT1 "Nicotinate phosphoribosyltransferase" [Homo sapiens (taxid:9606)]

 Score = 182 (69.1 bits), Expect = 2.8e-13, P = 2.8e-13
 Identities = 33/60 (55%), Positives = 42/60 (70%)

Query:    24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
             L TDLYQ TMA  YW++G+  D A F+LFFR+ PF G F + AGL +C+RFL  FR  D+
Sbjct:    16 LLTDLYQATMALGYWRAGRARDAAEFELFFRRCPFGGAFALAAGLRDCVRFLRAFRLRDA 75

GO:0004514 "nicotinate-nucleotide diphosphorylase (carboxylating) activity" evidence=IEA

GO:0004516 "nicotinate phosphoribosyltransferase activity" evidence=IEA

GO:0009435 "NAD biosynthetic process" evidence=IEA

GO:0019358 "nicotinate nucleotide salvage" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6XQN1	PNCB_RAT	2, ., 4, ., 2, ., 1, 1	0.5333	0.6818	0.1115	yes	N/A
Q55G10	PNCB_DICDI	2, ., 4, ., 2, ., 1, 1	0.6379	0.6590	0.0984	yes	N/A
Q6XQN6	PNCB_HUMAN	2, ., 4, ., 2, ., 1, 1	0.55	0.6818	0.1115	yes	N/A
Q95XX1	PNCB_CAEEL	2, ., 4, ., 2, ., 1, 1	0.7	0.6818	0.1067	yes	N/A
A5PK51	PNCB_BOVIN	2, ., 4, ., 2, ., 1, 1	0.5666	0.6818	0.1115	yes	N/A
Q6P3H4	PNCB_DANRE	2, ., 4, ., 2, ., 1, 1	0.6101	0.6477	0.1043	yes	N/A
Q8CC86	PNCB_MOUSE	2, ., 4, ., 2, ., 1, 1	0.5333	0.6818	0.1115	yes	N/A
O32090	PNCB_BACSU	2, ., 4, ., 2, ., 1, 1	0.5333	0.6818	0.1224	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	88
PLN02885	545	PLN02885, PLN02885, nicotinate phosphoribosyltrans	1e-34
cd01570	327	cd01570, NAPRTase_A, Nicotinate phosphoribosyltran	5e-32
TIGR01513	443	TIGR01513, NAPRTase_put, putative nicotinate phosp	1e-24
PRK09243	464	PRK09243, PRK09243, nicotinate phosphoribosyltrans	3e-24
PRK12484	443	PRK12484, PRK12484, nicotinate phosphoribosyltrans	3e-19
cd01567	343	cd01567, NAPRTase_PncB, Nicotinate phosphoribosylt	3e-19
COG1488	405	COG1488, PncB, Nicotinic acid phosphoribosyltransf	2e-14
cd00516	281	cd00516, PRTase_typeII, Phosphoribosyltransferase	7e-10

>gnl|CDD|178473 PLN02885, PLN02885, nicotinate phosphoribosyltransferase

 Score =  122 bits (309), Expect = 1e-34
 Identities = 43/60 (71%), Positives = 52/60 (86%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
          L TDLYQ TMAYAYWK+GK  D AVFDLFFR+NPF GE+T+FAGLEEC+RF+ NF+++D 
Sbjct: 13 LLTDLYQFTMAYAYWKAGKHLDRAVFDLFFRKNPFGGEYTVFAGLEECLRFIANFKFTDD 72

Length = 545

>gnl|CDD|238804 cd01570, NAPRTase_A, Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A

 Score =  113 bits (284), Expect = 5e-32
 Identities = 36/60 (60%), Positives = 46/60 (76%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
          L TDLYQ+TMA AYWK GK    AVF+LFFR+ PF G + +FAGLEE + +LENFR+++ 
Sbjct: 2  LLTDLYQLTMAQAYWKEGKHNKPAVFELFFRKLPFGGGYAVFAGLEELLEYLENFRFTEE 61

Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi). Length = 327

>gnl|CDD|233446 TIGR01513, NAPRTase_put, putative nicotinate phosphoribosyltransferase

 Score = 94.7 bits (236), Expect = 1e-24
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
          L TDLY++TMA  Y++ GK    AVF++FFR+ PF   + +FAGLE+ + FLENFR+   
Sbjct: 2  LLTDLYELTMAQGYFREGKANQPAVFEVFFRKLPFGRGYAVFAGLEDLLEFLENFRFDAE 61

A deep split separates two related families of proteins, one of which includes experimentally characterized examples of nicotinate phosphoribosyltransferase, an the first enzyme of NAD salvage biosynthesis. This model represents the other family. Members have a different (longer) spacing of several key motifs and have an additional C-terminal domain of up to 100 residues. One argument suggesting that this family represents the same enzyme is that no species has a member of both families. Another is that the gene encoding this protein is located near other NAD salvage biosynthesis genes in Nostoc and in at least four different Gram-positive bacteria. NAD and NADP are ubiquitous in life. Most members of this family are Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cutoffs [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides]. Length = 443

>gnl|CDD|236426 PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated

 Score = 94.1 bits (235), Expect = 3e-24
 Identities = 29/60 (48%), Positives = 41/60 (68%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
          L TDLY++TMA AY + G     AVF+LFFR+ PF   + +FAGLE  + +LEN R+++ 
Sbjct: 11 LLTDLYELTMAQAYLRDGIHNRRAVFELFFRKLPFGRGYAVFAGLERLLEYLENLRFTEE 70

Length = 464

>gnl|CDD|237112 PRK12484, PRK12484, nicotinate phosphoribosyltransferase; Provisional

 Score = 79.8 bits (197), Expect = 3e-19
 Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
          L TDLY++TMA AY + G ++  A F LF+R+ P    F I AGL + + FLE FR+ + 
Sbjct: 6  LLTDLYEVTMANAYLREG-MSAPATFSLFYRKLPDGRGFLIAAGLADVVEFLEAFRFDEQ 64

Length = 443

>gnl|CDD|238801 cd01567, NAPRTase_PncB, Nicotinate phosphoribosyltransferase (NAPRTase) family

 Score = 79.2 bits (196), Expect = 3e-19
 Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
          L TDLY++TM  AY          VF+  FR NPF G++ +FAGLEE ++ LEN R+++ 
Sbjct: 2  LDTDLYKLTMMQAYLY-PYPNTRVVFEFTFRSNPFGGDYIVFAGLEEVLKLLENLRFTEE 60

Query: 84 V 84
           
Sbjct: 61 E 61

Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. Length = 343

>gnl|CDD|224405 COG1488, PncB, Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]

 Score = 65.8 bits (161), Expect = 2e-14
 Identities = 29/59 (49%), Positives = 38/59 (64%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSD 82
          L TDLY++TM  AY   G      VF+ FFR+ PF G + +FAGLEE +  LEN R+S+
Sbjct: 15 LDTDLYKLTMLQAYLHDGPNNVTVVFEFFFRKLPFLGGYAVFAGLEEVLELLENLRFSE 73

Length = 405

>gnl|CDD|238286 cd00516, PRTase_typeII, Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD

 Score = 53.0 bits (128), Expect = 7e-10
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 27 DLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSV 84
          DLY++TM  AY         A  +   R++P+     + AGLEE +  LE  R+   +
Sbjct: 1  DLYKLTMIQAY---PPPDTRATAEFTAREDPY----GVLAGLEEALELLELLRFPGPL 51

QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway. Length = 281

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	88
PLN02885	545	nicotinate phosphoribosyltransferase	99.89
KOG2511|consensus	420		99.87
TIGR01513	443	NAPRTase_put putative nicotinate phosphoribosyltra	99.84
PRK12484	443	nicotinate phosphoribosyltransferase; Provisional	99.83
PRK09243	464	nicotinate phosphoribosyltransferase; Validated	99.8
PRK05321	400	nicotinate phosphoribosyltransferase; Provisional	99.8
cd01570	327	NAPRTase_A Nicotinate phosphoribosyltransferase (N	99.79
cd01401	377	PncB_like Nicotinate phosphoribosyltransferase (NA	99.75
TIGR01514	394	NAPRTase nicotinate phosphoribosyltransferase. Thi	99.74
COG1488	405	PncB Nicotinic acid phosphoribosyltransferase [Coe	99.64
PRK09198	463	putative nicotinate phosphoribosyltransferase; Pro	99.63
cd01567	343	NAPRTase_PncB Nicotinate phosphoribosyltransferase	99.5
PHA02594	470	nadV nicotinamide phosphoribosyl transferase; Prov	99.41
cd01569	407	PBEF_like pre-B-cell colony-enhancing factor (PBEF	99.3
PRK08662	343	nicotinate phosphoribosyltransferase; Reviewed	99.06
cd00516	281	PRTase_typeII Phosphoribosyltransferase (PRTase) t	97.54
PRK07188	352	nicotinate phosphoribosyltransferase; Provisional	95.91
cd01571	302	NAPRTase_B Nicotinate phosphoribosyltransferase (N	95.35

>PLN02885 nicotinate phosphoribosyltransferase

Probab=99.89  E-value=3.1e-24  Score=178.11  Aligned_cols=71  Identities=61%  Similarity=1.077  Sum_probs=69.3

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801         16 NMLCIMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSVPN   86 (88)
Q Consensus        16 ~~~~~~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs~edI~   86 (88)
                      |+++++.+|+||+||+||+|+||+.+.++++|+||+|||++||+|+|+|+|||+++|++|+++||+++||+
T Consensus         5 ~~~~~i~~LlTDlYklTM~~ay~~~~~~~~~avf~~f~R~~p~~~~~~v~aGL~~~l~~L~~l~Ft~edi~   75 (545)
T PLN02885          5 PTNPMVTPLLTDLYQFTMAYAYWKAGKHLDRAVFDLFFRKNPFGGEYTVFAGLEECLRFIANFKFTDDDID   75 (545)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEecCCCCCCcccHHHHHHHHHHHHhhCCCCHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999986

>KOG2511|consensus

Probab=99.87  E-value=2.8e-23  Score=167.44  Aligned_cols=70  Identities=43%  Similarity=0.657  Sum_probs=67.5

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801         16 NMLCIMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSVPN   86 (88)
Q Consensus        16 ~~~~~~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs~edI~   86 (88)
                      |.+|++++|+||+||+||+|+||++ .++++++|+++||++||+|+|.+++||+++++||.||+|++|||+
T Consensus         2 ~e~~~vspL~tDlYkiTM~yA~wk~-~~de~~vy~~~~R~npf~g~~~~f~~Lee~irfl~N~~lt~eei~   71 (420)
T KOG2511|consen    2 SEPPMVSPLDTDLYKITMAYAVWKA-KPDERVVYKYTNRSNPFGGNYEAFNWLEEQIRFLANLKLTDEEID   71 (420)
T ss_pred             CCCcccchhhhhHHHHHHHHHHHhh-CCCCceEEEeeecCCCCCchHHHHHHHHHHHHHHhhcCCCHHHHH
Confidence            5678999999999999999999997 999999999999999999999999999999999999999999986

>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase

Probab=99.84  E-value=7.6e-22  Score=160.20  Aligned_cols=64  Identities=47%  Similarity=0.881  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801         23 WLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSVPN   86 (88)
Q Consensus        23 ~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs~edI~   86 (88)
                      +|+||+||+||+|+||+.|+++++++||+|+|++||+|+|+|++||+++|++|+++||+++||+
T Consensus         1 ~l~TD~Y~ltM~~~~~~~~~~~~~~~fe~~~R~~p~~~~~~v~~GL~~~l~~L~~~~ft~eei~   64 (443)
T TIGR01513         1 ALLTDLYELTMAQGYFREGKANQPAVFEVFFRKLPFGRGYAVFAGLEDLLEFLENFRFDAEDIE   64 (443)
T ss_pred             CcchhHHHHHHHHHHHHhCCCCceEEEEEEECCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHH
Confidence            4899999999999999999988889999999999999999999999999999999999999986

Most members of this family are Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cutoffs.

>PRK12484 nicotinate phosphoribosyltransferase; Provisional

Probab=99.83  E-value=2.9e-21  Score=156.69  Aligned_cols=64  Identities=42%  Similarity=0.702  Sum_probs=60.7

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801         22 FWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSVPN   86 (88)
Q Consensus        22 ~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs~edI~   86 (88)
                      .+|+||+||+||+|+||++|++.+ ++||+|+|++|++++|+|+|||+++|++|++++|+++||+
T Consensus         4 ~~l~TD~Y~ltM~~~~~~~~~~~~-~~fe~~~R~~p~~~~~~v~aGl~~~l~~L~~~~ft~eei~   67 (443)
T PRK12484          4 LALLTDLYEVTMANAYLREGMSAP-ATFSLFYRKLPDGRGFLIAAGLADVVEFLEAFRFDEQDLR   67 (443)
T ss_pred             cchHHHHHHHHHHHHHHHhCCCCe-EEEEEEECCCCCCCceehHHHHHHHHHHHhcCCCCHHHHH
Confidence            479999999999999999998765 9999999999999999999999999999999999999985

>PRK09243 nicotinate phosphoribosyltransferase; Validated

Probab=99.80  E-value=2e-20  Score=152.33  Aligned_cols=67  Identities=43%  Similarity=0.764  Sum_probs=63.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801         20 IMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSVPN   86 (88)
Q Consensus        20 ~~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs~edI~   86 (88)
                      ..++|+||+|++||+++||++|.++.+++|++|+|++|++++|+|+|||+++|++|+++|||++||+
T Consensus         7 ~~~~L~TD~Ykltm~~~~~~~~~~~~~~~f~~~~R~~p~~~~~~v~aGl~~~l~~L~~~~ft~~ei~   73 (464)
T PRK09243          7 DSLALLTDLYELTMAQAYLRDGIHNRRAVFELFFRKLPFGRGYAVFAGLERLLEYLENLRFTEEDIE   73 (464)
T ss_pred             cchHHHHHHHHHHHHHHHHHhCCCCcEEEEEEEEcCCCCCcchHHHHHHHHHHHHHHhCCCCHHHHH
Confidence            3458999999999999999999999999999999999999999999999999999999999999985

>PRK05321 nicotinate phosphoribosyltransferase; Provisional

Probab=99.80  E-value=2.8e-20  Score=149.87  Aligned_cols=63  Identities=21%  Similarity=0.268  Sum_probs=57.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCC-CCCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801         21 MFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNP-FQGEFTIFAGLEECIRFLENFRYSDSVPN   86 (88)
Q Consensus        21 ~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~P-f~g~f~V~AGLe~vl~~l~n~rFs~edI~   86 (88)
                      .+.|.||+||+||+|+||+.+ ++.+|+|++|+|++| |+++|++  ||+++|++|++|||+++||+
T Consensus        10 ~slLdTDlYklTM~~a~~~~~-~~~~~~f~~f~R~~~~~~~~~~~--gl~~~i~~l~~l~ft~eei~   73 (400)
T PRK05321         10 RSLLDTDFYKLTMQQAVLHHY-PDAQVEYEFICRNDEVDLAEYID--EIREQLDHLCTLRLTDDELD   73 (400)
T ss_pred             HHhHhhHHHHHHHHHHHHHhC-CCCeEEEEEEECCCCCcCchHHH--HHHHHHHHHHhCCCCHHHHH
Confidence            344569999999999999987 788899999999999 9999987  99999999999999999985

>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A

Probab=99.79  E-value=3.5e-20  Score=144.58  Aligned_cols=64  Identities=56%  Similarity=1.014  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801         23 WLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSVPN   86 (88)
Q Consensus        23 ~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs~edI~   86 (88)
                      +|+||+|++||+|+||++++++.+++|++|+|++|++++|+|++||+++|++|+++|||++||+
T Consensus         1 ~l~tD~Y~ltm~~~~~~~~~~~~~~~~~~~~R~~p~~~~~~v~~gl~~~l~~L~~l~~t~~ei~   64 (327)
T cd01570           1 ALLTDLYQLTMAQAYWKEGKHNKPAVFELFFRKLPFGGGYAVFAGLEELLEYLENFRFTEEDID   64 (327)
T ss_pred             CcchhHHHHHHHHHHHHcCCCCCeEEEEEEECCCCCCCcccHHHHHHHHHHHHhcCCCCHHHHH
Confidence            4899999999999999999789999999999999999999999999999999999999999985

Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).

>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB

Probab=99.75  E-value=4.2e-19  Score=142.21  Aligned_cols=62  Identities=27%  Similarity=0.269  Sum_probs=57.8

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCC-CCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801         22 FWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPF-QGEFTIFAGLEECIRFLENFRYSDSVPN   86 (88)
Q Consensus        22 ~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf-~g~f~V~AGLe~vl~~l~n~rFs~edI~   86 (88)
                      +-|.||+||+||+|+||+.+++. +|+|++|+|++|+ .|+|  ++||+++|++|++|||+++||+
T Consensus         2 slLdTDlYklTM~qa~~~~~~~~-~a~f~f~~R~~p~~~~~~--~~gl~~~i~~l~~l~ft~~el~   64 (377)
T cd01401           2 SLLDTDLYKLTMQQAVLHHYPDV-QVTYEFTNRSPEDFLEEA--AEALREQIDHLANLRFSEEELA   64 (377)
T ss_pred             cchhhHHHHHHHHHHHHHhCCCC-eEEEEEEECCCCCcchhH--HHHHHHHHHHHHhCCCCHHHHH
Confidence            35899999999999999998865 8999999999999 9999  8999999999999999999985

Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria, archea and funghi.

>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase

Probab=99.74  E-value=5.3e-19  Score=142.46  Aligned_cols=63  Identities=30%  Similarity=0.387  Sum_probs=58.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCC-CCCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801         21 MFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNP-FQGEFTIFAGLEECIRFLENFRYSDSVPN   86 (88)
Q Consensus        21 ~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~P-f~g~f~V~AGLe~vl~~l~n~rFs~edI~   86 (88)
                      .+.|.||+||+||+|+||+++ ++.+++|++|+|++| |.++|+  +||+++|++|++||||++||+
T Consensus         3 ~slLdTDlYklTM~qa~~~~~-~~~~~~f~f~~R~~p~~~~~~~--~gl~~~i~~l~~l~ft~eel~   66 (394)
T TIGR01514         3 RSLLDTDLYKITMHQAVFHNF-PDVHVTYEFICRSSQLFLKEAA--EALREEISALGNLRFTDDEIE   66 (394)
T ss_pred             ccchhhHHHHHHHHHHHHHhC-CCceEEEEEEECCCCCcchhHH--HHHHHHHHHHHHCCCCHHHHH
Confidence            467999999999999999987 688899999999999 877777  999999999999999999985

This model represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primary proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is TIGR01513. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase (see model TIGR01513).

>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]

Probab=99.64  E-value=6.8e-17  Score=130.09  Aligned_cols=67  Identities=45%  Similarity=0.773  Sum_probs=63.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801         20 IMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSVPN   86 (88)
Q Consensus        20 ~~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs~edI~   86 (88)
                      .-+.|.||+|++||+++||..+.++.+++|++|+|+.|++++|+++||++++|++|++|+|+++||+
T Consensus        11 i~~~L~TD~Ykltm~q~~~~~~~~~~~v~~e~~~R~~p~~~~~~~~~gl~~~l~~l~~l~fs~ee~~   77 (405)
T COG1488          11 IKSLLDTDLYKLTMLQAYLHDGPNNVTVVFEFFFRKLPFLGGYAVFAGLEEVLELLENLRFSEEEIA   77 (405)
T ss_pred             HhhhhHhHHHHHHHHHHHHhhCCCccEEEEEEEecCCcccchHHHHHHHHHHHHHHhhcCCCHHHHH
Confidence            5567999999999999999999888899999999999999999999999999999999999999864

>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional

Probab=99.63  E-value=1.9e-16  Score=129.93  Aligned_cols=62  Identities=15%  Similarity=0.188  Sum_probs=56.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHH-HHhcCCCCCCCCCC
Q psy13801         21 MFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIR-FLENFRYSDSVPNR   87 (88)
Q Consensus        21 ~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~-~l~n~rFs~edI~~   87 (88)
                      ..+|+||+||+||++.|++    +.+++|++|+||+|++++|+|++||+++|+ ||+++ |+++||+.
T Consensus         6 ~~~L~TD~Yklth~~~Y~~----~~~~vf~~f~rr~p~~~~~~v~~GL~~~l~~yl~~~-ft~~~i~~   68 (463)
T PRK09198          6 NPILNTDSYKASHRLQYPP----GTTYLYSYLESRSGGRYDKVVFFGLQYFLKEYLIQP-ITEAFIDE   68 (463)
T ss_pred             chhHhHhhHHHHHHHhccC----CCcEEEEEEEEeCCCCCCeEEEEEHHHHHHHHHHhc-CCHHHHHH
Confidence            3469999999999999976    348999999999999999999999999998 99999 99999863

>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family

Probab=99.50  E-value=8.9e-15  Score=113.42  Aligned_cols=62  Identities=44%  Similarity=0.801  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801         24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSVPN   86 (88)
Q Consensus        24 LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs~edI~   86 (88)
                      |.||+|++||+++|++ +..+.+++|++|+|+.|++++|.|++||+++|++|++++|+++||+
T Consensus         2 L~TD~Yk~tm~~~~~~-~~~~~~v~~~~~~R~~~~~~~~~v~~gl~~~l~~l~~~~~~~~~~~   63 (343)
T cd01567           2 LDTDLYKLTMMQAYLY-PYPNTRVVFEFTFRSNPFGGDYIVFAGLEEVLKLLENLRFTEEEIE   63 (343)
T ss_pred             ccchHHHHHHHHHHHh-CCCCeEEEEEEEEcCCCCCCCeeHHHHHHHHHHHHHhCCCCHHHHH
Confidence            7899999999999955 8888899999999999999999999999999999999999999876

Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.

>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional

Probab=99.41  E-value=1.4e-13  Score=113.35  Aligned_cols=61  Identities=23%  Similarity=0.251  Sum_probs=55.9

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHH-HhcCCCCCCCCCC
Q psy13801         22 FWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRF-LENFRYSDSVPNR   87 (88)
Q Consensus        22 ~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~-l~n~rFs~edI~~   87 (88)
                      ..|+||.||+||++.||+.   .+.++|++|+|++||. +|+||+||+.+|++ +.+ +|+++||+.
T Consensus        10 ~~L~tD~Yk~th~~qYp~~---~~~~~~~~~~R~~~~~-~~~vf~GLq~~i~~~l~~-~~t~~~i~~   71 (470)
T PHA02594         10 IILMTDSYKLSHWSQYPKG---TDYVMFYLEPRGGKFF-DKVVVFGIQYFVKKYFFE-PITMEVVEE   71 (470)
T ss_pred             hhHhhhhhHHHHHHhCCCC---CcEEEEEEEecCCCCC-CEEEEeeHHHHHHHHHhc-CCCHHHHHH
Confidence            4599999999999999994   6679999999999997 89999999999997 999 999999863

>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like

Probab=99.30  E-value=1.8e-12  Score=105.36  Aligned_cols=59  Identities=20%  Similarity=0.232  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCCCCC-CC
Q psy13801         24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSV-PN   86 (88)
Q Consensus        24 LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs~ed-I~   86 (88)
                      |+||+||+||.+.|++ |.   +++|+.|.||.|.+++|+|++||+.+|+++++.+|++++ |+
T Consensus         2 L~TD~Yk~th~~qYp~-gt---~~vfs~f~~R~~~~~~~~v~~GLq~~l~~~l~~~f~~~~~i~   61 (407)
T cd01569           2 LATDSYKVSHRLQYPP-GT---TAVYSYLEPRGGKYYDQTVFFGLQYFLKKYLIDPVNRDFFID   61 (407)
T ss_pred             cccchHHHHHHHhccC-CC---ceEEEEEEecCCCCCCeEEEeeHHHHHHHHHhcCCCHHHhHH
Confidence            7899999999999999 44   699999999999889999999999999999999999998 65

The mammalian members of this group of nicotinate phosphoribosyltransferases (NAPRTases) were originally identified as genes whose expression is upregulated upon activation in lymphoid cells. In general, nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis.

>PRK08662 nicotinate phosphoribosyltransferase; Reviewed

Probab=99.06  E-value=4.4e-10  Score=88.93  Aligned_cols=60  Identities=30%  Similarity=0.350  Sum_probs=55.4

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCC
Q psy13801         18 LCIMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFR   79 (88)
Q Consensus        18 ~~~~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~r   79 (88)
                      ..+...|.||+|+.+|++++|+.|. +..+++++|.||+| +|++.|+||++.+.+.++++.
T Consensus        10 ~~~~~~l~~D~Y~~~t~~~l~~~g~-~~~~~~~i~~R~~p-~~~~~i~aG~~~a~~~~~~~~   69 (343)
T PRK08662         10 EEIKSGKTTDIYFERTVEILEHAGK-NPKVVAEVTASSLP-KGEWGVFAGLEEVLELLEGKP   69 (343)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHcCC-CCeEEEEEEEecCC-CCCCEEEccHHHHHHHHhhCC
Confidence            3466789999999999999999998 88899999999999 999999999999999998764

>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD

Probab=97.54  E-value=0.00019  Score=53.77  Aligned_cols=47  Identities=36%  Similarity=0.636  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCC
Q psy13801         27 DLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRY   80 (88)
Q Consensus        27 DlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rF   80 (88)
                      |+|.++|.+.  + ...+.++.+.++.|+.|    +.|+||++.+++.++.++|
T Consensus         1 D~y~~~~~~~--~-~~~~~~~~~~~~~R~~~----~~v~~Gl~~~~~~l~~l~~   47 (281)
T cd00516           1 DLYKLTMIQA--Y-PPPDTRATAEFTAREDP----YGVLAGLEEALELLELLRF   47 (281)
T ss_pred             ChhHHHHHhh--h-CCCCCEEEEEEEEecCC----CEEEcCHHHHHHHHHhcCC
Confidence            8999999988  3 45577899999999987    8999999999999999974

QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.

>PRK07188 nicotinate phosphoribosyltransferase; Provisional

Probab=95.91  E-value=0.03  Score=45.14  Aligned_cols=60  Identities=18%  Similarity=0.202  Sum_probs=46.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCCCCCC
Q psy13801         20 IMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSVP   85 (88)
Q Consensus        20 ~~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs~edI   85 (88)
                      +-....||-|=+.--...-+ ...+.++++++|.|+.+     .|+||+++++++++.++++++++
T Consensus        13 i~~g~~td~YF~~t~~il~~-~~~~~~~~~~~~~R~~~-----~VlaGleea~~ll~~l~~~~~~~   72 (352)
T PRK07188         13 IGEGWYSAVYFLKTREIIEK-FNPNNIVTMQFFQRREN-----AVLCGTDEVIALLKTFAKDPSKL   72 (352)
T ss_pred             HhcCchhHHHHHHHHHHHHH-hCCCCeEEEEEEEeCCC-----eEEecHHHHHHHHHHcCCCccce
Confidence            44567899998755445444 44577899999998644     99999999999999999987644

>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B

Probab=95.35  E-value=0.03  Score=43.70  Aligned_cols=49  Identities=22%  Similarity=0.433  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcC
Q psy13801         25 CTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENF   78 (88)
Q Consensus        25 lTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~   78 (88)
                      .||-|=.--- --++...++..+++++|.|+.|    |.|+||++.++++++.+
T Consensus         3 ~~~~yf~~t~-~~~~~~~~~~~~~~~i~~r~~~----~~v~aG~~~~~~~~~~~   51 (302)
T cd01571           3 FTDVYFLRTR-KILEKKGPNPTVTMEFTQRSLP----WAVLCGLEEVLALLEGL   51 (302)
T ss_pred             chHHHHHHHH-HHHHHhCCCCeEEEEEEEEcCc----hHHHhhHHHHHHHHhCC
Confidence            3555543333 3445466788899999999999    99999999999999875

Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	88
2f7f_A	494	Crystal Structure Of Enterococcus Faecalis Putative		7e-12

>pdb|2F7F|A Chain A, Crystal Structure Of Enterococcus Faecalis Putative Nicotinate Phosphoribosyltransferase, New York Structural Genomics Consortium Length = 494

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
          L TD+YQI M   YW+ G+   +AVF+ +FR+ PF   + IFAGLE  + +LEN  +++S
Sbjct: 12 LHTDMYQINMMQTYWELGRADLHAVFECYFREMPFNHGYAIFAGLERLVNYLENLTFTES 71

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	88
2f7f_A	494	Nicotinate phosphoribosyltransferase, putative; st	1e-31
2i14_A	395	Nicotinate-nucleotide pyrophosphorylase; ligand bi	3e-24
1vlp_A	441	Naprtase, nicotinate phosphoribosyltransferase; st	2e-20
3os4_A	407	Naprtase, nicotinate phosphoribosyltransferase; st	4e-19
1ybe_A	449	Naprtase, nicotinate phosphoribosyltransferase; st	4e-17
1yir_A	408	Naprtase 2, nicotinate phosphoribosyltransferase 2	2e-16
2im5_A	394	Nicotinate phosphoribosyltransferase; structural g	4e-15
2i1o_A	398	Nicotinate phosphoribosyltransferase; ZIN ION, zin	4e-12
3dhf_A	484	Nicotinamide phosphoribosyltransferase; NMPRTASE,	2e-10

>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1 Length = 494

 Score =  114 bits (286), Expect = 1e-31
 Identities = 27/60 (45%), Positives = 40/60 (66%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
          L TD+YQI M   YW+ G+   +AVF+ +FR+ PF   + IFAGLE  + +LEN  +++S
Sbjct: 12 LHTDMYQINMMQTYWELGRADLHAVFECYFREMPFNHGYAIFAGLERLVNYLENLTFTES 71

>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1 Length = 395

 Score = 92.7 bits (231), Expect = 3e-24
 Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 2/63 (3%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYS-D 82
            TD+Y +                + D+     P    + +  G+EE  + LE    +  
Sbjct: 22 KTTDVYFLRTKKILEVKNI-RKKVLADVTTTSLPNNWRWGVLVGVEEVAKLLEGIPVNVY 80

Query: 83 SVP 85
          ++P
Sbjct: 81 AMP 83

>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, joint center for structural genomics; HET: MSE MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2 d.41.2.2 Length = 441

 Score = 82.5 bits (204), Expect = 2e-20
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
          L TD+Y+ITM  A + +        +    R +           L+E   +L N R+++ 
Sbjct: 22 LDTDMYKITMHAAVFTNFP-DVTVTYKYTNRSSQLTFNKEAINWLKEQFSYLGNLRFTEE 80

>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia pestis} Length = 407

 Score = 78.6 bits (194), Expect = 4e-19
 Identities = 8/60 (13%), Positives = 19/60 (31%), Gaps = 3/60 (5%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
          L TD Y++ M  A +   +       +   R +   G +     +   +  +     +  
Sbjct: 13 LDTDAYKLHMQQAVFHHYR-HITVAAEFRCRSDELLGVY--ADEIRHQVTLMGQLALTSD 69

>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2 d.41.2.2 Length = 449

 Score = 73.0 bits (179), Expect = 4e-17
 Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 2/61 (3%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFR-QNPFQGEFTIFAGLEECIRFLENFRYSD 82
          + TD Y++ M    WK      +A F L  R +     E      L E +      R S 
Sbjct: 32 IDTDFYKLLMLQMIWKLYP-EVDATFSLINRTKTVRLAEEIDEMELREQLDHARTLRLSK 90

Query: 83 S 83
           
Sbjct: 91 K 91

>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural genomics, protein structure initiative, hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa} SCOP: c.1.17.2 d.41.2.2 Length = 408

 Score = 70.8 bits (174), Expect = 2e-16
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
          L TD Y++TM  A   +        ++   R       +     + E + +L     SD 
Sbjct: 17 LDTDFYKLTMMQAVLHNYP-NAEVEWEFRCRNQEDLRLY--LPAIREQLEYLAGLAISDE 73

>2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.20A {Porphyromonas gingivalis} Length = 394

 Score = 67.5 bits (165), Expect = 4e-15
 Identities = 15/60 (25%), Positives = 19/60 (31%), Gaps = 2/60 (3%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
          L TDLY+ T  YAY K         F    R N           +   IR +     +  
Sbjct: 8  LDTDLYKFTTGYAYAKLFPRAY-GEFRFIDR-NRQGFTEEFAELVRGEIRAMAALSLTRD 65

>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A Length = 398

 Score = 59.3 bits (144), Expect = 4e-12
 Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 4/63 (6%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYS-D 82
          L +D+Y      A             +           +  F GL+E ++ LE       
Sbjct: 22 LASDVYFERTISAIGDKCN-DLRVAMEATVSGPL--DTWINFTGLDEVLKLLEGLDVDLY 78

Query: 83 SVP 85
          ++P
Sbjct: 79 AIP 81

>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A* Length = 484

 Score = 54.3 bits (130), Expect = 2e-10
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 12/69 (17%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPF--------QGEFTIFAGLEECI-RF 74
          L TD Y++T    Y  +   T         R+           + E T+F GL+  + ++
Sbjct: 13 LATDSYKVTHYKQYPPN---TSKVYSYFECREKKTENSKLRKVKYEETVFYGLQYILNKY 69

Query: 75 LENFRYSDS 83
          L+    +  
Sbjct: 70 LKGKVVTKE 78

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	88
4hl7_A	446	Naprtase, nicotinate phosphoribosyltransferase; st	99.78
3os4_A	407	Naprtase, nicotinate phosphoribosyltransferase; st	99.76
2f7f_A	494	Nicotinate phosphoribosyltransferase, putative; st	99.73
1yir_A	408	Naprtase 2, nicotinate phosphoribosyltransferase 2	99.72
1ybe_A	449	Naprtase, nicotinate phosphoribosyltransferase; st	99.68
2im5_A	394	Nicotinate phosphoribosyltransferase; structural g	99.66
1vlp_A	441	Naprtase, nicotinate phosphoribosyltransferase; st	99.65
2i14_A	395	Nicotinate-nucleotide pyrophosphorylase; ligand bi	99.48
3dhf_A	484	Nicotinamide phosphoribosyltransferase; NMPRTASE,	99.38
2i1o_A	398	Nicotinate phosphoribosyltransferase; ZIN ION, zin	99.31
2b7n_A	273	Probable nicotinate-nucleotide pyrophosphorylase;	92.18
3c2e_A	294	Nicotinate-nucleotide pyrophosphorylase; qprtase,	91.04
2jbm_A	299	Nicotinate-nucleotide pyrophosphorylase; NAD, enzy	91.02

>4hl7_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative; 1.80A {Vibrio cholerae}

Probab=99.78  E-value=1.1e-20  Score=152.65  Aligned_cols=64  Identities=22%  Similarity=0.236  Sum_probs=59.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801         20 IMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSVPN   86 (88)
Q Consensus        20 ~~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs~edI~   86 (88)
                      +.++|+||+|||||+|+||+.+ ++.+++||+|+|++|++|+|+  |||+++|++|++||||++||+
T Consensus        13 I~s~L~TDlYkltM~qa~~~~~-~~~~v~fe~f~R~~p~~~~~~--agL~~~l~~L~~l~ft~eei~   76 (446)
T 4hl7_A           13 IRSLLDLDAYKINMMQAIHHFY-PDVSVRYELIVRSEEDASGLL--DAIRQEIAHLGTLRFSDADIH   76 (446)
T ss_dssp             SCSTTSSBHHHHHHHHHHHHHC-TTCEEEEEEEEESCTTTHHHH--HHHHHHHHHGGGCCCCHHHHH
T ss_pred             hchhHHHHHHHHHHHHHHHHhC-CCCeEEEEEEECCCCCchhHH--HHHHHHHHHHHhCCCCHHHHH
Confidence            4578999999999999999998 588999999999999999995  999999999999999999975

>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia pestis}

Probab=99.76  E-value=7.4e-20  Score=146.11  Aligned_cols=64  Identities=13%  Similarity=0.191  Sum_probs=57.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801         20 IMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSVPN   86 (88)
Q Consensus        20 ~~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs~edI~   86 (88)
                      +.+.|.||+||+||+|+||+++. +.+++||+|+|++|+.|+|  +|||+++|++|++|||+++||+
T Consensus         9 i~s~L~TDlY~ltM~~a~~~~~~-~~~v~fe~f~R~~~~~~~~--~agl~~~l~~l~~l~ft~~ei~   72 (407)
T 3os4_A            9 LTSLLDTDAYKLHMQQAVFHHYR-HITVAAEFRCRSDELLGVY--ADEIRHQVTLMGQLALTSDEFI   72 (407)
T ss_dssp             CCCTTSSBHHHHHHHHHHHHHCT-TCEEEEEEEECSSCCCGGG--HHHHHHHHHHHTTCCCCHHHHH
T ss_pred             hccchhhhhHHHHHHHHHHHhCC-CCeEEEEEEEcCCCchhhH--HHHHHHHHHHHHhCCCCHHHHH
Confidence            34567799999999999999987 8889999999999977766  4999999999999999999875

>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1

Probab=99.73  E-value=6.2e-19  Score=143.06  Aligned_cols=65  Identities=42%  Similarity=0.817  Sum_probs=62.4

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801         22 FWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSVPN   86 (88)
Q Consensus        22 ~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs~edI~   86 (88)
                      +.|+||+|++||+++||+.|.++.+++|++|+|++|++++|+|+|||+++++++++++|+++||+
T Consensus        10 ~~L~TD~Ykltm~~~~~~~g~~~~~~~f~~~~R~~p~~~~~~v~aGl~~~l~~l~~l~ft~~ei~   74 (494)
T 2f7f_A           10 LTLHTDMYQINMMQTYWELGRADLHAVFECYFREMPFNHGYAIFAGLERLVNYLENLTFTESDIA   74 (494)
T ss_dssp             STTCSCHHHHHHHHHHHHTTCTTCEEEEEEECSSCGGGCSCEECCCHHHHHHHHHTCCCCHHHHH
T ss_pred             cchhcchhHHHHHHHHHHhCCCCCEEEEEEEECCCCCCCceEehHhHHHHHHHHHhCCCCHHHHH
Confidence            56999999999999999999999999999999999999999999999999999999999999875

>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural genomics, protein structure initiative, hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa} SCOP: c.1.17.2 d.41.2.2

Probab=99.72  E-value=6.4e-19  Score=140.06  Aligned_cols=73  Identities=21%  Similarity=0.259  Sum_probs=61.6

Q ss_pred             ccccccccccc-hhhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCC-CceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801          9 SMEASAVNMLC-IMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQ-GEFTIFAGLEECIRFLENFRYSDSVPN   86 (88)
Q Consensus         9 ~~~~~~~~~~~-~~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~-g~f~V~AGLe~vl~~l~n~rFs~edI~   86 (88)
                      ||.++.. ++| +.+.|.||+|++||+|+||+.+. +.+++|++|+|+ ||+ ++|  +|||+++|++|++++|+++||+
T Consensus         2 ~~~~~~~-~~~iI~~~L~TD~YkltM~~~~~~~~~-~~~~~f~~~~R~-~~~~~~~--~~GL~~~l~~l~~~~ft~~ei~   76 (408)
T 1yir_A            2 SLAESAF-SERIVQNLLDTDFYKLTMMQAVLHNYP-NAEVEWEFRCRN-QEDLRLY--LPAIREQLEYLAGLAISDEQLA   76 (408)
T ss_dssp             -CCCBSC-CSCSSCSTTSSBHHHHHHHHHHHHHCT-TCEEEEEEEETT-CCCCGGG--HHHHHHHHHHHHHCCCCHHHHH
T ss_pred             CCChhhh-cchHHHhHHHHHHHHHHHHHHHHHhCC-CCEEEEEEEecC-CCCcccH--HHHHHHHHHHHHhCCCCHHHHH
Confidence            5555554 223 44567899999999999999987 888999999999 997 778  8999999999999999999985

>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2 d.41.2.2

Probab=99.68  E-value=3e-18  Score=137.89  Aligned_cols=66  Identities=23%  Similarity=0.236  Sum_probs=61.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCC-CCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801         20 IMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPF-QGEFTIFAGLEECIRFLENFRYSDSVPN   86 (88)
Q Consensus        20 ~~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf-~g~f~V~AGLe~vl~~l~n~rFs~edI~   86 (88)
                      +.+.|.||+|++||+|+||+.+.+. +++|++|+|++|+ +++|+|+|||+++|++|++++|+++||+
T Consensus        28 i~s~L~TD~YkltM~~~~~~~~p~~-~v~f~~~~R~~p~~~~~~~v~aGL~~~l~~l~~~~ft~eei~   94 (449)
T 1ybe_A           28 VRSLIDTDFYKLLMLQMIWKLYPEV-DATFSLINRTKTVRLAEEIDEMELREQLDHARTLRLSKKENI   94 (449)
T ss_dssp             CCCTTCSBHHHHHHHHHHHHHCTTC-BEEEEEEESCCSSCSTTTSCHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHhCCCC-eEEEEEEECCCCccCcchhHHHHHHHHHHHHHhCCCCHHHHH
Confidence            4467999999999999999998755 5999999999999 8999999999999999999999999875

>2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.20A {Porphyromonas gingivalis}

Probab=99.66  E-value=5.5e-18  Score=134.18  Aligned_cols=61  Identities=25%  Similarity=0.238  Sum_probs=56.1

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCce-E-eeechHHHHHHHhcCCCCCCCCC
Q psy13801         22 FWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEF-T-IFAGLEECIRFLENFRYSDSVPN   86 (88)
Q Consensus        22 ~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f-~-V~AGLe~vl~~l~n~rFs~edI~   86 (88)
                      +.|.||+|++||+|+||+.+. +.+++|++|+|+ |+  +| . |++||+++|++|++++|+++||+
T Consensus         6 ~~L~TD~Ykltm~~~~~~~~~-~~~v~f~~~~R~-~~--~~~~~v~~gL~~~l~~l~~~~ft~~ei~   68 (394)
T 2im5_A            6 SILDTDLYKFTTGYAYAKLFP-RAYGEFRFIDRN-RQ--GFTEEFAELVRGEIRAMAALSLTRDEKE   68 (394)
T ss_dssp             CTTCSBHHHHHHHHHHHHHCT-TCEEEEEEEETT-CC--CCCHHHHHHHHHHHHHGGGCCCCHHHHH
T ss_pred             hhHHHHhhHHHHHHHHHHhCC-CCEEEEEEEeCC-CC--chhhHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            457799999999999999998 889999999999 76  57 6 89999999999999999999985

>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, joint center for structural genomics; HET: MSE MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2 d.41.2.2

Probab=99.65  E-value=9.6e-18  Score=134.66  Aligned_cols=64  Identities=25%  Similarity=0.303  Sum_probs=58.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCce--EeeechHHHHHHHhcCCCCCCCCC
Q psy13801         20 IMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEF--TIFAGLEECIRFLENFRYSDSVPN   86 (88)
Q Consensus        20 ~~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f--~V~AGLe~vl~~l~n~rFs~edI~   86 (88)
                      +.+.|.||+|++||+|+||+.+.+ .+++|++|+|+ |++ +|  .|++||+++|++|++++|+++||+
T Consensus        18 i~s~L~TD~YkltM~~a~~~~~~~-~~~~f~~~~R~-p~~-~~~~~v~~GL~~~l~~l~~l~ft~eei~   83 (441)
T 1vlp_A           18 IKSLLDTDMYKITMHAAVFTNFPD-VTVTYKYTNRS-SQL-TFNKEAINWLKEQFSYLGNLRFTEEEIE   83 (441)
T ss_dssp             CCCTTSSBHHHHHHHHHHHHHCTT-CEEEEEEEESC-TTC-CBCHHHHHHHHHHHHHGGGCCCCHHHHH
T ss_pred             hhhhhhhHHHHHHHHHHHHHhCCC-CEEEEEEEEeC-CCc-cchHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence            556799999999999999999886 56999999988 877 89  899999999999999999999985

>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1

Probab=99.48  E-value=1.8e-14  Score=113.86  Aligned_cols=63  Identities=19%  Similarity=0.163  Sum_probs=58.6

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCC
Q psy13801         16 NMLCIMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFR   79 (88)
Q Consensus        16 ~~~~~~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~r   79 (88)
                      +++.+..+|.||+|++||+++||+.|. +.+++|++|+|++|++++|.|+||+++++++++++.
T Consensus        14 ~~~~I~~~L~tD~Y~~tm~~~~~~~g~-~~~~~~~~~~R~~p~~~~~~v~aGl~~~~~~l~~~~   76 (395)
T 2i14_A           14 NEDEIKAGKTTDVYFLRTKKILEVKNI-RKKVLADVTTTSLPNNWRWGVLVGVEEVAKLLEGIP   76 (395)
T ss_dssp             CHHHHHHTTTSBHHHHHHHHHHHHTTC-CCEEEEEEECSCCGGGCSCEECCCHHHHHHHHTTSS
T ss_pred             CHHHHHHHHHhhchHHHHHHHHHHhCC-CCeEEEEEEEcCCCCCCCceEeccHHHHHHHHhCCC
Confidence            566688899999999999999999998 889999999999999999999999999999999753

>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A*

Probab=99.38  E-value=1.4e-14  Score=117.84  Aligned_cols=61  Identities=23%  Similarity=0.321  Sum_probs=53.2

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCC---------CCCceEeeechHHHH-HHHhcCCCCCCCCC
Q psy13801         22 FWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNP---------FQGEFTIFAGLEECI-RFLENFRYSDSVPN   86 (88)
Q Consensus        22 ~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~P---------f~g~f~V~AGLe~vl-~~l~n~rFs~edI~   86 (88)
                      ..|+||+|++||.+.|.+    +.+++|+.|+||.|         |+++|+|+|||+++| +||++++|+++||+
T Consensus        11 ~~L~tD~YK~th~~~Yp~----~~~~v~s~f~~R~~~~~~~~~~~~~~~~~v~~GL~~~l~~~l~~~~ft~~di~   81 (484)
T 3dhf_A           11 ILLATDSYKVTHYKQYPP----NTSKVYSYFECREKKTENSKLRKVKYEETVFYGLQYILNKYLKGKVVTKEKIQ   81 (484)
T ss_dssp             GGGSSBGGGGGGGGTSCT----TEEEEEEEEEECC------------CCEEECCCHHHHHHHHTSSCCCCHHHHH
T ss_pred             hhhhhHhHHHHHHHhccC----CCeEEEEEEEEcCCCccccccccccCCeeeeHHHHHHHHHHHHhCCCCHHHHH
Confidence            479999999999999953    44799999999998         388999999999999 89999999999985

>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A

Probab=99.31  E-value=5.7e-13  Score=105.52  Aligned_cols=61  Identities=18%  Similarity=0.145  Sum_probs=56.3

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCC
Q psy13801         16 NMLCIMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFR   79 (88)
Q Consensus        16 ~~~~~~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~r   79 (88)
                      |+..+..+|.||+|++||+++||+.|. +.+++|++|+|++|+  +|.|+||+++++++++++.
T Consensus        14 ~~~~I~~~L~tD~Y~~tm~~~~~~~~~-~~~~~~~~~~R~~p~--~~~v~aGl~~~~~~l~~~~   74 (398)
T 2i1o_A           14 SDEDIKKGLASDVYFERTISAIGDKCN-DLRVAMEATVSGPLD--TWINFTGLDEVLKLLEGLD   74 (398)
T ss_dssp             CHHHHHHTCSSCTHHHHHHHHHGGGGG-GCEEEEEEEECSCCS--SCEECCCHHHHHHHHTTSS
T ss_pred             CHHHHHHHHHhhhhHHHHHHHHHHhCC-CCeEEEEEEECCCCC--cceEEcCHHHHHHHHhhCC
Confidence            566778899999999999999999988 888999999999998  8999999999999999754

>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*

Probab=92.18  E-value=0.13  Score=38.26  Aligned_cols=31  Identities=19%  Similarity=0.091  Sum_probs=27.7

Q ss_pred             CCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCC
Q psy13801         43 VTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFR   79 (88)
Q Consensus        43 ~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~r   79 (88)
                      .+.+++|++|.|+      +.|+||++.+.+.++++.
T Consensus        27 ~~~~~~~~~~~r~------~~v~aG~~~~~~~~~~~~   57 (273)
T 2b7n_A           27 KDFKATAFVRAKQ------EGVFSGEKYALELLEMTG   57 (273)
T ss_dssp             CCCEEEEEEEESS------CEECCCHHHHHHHHHHTT
T ss_pred             CCCeEEEEEEEcC------CEEEEcHHHHHHHHHHCC
Confidence            4678999999997      699999999999999875

>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*

Probab=91.04  E-value=0.18  Score=38.09  Aligned_cols=30  Identities=13%  Similarity=0.226  Sum_probs=27.2

Q ss_pred             CCcEEEEeecccCCCCCceEeeechHHHHHHHhcCC
Q psy13801         44 TDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFR   79 (88)
Q Consensus        44 ~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~r   79 (88)
                      +.+++|++|.|+      +.|+||++.+.+.++++.
T Consensus        37 ~~~~~~~~~~r~------~~v~aG~~~~~~~~~~~~   66 (294)
T 3c2e_A           37 SDLKEANLYCKQ------DGMLCGVPFAQEVFNQCE   66 (294)
T ss_dssp             SCEEEEEEEECS------SEECCCHHHHHHHHHHTT
T ss_pred             CCeEEEEEEECC------CEEEEcHHHHHHHHHHcC
Confidence            668999999997      599999999999999875

>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A

Probab=91.02  E-value=0.19  Score=38.08  Aligned_cols=30  Identities=10%  Similarity=0.101  Sum_probs=27.0

Q ss_pred             CCcEEEEeecccCCCCCceEeeechHHHHHHHhcCC
Q psy13801         44 TDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFR   79 (88)
Q Consensus        44 ~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~r   79 (88)
                      +.+++|++|.|+      +.|+||++.+.+.++++.
T Consensus        41 ~~~~~~~~~~r~------~~v~aG~~~~~~~~~~~~   70 (299)
T 2jbm_A           41 AGPSQAALWAKS------PGVLAGQPFFDAIFTQLN   70 (299)
T ss_dssp             SCEEEEEEEECS------CEECCCHHHHHHHHHHTT
T ss_pred             CCeEEEEEEEcC------CEEEEcHHHHHHHHHHcC
Confidence            667999999997      599999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	88
d2f7fa2	137	d.41.2.1 (A:4-140) Putative nicotinate phosphoribo	5e-22
d1vlpa1	149	d.41.2.2 (A:1-149) Nicotinate phosphoribosyltransf	2e-19
d1ybea2	160	d.41.2.2 (A:8-167) Nicotinate phosphoribosyltransf	5e-17
d1yira2	141	d.41.2.2 (A:4-144) Nicotinate phosphoribosyltransf	6e-16
d2i14a2	110	d.41.2.1 (A:1-110) Nicotinate-nucleotide pyrophosp	5e-14
d1ytda2	119	d.41.2.1 (A:1-119) Nicotinate phosphoribosyltransf	9e-13

>d2f7fa2 d.41.2.1 (A:4-140) Putative nicotinate phosphoribosyltransferase EF2626 {Enterococcus faecalis [TaxId: 1351]} Length = 137

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Putative nicotinate phosphoribosyltransferase EF2626
species: Enterococcus faecalis [TaxId: 1351]

 Score = 81.0 bits (200), Expect = 5e-22
 Identities = 27/60 (45%), Positives = 40/60 (66%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
          L TD+YQI M   YW+ G+   +AVF+ +FR+ PF   + IFAGLE  + +LEN  +++S
Sbjct: 9  LHTDMYQINMMQTYWELGRADLHAVFECYFREMPFNHGYAIFAGLERLVNYLENLTFTES 68

>d1vlpa1 d.41.2.2 (A:1-149) Nicotinate phosphoribosyltransferase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: Monomeric nicotinate phosphoribosyltransferase N-terminal domain-like
domain: Nicotinate phosphoribosyltransferase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.8 bits (184), Expect = 2e-19
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
          L TD+Y+ITM  A + +        +    R +           L+E   +L N R+++ 
Sbjct: 10 LDTDMYKITMHAAVFTNFP-DVTVTYKYTNRSSQLTFNKEAINWLKEQFSYLGNLRFTEE 68

>d1ybea2 d.41.2.2 (A:8-167) Nicotinate phosphoribosyltransferase, N-terminal domain {Agrobacterium tumefaciens [TaxId: 358]} Length = 160

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: Monomeric nicotinate phosphoribosyltransferase N-terminal domain-like
domain: Nicotinate phosphoribosyltransferase, N-terminal domain
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 68.7 bits (168), Expect = 5e-17
 Identities = 16/61 (26%), Positives = 20/61 (32%), Gaps = 2/61 (3%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNP-FQGEFTIFAGLEECIRFLENFRYSD 82
          + TD Y++ M    WK     D A F L  R       E      L E +      R S 
Sbjct: 25 IDTDFYKLLMLQMIWKLYPEVD-ATFSLINRTKTVRLAEEIDEMELREQLDHARTLRLSK 83

Query: 83 S 83
           
Sbjct: 84 K 84

>d1yira2 d.41.2.2 (A:4-144) Nicotinate phosphoribosyltransferase, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: Monomeric nicotinate phosphoribosyltransferase N-terminal domain-like
domain: Nicotinate phosphoribosyltransferase, N-terminal domain
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 65.5 bits (160), Expect = 6e-16
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
          L TD Y++TM  A   +        ++   R       +     + E + +L     SD 
Sbjct: 14 LDTDFYKLTMMQAVLHNYP-NAEVEWEFRCRNQEDLRLY--LPAIREQLEYLAGLAISDE 70

>d2i14a2 d.41.2.1 (A:1-110) Nicotinate-nucleotide pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId: 2261]} Length = 110

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Nicotinate-nucleotide pyrophosphorylase PF1904
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 59.8 bits (145), Expect = 5e-14
 Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 1/58 (1%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYS 81
            TD+Y +           +    + D+     P    + +  G+EE  + LE    +
Sbjct: 16 KTTDVYFLRTKKILEV-KNIRKKVLADVTTTSLPNNWRWGVLVGVEEVAKLLEGIPVN 72

>d1ytda2 d.41.2.1 (A:1-119) Nicotinate phosphoribosyltransferase Ta1145 {Thermoplasma acidophilum [TaxId: 2303]} Length = 119

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Nicotinate phosphoribosyltransferase Ta1145
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 56.7 bits (137), Expect = 9e-13
 Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 3/57 (5%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRY 80
          L +D+Y      A        D  V        P    +  F GL+E ++ LE    
Sbjct: 16 LASDVYFERTISAIGDKCN--DLRVAMEATVSGP-LDTWINFTGLDEVLKLLEGLDV 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	88
d1vlpa1	149	Nicotinate phosphoribosyltransferase, N-terminal d	99.92
d2f7fa2	137	Putative nicotinate phosphoribosyltransferase EF26	99.91
d1ybea2	160	Nicotinate phosphoribosyltransferase, N-terminal d	99.88
d1yira2	141	Nicotinate phosphoribosyltransferase, N-terminal d	99.85
d2i14a2	110	Nicotinate-nucleotide pyrophosphorylase PF1904 {Py	99.77
d1ytda2	119	Nicotinate phosphoribosyltransferase Ta1145 {Therm	99.67

>d1vlpa1 d.41.2.2 (A:1-149) Nicotinate phosphoribosyltransferase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: Monomeric nicotinate phosphoribosyltransferase N-terminal domain-like
domain: Nicotinate phosphoribosyltransferase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=5.9e-27  Score=164.34  Aligned_cols=68  Identities=21%  Similarity=0.233  Sum_probs=61.6

Q ss_pred             cchhhHHH-HHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801         18 LCIMFWLC-TDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSVPN   86 (88)
Q Consensus        18 ~~~~~~Ll-TDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs~edI~   86 (88)
                      .|++.+|+ ||+||+||+|+||+.+ ++.+|+|++|+|++|++|+|.|+|||+++|++|++|||+++||+
T Consensus         3 ~pii~SlLdTDlYklTM~qa~~~~~-~~~~a~f~~~~R~~p~~~~~~~~~gl~~~i~~l~~lrFt~eel~   71 (149)
T d1vlpa1           3 EPVIKSLLDTDMYKITMHAAVFTNF-PDVTVTYKYTNRSSQLTFNKEAINWLKEQFSYLGNLRFTEEEIE   71 (149)
T ss_dssp             CCSCCCTTSSBHHHHHHHHHHHHHC-TTCEEEEEEEESCTTCCBCHHHHHHHHHHHHHGGGCCCCHHHHH
T ss_pred             CcccccchhhHHHHHHHHHHHHHhC-CCCeEEEEEEEcCCCCCccHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence            35555555 9999999999999964 78899999999999999999999999999999999999999875

>d2f7fa2 d.41.2.1 (A:4-140) Putative nicotinate phosphoribosyltransferase EF2626 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Putative nicotinate phosphoribosyltransferase EF2626
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.91  E-value=2.9e-26  Score=157.78  Aligned_cols=65  Identities=42%  Similarity=0.817  Sum_probs=62.7

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801         22 FWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSVPN   86 (88)
Q Consensus        22 ~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs~edI~   86 (88)
                      .+|.||+||+||+|+||+.|.++.+|+|++|+|++|++|+|+|+|||+++|++|+++||+++||+
T Consensus         7 ~~L~TD~YkltM~~a~~~~~~~~~~~~f~~~~R~~p~~~~~~i~~gL~~~l~~l~~l~ft~eei~   71 (137)
T d2f7fa2           7 LTLHTDMYQINMMQTYWELGRADLHAVFECYFREMPFNHGYAIFAGLERLVNYLENLTFTESDIA   71 (137)
T ss_dssp             STTCSCHHHHHHHHHHHHTTCTTCEEEEEEECSSCGGGCSCEECCCHHHHHHHHHTCCCCHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCCCceehHhhHHHHHHHHHhCCCCHHHHH
Confidence            46999999999999999999999999999999999999999999999999999999999999985

>d1ybea2 d.41.2.2 (A:8-167) Nicotinate phosphoribosyltransferase, N-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: Monomeric nicotinate phosphoribosyltransferase N-terminal domain-like
domain: Nicotinate phosphoribosyltransferase, N-terminal domain
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.88  E-value=9.6e-25  Score=154.62  Aligned_cols=68  Identities=25%  Similarity=0.198  Sum_probs=60.9

Q ss_pred             cchhhHHH-HHHHHHHHHHHHHHcCCCCCcEEEEeecccCC-CCCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801         18 LCIMFWLC-TDLYQITMAYAYWKSGKVTDNAVFDLFFRQNP-FQGEFTIFAGLEECIRFLENFRYSDSVPN   86 (88)
Q Consensus        18 ~~~~~~Ll-TDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~P-f~g~f~V~AGLe~vl~~l~n~rFs~edI~   86 (88)
                      .|++.+|| ||+||+||+||||+. .++.+|+|++|+|+.| ++|+|+++|||+++|++|++|||+++||+
T Consensus        18 ~piI~SlLdTDlYklTM~qa~~~~-~~~~~a~f~f~~R~~~~~~~~~~~~~gL~~~i~~l~~lrFt~eei~   87 (160)
T d1ybea2          18 DPIVRSLIDTDFYKLLMLQMIWKL-YPEVDATFSLINRTKTVRLAEEIDEMELREQLDHARTLRLSKKENI   87 (160)
T ss_dssp             CCSCCCTTCSBHHHHHHHHHHHHH-CTTCBEEEEEEESCCSSCSTTTSCHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             chhhccchhhHHHHHHHHHHHHHh-CCCCeEEEEEEECCCCccchhHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence            35555555 999999999999996 5788999999999988 78999999999999999999999999874

>d1yira2 d.41.2.2 (A:4-144) Nicotinate phosphoribosyltransferase, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: Monomeric nicotinate phosphoribosyltransferase N-terminal domain-like
domain: Nicotinate phosphoribosyltransferase, N-terminal domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.85  E-value=3.2e-23  Score=144.08  Aligned_cols=65  Identities=20%  Similarity=0.248  Sum_probs=57.9

Q ss_pred             chhhH-HHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801         19 CIMFW-LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSVPN   86 (88)
Q Consensus        19 ~~~~~-LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs~edI~   86 (88)
                      +++.+ |.||+||+||+|+||+.+ ++.+|+|++|+|++|++|+|  ++||+++|++|++|||+++||+
T Consensus         8 ~ii~SlLdTDlYklTM~qa~~~~~-~~~~a~f~~~~R~~p~~~~~--~~gl~~~i~~l~~lrFt~eei~   73 (141)
T d1yira2           8 RIVQNLLDTDFYKLTMMQAVLHNY-PNAEVEWEFRCRNQEDLRLY--LPAIREQLEYLAGLAISDEQLA   73 (141)
T ss_dssp             CSSCSTTSSBHHHHHHHHHHHHHC-TTCEEEEEEEETTCCCCGGG--HHHHHHHHHHHHHCCCCHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHhC-CCCeEEEEEEecCCcchhhH--HHHHHHHHHHHHhCCCCHHHHH
Confidence            34434 459999999999999965 78899999999999999999  4899999999999999999985

>d2i14a2 d.41.2.1 (A:1-110) Nicotinate-nucleotide pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Nicotinate-nucleotide pyrophosphorylase PF1904
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.77  E-value=7.3e-20  Score=122.93  Aligned_cols=64  Identities=17%  Similarity=0.140  Sum_probs=58.8

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCC
Q psy13801         17 MLCIMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYS   81 (88)
Q Consensus        17 ~~~~~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs   81 (88)
                      +..+..++.||.|+++|+++||+.|. +++++||+|+|++|++++|+|+|||++++++|++++|+
T Consensus         9 ~~~i~~g~~TD~Yfl~t~~il~~~g~-~~~v~fevf~R~~p~~~~~~v~aGl~evl~~l~~~~~~   72 (110)
T d2i14a2           9 EDEIKAGKTTDVYFLRTKKILEVKNI-RKKVLADVTTTSLPNNWRWGVLVGVEEVAKLLEGIPVN   72 (110)
T ss_dssp             HHHHHHTTTSBHHHHHHHHHHHHTTC-CCEEEEEEECSCCGGGCSCEECCCHHHHHHHHTTSSEE
T ss_pred             hHHhhcchhhHHHHHHHHHHHHhcCC-CCcEEEEEEEEeCCcccchHHHHHHHHHHHHhcCCceE
Confidence            34567789999999999999999886 67899999999999999999999999999999999985

>d1ytda2 d.41.2.1 (A:1-119) Nicotinate phosphoribosyltransferase Ta1145 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Nicotinate phosphoribosyltransferase Ta1145
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.67  E-value=1.2e-17  Score=112.89  Aligned_cols=61  Identities=18%  Similarity=0.176  Sum_probs=54.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCCC
Q psy13801         19 CIMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSD   82 (88)
Q Consensus        19 ~~~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs~   82 (88)
                      .+.++++||+|++||+++||+.|. +.+++|++|.|+.  +++|+|+|||++++++|+++||+-
T Consensus        11 ~I~~gl~TD~Y~l~m~~~~~~~g~-~~~v~~e~f~r~~--~~~~~v~aGlee~l~~l~~~~~~i   71 (119)
T d1ytda2          11 DIKKGLASDVYFERTISAIGDKCN-DLRVAMEATVSGP--LDTWINFTGLDEVLKLLEGLDVDL   71 (119)
T ss_dssp             HHHHTCSSCHHHHHHHHHHGGGGG-GCEEEEEEEECSC--CSSCEECCCHHHHHHHHTTSSEEE
T ss_pred             HHhhhhHHHHHHHHHHHHHHHhCC-CCeEEEEEEEecC--CCceehhhHHHHHHHHhhCCccEE
Confidence            466789999999999999999886 5679999988853  589999999999999999999853