Psyllid ID: psy13808
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 190 | 2.2.26 [Sep-21-2011] | |||||||
| Q0P4F7 | 606 | Acyl-CoA synthetase famil | yes | N/A | 0.747 | 0.234 | 0.383 | 1e-24 | |
| Q4R4Z9 | 618 | Acyl-CoA synthetase famil | N/A | N/A | 0.757 | 0.233 | 0.364 | 1e-22 | |
| Q8VCW8 | 615 | Acyl-CoA synthetase famil | yes | N/A | 0.747 | 0.230 | 0.382 | 1e-22 | |
| Q499N5 | 615 | Acyl-CoA synthetase famil | yes | N/A | 0.747 | 0.230 | 0.369 | 2e-22 | |
| Q96CM8 | 615 | Acyl-CoA synthetase famil | yes | N/A | 0.757 | 0.234 | 0.364 | 3e-22 | |
| Q17QJ1 | 615 | Acyl-CoA synthetase famil | yes | N/A | 0.778 | 0.240 | 0.358 | 3e-22 | |
| Q5R9G9 | 615 | Acyl-CoA synthetase famil | yes | N/A | 0.757 | 0.234 | 0.357 | 8e-22 | |
| O31826 | 549 | Putative acyl-CoA synthet | yes | N/A | 0.526 | 0.182 | 0.392 | 2e-16 | |
| O07610 | 513 | Long-chain-fatty-acid--Co | no | N/A | 0.468 | 0.173 | 0.362 | 3e-09 | |
| P94547 | 560 | Long-chain-fatty-acid--Co | no | N/A | 0.452 | 0.153 | 0.318 | 4e-07 |
| >sp|Q0P4F7|ACSF2_DANRE Acyl-CoA synthetase family member 2, mitochondrial OS=Danio rerio GN=acsf2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 113 bits (282), Expect = 1e-24, Method: Composition-based stats.
Identities = 56/146 (38%), Positives = 90/146 (61%), Gaps = 4/146 (2%)
Query: 42 PSAYKADALP---TKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQF 98
P K+ LP T + + + G+F L D+MQ +++++ + + K L C D INIQF
Sbjct: 196 PGGIKSSRLPDLHTVIVTDSQQPGSFLLKDLMQAGSSQHYQQLQDLQKKLVCDDPINIQF 255
Query: 99 TSGTTGHPKAAFLTHYNLINNSNFIGKRLEFD-KTDHKILLQVPMFHTFGTAMGILNAMN 157
TSGTTG PK A L+H+N++NN+ F G R+ ++ + + +I L VP++H FG+ G +
Sbjct: 256 TSGTTGKPKGATLSHHNIVNNAYFTGMRIGYNWRKNVRICLPVPLYHCFGSVGGGVIMAL 315
Query: 158 HGSTTVVPAPSFKPMDSLRAIAKEKC 183
+G+T + P+ + +LRAI KEKC
Sbjct: 316 YGTTVIFPSTGYDGRANLRAIEKEKC 341
|
Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation. Danio rerio (taxid: 7955) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: - |
| >sp|Q4R4Z9|ACSF2_MACFA Acyl-CoA synthetase family member 2, mitochondrial OS=Macaca fascicularis GN=ACSF2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 92/151 (60%), Gaps = 7/151 (4%)
Query: 39 NPRPSAYKADALPTKLTRLALRM---GTFRLSDIMQGAGPEYHRRREQ-ISKSLNCRDGI 94
N +P A K+ LP T +++ GT L +++ + H + Q I + L+C D I
Sbjct: 202 NAQPGALKSQRLPDLTTVISVDAPLPGTLLLDEVLAAGSTQQHLEQLQHIQQFLSCHDPI 261
Query: 95 NIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEF-DKTDHKI--LLQVPMFHTFGTAMG 151
NIQFTSGTTG PK A L+HYN++NNS+ +G+RL+ +KT ++ +L P++H G+ G
Sbjct: 262 NIQFTSGTTGSPKGATLSHYNIVNNSSILGERLKLHEKTPEQLRMILPSPLYHCLGSVGG 321
Query: 152 ILNAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
+ + +G+T ++ +P F +L AI++E+
Sbjct: 322 TMMCLMYGATLILASPVFNGKKALEAISRER 352
|
Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation. Macaca fascicularis (taxid: 9541) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q8VCW8|ACSF2_MOUSE Acyl-CoA synthetase family member 2, mitochondrial OS=Mus musculus GN=Acsf2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 93/149 (62%), Gaps = 7/149 (4%)
Query: 41 RPSAYKADALPTKLTRLALRM---GTFRLSDIMQGAGPEYHRRREQISKS-LNCRDGINI 96
+P A K++ LP T +++ GT L DI+ G E + + + ++ L+C D INI
Sbjct: 201 QPGALKSERLPDLTTVISVDAPLPGTLLLDDIVAAGGKEQNLAQLRYNQRFLSCYDPINI 260
Query: 97 QFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEF---DKTDHKILLQVPMFHTFGTAMGIL 153
QFTSGTTG+PK A L+H+N++NNS IG+RL+ + +++L P++H G+ G +
Sbjct: 261 QFTSGTTGNPKGATLSHHNIVNNSMLIGQRLKMPTKTAEELRLVLPSPLYHCLGSVGGTM 320
Query: 154 NAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
+M HG+T ++ +PSF +L AI++EK
Sbjct: 321 VSMMHGATLLLSSPSFNGKKALEAISREK 349
|
Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q499N5|ACSF2_RAT Acyl-CoA synthetase family member 2, mitochondrial OS=Rattus norvegicus GN=Acsf2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 93/149 (62%), Gaps = 7/149 (4%)
Query: 41 RPSAYKADALPTKLTRLALRM---GTFRLSDIMQGAGPEYHRRREQISKS-LNCRDGINI 96
+P A K++ LP T +++ GT L +++ G E + + + + L+C D INI
Sbjct: 201 QPGALKSERLPDLTTVISVDAPLPGTLLLDEVVAAGGKEQNLAQLRYHQGFLSCYDPINI 260
Query: 97 QFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEF---DKTDHKILLQVPMFHTFGTAMGIL 153
QFTSGTTG+PK A L+H+N++NNSN IG+RL+ + +++L P++H G+ G +
Sbjct: 261 QFTSGTTGNPKGATLSHHNIVNNSNLIGQRLKMPAKTAEELRMVLPCPLYHCLGSVGGTM 320
Query: 154 NAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
++ HG+T ++ +PSF +L AI++EK
Sbjct: 321 VSVVHGATLLLSSPSFNGKKALEAISREK 349
|
Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q96CM8|ACSF2_HUMAN Acyl-CoA synthetase family member 2, mitochondrial OS=Homo sapiens GN=ACSF2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 105 bits (261), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 91/151 (60%), Gaps = 7/151 (4%)
Query: 39 NPRPSAYKADALPTKLTRLALRM---GTFRLSDIMQGAGPEYHRRREQISKS-LNCRDGI 94
N +P A K+ LP T +++ GT L +++ H + Q ++ L+C D I
Sbjct: 199 NAQPGALKSQRLPDLTTVISVDAPLPGTLLLDEVVAAGSTRQHLDQLQYNQQFLSCHDPI 258
Query: 95 NIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEF-DKTDHKI--LLQVPMFHTFGTAMG 151
NIQFTSGTTG PK A L+HYN++NNSN +G+RL+ +KT ++ +L P++H G+ G
Sbjct: 259 NIQFTSGTTGSPKGATLSHYNIVNNSNILGERLKLHEKTPEQLRMILPNPLYHCLGSVAG 318
Query: 152 ILNAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
+ + +G+T ++ +P F +L AI++E+
Sbjct: 319 TMMCLMYGATLILASPIFNGKKALEAISRER 349
|
Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q17QJ1|ACSF2_BOVIN Acyl-CoA synthetase family member 2, mitochondrial OS=Bos taurus GN=ACSF2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 91/156 (58%), Gaps = 8/156 (5%)
Query: 41 RPSAYKADALPTKLTRLALRM---GTFRLSDIMQGAGPEYHRRR-EQISKSLNCRDGINI 96
+P A K+ LP T +++ GT L +++ E + R + L+C D INI
Sbjct: 201 QPGALKSQRLPDLTTVISVDAHLPGTLLLDEVVAAGSQEQNLTRLRHTQQFLSCHDPINI 260
Query: 97 QFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDK---TDHKILLQVPMFHTFGTAMGIL 153
QFTSGTTG PK A L+HYN++NN+N IG+RL + + +++L P++H G+ G +
Sbjct: 261 QFTSGTTGSPKGATLSHYNIVNNANMIGQRLRLHQKTPEESRVVLPSPLYHCLGSVGGTM 320
Query: 154 NAMNHGSTTVVPAPSFKPMDSLRAIAKEK-CMEYLT 188
++ HG T ++ +P F+ +L AI++E+ C Y T
Sbjct: 321 VSLMHGVTLILCSPVFEGKKTLEAISRERGCFLYGT 356
|
Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation. Bos taurus (taxid: 9913) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q5R9G9|ACSF2_PONAB Acyl-CoA synthetase family member 2, mitochondrial OS=Pongo abelii GN=ACSF2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 103 bits (257), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 90/151 (59%), Gaps = 7/151 (4%)
Query: 39 NPRPSAYKADALPTKLTRLALRM---GTFRLSDIMQGAGPEYHRRREQISKS-LNCRDGI 94
N +P K+ LP T +++ GT L +++ H + Q ++ L+C D I
Sbjct: 199 NAQPGGLKSQRLPDLTTVISVDAPLPGTLLLDEVVAAGSTRQHLDQLQYNQQFLSCHDPI 258
Query: 95 NIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEF-DKTDHKI--LLQVPMFHTFGTAMG 151
NIQFTSGTTG PK A L+HYN++NNSN +G+RL+ +KT ++ +L P++H G+ G
Sbjct: 259 NIQFTSGTTGSPKGATLSHYNIVNNSNMLGERLKLHEKTPEQLRMILPSPLYHCLGSVGG 318
Query: 152 ILNAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
+ + +G+T ++ +P F +L AI++E+
Sbjct: 319 TMMCLMYGATLILASPVFNGKKALEAISRER 349
|
Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation. Pongo abelii (taxid: 9601) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|O31826|YNGI_BACSU Putative acyl-CoA synthetase YngI OS=Bacillus subtilis (strain 168) GN=yngI PE=3 SV=1 | Back alignment and function description |
|---|
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 63/102 (61%), Gaps = 2/102 (1%)
Query: 82 EQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVP 141
E+ SL+ + IN+Q+TSGTTG PK LTH+N+INN+ I + + D ++ + VP
Sbjct: 181 EERMNSLDKDNVINMQYTSGTTGFPKGVMLTHFNVINNAANIAECMALTSQD-RMCIPVP 239
Query: 142 MFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
FH FG +G+L ++ G+ ++P F P+ L+ + KEKC
Sbjct: 240 FFHCFGCVLGVLACVSVGA-AMIPVQEFDPVTVLKTVEKEKC 280
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|O07610|LCFB_BACSU Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis (strain 168) GN=lcfB PE=2 SV=2 | Back alignment and function description |
|---|
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 92 DGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMG 151
D I +TSGTTG PK A LTH NL +N+N + L D+ D+ ++ +PMFH F +
Sbjct: 169 DTAVILYTSGTTGKPKGAMLTHQNLYSNANDVAGYLGMDERDN-VVCALPMFHVFCLTV- 226
Query: 152 ILNAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
+NA TV+ P F P + + +++
Sbjct: 227 CMNAPLMSGATVLIEPQFSPASVFKLVKQQQ 257
|
Involved in the degradation of long-chain fatty acids. Bacillus subtilis (strain 168) (taxid: 224308) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|P94547|LCFA_BACSU Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis (strain 168) GN=lcfA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRL-EFDKTDHKILLQVPMFHTFGTAMGILN 154
+Q+T GTTG PK LTH N++ N+ + + + K+L VP FH +G ++N
Sbjct: 211 LQYTGGTTGAPKGVMLTHQNILANTEMCAAWMYDVKEGAEKVLGIVPFFHVYGLT-AVMN 269
Query: 155 AMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
++ P F P+++L+ I K K
Sbjct: 270 YSIKLGFEMILLPKFDPLETLKIIDKHK 297
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 190 | ||||||
| 157106378 | 586 | AMP dependent coa ligase [Aedes aegypti] | 0.478 | 0.155 | 0.593 | 4e-27 | |
| 268561680 | 618 | C. briggsae CBR-ACS-2 protein [Caenorhab | 0.642 | 0.197 | 0.459 | 6e-27 | |
| 341889395 | 578 | hypothetical protein CAEBREN_26030 [Caen | 0.642 | 0.211 | 0.459 | 1e-26 | |
| 157130154 | 1017 | AMP dependent coa ligase [Aedes aegypti] | 0.478 | 0.089 | 0.582 | 2e-26 | |
| 170028427 | 582 | AMP dependent coa ligase [Culex quinquef | 0.642 | 0.209 | 0.467 | 2e-26 | |
| 308507281 | 618 | CRE-ACS-2 protein [Caenorhabditis remane | 0.642 | 0.197 | 0.442 | 4e-26 | |
| 328712423 | 580 | PREDICTED: acyl-CoA synthetase family me | 0.642 | 0.210 | 0.475 | 7e-26 | |
| 17560308 | 618 | Protein ACS-2 [Caenorhabditis elegans] g | 0.642 | 0.197 | 0.450 | 9e-26 | |
| 13475770 | 590 | AMP-binding protein [Mesorhizobium loti | 0.731 | 0.235 | 0.391 | 6e-25 | |
| 198418450 | 610 | PREDICTED: similar to acyl-CoA synthetas | 0.642 | 0.2 | 0.450 | 6e-25 |
| >gi|157106378|ref|XP_001649296.1| AMP dependent coa ligase [Aedes aegypti] gi|108868852|gb|EAT33077.1| AAEL014664-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 68/91 (74%)
Query: 93 GINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGI 152
G+NIQFTSGTTG PKAAF++HY +NN+ IG R EFD DH+I +Q P FH FG +GI
Sbjct: 227 GVNIQFTSGTTGQPKAAFMSHYGFVNNAIHIGHRNEFDLKDHRICVQTPFFHVFGIVIGI 286
Query: 153 LNAMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
+ AM++G+T V+P P FK +SL IAKEKC
Sbjct: 287 VGAMSYGTTLVLPGPGFKASESLETIAKEKC 317
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|268561680|ref|XP_002638388.1| C. briggsae CBR-ACS-2 protein [Caenorhabditis briggsae] | Back alignment and taxonomy information |
|---|
Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 80/122 (65%)
Query: 62 GTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSN 121
G + SD+M AG E + E++ + L + +N+QFTSGTTGHPK A LTH+ L NN+
Sbjct: 216 GAWVYSDLMNAAGTEERAKLEEMDRKLRPDEPVNMQFTSGTTGHPKGATLTHFGLNNNAY 275
Query: 122 FIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKE 181
F G RL +D+ DH+I + P++H FG A+G++NA+NHG T + P+ S+ D AI E
Sbjct: 276 FAGIRLGWDRDDHRICIPNPLYHCFGCAVGVINAVNHGQTVIFPSKSYHVPDIFEAIQNE 335
Query: 182 KC 183
KC
Sbjct: 336 KC 337
|
Source: Caenorhabditis briggsae Species: Caenorhabditis briggsae Genus: Caenorhabditis Family: Rhabditidae Order: Rhabditida Class: Chromadorea Phylum: Nematoda Superkingdom: Eukaryota |
| >gi|341889395|gb|EGT45330.1| hypothetical protein CAEBREN_26030 [Caenorhabditis brenneri] | Back alignment and taxonomy information |
|---|
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 79/122 (64%)
Query: 62 GTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSN 121
G + SD+M AG E + E + + L + +N+QFTSGTTGHPK A LTH+ L NN+
Sbjct: 215 GAWVYSDLMNAAGTEERAKLEDMDRKLRPDEPVNMQFTSGTTGHPKGATLTHFGLNNNAY 274
Query: 122 FIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKE 181
F G RL +D+ DH+I + P++H FG A+G++NA+NHG T + P+ S+ D AI E
Sbjct: 275 FAGIRLGWDREDHRICIPNPLYHCFGCAVGVINAVNHGQTVIFPSKSYHVPDIFEAIQNE 334
Query: 182 KC 183
KC
Sbjct: 335 KC 336
|
Source: Caenorhabditis brenneri Species: Caenorhabditis brenneri Genus: Caenorhabditis Family: Rhabditidae Order: Rhabditida Class: Chromadorea Phylum: Nematoda Superkingdom: Eukaryota |
| >gi|157130154|ref|XP_001661845.1| AMP dependent coa ligase [Aedes aegypti] gi|108872001|gb|EAT36226.1| AAEL011676-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 68/91 (74%)
Query: 93 GINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGI 152
G+NIQFTSGTTG PKAAF++HY +NN+ IG R EFD +H+I +Q P FH FG +GI
Sbjct: 258 GVNIQFTSGTTGQPKAAFMSHYGFVNNAIHIGHRNEFDLKEHRICVQTPFFHVFGIVIGI 317
Query: 153 LNAMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
+ AM++G+T V+P P FK +SL IAKEKC
Sbjct: 318 VGAMSYGTTLVLPGPGFKASESLETIAKEKC 348
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170028427|ref|XP_001842097.1| AMP dependent coa ligase [Culex quinquefasciatus] gi|167874252|gb|EDS37635.1| AMP dependent coa ligase [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 57/122 (46%), Positives = 78/122 (63%)
Query: 62 GTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSN 121
GT + D+ + E + E + ++ G+NIQFTSGTTG PKAA ++HY +NN
Sbjct: 198 GTVQYQDLFTLSSSEDQSKIESLQSQISPDSGVNIQFTSGTTGQPKAALMSHYGFVNNGI 257
Query: 122 FIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKE 181
IG R EF+ DH+I +Q P FH FG +GI+ AM++G+T V+P P FK +SL AI KE
Sbjct: 258 HIGFRNEFNLKDHRICVQTPFFHVFGMVIGIVAAMSYGTTLVLPGPGFKVAESLEAIDKE 317
Query: 182 KC 183
KC
Sbjct: 318 KC 319
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|308507281|ref|XP_003115823.1| CRE-ACS-2 protein [Caenorhabditis remanei] gi|308256358|gb|EFP00311.1| CRE-ACS-2 protein [Caenorhabditis remanei] | Back alignment and taxonomy information |
|---|
Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 80/122 (65%)
Query: 62 GTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSN 121
G + SD+M+ AG + + E + + L + +N+QFTSGTTGHPK A LTH+ L NN+
Sbjct: 216 GAWVYSDLMKAAGTDERAKLEDMDRKLRPDEPVNMQFTSGTTGHPKGATLTHFGLNNNAY 275
Query: 122 FIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKE 181
F G RL +D+ DH+I + P++H FG A+G++NA+NHG T + P+ S+ D AI E
Sbjct: 276 FAGIRLGWDREDHRICIPNPLYHCFGCAVGVINAVNHGQTVIFPSKSYHVPDIFEAIQNE 335
Query: 182 KC 183
+C
Sbjct: 336 RC 337
|
Source: Caenorhabditis remanei Species: Caenorhabditis remanei Genus: Caenorhabditis Family: Rhabditidae Order: Rhabditida Class: Chromadorea Phylum: Nematoda Superkingdom: Eukaryota |
| >gi|328712423|ref|XP_001947925.2| PREDICTED: acyl-CoA synthetase family member 2, mitochondrial-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 80/122 (65%)
Query: 62 GTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSN 121
G + D+ Q + ++I++ LN NIQFTSGTTG PK A LTH N++NNS
Sbjct: 188 GVIKYWDVCQSGTIKSTSYLKKINRELNPHAICNIQFTSGTTGAPKGACLTHNNVVNNSY 247
Query: 122 FIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKE 181
F KR+ + +H+ILLQVP FHTFGT +GI+ ++N GS ++PA +KP++S RAI E
Sbjct: 248 FYSKRMLLMEKEHRILLQVPFFHTFGTVVGIMASLNSGSALILPAFGYKPIESARAILAE 307
Query: 182 KC 183
KC
Sbjct: 308 KC 309
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|17560308|ref|NP_506869.1| Protein ACS-2 [Caenorhabditis elegans] gi|3876464|emb|CAB03012.1| Protein ACS-2 [Caenorhabditis elegans] | Back alignment and taxonomy information |
|---|
Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 78/122 (63%)
Query: 62 GTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSN 121
G + SD++ AG + E + + L + +N+QFTSGTTGHPK A LTH+ L NN+
Sbjct: 216 GAWVYSDLIHAAGSAERAKLEDMDRKLRPDEPVNMQFTSGTTGHPKGATLTHFGLNNNAY 275
Query: 122 FIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKE 181
F G RL +D+ DH+I + P++H FG A+G++NA+NHG T V P+ S+ D AI E
Sbjct: 276 FAGIRLGWDREDHRICIPNPLYHCFGCAVGVINAVNHGQTVVFPSKSYHVPDIFEAIQNE 335
Query: 182 KC 183
KC
Sbjct: 336 KC 337
|
Source: Caenorhabditis elegans Species: Caenorhabditis elegans Genus: Caenorhabditis Family: Rhabditidae Order: Rhabditida Class: Chromadorea Phylum: Nematoda Superkingdom: Eukaryota |
| >gi|13475770|ref|NP_107337.1| AMP-binding protein [Mesorhizobium loti MAFF303099] gi|14026526|dbj|BAB53123.1| long chain fatty acid acyl-CoA ligase [Mesorhizobium loti MAFF303099] | Back alignment and taxonomy information |
|---|
Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats.
Identities = 58/148 (39%), Positives = 88/148 (59%), Gaps = 9/148 (6%)
Query: 42 PSAYKADALPTKLTRLALRMG------TFRLSDIMQGAGPEYHRRREQISKSLNCRDGIN 95
P KA LP ++ +RMG F +D++ AG + H ++IS+ L D IN
Sbjct: 176 PGKLKAQKLPA--LKIVIRMGEDNSPGMFNFADVLAMAGRDEHDSLDRISEGLKPGDAIN 233
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
IQFTSGTTG PK A LTH+N++NN NF+ ++ D ++ + VP++H FG +MG +
Sbjct: 234 IQFTSGTTGAPKGATLTHHNIVNNGNFVTSAIKL-TVDDRLCIPVPLYHCFGMSMGTMGC 292
Query: 156 MNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
+ G+T V P F P +L+A+A+E+C
Sbjct: 293 VTKGATMVFPGEGFDPGATLKAVAQERC 320
|
Source: Mesorhizobium loti MAFF303099 Species: Mesorhizobium loti Genus: Mesorhizobium Family: Phyllobacteriaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|198418450|ref|XP_002124320.1| PREDICTED: similar to acyl-CoA synthetase family member 2 [Ciona intestinalis] | Back alignment and taxonomy information |
|---|
Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 71/122 (58%)
Query: 62 GTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSN 121
GT+R SD+M GP+ + SL D INIQFTSGTTGHPK A LTH+N+INN+
Sbjct: 226 GTYRFSDVMNAGGPKEIAQVHNCQSSLQMDDPINIQFTSGTTGHPKGATLTHHNIINNAL 285
Query: 122 FIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKE 181
IG R+ FD ++L QVP++H FG G L +G T V + P S+R + E
Sbjct: 286 LIGNRIGFDDDHDRVLCQVPLYHCFGMVAGTLCMAVYGQTMVFAVAGYDPAASVRTLIAE 345
Query: 182 KC 183
C
Sbjct: 346 NC 347
|
Source: Ciona intestinalis Species: Ciona intestinalis Genus: Ciona Family: Cionidae Order: Enterogona Class: Ascidiacea Phylum: Chordata Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 190 | ||||||
| WB|WBGene00009221 | 618 | acs-2 [Caenorhabditis elegans | 0.642 | 0.197 | 0.450 | 1.2e-25 | |
| UNIPROTKB|E1BS15 | 589 | ACSF2 "Uncharacterized protein | 0.763 | 0.246 | 0.364 | 2.2e-24 | |
| UNIPROTKB|E1BVI3 | 593 | ACSF2 "Uncharacterized protein | 0.763 | 0.244 | 0.364 | 2.2e-24 | |
| ZFIN|ZDB-GENE-060825-7 | 606 | acsf2 "acyl-CoA synthetase fam | 0.742 | 0.232 | 0.387 | 1.1e-23 | |
| FB|FBgn0031703 | 593 | CG12512 [Drosophila melanogast | 0.631 | 0.202 | 0.450 | 5.8e-23 | |
| UNIPROTKB|F1RT96 | 609 | ACSF2 "Uncharacterized protein | 0.747 | 0.233 | 0.389 | 1.7e-22 | |
| UNIPROTKB|B4DUF5 | 455 | ACSF2 "Acyl-CoA synthetase fam | 0.757 | 0.316 | 0.364 | 1.7e-22 | |
| MGI|MGI:2388287 | 615 | Acsf2 "acyl-CoA synthetase fam | 0.747 | 0.230 | 0.395 | 2.2e-22 | |
| UNIPROTKB|Q5LQG2 | 571 | SPO2528 "AMP-binding enzyme" [ | 0.636 | 0.211 | 0.409 | 2.4e-22 | |
| TIGR_CMR|SPO_2528 | 571 | SPO_2528 "AMP-binding enzyme" | 0.636 | 0.211 | 0.409 | 2.4e-22 |
| WB|WBGene00009221 acs-2 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 298 (110.0 bits), Expect = 1.2e-25, P = 1.2e-25
Identities = 55/122 (45%), Positives = 78/122 (63%)
Query: 62 GTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSN 121
G + SD++ AG + E + + L + +N+QFTSGTTGHPK A LTH+ L NN+
Sbjct: 216 GAWVYSDLIHAAGSAERAKLEDMDRKLRPDEPVNMQFTSGTTGHPKGATLTHFGLNNNAY 275
Query: 122 FIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKE 181
F G RL +D+ DH+I + P++H FG A+G++NA+NHG T V P+ S+ D AI E
Sbjct: 276 FAGIRLGWDREDHRICIPNPLYHCFGCAVGVINAVNHGQTVVFPSKSYHVPDIFEAIQNE 335
Query: 182 KC 183
KC
Sbjct: 336 KC 337
|
|
| UNIPROTKB|E1BS15 ACSF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 286 (105.7 bits), Expect = 2.2e-24, P = 2.2e-24
Identities = 54/148 (36%), Positives = 88/148 (59%)
Query: 39 NPRPSAYKADALPTKLTRLALRM---GTFRLSDIMQGAGPEYHRRREQISKSLNCRDGIN 95
N P K+ LP T + L GTF + ++MQ + ++ + ++L+C + +N
Sbjct: 177 NSSPGGIKSKRLPDLSTVIMLDSKLPGTFHMDEVMQAGDSSHMKQLRALQQTLSCNEPVN 236
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
IQFTSGTTG PK A L+H N++NN+N IG RL + D+++ + P++H + G + +
Sbjct: 237 IQFTSGTTGSPKGATLSHRNIVNNANLIGMRLGITEQDYRVCIPAPLYHCLASVGGCMVS 296
Query: 156 MNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
HGS+ V APSF+ +L A+++EKC
Sbjct: 297 ALHGSSCVFSAPSFEGKATLEAVSQEKC 324
|
|
| UNIPROTKB|E1BVI3 ACSF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 286 (105.7 bits), Expect = 2.2e-24, P = 2.2e-24
Identities = 54/148 (36%), Positives = 88/148 (59%)
Query: 39 NPRPSAYKADALPTKLTRLALRM---GTFRLSDIMQGAGPEYHRRREQISKSLNCRDGIN 95
N P K+ LP T + L GTF + ++MQ + ++ + ++L+C + +N
Sbjct: 177 NSSPGGIKSKRLPDLSTVIMLDSKLPGTFHMDEVMQAGDSSHMKQLRALQQTLSCNEPVN 236
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
IQFTSGTTG PK A L+H N++NN+N IG RL + D+++ + P++H + G + +
Sbjct: 237 IQFTSGTTGSPKGATLSHRNIVNNANLIGMRLGITEQDYRVCIPAPLYHCLASVGGCMVS 296
Query: 156 MNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
HGS+ V APSF+ +L A+++EKC
Sbjct: 297 ALHGSSCVFSAPSFEGKATLEAVSQEKC 324
|
|
| ZFIN|ZDB-GENE-060825-7 acsf2 "acyl-CoA synthetase family member 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 280 (103.6 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 57/147 (38%), Positives = 93/147 (63%)
Query: 42 PSAYKADALP---TKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQF 98
P K+ LP T + + + G+F L D+MQ +++++ + + K L C D INIQF
Sbjct: 196 PGGIKSSRLPDLHTVIVTDSQQPGSFLLKDLMQAGSSQHYQQLQDLQKKLVCDDPINIQF 255
Query: 99 TSGTTGHPKAAFLTHYNLINNSNFIGKRLEFD-KTDHKILLQVPMFHTFGTAMG-ILNAM 156
TSGTTG PK A L+H+N++NN+ F G R+ ++ + + +I L VP++H FG+ G ++ A+
Sbjct: 256 TSGTTGKPKGATLSHHNIVNNAYFTGMRIGYNWRKNVRICLPVPLYHCFGSVGGGVIMAL 315
Query: 157 NHGSTTVVPAPSFKPMDSLRAIAKEKC 183
+G+T + P+ + +LRAI KEKC
Sbjct: 316 -YGTTVIFPSTGYDGRANLRAIEKEKC 341
|
|
| FB|FBgn0031703 CG12512 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 273 (101.2 bits), Expect = 5.8e-23, P = 5.8e-23
Identities = 55/122 (45%), Positives = 72/122 (59%)
Query: 62 GTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSN 121
G R D + A ++ KS+ NIQFTSGTTG+PKAA LTH+N +NN
Sbjct: 201 GALRFDDFLDLASKSEREEVAKMQKSILPESACNIQFTSGTTGNPKAACLTHHNFVNNGI 260
Query: 122 FIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKE 181
+G R E + +I +QVPMFH FG + I+ A+ G+T V+PA F P DSL+AI E
Sbjct: 261 HVGNRNELE--GERICVQVPMFHAFGVIISIMAALTKGATMVLPAAGFSPKDSLQAIVNE 318
Query: 182 KC 183
KC
Sbjct: 319 KC 320
|
|
| UNIPROTKB|F1RT96 ACSF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 269 (99.8 bits), Expect = 1.7e-22, P = 1.7e-22
Identities = 58/149 (38%), Positives = 87/149 (58%)
Query: 41 RPSAYKADALPTKLTRLALRM---GTFRLSDIMQGAGPEYHRRR-EQISKSLNCRDGINI 96
+P A K+ LP +++ GT L D++ E H + K L+C D INI
Sbjct: 195 KPGALKSQRLPDLTIVISVDTPLPGTLLLDDVVAAGNQEQHLAQLRHTQKFLSCHDPINI 254
Query: 97 QFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFD-KTDHK--ILLQVPMFHTFGTAMGIL 153
QFTSGTTG PK A L+HYN++NNSN IG+RL+ KT K ++L P++H G+ G +
Sbjct: 255 QFTSGTTGSPKGATLSHYNIVNNSNMIGERLQLSQKTAEKSRMVLPTPLYHCLGSVGGTM 314
Query: 154 NAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
++ HG T ++ +P F +L AI++E+
Sbjct: 315 VSLMHGVTLILSSPVFDGKKALEAISRER 343
|
|
| UNIPROTKB|B4DUF5 ACSF2 "Acyl-CoA synthetase family member 2, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 265 (98.3 bits), Expect = 1.7e-22, P = 1.7e-22
Identities = 55/151 (36%), Positives = 91/151 (60%)
Query: 39 NPRPSAYKADALPTKLTRLALRM---GTFRLSDIMQGAGPEYHRRREQISKS-LNCRDGI 94
N +P A K+ LP T +++ GT L +++ H + Q ++ L+C D I
Sbjct: 39 NAQPGALKSQRLPDLTTVISVDAPLPGTLLLDEVVAAGSTRQHLDQLQYNQQFLSCHDPI 98
Query: 95 NIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEF-DKTDHKI--LLQVPMFHTFGTAMG 151
NIQFTSGTTG PK A L+HYN++NNSN +G+RL+ +KT ++ +L P++H G+ G
Sbjct: 99 NIQFTSGTTGSPKGATLSHYNIVNNSNILGERLKLHEKTPEQLRMILPNPLYHCLGSVAG 158
Query: 152 ILNAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
+ + +G+T ++ +P F +L AI++E+
Sbjct: 159 TMMCLMYGATLILASPIFNGKKALEAISRER 189
|
|
| MGI|MGI:2388287 Acsf2 "acyl-CoA synthetase family member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 268 (99.4 bits), Expect = 2.2e-22, P = 2.2e-22
Identities = 59/149 (39%), Positives = 95/149 (63%)
Query: 41 RPSAYKADALPTKLTRLALRM---GTFRLSDIMQGAGPEYHRRREQISKS-LNCRDGINI 96
+P A K++ LP T +++ GT L DI+ G E + + + ++ L+C D INI
Sbjct: 201 QPGALKSERLPDLTTVISVDAPLPGTLLLDDIVAAGGKEQNLAQLRYNQRFLSCYDPINI 260
Query: 97 QFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFD-KT--DHKILLQVPMFHTFGTAMGIL 153
QFTSGTTG+PK A L+H+N++NNS IG+RL+ KT + +++L P++H G+ G +
Sbjct: 261 QFTSGTTGNPKGATLSHHNIVNNSMLIGQRLKMPTKTAEELRLVLPSPLYHCLGSVGGTM 320
Query: 154 NAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
+M HG+T ++ +PSF +L AI++EK
Sbjct: 321 VSMMHGATLLLSSPSFNGKKALEAISREK 349
|
|
| UNIPROTKB|Q5LQG2 SPO2528 "AMP-binding enzyme" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 267 (99.0 bits), Expect = 2.4e-22, P = 2.4e-22
Identities = 50/122 (40%), Positives = 74/122 (60%)
Query: 62 GTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSN 121
G + +I + G E+ R I K+LN D INIQFTSGTTG PK A LTH N++NN+
Sbjct: 183 GEWAFGEIARMGGAEHRARLPDIDKTLNPDDPINIQFTSGTTGQPKGATLTHRNIVNNAR 242
Query: 122 FIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKE 181
F+ R+ + D ++ + VP++H FG MG+L A++ G+ V P +F P +L + E
Sbjct: 243 FVTDRINLSERD-RLAIPVPLYHCFGMVMGVLGAVSKGAAMVFPGEAFDPAQTLDTVEAE 301
Query: 182 KC 183
+C
Sbjct: 302 RC 303
|
|
| TIGR_CMR|SPO_2528 SPO_2528 "AMP-binding enzyme" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 267 (99.0 bits), Expect = 2.4e-22, P = 2.4e-22
Identities = 50/122 (40%), Positives = 74/122 (60%)
Query: 62 GTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSN 121
G + +I + G E+ R I K+LN D INIQFTSGTTG PK A LTH N++NN+
Sbjct: 183 GEWAFGEIARMGGAEHRARLPDIDKTLNPDDPINIQFTSGTTGQPKGATLTHRNIVNNAR 242
Query: 122 FIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKE 181
F+ R+ + D ++ + VP++H FG MG+L A++ G+ V P +F P +L + E
Sbjct: 243 FVTDRINLSERD-RLAIPVPLYHCFGMVMGVLGAVSKGAAMVFPGEAFDPAQTLDTVEAE 301
Query: 182 KC 183
+C
Sbjct: 302 RC 303
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 190 | |||
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 3e-40 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 3e-33 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 2e-31 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 4e-19 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 3e-18 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 4e-18 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 5e-18 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 4e-15 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 7e-15 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 2e-14 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 2e-14 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 1e-12 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 2e-12 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 4e-12 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 1e-11 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 5e-11 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 1e-10 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 2e-10 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 3e-10 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 3e-10 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 1e-09 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 4e-09 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 6e-09 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 8e-09 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 4e-08 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 4e-08 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 4e-08 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 5e-08 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 6e-08 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 9e-08 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 1e-07 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 1e-07 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 2e-07 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 2e-07 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 3e-07 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 5e-07 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 5e-07 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 5e-07 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 5e-07 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 6e-07 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 1e-06 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 3e-06 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 5e-06 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 8e-06 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 8e-06 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 9e-06 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 9e-06 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 1e-05 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 1e-05 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 2e-05 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 2e-05 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 3e-05 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 3e-05 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 5e-05 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 5e-05 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 5e-05 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 5e-05 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 5e-05 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 7e-05 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 8e-05 | |
| cd05924 | 365 | cd05924, FACL_like_5, Uncharacterized subfamily of | 8e-05 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 9e-05 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 1e-04 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 1e-04 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 1e-04 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 1e-04 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 2e-04 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 2e-04 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 2e-04 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 3e-04 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 4e-04 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 4e-04 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 5e-04 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 7e-04 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 7e-04 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 7e-04 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 8e-04 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 0.001 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 0.001 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 0.001 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 0.001 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 0.001 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 0.002 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 0.002 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 0.003 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 0.003 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 0.004 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 3e-40
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Query: 62 GTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSN 121
G +++ +L+ D INIQ+TSGTTG PK A LTH N++NN
Sbjct: 170 GMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGY 229
Query: 122 FIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKE 181
FIG+ ++ + D ++ + VP++H FG +G L + HG+T V P F P+ +L A+ +E
Sbjct: 230 FIGEAMKLTEED-RLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEE 288
Query: 182 KC 183
+C
Sbjct: 289 RC 290
|
Length = 559 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 3e-33
Identities = 40/94 (42%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Query: 90 CRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTA 149
D IQ+TSGTTG PK A LTH N++NN I +RL + D + L+ VP+FH FG
Sbjct: 1 PDDPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGD-RTLVPVPLFHVFGLV 59
Query: 150 MGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
+G+L ++ G+ T+V F P +LR I +E+
Sbjct: 60 LGVLASLTAGA-TLVLMEKFDPGAALRLIERERI 92
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 2e-31
Identities = 43/115 (37%), Positives = 68/115 (59%), Gaps = 2/115 (1%)
Query: 70 MQGAGPEYHRRR-EQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLE 128
+Q G R + SL+ D INIQ+TSGTTG PK A L+H+N++NN F+ + L
Sbjct: 179 LQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLG 238
Query: 129 FDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
+ D ++ + VP++H FG + L M G+ V P +F P+ +L+A+ +E+C
Sbjct: 239 LTEHD-RLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERC 292
|
Length = 558 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 4e-19
Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 91 RDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDH-KILLQVPMFHTFGTA 149
D + +TSGTTG PK LTH NL+ N+ I L T +L +P+FH FG
Sbjct: 171 DDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLI 230
Query: 150 MGILNAMNHGSTTVVPAP-SFKPMDSLRAIAKEKC 183
+G+L + G T V+ +P F P + L I K K
Sbjct: 231 VGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKV 265
|
Length = 534 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 3e-18
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
I FTSGTTG PK A LTH L++N+ + L + D + L P FH FG G+
Sbjct: 171 ILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGD-RYLAANPFFHVFGYKAGVNAP 229
Query: 156 MNHGSTTVVPAPSFKPMDSLRAIAKEK 182
+ G+ T++P P F P + R I E+
Sbjct: 230 LMRGA-TILPLPVFDPDEVFRLIETER 255
|
Length = 513 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 4e-18
Identities = 31/139 (22%), Positives = 48/139 (34%), Gaps = 3/139 (2%)
Query: 46 KADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGH 105
L + + +G + E + ++ D I +TSGTTG
Sbjct: 86 LEVLLKLLVLLALIIVGDDGEGLDLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGK 145
Query: 106 PKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVP 165
PK LTH NL+ + + +R D +L + H G+ I + G T V+
Sbjct: 146 PKGVMLTHRNLLALAAGLAERFGLTPGD--RVLLLLPLHFDGSVWEIFGPLLAGGTLVLV 203
Query: 166 APSFKPMDSL-RAIAKEKC 183
L I K K
Sbjct: 204 PKFTLDPARLLDLIEKYKV 222
|
Length = 412 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 5e-18
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQV-PMFHTFGTAMGILN 154
+Q+T GTTG PK A LTH NL+ N I ++ + L P+FH FG + +L
Sbjct: 130 LQYTGGTTGVPKGAMLTHRNLVANVQQIAAWVKDLREGEDRFLTALPLFHIFGLTVNMLL 189
Query: 155 AMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
+ G+ T V P+F+P++ L+ I + +
Sbjct: 190 GLRLGA-TNVLVPNFRPINVLKEIKRYRF 217
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 4e-15
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMN 157
+TSGTTGHPK L+H NL +S + L+ + D L+ VPMFH + L A+
Sbjct: 174 YTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDD-VYLVIVPMFHVHAWGLPYL-ALM 231
Query: 158 HGSTTVVPAPSFKPMDSLRAIAKEK 182
G+ V+P F P + L I E+
Sbjct: 232 AGAKQVIPR-RFDPENLLDLIETER 255
|
Length = 521 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 7e-15
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 91 RDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQV-PMFHTFGTA 149
D I +TSGTTG PK LTH NL +N + D + + L P++H
Sbjct: 1 DDPALILYTSGTTGRPKGVMLTHRNL--LANAVNALAGVDLSPGDVYLLAAPLYHA-AGG 57
Query: 150 MGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
+ +L A+ G T V+ P F P L I + +
Sbjct: 58 LFLLPALAAGGTVVLM-PKFDPEAVLDLIERHR 89
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 2e-14
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 92 DGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMG 151
D I +TSGTTG PK L+H NL+ N+ + + + + D +L +P+FH G G
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGD-VLLSVLPLFHVVGGGSG 59
Query: 152 ILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
+L A+ G T V+ P+ L I + +
Sbjct: 60 LLGALLAGGTVVLYEGFPFPLSFLELIEQYRV 91
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 2e-14
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
+Q+TSG+TG PK +TH NL+ N I + D D + +P++H G G+L
Sbjct: 153 LQYTSGSTGAPKGVMVTHGNLLANLRAIARAFGLDPDDV-GVSWLPLYHDMGLIGGLLQP 211
Query: 156 MNHGSTTVVPAP-SF--KPMDSLRAIAKEKC 183
+ G V+ +P +F +P+ L AI++ +
Sbjct: 212 LYAGFPVVLMSPLAFLRRPLRWLEAISRYRA 242
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 1e-12
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
I FTSG+ G PK L+H NL+ N + I ++ T+ +L +P+FH FG + +L
Sbjct: 150 ILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDL-NTEDVLLGALPLFHAFGLTVTLLLP 208
Query: 156 MNHGSTTVVPAPSFKPMDSLRAIAK 180
+ G VV P+ P+D+ + IA+
Sbjct: 209 LLTG-LRVVYYPN--PLDA-KKIAE 229
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 2e-12
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
I +TSG+TG PK L+H NL + I + LE + D +IL +P +G + +L A
Sbjct: 7 IIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDD-RILAVLPFSFDYGLSQ-LLTA 64
Query: 156 MNHGSTTVVPAPSFK-PMDSLRAIAKEKC 183
G T+V F P D L+ +AKE+
Sbjct: 65 FRVGG-TLVLESRFAFPRDVLKHLAKERI 92
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 4e-12
Identities = 45/159 (28%), Positives = 63/159 (39%), Gaps = 34/159 (21%)
Query: 48 DALPTKLTRLALRM-----------------GTFRLSDIMQGAGP-----EYHRRREQIS 85
A+P L RLALR+ GT ++ A H R
Sbjct: 162 AAMPL-LQRLALRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDD 220
Query: 86 KSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRL--EFDKTDHKILLQVPMF 143
+L I +TSGTTG PK A LTH NL N+ GK ++L +PMF
Sbjct: 221 VAL-------ILYTSGTTGKPKGAQLTHRNLFANA-AQGKAWVPGLGDGPERVLAALPMF 272
Query: 144 HTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
H +G + + A++ G V+ P+ L A+ K
Sbjct: 273 HAYGLTLCLTLAVSIGGELVL-LPAPDIDLILDAMKKHP 310
|
Length = 573 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-11
Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQV-PMFHTFGTAMGILN 154
+ ++SGTTG K LTH NLI N + + + L V PMFH +G + +L
Sbjct: 163 LPYSSGTTGRSKGVMLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLA 222
Query: 155 AMNHGSTTVVPAPSFKPMDSLRAIAKEKCM 184
+ G+T VV P F L AI K K
Sbjct: 223 LLRLGATVVV-MPRFDLEKFLAAIEKYKVT 251
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 5e-11
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMN 157
+TSGTTG+PK LTH NL+ + + + + D +L +P+ H F +G ++
Sbjct: 95 YTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLSPGDR-VLSFLPLAHVFEQRLGEYLPLS 153
Query: 158 HGSTTVVPAPSFKPMDSLRAIA 179
G+ ++ LR +
Sbjct: 154 SGARVNFAESPETLLEDLREVR 175
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 1e-10
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
I +TSGTTG PK LTH L+ + + L D +L +P+FH A + A
Sbjct: 86 ILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDD-VLLTPLPLFHINAQAYSVYAA 144
Query: 156 MNHGSTTVVPAPSFKP 171
+ G T+V P F
Sbjct: 145 LLVG-ATLVLLPRFSA 159
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-10
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINN---SNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGI 152
+ ++SGTTG PK L+H N+I N K D +L +P +H +G
Sbjct: 151 LLYSSGTTGLPKGVMLSHKNIIANLSQVQDTLKGNPDSSND-VVLTFLPFYHAYG-LTTT 208
Query: 153 LNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCM 184
L ++ G+T ++ P F L+ I K K
Sbjct: 209 LASLLCGATVII-MPKFDSETFLKLIEKYKVT 239
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 3e-10
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
+ FTSGT G PK LTH N++ + RL D ++ P+ H G G+
Sbjct: 192 VLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQD-VFMMPAPLGHATGFLHGVTAP 250
Query: 156 MNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
G+ +V+ F P L + +++C
Sbjct: 251 FLIGARSVL-LDIFTPDACLALLEQQRC 277
|
Length = 547 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 3e-10
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
I +TSGTTG PK LTH NL N+ + + + +D +L +P+ H G +
Sbjct: 93 IIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTASDV-LLHALPLHHVHGLFNALHCP 151
Query: 156 MNHGSTTVVPAPSFKP 171
+ G+ +V P F P
Sbjct: 152 LWAGA-SVEFLPRFDP 166
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 1e-09
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 82 EQISKSLNCRDGINIQ------FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHK 135
Q S +D +N + +TSGTTG PKAA + H + D
Sbjct: 89 TQSSTEPPSQDDVNFRDKLFYIYTSGTTGLPKAAVIVHSRYYRIAAGAYYAFGMRPED-V 147
Query: 136 ILLQVPMFHTFGTAMGILNAMNHGSTTVV 164
+ +P++H+ G MG+ A+ HGST V+
Sbjct: 148 VYDCLPLYHSAGGIMGVGQALLHGSTVVI 176
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 4e-09
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQV-PMFHTFGTAMGILN 154
I TSGTTG PK LTH NL+ ++ I K + T L V P+FH G + +L
Sbjct: 7 ILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKL--TPSDRCLNVMPLFHIHGLIVSLLA 64
Query: 155 AMNHGSTTVVPA 166
+ G + V P
Sbjct: 65 TLLAGGSVVCPP 76
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 6e-09
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
I FTSG+ G PK L+H NL+ N + R++F D K+ +P+FH+FG G++
Sbjct: 798 ILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPED-KVFNALPVFHSFGLTGGLVLP 856
Query: 156 MNHGSTTVV-PAP 167
+ G + P+P
Sbjct: 857 LLSGVKVFLYPSP 869
|
Length = 1140 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 8e-09
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
I +TSGTTG PK A LTH NL + + D + VP+FH G +L
Sbjct: 179 IMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIG-SMLPG 237
Query: 156 MNHGSTTVV-PAPSFKPMDSLRAIAKEK 182
+ G+ TV+ P +F P L + EK
Sbjct: 238 LLLGAPTVIYPLGAFDPGQLLDVLEAEK 265
|
Length = 542 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 4e-08
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFG 147
IQF+SG+TG PK LTH NL+ N I + E D L +P+ H G
Sbjct: 111 IQFSSGSTGEPKGVILTHKNLLTNIEAIIEAAEITSED-VFLSWMPLTHDMG 161
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 4e-08
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 13/120 (10%)
Query: 75 PEYHRRREQISKSLNC--------RDGINIQFTSGTTGHPKAAFLTHYNLINNSN----F 122
E+ + E I + + D I ++SGTTG K LTH NLI F
Sbjct: 174 IEFPKFYELIKEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRF 233
Query: 123 IGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
+ E+ +D+ L +PMFH +G ++ ++ ++ GST VV F D ++ I + K
Sbjct: 234 EASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVV-MRRFDASDMVKVIDRFK 292
|
Length = 560 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 4e-08
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 97 QFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAM 156
Q TSG+TG PKA +TH NL N+ + EFD ++ +P+FH G + M
Sbjct: 158 QLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLTVPM 217
Query: 157 NHGSTTVVPAPSFKPMDSLR 176
G+ V PMD LR
Sbjct: 218 YFGAELV----KVTPMDFLR 233
|
Length = 545 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 5e-08
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAM-GILN 154
Q + GTTG PK TH + + ++ + D L +P H F + G+L
Sbjct: 144 FQLSGGTTGLPKLIPRTHNDYLYSARASAEACGLDPGT-VYLAVLPAAHNFTLSSPGLLG 202
Query: 155 AMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
A+ G TVV P + I +EK
Sbjct: 203 ALLAGG-TVVLHHPPSPDVAFPLIEREK 229
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 6e-08
Identities = 36/93 (38%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 91 RDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAM 150
GI I TSGTTG PK A + + + R+ F + LL PMFH G A
Sbjct: 208 PGGIVIL-TSGTTGTPKGAPRPEPSPLAPLAGLLSRVPF-RAGETTLLPAPMFHATGWAH 265
Query: 151 GILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
L AM GST V+ F P +L IAK K
Sbjct: 266 LTL-AMALGSTVVLRR-RFDPEATLEDIAKHKA 296
|
Length = 549 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 9e-08
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQV-PMFHTFGTAMGILN 154
I +TSGTTG PK TH ++ + T +LL P+FH G +
Sbjct: 89 IPYTSGTTGLPKGCMHTHRTVLATA--AASAAWSGLTPDSVLLAFLPLFHVAGMQGSMNA 146
Query: 155 AMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
+ G+T V+ + + RAI + +
Sbjct: 147 PIYTGATLVLLT-RWDREAAARAIERYRV 174
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-07
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMN 157
+TSGTTG PK TH L+ +RL D +L+ P+ H G G+ +
Sbjct: 100 YTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTP-DDVVLMPSPLAHITGFLYGLELPLL 158
Query: 158 HGSTTVVPAPSFKPMDSLRAIAKEKC 183
G+T V+ + P +L I +
Sbjct: 159 LGATVVL-QDRWDPARALELIREHGV 183
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-07
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKI-LLQVPMFHTFGTAMGILN 154
I +TSGTTG PK A LT N+ N+ + D T H ++ +P+FH G +
Sbjct: 154 ICYTSGTTGKPKGAVLTQENMFWNA--LNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFP 211
Query: 155 AMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
+ G +VP F+P +L I K K
Sbjct: 212 TLFAGGVIIVPR-KFEPTKALSMIEKHK 238
|
Length = 496 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-07
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMN 157
+TSGTTG PKAA ++H ++ S + L D + +P++H+ G +GI+ +
Sbjct: 149 YTSGTTGLPKAARISHLRVLQCSGMLS--LCGVTADDVVYTTLPLYHSSGALLGIVGCIG 206
Query: 158 HGSTTVVPAPSF 169
G+T V+ P F
Sbjct: 207 LGATLVL-KPKF 217
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-07
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMN 157
+TSGTTG PKAA ++H + G D + L +P++H+ +G +A+
Sbjct: 88 YTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKPDD-VLYLCLPLYHSNALTVGWSSALA 146
Query: 158 HGSTTVV 164
G++ +
Sbjct: 147 AGASLAL 153
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 3e-07
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 77 YHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKI 136
R +S S N + FTSGTTG PKA T N ++ + L F + D
Sbjct: 97 AGRYETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTEDD-NW 155
Query: 137 LLQVPMFHTFGTAMGILNAMNHGSTTVVPAP 167
LL +P++H G ++ + + G+T +
Sbjct: 156 LLSLPLYHISGLSI-LFRWLIEGATLRIVDK 185
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 5e-07
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 91 RDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQ-VPMFHTFGTA 149
+ +TSGTTG+PK +H +L+ ++ ++ +L VPMFH
Sbjct: 162 NTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASALPDSLGLSESDTVLPVVPMFHVNAWG 221
Query: 150 MGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
+ M G+ V+P P L I +EK
Sbjct: 222 LPYAATMV-GAKLVLPGRYLDPASLLDLIEEEK 253
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 5e-07
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHK--ILLQVPMFHTFGTAMGIL 153
I FTSGT+G PK L+ NL ++ G + D L PMFH G +
Sbjct: 140 ILFTSGTSGQPKGVMLSERNLQQTAHNFGV---LGRVDAHSSFLCDAPMFHIIGLITSVR 196
Query: 154 NAMNHGSTTVVPAPSFKPMDSLRAIA 179
+ G + +V + F+P +L +
Sbjct: 197 PVLAVGGSILV-SNGFEPKRTLGRLG 221
|
Length = 488 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 5e-07
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFG---TAMGILN 154
+TSG+TG PK +TH +L+N ++ +R D D +V F + + I
Sbjct: 127 YTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDD-----RVLQFASLSFDASVEEIFG 181
Query: 155 AMNHGSTTVVPAPS 168
A+ G+T VVP
Sbjct: 182 ALLAGATLVVPPED 195
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 5e-07
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFG 147
I F+SG+ G PK L+H+N+++N I D IL +P FH+FG
Sbjct: 787 IIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDD-VILSSLPFFHSFG 837
|
Length = 1146 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 6e-07
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 99 TSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNH 158
T GTTG PK A TH N + N+ ++G L + +P+FH + L +
Sbjct: 221 TGGTTGMPKLAQHTHGNEVANA-WLGALLLGLGPGDTVFCGLPLFHVNALLVTGLAPLAR 279
Query: 159 GSTTVVPAPS 168
G+ V+ P
Sbjct: 280 GAHVVLATPQ 289
|
Length = 632 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-06
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQV-PMFHTFGTAMGILN 154
+ +TSGTTG PK TH + +N +G L + T ++L V P+FH G +
Sbjct: 195 LPYTSGTTGVPKGCMHTHRTV--MANAVGSVLWSNSTPESVVLAVLPLFHVTGMVHSMNA 252
Query: 155 AMNHGSTTVV 164
+ G+T V+
Sbjct: 253 PIYAGATVVL 262
|
Length = 546 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-06
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
I +TSGTTG PK LTH NL+ I + L ++L +P+ H F A
Sbjct: 196 IIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAF-EGGL 254
Query: 156 MNHGSTTVVPAPSFK 170
+G TV+ +
Sbjct: 255 ALYGGVTVLFKEDPR 269
|
Length = 613 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 5e-06
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFD-KTDHKILLQV-PMFHTFG-TAMGI 152
+Q+T GTTG PK LTH NL++N+ +G + ++ K +++L V P FH +G TA+
Sbjct: 211 LQYTGGTTGFPKGVMLTHKNLVSNT-LMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMN 269
Query: 153 LNAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
L+ M ++P K + AI K K
Sbjct: 270 LSIMQGYKMVLIPKFDMKMV--FEAIKKHK 297
|
Length = 563 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 8e-06
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMN 157
+TSGTTG PK ++ + SN + L D + +P++H +G+ +
Sbjct: 94 YTSGTTGLPKGCAISWRRTLVTSNPLSHDLNLQFPD-RTYTCMPLYHGTAAFLGLCYCLG 152
Query: 158 HGSTTVV 164
G T +
Sbjct: 153 SGGTLCL 159
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 8e-06
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 96 IQFTSGTTGHPKAAFLTHYNL---INNSNFIGKRLEFDKTD-HKILLQVPMFHTFGTAMG 151
+Q+T GTTG PK A LTH NL ++ + GK + D +++ +P+FH + +
Sbjct: 197 LQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYALTVI 256
Query: 152 ILNAMNHG 159
+L ++ G
Sbjct: 257 LLRSLRRG 264
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 9e-06
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLE--FDKTD 133
I +TSGTTG+PK LTH N++ I K + TD
Sbjct: 116 IMYTSGTTGNPKGVMLTHGNIVAGVAGINKIVPEFIGPTD 155
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 9e-06
Identities = 36/159 (22%), Positives = 53/159 (33%), Gaps = 29/159 (18%)
Query: 24 RTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQ 83
RTL E +P L H
Sbjct: 122 RTLIIVGDPAHASEGHPGEEPASWPKLLALGDADPP------------------HPV--- 160
Query: 84 ISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMF 143
I + I +TSG+TG PK L+H NL+ + + LE D ++L +P+
Sbjct: 161 IDSDMAA-----ILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDD-RLLAVLPLS 214
Query: 144 HTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
+G + A G+ TVV P D L+A+ K
Sbjct: 215 FDYGFNQ-LTTAFYVGA-TVVLHDYLLPRDVLKALEKHG 251
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-05
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQ-VPMFHTFG 147
I +TSGTTG K A L+H NL++N+ + F D +L+ +P+FHT G
Sbjct: 161 ILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDD--VLIHALPIFHTHG 211
|
Length = 504 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 34/183 (18%), Positives = 59/183 (32%), Gaps = 35/183 (19%)
Query: 12 EDRIGESQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALRMGTFRLSDIMQ 71
DRI + P + L D N + A DA + + + + ++
Sbjct: 105 ADRIADLGP---KVLIADDGTFR----NGKEIALLEDADAVLSSVVVVPRLGLWYDEAVE 157
Query: 72 GAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDK 131
A ++ E + D + + +TSGTTG PK +H L +
Sbjct: 158 KASEKFEF--EPLPAD----DPLFLLYTSGTTGKPKGIVHSHGGY----------LVEHR 201
Query: 132 TDHKILLQ----------VPMFHTFGTAMGILNAMNHGSTTVV--PAPSFKPMDSLRAIA 179
K +G + + + G+TTV+ P + P A+
Sbjct: 202 LTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALE 261
Query: 180 KEK 182
K K
Sbjct: 262 KYK 264
|
Length = 528 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMN 157
+TSGTTG PK T L+ N +RL D IL+ PM H G G++ +
Sbjct: 204 YTSGTTGEPKGVMHTANTLMANIVPYAERLGL-GADDVILMASPMAHQTGFMYGLMMPVM 262
Query: 158 HGSTTV 163
G+T V
Sbjct: 263 LGATAV 268
|
Length = 547 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 16/24 (66%), Positives = 17/24 (70%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINN 119
I +TSGTTG PK LTH NLI N
Sbjct: 226 ICYTSGTTGTPKGVVLTHGNLIAN 249
|
Length = 651 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-05
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINN----SNFIGKRLEFDKTDHKILLQVPMFHTFG-TAM 150
+Q+T GTTG K A LTH NL+ N ++ + ++ ++ +P++H F TA
Sbjct: 213 LQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTAN 272
Query: 151 GIL 153
G++
Sbjct: 273 GLV 275
|
Length = 560 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-05
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQ-VPMFHTFGTAMGILNAM 156
FTSG+TG PKA TH L N I + F + +L+ +P HTFG +
Sbjct: 171 FTSGSTGLPKAVINTHRMLCANQAMIAQCWPFLTEEPPVLVDWLPWNHTFGGNHNFNMVL 230
Query: 157 NHGST 161
+G T
Sbjct: 231 YNGGT 235
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 5e-05
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQ-VPMFHTFGTAMGILNAM 156
FTSG+TG PKA TH L N + + F + +L+ +P HTFG + +
Sbjct: 216 FTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNLGIVL 275
Query: 157 NHGST 161
+G T
Sbjct: 276 YNGGT 280
|
Length = 614 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 5e-05
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 98 FTSGTTGHPKAAFLTHYNL---INNSNFIGKRLEFDKTDHKILLQV-PMFHTFGTAMGIL 153
FTSGTTG PKAA LTH + I N L T+ L V P+ H G + L
Sbjct: 170 FTSGTTGRPKAAVLTHGQMAFVITNHL---ADLMPGTTEQDASLVVAPLSH--GAGIHQL 224
Query: 154 NAMNHGSTTVV-PAPSFKPMDSLRAIAKEK 182
+ G+ TV+ P+ F P + + + +
Sbjct: 225 CQVARGAATVLLPSERFDPAEVWALVERHR 254
|
Length = 528 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 5e-05
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 99 TSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNH 158
T GTTG PK A +H N + N+ +L +P+FH G + L +
Sbjct: 10 TGGTTGAPKLARHSHRNEVANAWMAALLSGL-GPGDVLLNGLPLFHVGGAIVTGLAPLAR 68
Query: 159 GSTTVVPAPS 168
G+T V+P PS
Sbjct: 69 GATVVLPTPS 78
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-05
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTF---GTAMGILN 154
+TSG+TG PK A H L+N + + D V F +F + +
Sbjct: 1725 YTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAAD-----VVLQFTSFAFDVSVWELFW 1779
Query: 155 AMNHGSTTVVPAP--SFKPMDSLRAIAKEK 182
+ +G+ V+ P P ++ I +++
Sbjct: 1780 PLINGARLVIAPPGAHRDPEQLIQLIERQQ 1809
|
Length = 3956 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-05
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKT-DHKILLQVPMFHTFGTAMGILN 154
+Q+TSG+T PK ++H NL+ N I D D I+ +P++H G G+L
Sbjct: 171 LQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDLNPDDVIVSWLPLYHDMGLIGGLLQ 230
Query: 155 AMNHGSTTVVPAPSF---KPMDSLRAIAK 180
+ G V+ +P++ +P+ L AI++
Sbjct: 231 PIFSGVPCVLMSPAYFLERPLRWLEAISE 259
|
Length = 4334 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 7e-05
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
I FTSGTTG PK H +++ + + + D + P+ TFG +L
Sbjct: 152 IGFTSGTTGLPKGTMHFHRDILAICDAFPRHVLQPTPDDVFIGSPPLAFTFGLGGLVLFP 211
Query: 156 MNHGSTTV-VPAPSFKPMDSLRAIAKEK 182
+ G++ V + + P L+AI + +
Sbjct: 212 LRFGASAVLLEQAT--PPLLLKAIQEHR 237
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 8e-05
Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 15/95 (15%)
Query: 95 NIQFTSGTTGHPKAAFLTHYNLINN---SNFIGKRLEFDKTDHKILLQVPMFHTFGTAM- 150
I FTSG+TG PKA T N + + S L D+ LL +P+FH G A+
Sbjct: 81 TIIFTSGSTGKPKAVVHTWGNHLASARGSAE---NLGLTPDDNW-LLSLPLFHVSGLAIV 136
Query: 151 --GILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
+L +V F A+
Sbjct: 137 MRSLLAGG-----ALVLPDKFDAEAIAEALENHGV 166
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 8e-05
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 17/108 (15%)
Query: 90 CRDGINIQFTSGTTGHPKAAFLTHYNLINNSN-------------FIGKRLEFDKTDHKI 136
D + + +T GTTG PK ++ + K++ +
Sbjct: 2 SADDLYMLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAAGGAGTRF 61
Query: 137 LLQVPMFHTFGTAM-GILNAMNHGSTTVV-PAPSFKPMDSLRAIAKEK 182
L P+ H G L+A+ G T V+ P F P R + K +
Sbjct: 62 LPACPLMH--GAGQWLALSALFAGGTVVLLPDDKFDPDRVWRTVEKHR 107
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 9e-05
Identities = 16/69 (23%), Positives = 30/69 (43%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
+TSGTTG PK H + + + + L + +I +F +G +L
Sbjct: 96 WLYTSGTTGKPKGVMHRHRDPLTFAEAFARELLGLQPGDRIFSSSKLFFAYGLGNSLLFP 155
Query: 156 MNHGSTTVV 164
+ G++ V+
Sbjct: 156 LFSGASAVL 164
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 97 QFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVP-MFHTFGTAMGILNA 155
++SG+TG PK H++++ + K + T+ ++ +F +G G+
Sbjct: 167 LYSSGSTGRPKGVVHLHHDMLVTAEAYAKNV-LGITEDDVVFSAAKLFFAYGLGNGLYFP 225
Query: 156 MNHGSTTVVPAPSFKPMDSLRAIAKEK 182
++ G+TTV+ P I + K
Sbjct: 226 LSVGATTVLMPERPTPDAVFATIERYK 252
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
I FTSG+ GHPK +H +L+ N I +F D + + +P+FH+FG +G+
Sbjct: 370 ILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPND-RFMSALPLFHSFGLTVGLFTP 428
Query: 156 MNHGS 160
+ G+
Sbjct: 429 LLTGA 433
|
Length = 718 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 1e-04
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 15/76 (19%)
Query: 98 FTSGTTGHPKAAFLTHYNLI---------NNSNFIGKRLEFDKTDHKILLQVPMFHTFGT 148
++SGTTG PK LTH L+ N N + +D IL +PMFH +
Sbjct: 186 YSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNL------YFHSDDVILCVLPMFHIYSL 239
Query: 149 AMGILNAMNHGSTTVV 164
+L + G+ ++
Sbjct: 240 NSVLLCGLRVGAAILI 255
|
Length = 537 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 1e-04
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 14/93 (15%)
Query: 79 RRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINN--------SNFIGKRLEFD 130
RR + + L D +Q+T GTTG K A LTH N++ N + E
Sbjct: 194 RRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKEL- 252
Query: 131 KTDHKILLQVPMFHTFGTAMGILNAMNHGSTTV 163
++ +P++H F + L + G +
Sbjct: 253 -----VVTALPLYHIFALTVNCLLFIELGGQNL 280
|
Length = 560 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQ-VPMFHTFGTAMGILNAM 156
+TSGTTG PK L+H N+ + K ++ + ++ +P+ H + I +
Sbjct: 157 YTSGTTGMPKGVMLSHDNITWTAKAAVKHMDLRTVGQESVVSYLPLSHIAAQILDIWLPI 216
Query: 157 NHGSTTVVPAP 167
+ G P
Sbjct: 217 SVGGCVYFAQP 227
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 92 DGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILL-QVPMFH 144
D I++ +TSGTTG+PK TH N+ +G +E+ D + L +PMFH
Sbjct: 168 DPISLNYTSGTTGNPKGVVYTHRGAYLNA--LGNVIEWGMPDRPVYLWTLPMFH 219
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 2e-04
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFG---TAMGILN 154
+TSG+TG PK + H L+N ++ +R D +V F +F + I
Sbjct: 100 YTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLTAGD-----RVLQFASFSFDASVWEIFP 154
Query: 155 AMNHGSTTVVPAP 167
+ G+T V+ P
Sbjct: 155 PLLSGATLVLAPP 167
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 3e-04
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMN 157
FTSGT+G PKA TH + + + +R D + +P+FH+ G A+
Sbjct: 159 FTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDD-VCYVSMPLFHSNAVMAGWAVALA 217
Query: 158 HGSTTVVPA 166
G++ +
Sbjct: 218 AGASIALRR 226
|
Length = 529 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 4e-04
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLE-FDKTDHKILLQVPMFHTFGTAMGILN 154
I FTSG+TG PK ++H NL +F+ +E FD T+ + F + +
Sbjct: 102 ILFTSGSTGKPKGVQISHANLA---SFLDWMVEDFDLTEGDVFSNQAPFSFDLSVFDLFP 158
Query: 155 AMNHGSTTVVPAP 167
A+ G+T V
Sbjct: 159 ALASGATLYVIPK 171
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 4e-04
Identities = 31/107 (28%), Positives = 42/107 (39%), Gaps = 15/107 (14%)
Query: 60 RMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINN 119
MG L ++ A P+ I D I FTSG+TG PK TH
Sbjct: 60 GMGRKHLGRCLEEAEPDAF-----IGIPK-ADDPAAILFTSGSTGPPKGVVYTHRTFAAQ 113
Query: 120 SNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPA 166
+ + + D + L P F FG A+G+ TTV+PA
Sbjct: 114 IDALRSLYGIREGD-RDLAAFPPFALFGPALGV--------TTVIPA 151
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 5e-04
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
I +TSG+TG PK + H L N N G R D D +L + + I A
Sbjct: 371 IIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADD--RVLALASLSFDASVFEIFGA 428
Query: 156 MNHGSTTVVPAP 167
+ G+ V+
Sbjct: 429 LLEGARLVLAPA 440
|
Length = 642 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 7e-04
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMG---ILN 154
+TSG+TG PK ++H L N I +RL+ D + M TF +G +
Sbjct: 663 YTSGSTGQPKGVAISHGALANYVCVIAERLQLAADD-----SMLMVSTFAFDLGVTELFG 717
Query: 155 AMNHGSTTVVPAP 167
A+ G+T + P
Sbjct: 718 ALASGATLHLLPP 730
|
Length = 3956 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 7e-04
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMN 157
+TSGTTG PK T L +N + +RLE D IL+ PM H G G++ +
Sbjct: 202 YTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGD-VILMASPMAHQTGFMYGLMMPLI 260
Query: 158 HGSTTVV 164
+T V+
Sbjct: 261 LNATAVL 267
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 7e-04
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNL 116
L+ D I FTSGTT PK +THYNL
Sbjct: 170 LSTDDTAEILFTSGTTSRPKGVVITHYNL 198
|
Length = 517 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 8e-04
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQV-PMFHTFGTAMGILNAM 156
+TSGTTG PK A + + F+ + H ++L + P++H G ++ A+
Sbjct: 159 YTSGTTGLPKGAVIPQRAAESRVLFMSTQAGLRHGRHNVVLGLMPLYHVIGFFAVLVAAL 218
Query: 157 NHGSTTVVPAPSFKPMDSLRAIAKEK 182
T V F P D+L+ I +E+
Sbjct: 219 ALDG-TYVVVEEFDPADALKLIEQER 243
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.001
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 98 FTSGTTGHPKAAFLTHY 114
+TSGTTG PKAA ++H
Sbjct: 206 YTSGTTGLPKAAVMSHM 222
|
Length = 600 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.001
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRL--EFDKTDHKI-LLQVPMFHTFGTAMGILN 154
FTSGTTG PKA +H L F G+ L F T + + +P+FH+ G
Sbjct: 157 FTSGTTGAPKAVRCSHGRLA----FAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAP 212
Query: 155 AMNHGSTTVVPA 166
A+ G+ +PA
Sbjct: 213 AVASGAAVALPA 224
|
Length = 540 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.001
Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 20/100 (20%)
Query: 92 DGINIQFTSGTTGHPKAAFLTHYNLINN--SNFIGKRLEFDKTDHKILLQVPMFHT---- 145
D I +TSGT PK A LTH LI S + + D L +P++H
Sbjct: 172 DLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVA--GDMSADD-IPLHALPLYHCAQLD 228
Query: 146 --FGTAMGILNAMNHGSTTV-VPAPSFKPMDSLRAIAKEK 182
G + + G+T V + AP P LR I E+
Sbjct: 229 VFLGPYLYV------GATNVILDAPD--PELILRTIEAER 260
|
Length = 523 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.001
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFI---GKRLEFDKTDHKILLQVPMFHTFGTAMG-IL 153
+TSG+TG PK +TH N+ NF+ G L D +LQ F ++ I
Sbjct: 106 YTSGSTGKPKGVVITHRNI---CNFLRAEGAILGIRPGD--RVLQF-ASIAFDVSILEIF 159
Query: 154 NAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
+ G T V+P + D + + +
Sbjct: 160 TTLLAGGTLVIPPEELRLEDLAEFLNRLR 188
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.001
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINN 119
+Q+T GTTG K A LTH NL+ N
Sbjct: 212 LQYTGGTTGVAKGAMLTHRNLVAN 235
|
Length = 562 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 0.002
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQ-VPMFHTFG 147
I FTSGT PK LTH NL+ N K F + +++ +P FH +G
Sbjct: 188 ILFTSGTEKLPKGVPLTHANLLANQRACLKF--FSPKEDDVMMSFLPPFHAYG 238
|
Length = 539 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.002
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGK 125
+ TSG+TG PK LTH N++ + G
Sbjct: 172 LLLTSGSTGVPKCVVLTHRNIL--ARSAGT 199
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 37.6 bits (87), Expect = 0.003
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMN 157
+TSG+TG PK ++H +L+N+ + G+R E D +LQ F G+ G+ + +
Sbjct: 4701 YTSGSTGRPKGVAVSHGSLVNHLHATGERYELTPDDR--VLQFMSFSFDGSHEGLYHPLI 4758
Query: 158 HGSTTVVPAPSFKPMDSLRA 177
+G++ V+ S + L A
Sbjct: 4759 NGASVVIRDDSLWDPERLYA 4778
|
Length = 5163 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.003
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 92 DGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILL-QVPMFH 144
D I + +TSGTTG+PK H N+ + L + H + L +PMFH
Sbjct: 183 DAIALNYTSGTTGNPKGVVYHHRGAYLNA--LSNILAWGMPKHPVYLWTLPMFH 234
|
Length = 545 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 36.8 bits (85), Expect = 0.004
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
I FT GTTG PK TH N+ ++ I D + + +P++H G +L
Sbjct: 181 IMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAV-MPLYHGHGLIAALLAT 239
Query: 156 MNHGSTTVVPA 166
+ G ++PA
Sbjct: 240 LASGGAVLLPA 250
|
Length = 534 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 190 | |||
| KOG1177|consensus | 596 | 99.98 | ||
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 99.95 | |
| KOG1176|consensus | 537 | 99.93 | ||
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 99.92 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 99.91 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 99.91 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 99.91 | |
| KOG1179|consensus | 649 | 99.91 | ||
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 99.91 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 99.91 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 99.9 | |
| PLN02654 | 666 | acetate-CoA ligase | 99.9 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 99.9 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 99.9 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 99.9 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 99.89 | |
| KOG1256|consensus | 691 | 99.89 | ||
| PRK07529 | 632 | AMP-binding domain protein; Validated | 99.89 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 99.89 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 99.88 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 99.88 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 99.88 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 99.88 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 99.88 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 99.88 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 99.88 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 99.88 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 99.87 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 99.87 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 99.87 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 99.87 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 99.87 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 99.87 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 99.87 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 99.87 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 99.87 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 99.87 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 99.86 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 99.86 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 99.86 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 99.86 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 99.86 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 99.86 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 99.86 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 99.86 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 99.86 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.85 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 99.85 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 99.85 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 99.85 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 99.85 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 99.85 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 99.84 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 99.84 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.84 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 99.84 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 99.84 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 99.84 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 99.84 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.84 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 99.84 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 99.84 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 99.84 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 99.84 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 99.84 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 99.83 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 99.83 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 99.83 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 99.83 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 99.83 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 99.83 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 99.83 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 99.83 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 99.82 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 99.82 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 99.82 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 99.82 | |
| PRK05691 | 4334 | peptide synthase; Validated | 99.82 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 99.82 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 99.82 | |
| PRK05691 | 4334 | peptide synthase; Validated | 99.81 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 99.81 | |
| KOG1175|consensus | 626 | 99.81 | ||
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.81 | |
| PRK09274 | 552 | peptide synthase; Provisional | 99.8 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 99.8 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 99.8 | |
| PLN02479 | 567 | acetate-CoA ligase | 99.8 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 99.8 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 99.79 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 99.79 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 99.79 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 99.79 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 99.79 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.79 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 99.79 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 99.78 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 99.78 | |
| KOG1180|consensus | 678 | 99.78 | ||
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 99.78 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 99.78 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 99.78 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 99.77 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 99.77 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 99.77 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 99.77 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 99.76 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 99.76 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 99.76 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 99.76 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 99.75 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 99.74 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 99.74 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 99.74 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 99.74 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 99.73 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 99.73 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.73 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 99.72 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 99.69 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 99.67 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.62 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 99.58 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 99.45 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.32 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 98.31 | |
| KOG1178|consensus | 1032 | 97.94 | ||
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 96.04 | |
| KOG3628|consensus | 1363 | 95.82 | ||
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 93.79 | |
| KOG3628|consensus | 1363 | 93.6 | ||
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 93.23 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 93.23 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 93.05 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 92.7 | |
| PRK09274 | 552 | peptide synthase; Provisional | 92.53 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 92.43 | |
| PLN02654 | 666 | acetate-CoA ligase | 92.39 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 92.02 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 91.46 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 91.43 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 91.05 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 90.64 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 90.6 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 90.59 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 90.52 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 90.18 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 90.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 89.93 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 89.63 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 89.56 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 89.56 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 89.48 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 89.42 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 89.33 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 88.8 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 88.72 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 88.61 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 88.49 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 88.49 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 88.48 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 88.04 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 87.83 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 87.81 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 87.66 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 87.57 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 87.36 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 87.27 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 87.01 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 86.91 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 86.89 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 86.88 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 86.85 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 86.36 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 86.21 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 86.18 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 85.91 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 85.82 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 85.81 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 85.61 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 85.46 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 85.35 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 85.34 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 85.2 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 85.14 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 84.74 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 84.58 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 83.7 | |
| KOG1176|consensus | 537 | 83.46 | ||
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 83.37 | |
| PLN02479 | 567 | acetate-CoA ligase | 83.34 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 83.33 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 83.23 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 82.89 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 82.78 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 82.4 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 82.04 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 81.48 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 81.01 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 80.78 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 80.29 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 80.23 |
| >KOG1177|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.1e-32 Score=213.08 Aligned_cols=184 Identities=36% Similarity=0.599 Sum_probs=164.8
Q ss_pred ccCCCcccccccC-------------------------CCCCCccchhhhhhccCCCCCCCCCC----------------
Q psy13808 5 SRNRGEKEDRIGE-------------------------SQPFRERTLSHQDKIRPGRESNPRPS---------------- 43 (190)
Q Consensus 5 ~~~~~~~~~~v~i-------------------------~p~~~~~~l~~~l~~~~~~~i~~~~~---------------- 43 (190)
.+-|.++|||||+ ||.+..+|+++.|+..+.+++|..+.
T Consensus 95 l~lGL~kGDrVgvwgpN~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPE 174 (596)
T KOG1177|consen 95 LSLGLKKGDRVGVWGPNSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPE 174 (596)
T ss_pred HhhcCCCCCEEEEecCChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHH
Confidence 4568899999987 99999999999999999999998886
Q ss_pred -------CCCCCCCCCCcEEEEee-----cCcccHHHHHhcCCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEe
Q psy13808 44 -------AYKADALPTKLTRLALR-----MGTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFL 111 (190)
Q Consensus 44 -------~~~~~~~~~~~~~i~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~ 111 (190)
.++...+|++.+++..+ .+..-+++++.....+.....+.......|+|++.|.|||||||.|||+-+
T Consensus 175 v~~~~~G~lkS~~lp~lthvi~~~ed~~~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatL 254 (596)
T KOG1177|consen 175 VMRGDPGQLKSELLPELTHVILADEDHPLPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATL 254 (596)
T ss_pred hhcCCCccccccccccceEEEecCCCCcCCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceee
Confidence 44467788888888762 456778999888777666666666677889999999999999999999999
Q ss_pred chHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 112 THYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 112 sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
||.|++++......+.++.. ++++++..|+||.+|.+.+.++++..|+|+|++.+.|++.+.++.|.++|||.+++|
T Consensus 255 sH~~~~Nna~~vg~r~g~~e-~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gt 331 (596)
T KOG1177|consen 255 SHYNFLNNARAVGARAGYNE-KHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGT 331 (596)
T ss_pred ehhhhhhhHHHHHHHhCcCc-ceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecC
Confidence 99999999999999999998 899999999999999999999999999999998899999999999999999999986
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-27 Score=191.79 Aligned_cols=165 Identities=15% Similarity=0.149 Sum_probs=129.0
Q ss_pred CCCCCccchhhhhhccCCCCCCCCCCCCCCCCCCCCc--------EEEEeecCcccHHHHHhcCCCcchhhhhhhhccCC
Q psy13808 18 SQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKL--------TRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLN 89 (190)
Q Consensus 18 ~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~--------~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 89 (190)
.+.+++++++..++++++|+++|++......+....+ .+++.......|++++........ ....+
T Consensus 96 f~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~~~~~~~~~~~~~~~~------~~~~~ 169 (528)
T COG0365 96 SPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLGLWYDEAVEKASEKFE------FEPLP 169 (528)
T ss_pred ccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEeccccccHHHHhhccCCCCC------ccccC
Confidence 8999999999999999999999998844432221111 123322222667777765443321 23478
Q ss_pred CCCeEEEEecCCCCCCCceeEechHHHHHHHHHh-hhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCC
Q psy13808 90 CRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFI-GKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPS 168 (190)
Q Consensus 90 ~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~-~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~ 168 (190)
++|+++|+|||||||+||||+++|.++....... ...+.+.+ +|++++..+..|++|..+.++++|..|+++++++..
T Consensus 170 ~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~-~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~ 248 (528)
T COG0365 170 ADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLP-GDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGR 248 (528)
T ss_pred CCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCC-CCEEEeCCCchhhhCchHHHHHHHhcCCeEEEeCCC
Confidence 9999999999999999999999999877665544 45667776 999999999999999888899999999999998644
Q ss_pred C--ChHHHHHHHHHCCceEEecc
Q psy13808 169 F--KPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 169 ~--~~~~~~~~i~~~~iT~l~~t 189 (190)
. +++.+++.|++|++|+++++
T Consensus 249 p~~~~~~~~~~ie~~~vt~~~ts 271 (528)
T COG0365 249 PFYSPERLWEALEKYKVTIFGTS 271 (528)
T ss_pred CCCCHHHHHHHHHHhCCceEeeC
Confidence 3 39999999999999999864
|
|
| >KOG1176|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.6e-26 Score=186.50 Aligned_cols=168 Identities=24% Similarity=0.293 Sum_probs=122.9
Q ss_pred CCCCCccchhhhhhccCCCCCCCCCCCCCC-----CCCCCCcEEEEe--ecCcccHHHHHhcCC-Ccchhh--hhhhhcc
Q psy13808 18 SQPFRERTLSHQDKIRPGRESNPRPSAYKA-----DALPTKLTRLAL--RMGTFRLSDIMQGAG-PEYHRR--REQISKS 87 (190)
Q Consensus 18 ~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~-----~~~~~~~~~i~~--~~~~~~~~~l~~~~~-~~~~~~--~~~~~~~ 87 (190)
||.+++.|+.++++.++|+++||+.+.... ..+. ..++++ ..+.....++..... ...... .+.....
T Consensus 103 Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~--~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T KOG1176|consen 103 NPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA--LKIIVLTGDEGVISISDLVEDLDAFEDLMPEGLPDGIRP 180 (537)
T ss_pred CcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC--CceEEEecccCccccccccccccchhhccccCCCccccc
Confidence 999999999999999999999999984431 1111 333333 112222222222111 000000 0000244
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCC
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAP 167 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~ 167 (190)
...+|++.|+|||||||.||||++||+++..+.........+.. .|+.++.+|++|.+|+...+++.+..|+++++. +
T Consensus 181 ~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~-~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~-~ 258 (537)
T KOG1176|consen 181 VSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTS-DDVYLCTLPLFHIYGLITLLLSLLAGGTTIICL-R 258 (537)
T ss_pred CCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCC-CceEEEechHHHHhHHHHHHHHHHhCCceEEEC-C
Confidence 56799999999999999999999999999998877777777776 899999999999999877555566777777766 8
Q ss_pred CCChHHHHHHHHHCCceEEecc
Q psy13808 168 SFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 168 ~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.|+++.+++.|++|++|++.++
T Consensus 259 ~f~~~~~~~~i~kykvt~~~~v 280 (537)
T KOG1176|consen 259 KFDAELFLDLIEKYKVTHLFLV 280 (537)
T ss_pred CCCHHHHHHHHHHhCEEEEEcC
Confidence 8999999999999999999764
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-24 Score=184.65 Aligned_cols=165 Identities=12% Similarity=0.054 Sum_probs=120.6
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCCCC--CCC----CCCcEEEEeec------------C--cccHHHHHhcCCC
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAYKA--DAL----PTKLTRLALRM------------G--TFRLSDIMQGAGP 75 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~--~~~----~~~~~~i~~~~------------~--~~~~~~l~~~~~~ 75 (190)
|+||.++++++++++++++++++|++.+.+.. ... +.++.++.+.. + ..++++++.....
T Consensus 133 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (666)
T PLN02614 133 PLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEG 212 (666)
T ss_pred EecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHHHHHhhccc
Confidence 45999999999999999999999998752210 111 12445554421 0 1345555443211
Q ss_pred cchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhc-----CCcCCCcEEEEeCCchhHHHHHH
Q psy13808 76 EYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRL-----EFDKTDHKILLQVPMFHTFGTAM 150 (190)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~~~~~l~~~pl~h~~g~~~ 150 (190)
... ......++|+++|+|||||||.||||++||+|+...+......+ ++.+ +|++++.+|++|.++...
T Consensus 213 ~~~-----~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~-~d~~l~~lPl~H~~~~~~ 286 (666)
T PLN02614 213 KQY-----DLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTV-KDVYLSYLPLAHIFDRVI 286 (666)
T ss_pred CCC-----CCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCC-CcEEEEeccHHHHHHHHH
Confidence 100 01234679999999999999999999999999998766543332 4566 899999999999999754
Q ss_pred HHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 151 GILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 151 ~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.+..+..|+++++. + +++..+++.|+++++|+++++
T Consensus 287 -~~~~l~~G~~v~~~-~-~~~~~~~~~i~~~~~T~~~~v 322 (666)
T PLN02614 287 -EECFIQHGAAIGFW-R-GDVKLLIEDLGELKPTIFCAV 322 (666)
T ss_pred -HHHHHHhCCEEEEe-C-CCHHHHHHHHHHhCCeEEEec
Confidence 56678899999987 3 699999999999999999864
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-24 Score=182.01 Aligned_cols=165 Identities=15% Similarity=0.122 Sum_probs=127.9
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCCC-----CCCCCCCcEEEEeec--------------CcccHHHHHhcCCCc
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAYK-----ADALPTKLTRLALRM--------------GTFRLSDIMQGAGPE 76 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~~~~~~~~i~~~~--------------~~~~~~~l~~~~~~~ 76 (190)
|+||.++++++.+++++++++++|++.+... ..+++.++.+++... ...+|++++......
T Consensus 132 pl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (651)
T PLN02736 132 PLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSS 211 (651)
T ss_pred EeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccC
Confidence 5599999999999999999999999876322 123455565555411 123455555432211
Q ss_pred chhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHH
Q psy13808 77 YHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAM 156 (190)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l 156 (190)
.. ......++|+++|+|||||||.||||++||+++..+.......+++.+ +|++++.+|++|.+++. .++.++
T Consensus 212 ~~-----~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~-~d~~l~~lPl~h~~~~~-~~~~~l 284 (651)
T PLN02736 212 PQ-----PFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYP-SDVHISYLPLAHIYERV-NQIVML 284 (651)
T ss_pred CC-----CCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCC-CCEEEEeCCHHHHHHHH-HHHHHH
Confidence 10 112346899999999999999999999999999988887777778887 99999999999999975 477889
Q ss_pred HhCCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 157 NHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 157 ~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..|+++++.+ .++..+++.|+++++|+++++
T Consensus 285 ~~G~~i~~~~--~~~~~~~~~i~~~~~t~~~~v 315 (651)
T PLN02736 285 HYGVAVGFYQ--GDNLKLMDDLAALRPTIFCSV 315 (651)
T ss_pred HcCCEEEEeC--CCHHHHHHHHHHhCCcEEecc
Confidence 9999999873 488999999999999998864
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-24 Score=178.91 Aligned_cols=175 Identities=18% Similarity=0.128 Sum_probs=121.1
Q ss_pred ccccccCCCCCCccchhhhhhccCCCCCCCCCCCCCC------CCCCCCcEEEEe--------ecCcccHHHHHhcCCC-
Q psy13808 11 KEDRIGESQPFRERTLSHQDKIRPGRESNPRPSAYKA------DALPTKLTRLAL--------RMGTFRLSDIMQGAGP- 75 (190)
Q Consensus 11 ~~~~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~------~~~~~~~~~i~~--------~~~~~~~~~l~~~~~~- 75 (190)
.+--||+.+.++++++++.|+.++++++|++.+.+.. ...+....++.. ......++........
T Consensus 94 g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (613)
T COG1022 94 GAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISL 173 (613)
T ss_pred CCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhccccccccccchh
Confidence 3455777999999999999999999999999972221 111111111110 0000011110000000
Q ss_pred --cchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcC-CcCCCcEEEEeCCchhHHHHHHHH
Q psy13808 76 --EYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLE-FDKTDHKILLQVPMFHTFGTAMGI 152 (190)
Q Consensus 76 --~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-~~~~~~~~l~~~pl~h~~g~~~~~ 152 (190)
..............++|++.|+|||||||.|||||+||+|+++++........ ..+ +|+.++++|+.|++...+..
T Consensus 174 ~~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~-~d~~LsfLPlaHi~Er~~~~ 252 (613)
T COG1022 174 FLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGP-GDRVLSFLPLAHIFERAFEG 252 (613)
T ss_pred hhhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCC-CcEEEEeCcHHHHHHHHHHH
Confidence 00000000113568999999999999999999999999999999999888886 777 99999999999999988755
Q ss_pred HHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 153 LNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 153 ~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
...+..|+++... .++..+++.++++|+|++++.
T Consensus 253 ~~~~~~g~~~~~~---~~~~~~~~dl~~~rPt~m~~V 286 (613)
T COG1022 253 GLALYGGVTVLFK---EDPRTLLEDLKEVRPTVMIGV 286 (613)
T ss_pred HHHhhcceEEEec---CCHHHHHHHHHHhCCeEEeec
Confidence 5555666555554 699999999999999999864
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=175.45 Aligned_cols=167 Identities=27% Similarity=0.332 Sum_probs=128.0
Q ss_pred CCCCCCccchhhhhhccCCCCCCCCCCCCC-----CCCCCCCcEEEEee--cCc--ccHHHHHhcCCCcchhhhhhhhcc
Q psy13808 17 ESQPFRERTLSHQDKIRPGRESNPRPSAYK-----ADALPTKLTRLALR--MGT--FRLSDIMQGAGPEYHRRREQISKS 87 (190)
Q Consensus 17 i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~~~~~~~~i~~~--~~~--~~~~~l~~~~~~~~~~~~~~~~~~ 87 (190)
+||.++.+++.++++.+++++++++..... ....+....++... ... ..++++.......... ...
T Consensus 93 ln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 167 (534)
T COG0318 93 LNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLPITLEALAAEGPGPDAD-----ARP 167 (534)
T ss_pred cCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEecccccccccccHHHHhhccCCcccc-----cCC
Confidence 399999999999999999999999987111 11112222222221 111 2456664433222111 112
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcC--CcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEc
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLE--FDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVP 165 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~ 165 (190)
.+++|+++|+|||||||.||||++||+|++.+.......++ +.+ +|++++.+|+||.+|+...++.++..|+++++.
T Consensus 168 ~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~-~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~ 246 (534)
T COG0318 168 VDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTP-DDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLL 246 (534)
T ss_pred CCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCC-CceEEEecChHHHHHHHHHHHHHHHcCCEEEeC
Confidence 67899999999999999999999999999999888888887 777 899999999999999888788889999999998
Q ss_pred CC-CCChHHHHHHHHHCCceEEecc
Q psy13808 166 AP-SFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 166 ~~-~~~~~~~~~~i~~~~iT~l~~t 189 (190)
++ .|+++.++..++++++|++.++
T Consensus 247 ~~~~f~~~~~~~~i~~~~~t~~~~v 271 (534)
T COG0318 247 SPEPFDPEEVLWLIEKYKVTVLSGV 271 (534)
T ss_pred CCCCcCHHHHHHHHHHhcceEEecc
Confidence 43 6999999999999999998764
|
|
| >KOG1179|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-24 Score=173.06 Aligned_cols=168 Identities=20% Similarity=0.260 Sum_probs=132.1
Q ss_pred CCCCCccchhhhhhccCCCCCCCCCCCCCC--CCCCCCcE--EEEe----ecCcccHHHHHhcCCCcchhhhh-hhhccC
Q psy13808 18 SQPFRERTLSHQDKIRPGRESNPRPSAYKA--DALPTKLT--RLAL----RMGTFRLSDIMQGAGPEYHRRRE-QISKSL 88 (190)
Q Consensus 18 ~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~--~~~~~~~~--~i~~----~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~ 88 (190)
|++++.+-|.|.++.+++++++++++.+.. +.+|.+.. +-+. .......+++.......+..+.+ ......
T Consensus 160 NtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~~g~~~L~~~l~~~~~~~vp~~~~~~~ 239 (649)
T KOG1179|consen 160 NTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVPDGIESLLAKLSAAPKHPVPVSTRSGL 239 (649)
T ss_pred ccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCCchHHHHHHhhcccccCCCCcccCCCc
Confidence 999999999999999999999999984431 11233321 2222 11222344555444333322222 233456
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCC
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPS 168 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~ 168 (190)
...++++++|||||||.||.++++|..+......+...+++++ +|+++..+|+||..|.++++.+++..|+|+|+- .+
T Consensus 240 ~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~-~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~Vlr-kK 317 (649)
T KOG1179|consen 240 TFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTA-DDVVYTTLPLYHSAAGILGIGGCLLHGATVVLR-KK 317 (649)
T ss_pred cccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCc-cceEEEcchhHHHHHHHHHHHHHHhcCceEEEe-cc
Confidence 6778999999999999999999999999988777788899998 999999999999999999999999999999998 89
Q ss_pred CChHHHHHHHHHCCceEEe
Q psy13808 169 FKPMDSLRAIAKEKCMEYL 187 (190)
Q Consensus 169 ~~~~~~~~~i~~~~iT~l~ 187 (190)
|++.++|+..++|+||+..
T Consensus 318 FSAS~FW~DC~k~~~Tv~Q 336 (649)
T KOG1179|consen 318 FSASNFWDDCRKYNVTVIQ 336 (649)
T ss_pred cchhhhHHHHHHhCCeeee
Confidence 9999999999999999864
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-23 Score=175.21 Aligned_cols=176 Identities=13% Similarity=0.047 Sum_probs=125.5
Q ss_pred cccccCCCCCCccchhhhhhccCCCCCCCCCCCC------C-CC---CCCCCcEEEEee-c---------CcccHHHHHh
Q psy13808 12 EDRIGESQPFRERTLSHQDKIRPGRESNPRPSAY------K-AD---ALPTKLTRLALR-M---------GTFRLSDIMQ 71 (190)
Q Consensus 12 ~~~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~------~-~~---~~~~~~~~i~~~-~---------~~~~~~~l~~ 71 (190)
+..|++|+.++++|+.++|++++++++|++.... . .. .....+.++... . +...+++++.
T Consensus 19 av~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (499)
T PLN03051 19 CVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGEPVAVPLREQDLSWCDFLG 98 (499)
T ss_pred CEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCcccCCccccCcccHHHHHh
Confidence 5678999999999999999999999999986421 0 00 001112222211 0 1234555543
Q ss_pred cCCCcc-hhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHH
Q psy13808 72 GAGPEY-HRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAM 150 (190)
Q Consensus 72 ~~~~~~-~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~ 150 (190)
...... ............++|+++|+|||||||.||||+++|++++.+.......+++.+ +|++++.+|++|..++ +
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~-~d~~l~~~pl~h~~g~-~ 176 (499)
T PLN03051 99 VAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQP-GDVVCWPTNLGWMMGP-W 176 (499)
T ss_pred hhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCCCC-CCEEEEccCcceeeeh-H
Confidence 211100 000000012235689999999999999999999999998876655555667777 8999999999999985 4
Q ss_pred HHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 151 GILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 151 ~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.++.++..|+++++.+..++++.+++.|+++++|++.++
T Consensus 177 ~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~v 215 (499)
T PLN03051 177 LLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLV 215 (499)
T ss_pred HHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeC
Confidence 578899999999998545889999999999999999864
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=181.02 Aligned_cols=170 Identities=15% Similarity=0.049 Sum_probs=120.4
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCCC-----CCCCCCCcEEEEeecCc---------------------------
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAYK-----ADALPTKLTRLALRMGT--------------------------- 63 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~~~~~~~~i~~~~~~--------------------------- 63 (190)
|+++.++++++.++|+++++++++++.+.+. ...++.++.+++++...
T Consensus 159 pl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (746)
T PTZ00342 159 VMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNK 238 (746)
T ss_pred EecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhccCCCceEEEEECCCCccccccccccccccccccccccccccc
Confidence 4499999999999999999999999765322 23456777777652100
Q ss_pred ---------------------------ccHHHHHhcCCCc--c---hhhh------hhhhccCCCCCeEEEEecCCCCCC
Q psy13808 64 ---------------------------FRLSDIMQGAGPE--Y---HRRR------EQISKSLNCRDGINIQFTSGTTGH 105 (190)
Q Consensus 64 ---------------------------~~~~~l~~~~~~~--~---~~~~------~~~~~~~~~~~~~~i~~TSGTTG~ 105 (190)
..|.++....... . .... ........++|+++|+|||||||.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiYTSGTTG~ 318 (746)
T PTZ00342 239 EEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGK 318 (746)
T ss_pred ccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhcccCCCCCCCCccceEEEEEcCCCCCC
Confidence 0011111110000 0 0000 001123568999999999999999
Q ss_pred CceeEechHHHHHHHHHhhhhc--CCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCc
Q psy13808 106 PKAAFLTHYNLINNSNFIGKRL--EFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183 (190)
Q Consensus 106 PKgv~~sh~~~~~~~~~~~~~~--~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~i 183 (190)
||||++||+|+++.+....... .... .+++++++|++|++++.. .+.++..|+++++.+ . ++..+++.|+++++
T Consensus 319 PKGVmlTH~nl~~~~~~~~~~~~~~~~~-~d~~ls~LPL~Hi~~~~~-~~~~l~~G~~i~~~~-~-~~~~l~~di~~~~p 394 (746)
T PTZ00342 319 PKGVMLSNKNLYNTVVPLCKHSIFKKYN-PKTHLSYLPISHIYERVI-AYLSFMLGGTINIWS-K-DINYFSKDIYNSKG 394 (746)
T ss_pred CCEEEEccHHHHHHHHHHhhcccccCCC-CCeEEEeCcHHHHHHHHH-HHHHHHcCCEEEEeC-C-CHHHHHHHHHHhCC
Confidence 9999999999998776544322 1223 689999999999999765 567899999999983 3 89999999999999
Q ss_pred eEEecc
Q psy13808 184 MEYLTK 189 (190)
Q Consensus 184 T~l~~t 189 (190)
|+++++
T Consensus 395 T~~~~V 400 (746)
T PTZ00342 395 NILAGV 400 (746)
T ss_pred cEEEch
Confidence 999863
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-23 Score=178.00 Aligned_cols=165 Identities=13% Similarity=0.068 Sum_probs=121.8
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCC-----CCCC-CCCcEEEEeecC--------------cccHHHHHhcCC
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYK-----ADAL-PTKLTRLALRMG--------------TFRLSDIMQGAG 74 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~~-~~~~~~i~~~~~--------------~~~~~~l~~~~~ 74 (190)
||++|.++++++.++|++++++++|++.+.+. .... +.++.++.+... ..+|.+++....
T Consensus 130 vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (660)
T PLN02861 130 VPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGS 209 (660)
T ss_pred EEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCc
Confidence 35599999999999999999999999865321 1111 235555544210 134555544321
Q ss_pred CcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcC-----CcCCCcEEEEeCCchhHHHHH
Q psy13808 75 PEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLE-----FDKTDHKILLQVPMFHTFGTA 149 (190)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~h~~g~~ 149 (190)
... ......++|+++|+|||||||.||||++||+++..........++ +.+ +|++++.+|++|.++..
T Consensus 210 ~~~------~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~-~d~~l~~lPl~H~~~~~ 282 (660)
T PLN02861 210 LDC------ELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATE-EDSYFSYLPLAHVYDQV 282 (660)
T ss_pred ccC------CCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCC-CCEEEEECcHHHHHHHH
Confidence 110 112346899999999999999999999999999987665544433 345 89999999999999976
Q ss_pred HHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 150 MGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 150 ~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+ .+.++..|+++++. ++++..+++.|+++++|+++++
T Consensus 283 ~-~~~~l~~G~~v~~~--~~~~~~~~~~i~~~~~T~~~~v 319 (660)
T PLN02861 283 I-ETYCISKGASIGFW--QGDIRYLMEDVQALKPTIFCGV 319 (660)
T ss_pred H-HHHHHHhCCEEEEe--CCCHHHHHHHHHHhCCcEEeec
Confidence 6 45579999999987 3689999999999999999864
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-23 Score=176.78 Aligned_cols=167 Identities=13% Similarity=0.061 Sum_probs=120.5
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCCCCCCCC------------------CCcEEEEeec--------------Cc
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAYKADALP------------------TKLTRLALRM--------------GT 63 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~------------------~~~~~i~~~~--------------~~ 63 (190)
++++.++++++.+++++++|+++|++.......+.. ....++.... ..
T Consensus 174 pv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (666)
T PLN02654 174 VVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQEGRD 253 (666)
T ss_pred ecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccccccccccccccCCc
Confidence 458999999999999999999999987633211100 0111111110 01
Q ss_pred ccHHHHHhcCCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHH-HHHhhhhcCCcCCCcEEEEeCCc
Q psy13808 64 FRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINN-SNFIGKRLEFDKTDHKILLQVPM 142 (190)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~-~~~~~~~~~~~~~~~~~l~~~pl 142 (190)
..|++++..... ......++++|+++|+|||||||.||||+++|++++.. .......+++.+ +|++++..|+
T Consensus 254 ~~~~~~~~~~~~------~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~ 326 (666)
T PLN02654 254 VWWQDVVPNYPT------KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKP-TDVYWCTADC 326 (666)
T ss_pred ccHHHHhhcCCC------CCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCC-CcEEEEcCCc
Confidence 112333221110 01122357899999999999999999999999998643 344556678887 9999999999
Q ss_pred hhHHHHHHHHHHHHHhCCEEEEcCC---CCChHHHHHHHHHCCceEEecc
Q psy13808 143 FHTFGTAMGILNAMNHGSTTVVPAP---SFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 143 ~h~~g~~~~~~~~l~~G~~vv~~~~---~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+|.+|..+.++.+|..|++++++++ .++++.+++.|++|++|+++++
T Consensus 327 ~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~ 376 (666)
T PLN02654 327 GWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTA 376 (666)
T ss_pred hhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeC
Confidence 9999987778899999999999853 2589999999999999999763
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-23 Score=178.07 Aligned_cols=171 Identities=17% Similarity=0.144 Sum_probs=122.7
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCCCCCC-CCC--------CcEEEEee-----------cCcccHHHHHhcCCC
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAYKADA-LPT--------KLTRLALR-----------MGTFRLSDIMQGAGP 75 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~-~~~--------~~~~i~~~-----------~~~~~~~~l~~~~~~ 75 (190)
+++|.++++++.+++++++|+++|+++......+ .+. ...++++. .....|++++.....
T Consensus 262 pi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (728)
T PLN03052 262 SIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIVLPADGKSVRVKLREGDMSWDDFLARANG 341 (728)
T ss_pred eeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCCcEEEEeCCCCccccccccCCccHHHHHhcccc
Confidence 4489999999999999999999999875321110 000 01122221 123456666543211
Q ss_pred cchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHH
Q psy13808 76 EYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155 (190)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~ 155 (190)
.... .........++++++|+|||||||+||||+++|.+++.........+++.+ +|++++..|++|.++. +.++.+
T Consensus 342 ~~~~-~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~-~d~~~~~~~l~w~~g~-~~v~~~ 418 (728)
T PLN03052 342 LRRP-DEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRK-GDIVCWPTNLGWMMGP-WLVYAS 418 (728)
T ss_pred cccc-ccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCC-CcEEEECCCcHHHhHH-HHHHHH
Confidence 0000 000112235689999999999999999999999998776655555577877 9999999999999995 567899
Q ss_pred HHhCCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 156 MNHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 156 l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
|..|++++++++.+++..+++.++++++|++.++
T Consensus 419 L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~ 452 (728)
T PLN03052 419 LLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTV 452 (728)
T ss_pred HHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEEC
Confidence 9999999999655677889999999999999864
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-23 Score=174.76 Aligned_cols=168 Identities=11% Similarity=0.022 Sum_probs=123.3
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCCCCC--------------C-CCCCcEEEEeec----------CcccHHHHH
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAYKAD--------------A-LPTKLTRLALRM----------GTFRLSDIM 70 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~--------------~-~~~~~~~i~~~~----------~~~~~~~l~ 70 (190)
+++|.++++++.+++++++|+++|++....... . .+....++++.. ....+.++.
T Consensus 137 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 216 (628)
T TIGR02316 137 VVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMRLIPGRDVDYAALR 216 (628)
T ss_pred ecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCccccHHHHh
Confidence 558999999999999999999999986522110 0 122334444421 123445444
Q ss_pred hcCCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHH-HHHhhhhcCCcCCCcEEEEeCCchhHHHHH
Q psy13808 71 QGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINN-SNFIGKRLEFDKTDHKILLQVPMFHTFGTA 149 (190)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~-~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~ 149 (190)
....... .+.....++++++|+|||||||.||||+++|.++... .......+++.+ +|++++..|++|..|..
T Consensus 217 ~~~~~~~-----~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~g~~ 290 (628)
T TIGR02316 217 TQHEDAQ-----VPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRA-GQVMFSASDVGWVVGHS 290 (628)
T ss_pred hccccCC-----CCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCC-CcEEEEcCCCCeeehhh
Confidence 3321110 0112356799999999999999999999999997643 344455677877 89999999999999877
Q ss_pred HHHHHHHHhCCEEEEcCC---CCChHHHHHHHHHCCceEEecc
Q psy13808 150 MGILNAMNHGSTTVVPAP---SFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 150 ~~~~~~l~~G~~vv~~~~---~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+.++.+|..|+++++++. .+++..+++.|+++++|+++++
T Consensus 291 ~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~ 333 (628)
T TIGR02316 291 YIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSA 333 (628)
T ss_pred HHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeC
Confidence 778999999999999853 3589999999999999998764
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8e-23 Score=172.46 Aligned_cols=168 Identities=21% Similarity=0.281 Sum_probs=132.4
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCCC---CCCCCCcEEEEee------cCcccHHHHHhcCCCcchhhhhhhh
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYKA---DALPTKLTRLALR------MGTFRLSDIMQGAGPEYHRRREQIS 85 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~---~~~~~~~~~i~~~------~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (190)
|+++|.++++++.++++.+++++++++...... ..++..+.++... .+..++.+++....... ..
T Consensus 126 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 199 (570)
T PRK04319 126 GPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPADDLPSLKHVLLVGEDVEEGPGTLDFNALMEQASDEF------DI 199 (570)
T ss_pred cccccccCHHHHHHHHHccCCcEEEEChhhhhccchhcCCCceEEEEECCCcCCCcCccCHHHHHhhcCCcC------Cc
Confidence 355899999999999999999999998773321 2344555555441 12245555554332211 11
Q ss_pred ccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEc
Q psy13808 86 KSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVP 165 (190)
Q Consensus 86 ~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~ 165 (190)
....++++++++|||||||.||||+++|+++..........+++.+ +|++++..|++|.+|..+.++.++..|+++++.
T Consensus 200 ~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~ 278 (570)
T PRK04319 200 EWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHE-DDVYWCTADPGWVTGTSYGIFAPWLNGATNVID 278 (570)
T ss_pred cccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCC-CceEEecCChHHhhCchHHHHHHHhcCceEEEE
Confidence 2346789999999999999999999999999988777777778887 999999999999999888899999999999998
Q ss_pred CCCCChHHHHHHHHHCCceEEecc
Q psy13808 166 APSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 166 ~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+..++++.+++.|+++++|+++++
T Consensus 279 ~~~~~~~~~~~~i~~~~~t~~~~~ 302 (570)
T PRK04319 279 GGRFSPERWYRILEDYKVTVWYTA 302 (570)
T ss_pred CCCCCHHHHHHHHHHcCCeEEEeC
Confidence 668999999999999999998763
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-22 Score=170.42 Aligned_cols=175 Identities=16% Similarity=0.078 Sum_probs=124.5
Q ss_pred cccCCCCCCccchhhhhhccCCCCCCCCCCCCCC-CCC----C-CCcEEEEeec--CcccHHHHHhcCC--Ccchhhh--
Q psy13808 14 RIGESQPFRERTLSHQDKIRPGRESNPRPSAYKA-DAL----P-TKLTRLALRM--GTFRLSDIMQGAG--PEYHRRR-- 81 (190)
Q Consensus 14 ~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~-~~~----~-~~~~~i~~~~--~~~~~~~l~~~~~--~~~~~~~-- 81 (190)
-|++||.++.+++.++|+++++++++++.+.... .+. . ....++.... ....+.+...... ..+....
T Consensus 94 ~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (539)
T PRK06334 94 PVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKELSFWEKCRIGIYMSIPFEWLMR 173 (539)
T ss_pred eEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhhccHHHhhhhhhhhcCCchhhhh
Confidence 4566999999999999999999999998752211 000 0 0112332211 1111111111000 0000000
Q ss_pred hhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCE
Q psy13808 82 EQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGST 161 (190)
Q Consensus 82 ~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~ 161 (190)
.......+++++++|+|||||||.||||+++|+++..+.......+++.+ +|++++.+|++|.+|+...++.++..|++
T Consensus 174 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~-~d~~l~~~p~~h~~g~~~~~~~~l~~G~~ 252 (539)
T PRK06334 174 WFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKE-DDVMMSFLPPFHAYGFNSCTLFPLLSGVP 252 (539)
T ss_pred cccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCC-CceEEEecchHhhhhhHHHHHHHHHcCCe
Confidence 00012357799999999999999999999999999988777667777877 99999999999999987777889999999
Q ss_pred EEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 162 TVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 162 vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+++....++++.+++.|+++++|++.++
T Consensus 253 vv~~~~~~~~~~~~~~i~~~~~t~~~~~ 280 (539)
T PRK06334 253 VVFAYNPLYPKKIVEMIDEAKVTFLGST 280 (539)
T ss_pred EEEecCCCCHHHHHHHHHHhCCcEEEec
Confidence 9997556899999999999999999764
|
|
| >KOG1256|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.3e-23 Score=169.84 Aligned_cols=171 Identities=15% Similarity=0.117 Sum_probs=133.9
Q ss_pred ccccccCCCCCCccchhhhhhccCCCCCCCCCC-CC----C---CCCCCCCcEEEEe----------ecC----cccHHH
Q psy13808 11 KEDRIGESQPFRERTLSHQDKIRPGRESNPRPS-AY----K---ADALPTKLTRLAL----------RMG----TFRLSD 68 (190)
Q Consensus 11 ~~~~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~-~~----~---~~~~~~~~~~i~~----------~~~----~~~~~~ 68 (190)
.+--||+...+++++++++++.++..++|++.+ .+ . ...+|.++.+|.+ ... ..+|++
T Consensus 157 ~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv~v~S~~e 236 (691)
T KOG1256|consen 157 SLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNGVEVYSWDE 236 (691)
T ss_pred CCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCCeEEEEHHH
Confidence 355789999999999999999999999999965 11 1 1247888988887 122 678999
Q ss_pred HHhcCCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHh--hhhc----CCcCCCcEEEEeCCc
Q psy13808 69 IMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFI--GKRL----EFDKTDHKILLQVPM 142 (190)
Q Consensus 69 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~--~~~~----~~~~~~~~~l~~~pl 142 (190)
++..+....... .....|+|.+.|.|||||||.|||||+||+|++...... .... .... +|++++++||
T Consensus 237 ~~~lG~~~~~~~----~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~-~dv~lSyLPL 311 (691)
T KOG1256|consen 237 FEELGKKNQRKP----RVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVG-DDVYLSYLPL 311 (691)
T ss_pred HHhhcccccCCC----CCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhccccccccc-CceEEEeCcH
Confidence 999886443221 135689999999999999999999999999999854321 1111 2222 7999999999
Q ss_pred hhHHHHHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 143 FHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 143 ~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.|++..++..+ .+..|+++.+. +-|+..+.+.+++.++|++.+.
T Consensus 312 AHi~er~~~~~-~~~~G~~IgF~--~gD~~~l~~dlk~lkPT~f~~V 355 (691)
T KOG1256|consen 312 AHIFERVVELY-TFYIGAKIGFA--RGDILKLTDDLKELKPTVFPGV 355 (691)
T ss_pred HHHHHHHHHHh-HhhcccEEEEe--cCChHHHHHHHHHhCCcEEecc
Confidence 99999888644 45889999998 3799999999999999998764
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-22 Score=169.34 Aligned_cols=173 Identities=14% Similarity=0.116 Sum_probs=129.2
Q ss_pred cccccCCCCCCccchhhhhhccCCCCCCCCCCCCC----------CCCCCCCcEEEEeec--------------------
Q psy13808 12 EDRIGESQPFRERTLSHQDKIRPGRESNPRPSAYK----------ADALPTKLTRLALRM-------------------- 61 (190)
Q Consensus 12 ~~~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~----------~~~~~~~~~~i~~~~-------------------- 61 (190)
|.-++|||.++++++.++++.+++++++++..... ....+..+.++.+..
T Consensus 107 Gi~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (632)
T PRK07529 107 GIANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRKAH 186 (632)
T ss_pred CEEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCcccccccccccccccccccc
Confidence 33457899999999999999999999999865321 123345555554311
Q ss_pred -CcccHHHHHhcCCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeC
Q psy13808 62 -GTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQV 140 (190)
Q Consensus 62 -~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~ 140 (190)
+...+.+.+........ .......++++++|+|||||||.||+|+++|+++..+.......+++.+ ++++++.+
T Consensus 187 ~~~~~~~~~~~~~~~~~~----~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~-~d~~l~~~ 261 (632)
T PRK07529 187 ARILDFDAELARQPGDRL----FSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGP-GDTVFCGL 261 (632)
T ss_pred cccCCHHHHHhcCCCccc----cccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCC-CCEEEEec
Confidence 12244444443221110 0112346799999999999999999999999999988877777777777 99999999
Q ss_pred CchhHHHHHHHHHHHHHhCCEEEEcCC-CC----ChHHHHHHHHHCCceEEecc
Q psy13808 141 PMFHTFGTAMGILNAMNHGSTTVVPAP-SF----KPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 141 pl~h~~g~~~~~~~~l~~G~~vv~~~~-~~----~~~~~~~~i~~~~iT~l~~t 189 (190)
|++|.++....++.++..|+++++.++ .+ ....+++.++++++|++.++
T Consensus 262 pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~ 315 (632)
T PRK07529 262 PLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGV 315 (632)
T ss_pred CchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeH
Confidence 999999988788999999999999743 12 24689999999999998763
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=99.89 E-value=5e-22 Score=170.14 Aligned_cols=163 Identities=15% Similarity=0.109 Sum_probs=118.5
Q ss_pred CCCCCccchhhhhhccCCCCCCCCCCCCC--------------CCCCCCCcEEEEee------------cCcccHHHHHh
Q psy13808 18 SQPFRERTLSHQDKIRPGRESNPRPSAYK--------------ADALPTKLTRLALR------------MGTFRLSDIMQ 71 (190)
Q Consensus 18 ~p~~~~~~l~~~l~~~~~~~i~~~~~~~~--------------~~~~~~~~~~i~~~------------~~~~~~~~l~~ 71 (190)
||.++++++.+++++++|+++|++..... ...++.++.++++. .+...|++++.
T Consensus 170 ~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (652)
T TIGR01217 170 SPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEAPKIDGALDLEDFTA 249 (652)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCcccccccccCcccHHHHHh
Confidence 89999999999999999999999875221 12334455555431 12234555544
Q ss_pred cCCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHH-HHHHhhhhcCCcCCCcEEEEeCCchhHHHHHH
Q psy13808 72 GAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLIN-NSNFIGKRLEFDKTDHKILLQVPMFHTFGTAM 150 (190)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~-~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~ 150 (190)
....... ......++++++|+|||||||.||||+++|++++. ........+++.+ +|++++..|++|..+ .+
T Consensus 250 ~~~~~~~-----~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~-~~ 322 (652)
T TIGR01217 250 AAQAAEL-----VFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGP-GDRLFYYTTTGWMMW-NW 322 (652)
T ss_pred cccCCCC-----CceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCC-CcEEEEeCCcchhhh-HH
Confidence 3211100 01234678999999999999999999999998754 3444455677887 899999999999864 33
Q ss_pred HHHHHHHhCCEEEEcCC--C-CChHHHHHHHHHCCceEEec
Q psy13808 151 GILNAMNHGSTTVVPAP--S-FKPMDSLRAIAKEKCMEYLT 188 (190)
Q Consensus 151 ~~~~~l~~G~~vv~~~~--~-~~~~~~~~~i~~~~iT~l~~ 188 (190)
++.+|..|++++++++ . .++..+++.++++++|++.+
T Consensus 323 -~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~ 362 (652)
T TIGR01217 323 -LVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGT 362 (652)
T ss_pred -HHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEec
Confidence 5689999999999842 2 37899999999999999754
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-21 Score=164.92 Aligned_cols=173 Identities=23% Similarity=0.215 Sum_probs=131.9
Q ss_pred cccCCCCCCccchhhhhhccCCCCCCCCCCCCC----------CCCCCCCcEEEEe-ecCcccHHHHHhcCCCcchhh--
Q psy13808 14 RIGESQPFRERTLSHQDKIRPGRESNPRPSAYK----------ADALPTKLTRLAL-RMGTFRLSDIMQGAGPEYHRR-- 80 (190)
Q Consensus 14 ~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~----------~~~~~~~~~~i~~-~~~~~~~~~l~~~~~~~~~~~-- 80 (190)
.|+++|.++.+++.++++++++++++++..... ...++..+.++.+ ..+..++.+++..........
T Consensus 107 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (547)
T PRK13295 107 LNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDGADSFEALLITPAWEQEPDAP 186 (547)
T ss_pred EeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCCCccCHHHHhhCCccccccccc
Confidence 456799999999999999999999999875211 1223444455544 223345666554321111000
Q ss_pred hhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCC
Q psy13808 81 REQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGS 160 (190)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~ 160 (190)
.........++++++|+|||||||.||||+++|+++..........+++.+ ++++++..|++|..++++.++.++..|+
T Consensus 187 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~-~~~~l~~~p~~h~~g~~~~~~~~l~~G~ 265 (547)
T PRK13295 187 AILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGA-DDVILMASPMAHQTGFMYGLMMPVMLGA 265 (547)
T ss_pred cccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCC-CCeEEEecCchhhhhHHHHHHHHHHcCC
Confidence 001112346789999999999999999999999999988877777788887 9999999999999998888999999999
Q ss_pred EEEEcCCCCChHHHHHHHHHCCceEEec
Q psy13808 161 TTVVPAPSFKPMDSLRAIAKEKCMEYLT 188 (190)
Q Consensus 161 ~vv~~~~~~~~~~~~~~i~~~~iT~l~~ 188 (190)
++++. +.++++.+++.++++++|++.+
T Consensus 266 ~~~~~-~~~~~~~~~~~l~~~~vt~~~~ 292 (547)
T PRK13295 266 TAVLQ-DIWDPARAAELIRTEGVTFTMA 292 (547)
T ss_pred eEEeC-CCCCHHHHHHHHHHcCCcEEEe
Confidence 99998 6889999999999999999865
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-22 Score=167.62 Aligned_cols=172 Identities=20% Similarity=0.209 Sum_probs=123.3
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCC------CCCCCCCcEEEEeecC----cccHHHHHhcCCCcch-hhhhh
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYK------ADALPTKLTRLALRMG----TFRLSDIMQGAGPEYH-RRREQ 83 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~------~~~~~~~~~~i~~~~~----~~~~~~l~~~~~~~~~-~~~~~ 83 (190)
+++||.++++++.++++++++++++++..... ...++....++..... ...+.+++........ .....
T Consensus 85 vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (563)
T PLN02860 85 APLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIFLNSFLTTEMLKQRALGTTE 164 (563)
T ss_pred EeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccccchhhccccchhccCcccccc
Confidence 34599999999999999999999999875211 1223333333333111 0111222111100000 00000
Q ss_pred hhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEE
Q psy13808 84 ISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTV 163 (190)
Q Consensus 84 ~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv 163 (190)
......++++++|+|||||||.||||+++|+++..+.......+++.+ +|+++...|++|.+|+. .++.++..|++++
T Consensus 165 ~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~-~d~~l~~~pl~h~~g~~-~~~~~l~~G~~~v 242 (563)
T PLN02860 165 LDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGE-DDVYLHTAPLCHIGGLS-SALAMLMVGACHV 242 (563)
T ss_pred ccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCC-CCEEEEecCchhhccHH-HHHHHHHcCceEE
Confidence 112346789999999999999999999999999887766666778887 89999999999999965 4788999999999
Q ss_pred EcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 164 VPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+. +.+++..+++.|+++++|++.++
T Consensus 243 ~~-~~~~~~~~~~~i~~~~vt~~~~~ 267 (563)
T PLN02860 243 LL-PKFDAKAALQAIKQHNVTSMITV 267 (563)
T ss_pred ec-CCCCHHHHHHHHHHhCCeeEEeC
Confidence 98 68999999999999999998764
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.9e-22 Score=167.85 Aligned_cols=170 Identities=19% Similarity=0.220 Sum_probs=120.6
Q ss_pred cCCCCCC-----ccchhhhhhccCCCCCCCCCCC-----CCCCCCCCCcEEEEeec-----CcccHHHHHhcCCCcchhh
Q psy13808 16 GESQPFR-----ERTLSHQDKIRPGRESNPRPSA-----YKADALPTKLTRLALRM-----GTFRLSDIMQGAGPEYHRR 80 (190)
Q Consensus 16 ~i~p~~~-----~~~l~~~l~~~~~~~i~~~~~~-----~~~~~~~~~~~~i~~~~-----~~~~~~~l~~~~~~~~~~~ 80 (190)
++||.++ .+++.++++++++++++++... +.... .....++.... +..++.+++........
T Consensus 123 pl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-- 199 (614)
T PRK08180 123 PVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVV-PADVEVVAVRGAVPGRAATPFAALLATPPTAAV-- 199 (614)
T ss_pred eeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhc-cCCceEEEecCCCCCcccccHHHHhccccccch--
Confidence 4588888 7999999999999999998641 11111 11122222211 12456666543211110
Q ss_pred hhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcC-CCcEEEEeCCchhHHHHHHHHHHHHHhC
Q psy13808 81 REQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDK-TDHKILLQVPMFHTFGTAMGILNAMNHG 159 (190)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~-~~~~~l~~~pl~h~~g~~~~~~~~l~~G 159 (190)
........++|+++|+|||||||.||||++||+++..+.......+++.. .++++++.+|++|.+|+.+.++.++..|
T Consensus 200 -~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G 278 (614)
T PRK08180 200 -DAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNLGIVLYNG 278 (614)
T ss_pred -hhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHHHhhHHHHHHHHHhcC
Confidence 01112346799999999999999999999999999988776666665531 2689999999999999877788899999
Q ss_pred CEEEEcCCCCCh---HHHHHHHHHCCceEEecc
Q psy13808 160 STTVVPAPSFKP---MDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 160 ~~vv~~~~~~~~---~~~~~~i~~~~iT~l~~t 189 (190)
+++++.+..+++ ..+++.++++++|+++++
T Consensus 279 ~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~v 311 (614)
T PRK08180 279 GTLYIDDGKPTPGGFDETLRNLREISPTVYFNV 311 (614)
T ss_pred CEEEEeCCCccchhHHHHHHHHHHhCCcEEech
Confidence 999997434554 477899999999998753
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=7e-22 Score=165.48 Aligned_cols=164 Identities=18% Similarity=0.207 Sum_probs=126.5
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCCC-CCC-CCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCCC
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYKA-DAL-PTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRD 92 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~-~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (190)
|++||.++.+++.++++++++++++++...... ..+ +... ++.. ....+.+++........ ......+++
T Consensus 82 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~l~~~~~~~~-----~~~~~~~~~ 153 (529)
T PRK07867 82 VGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLDPGVR-VINV--DSPAWADELAAHRDAEP-----PFRVADPDD 153 (529)
T ss_pred EEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhccCce-EEEe--ccccHHHHhcccCCCCC-----CcccCCccc
Confidence 466999999999999999999999999874331 111 1111 1221 12235554432211110 112356789
Q ss_pred eEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChH
Q psy13808 93 GINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPM 172 (190)
Q Consensus 93 ~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~ 172 (190)
+++++|||||||.||||+++|+++..+.......+++.. +|+++...|++|..++...++.++..|+++++. ++++++
T Consensus 154 ~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~-~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~-~~~~~~ 231 (529)
T PRK07867 154 LFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGP-DDVCYVSMPLFHSNAVMAGWAVALAAGASIALR-RKFSAS 231 (529)
T ss_pred eEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCc-ccEEEEecchhHHHHHHHHHHHHHhcCceEEec-CCCCHH
Confidence 999999999999999999999999988877778888887 999999999999999877778889999999998 789999
Q ss_pred HHHHHHHHCCceEEec
Q psy13808 173 DSLRAIAKEKCMEYLT 188 (190)
Q Consensus 173 ~~~~~i~~~~iT~l~~ 188 (190)
.+++.++++++|++.+
T Consensus 232 ~~~~~i~~~~vt~~~~ 247 (529)
T PRK07867 232 GFLPDVRRYGATYANY 247 (529)
T ss_pred HHHHHHHHhCCeEEec
Confidence 9999999999999864
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-21 Score=165.71 Aligned_cols=167 Identities=16% Similarity=0.181 Sum_probs=123.9
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCCCC--------------CCCCCCcEEEEeec----------CcccHHHHHh
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAYKA--------------DALPTKLTRLALRM----------GTFRLSDIMQ 71 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~--------------~~~~~~~~~i~~~~----------~~~~~~~l~~ 71 (190)
+++|.++.+++.+++++++++++++++..... ...+..+.+++... ....++++..
T Consensus 152 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (637)
T PRK00174 152 VVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVDWVEGRDLWWHELVA 231 (637)
T ss_pred ecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcCcCCCCcccHHHHHh
Confidence 45999999999999999999999998763211 11234445544311 1122444443
Q ss_pred cCCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHH-HhhhhcCCcCCCcEEEEeCCchhHHHHHH
Q psy13808 72 GAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSN-FIGKRLEFDKTDHKILLQVPMFHTFGTAM 150 (190)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~-~~~~~~~~~~~~~~~l~~~pl~h~~g~~~ 150 (190)
...... ......++++++|+|||||||.||||+++|++++.+.. .....+++.+ +|++++..|++|..+..+
T Consensus 232 ~~~~~~------~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~ 304 (637)
T PRK00174 232 GASDEC------EPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKD-GDVYWCTADVGWVTGHSY 304 (637)
T ss_pred hcCCCC------CccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCC-CcEEEEcCCchHhhhhHH
Confidence 221110 12345678999999999999999999999999875543 3344567777 899999999999999777
Q ss_pred HHHHHHHhCCEEEEcCC---CCChHHHHHHHHHCCceEEecc
Q psy13808 151 GILNAMNHGSTTVVPAP---SFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 151 ~~~~~l~~G~~vv~~~~---~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.++.+|..|+++++++. .++++.+++.|+++++|++.++
T Consensus 305 ~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~ 346 (637)
T PRK00174 305 IVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTA 346 (637)
T ss_pred HHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeec
Confidence 78999999999999742 2589999999999999998764
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-21 Score=165.35 Aligned_cols=167 Identities=17% Similarity=0.165 Sum_probs=123.1
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCCCC--------------CCCC-CCcEEEEeec----------CcccHHHHH
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAYKA--------------DALP-TKLTRLALRM----------GTFRLSDIM 70 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~--------------~~~~-~~~~~i~~~~----------~~~~~~~l~ 70 (190)
+++|.++++++.+++++++|+++|+++..... ...+ ..+.+++... ....+++++
T Consensus 142 ~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (625)
T TIGR02188 142 VVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVPWVEGRDVWWHDLM 221 (625)
T ss_pred ccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCcCccccccccHHHHH
Confidence 44899999999999999999999998763211 1122 3444444311 112244444
Q ss_pred hcCCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHH-HhhhhcCCcCCCcEEEEeCCchhHHHHH
Q psy13808 71 QGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSN-FIGKRLEFDKTDHKILLQVPMFHTFGTA 149 (190)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~-~~~~~~~~~~~~~~~l~~~pl~h~~g~~ 149 (190)
...... ......+++++++|+|||||||.||||+++|+++..+.. .....+++.+ +|++++..|++|..+..
T Consensus 222 ~~~~~~------~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~g~~ 294 (625)
T TIGR02188 222 AKASAY------CEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKD-GDIFWCTADVGWITGHS 294 (625)
T ss_pred hhcCCC------CCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCC-CcEEEECCCchhhhccH
Confidence 332111 112345778999999999999999999999999875443 3444567777 89999999999999877
Q ss_pred HHHHHHHHhCCEEEEcCC---CCChHHHHHHHHHCCceEEecc
Q psy13808 150 MGILNAMNHGSTTVVPAP---SFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 150 ~~~~~~l~~G~~vv~~~~---~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+.++.+|..|+++++++. .+++..+++.|+++++|++.++
T Consensus 295 ~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~ 337 (625)
T TIGR02188 295 YIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTA 337 (625)
T ss_pred HHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeC
Confidence 778999999999999842 2589999999999999998764
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=164.62 Aligned_cols=164 Identities=24% Similarity=0.206 Sum_probs=125.2
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCCC-----CCCCCCcEEEEee-------cCcccHHHHHhcCCCcchhhhh
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYKA-----DALPTKLTRLALR-------MGTFRLSDIMQGAGPEYHRRRE 82 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~-----~~~~~~~~~i~~~-------~~~~~~~~l~~~~~~~~~~~~~ 82 (190)
|++||.++.+++.++++++++++++++.+.... ...+....++... .+...+++++.......
T Consensus 127 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 201 (549)
T PRK07788 127 ILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGSTDETLDDLIAGSSTAP----- 201 (549)
T ss_pred EEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCccccCCcCcccHHHHhcCCCCCC-----
Confidence 344999999999999999999999998763221 1122222222211 23345666655322211
Q ss_pred hhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEE
Q psy13808 83 QISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTT 162 (190)
Q Consensus 83 ~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~v 162 (190)
....+++.++++|||||||.||||+++|+++..........+++.+ ++++++..|++|..|+.. ++.++..|+++
T Consensus 202 ---~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~-~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~ 276 (549)
T PRK07788 202 ---LPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRA-GETTLLPAPMFHATGWAH-LTLAMALGSTV 276 (549)
T ss_pred ---CCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCc-CCeEEEccchHHHHHHHH-HHHHHHhCCEE
Confidence 1234578899999999999999999999999988777777777877 899999999999999654 67789999999
Q ss_pred EEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 163 VVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 163 v~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
++. ..++++.+++.++++++|++.++
T Consensus 277 v~~-~~~~~~~~~~~i~~~~vt~~~~~ 302 (549)
T PRK07788 277 VLR-RRFDPEATLEDIAKHKATALVVV 302 (549)
T ss_pred EEC-CCCCHHHHHHHHHHhCCcEEEEH
Confidence 998 78999999999999999998864
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=166.41 Aligned_cols=173 Identities=16% Similarity=0.184 Sum_probs=126.8
Q ss_pred cccCCCCCCccchhhhhhccCCCCCCCCCCCCCC-----CCCCCCcEEEEeecC----cccHHHHHhcCCCcchhhhhhh
Q psy13808 14 RIGESQPFRERTLSHQDKIRPGRESNPRPSAYKA-----DALPTKLTRLALRMG----TFRLSDIMQGAGPEYHRRREQI 84 (190)
Q Consensus 14 ~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~-----~~~~~~~~~i~~~~~----~~~~~~l~~~~~~~~~~~~~~~ 84 (190)
-+++++.++.+++.++++.+++++++++.+.... ........++..... ...+.++.......+.. ....
T Consensus 114 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 192 (600)
T PRK08279 114 VALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDDPEGYEDLAAAAAGAPTT-NPAS 192 (600)
T ss_pred EeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCccccccccHHHHhhhcccCCcc-CCCc
Confidence 3455899999999999999999999998763221 111111222221111 12333433322111100 0111
Q ss_pred hccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 85 SKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 85 ~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
.....++++++|+|||||||.||||+++|+++.+++......+++.+ +|++++.+|++|.+|+...++.++..|+++++
T Consensus 193 ~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~-~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~ 271 (600)
T PRK08279 193 RSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTP-DDVLYCCLPLYHNTGGTVAWSSVLAAGATLAL 271 (600)
T ss_pred ccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCC-CcEEEEecCchhhhhHHHHHHHHHhcCcEEEE
Confidence 23346789999999999999999999999999998888777788887 99999999999999988777788889999999
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
. +.+++..+++.++++++|++.++
T Consensus 272 ~-~~~~~~~~~~~i~~~~~t~~~~~ 295 (600)
T PRK08279 272 R-RKFSASRFWDDVRRYRATAFQYI 295 (600)
T ss_pred c-CCCCHHHHHHHHHHhcceEEeeh
Confidence 8 78999999999999999998753
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-21 Score=161.30 Aligned_cols=173 Identities=20% Similarity=0.208 Sum_probs=130.4
Q ss_pred cccCCCCCCccchhhhhhccCCCCCCCCCCCCC----------CCCCCCCcEEEEee-cCcccHHHHHhcCCCcchhh--
Q psy13808 14 RIGESQPFRERTLSHQDKIRPGRESNPRPSAYK----------ADALPTKLTRLALR-MGTFRLSDIMQGAGPEYHRR-- 80 (190)
Q Consensus 14 ~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~----------~~~~~~~~~~i~~~-~~~~~~~~l~~~~~~~~~~~-- 80 (190)
-|+++|.++.+++.++++.++++++++++.... ...++..+.++... .+...+++++..........
T Consensus 105 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (538)
T TIGR03208 105 LNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGDDSFDRVLMTPERDDTPDAA 184 (538)
T ss_pred EeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCCCcCHHHHhhccccccccccc
Confidence 456799999999999999999999999875321 12233344444432 22334555543221111000
Q ss_pred hhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCC
Q psy13808 81 REQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGS 160 (190)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~ 160 (190)
.........++++++++|||||||.||||+++|+++...+......+++.. +|++++.+|++|..|+.+.++.++..|+
T Consensus 185 ~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~-~d~~l~~~pl~h~~g~~~~~~~~l~~g~ 263 (538)
T TIGR03208 185 AILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGG-GDVILMASPMAHQTGFMYGLMMPLILNA 263 (538)
T ss_pred cccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCC-CCeEEEeCCchhHHHHHHHHHHHHHcCC
Confidence 001112356789999999999999999999999999988877777778877 9999999999999998888899999999
Q ss_pred EEEEcCCCCChHHHHHHHHHCCceEEec
Q psy13808 161 TTVVPAPSFKPMDSLRAIAKEKCMEYLT 188 (190)
Q Consensus 161 ~vv~~~~~~~~~~~~~~i~~~~iT~l~~ 188 (190)
++++. +.+++..+++.++++++|++.+
T Consensus 264 ~~~~~-~~~~~~~~~~~l~~~~vt~~~~ 290 (538)
T TIGR03208 264 TAVLQ-DIWNPARAAELIRETGVTFTMA 290 (538)
T ss_pred EEEec-CccCHHHHHHHHHHhCCeEEec
Confidence 99998 6899999999999999999864
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-21 Score=163.74 Aligned_cols=164 Identities=20% Similarity=0.256 Sum_probs=125.0
Q ss_pred cccCCCCCCccchhhhhhccCCCCCCCCCCCCC---CCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCC
Q psy13808 14 RIGESQPFRERTLSHQDKIRPGRESNPRPSAYK---ADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNC 90 (190)
Q Consensus 14 ~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 90 (190)
.|+++|.++.+++.++++++++++++++..... ....+..+.+ .+. ...+.+++....... +.....+
T Consensus 79 ~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~i-~~~--~~~~~~~~~~~~~~~------~~~~~~~ 149 (540)
T PRK13388 79 LVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLDLPGVRVL-DVD--TPAYAELVAAAGALT------PHREVDA 149 (540)
T ss_pred EEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhcccCceEE-Ecc--chhhhhhhccccCcC------CCCCCCC
Confidence 345699999999999999999999999876332 1112233322 221 123444443221111 0123567
Q ss_pred CCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCC
Q psy13808 91 RDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFK 170 (190)
Q Consensus 91 ~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~ 170 (190)
+++++++|||||||.||||+++|+++..........+++.+ +|+++..+|++|..++...++.++..|+++++. +.++
T Consensus 150 ~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~-~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~-~~~~ 227 (540)
T PRK13388 150 MDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTR-DDVCYVSMPLFHSNAVMAGWAPAVASGAAVALP-AKFS 227 (540)
T ss_pred CCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCC-CCEEEEeeCchhhcchHHHHHHHHHcCcEEEEC-CCCC
Confidence 99999999999999999999999999988777777788887 999999999999998776666789999999988 6799
Q ss_pred hHHHHHHHHHCCceEEec
Q psy13808 171 PMDSLRAIAKEKCMEYLT 188 (190)
Q Consensus 171 ~~~~~~~i~~~~iT~l~~ 188 (190)
+..+++.++++++|++..
T Consensus 228 ~~~~~~~i~~~~vt~~~~ 245 (540)
T PRK13388 228 ASGFLDDVRRYGATYFNY 245 (540)
T ss_pred HHHHHHHHHHhCCeEEEe
Confidence 999999999999999864
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-21 Score=166.96 Aligned_cols=165 Identities=13% Similarity=0.017 Sum_probs=120.5
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCCC------CCCCCCCcEEEEeecC--------------cccHHHHHhcCCC
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAYK------ADALPTKLTRLALRMG--------------TFRLSDIMQGAGP 75 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~------~~~~~~~~~~i~~~~~--------------~~~~~~l~~~~~~ 75 (190)
|+++.++++++.++++.++++++|++..... ....+.++.++.+... ..+|++++..+..
T Consensus 130 pl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (660)
T PLN02430 130 PLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKE 209 (660)
T ss_pred EeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHhhcc
Confidence 4499999999999999999999999875211 1123445556554210 1345555543321
Q ss_pred cchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh-----cCCcCCCcEEEEeCCchhHHHHHH
Q psy13808 76 EYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR-----LEFDKTDHKILLQVPMFHTFGTAM 150 (190)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~-----~~~~~~~~~~l~~~pl~h~~g~~~ 150 (190)
... ......++|+++|+|||||||.||||++||+++..+....... .++.+ +|++++.+|++|.++..+
T Consensus 210 ~~~-----~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~-~d~~ls~lPl~H~~~~~~ 283 (660)
T PLN02430 210 NPS-----ETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTH-DDVYLSFLPLAHILDRMI 283 (660)
T ss_pred CCC-----CCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCC-CCEEEEeCcHHHHHHHHH
Confidence 110 0123468999999999999999999999999998876554322 14555 899999999999999766
Q ss_pred HHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 151 GILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 151 ~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
. +..+..|+++++.. .++..+++.|+++++|++.++
T Consensus 284 ~-~~~l~~G~~i~~~~--~~~~~l~~~l~~~~pt~~~~v 319 (660)
T PLN02430 284 E-EYFFRKGASVGYYH--GDLNALRDDLMELKPTLLAGV 319 (660)
T ss_pred H-HHHHHcCCEEEEeC--CChhhHHHHHHHhCCcEEEec
Confidence 4 55788999998873 378899999999999998763
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.5e-22 Score=170.68 Aligned_cols=170 Identities=16% Similarity=0.191 Sum_probs=122.7
Q ss_pred cccCCCCCCccchhhhhhccCCCCCCCCCCCCCCC---CC----CCCcEEEEeec--CcccHHHH--HhcCCCcchhhhh
Q psy13808 14 RIGESQPFRERTLSHQDKIRPGRESNPRPSAYKAD---AL----PTKLTRLALRM--GTFRLSDI--MQGAGPEYHRRRE 82 (190)
Q Consensus 14 ~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~---~~----~~~~~~i~~~~--~~~~~~~l--~~~~~~~~~~~~~ 82 (190)
.|++|+.+++++++++++++++++++++.+..... .. +.... +.+.. +...+.+. ........ .
T Consensus 282 ~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~----~ 356 (718)
T PRK08043 282 PAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRW-VYLEDLKDDVTTADKLWIFAHLLMP----R 356 (718)
T ss_pred ccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccE-EEhhhhhhhcchhHHHHHHHHHhCC----c
Confidence 34559999999999999999999999987633211 11 11122 22110 00111110 00000000 0
Q ss_pred hhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEE
Q psy13808 83 QISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTT 162 (190)
Q Consensus 83 ~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~v 162 (190)
.......++|+++++|||||||.||||+++|+++.+........+++.+ +|++++.+|++|.+|+...++.++..|+++
T Consensus 357 ~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~-~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~v 435 (718)
T PRK08043 357 LAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTP-NDRFMSALPLFHSFGLTVGLFTPLLTGAEV 435 (718)
T ss_pred cccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCc-cCeEEEcCcchhhhhhHHHHHHHHHcCCEE
Confidence 0012346789999999999999999999999999988777777778887 999999999999999877788999999999
Q ss_pred EEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 163 VVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 163 v~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
++.+..+++..+++.++++++|+++++
T Consensus 436 v~~~~~~~~~~~~~~i~~~~vt~~~~~ 462 (718)
T PRK08043 436 FLYPSPLHYRIVPELVYDRNCTVLFGT 462 (718)
T ss_pred EEeCCcccHHHHHHHHHhcCCeEEEch
Confidence 998545788899999999999998753
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-21 Score=161.22 Aligned_cols=173 Identities=27% Similarity=0.423 Sum_probs=128.4
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCCC-----------------------CCCCCCCcEEEEe----ecCcccHHH
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAYK-----------------------ADALPTKLTRLAL----RMGTFRLSD 68 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~-----------------------~~~~~~~~~~i~~----~~~~~~~~~ 68 (190)
+++|.++.+++.+++++++++++++++.... ...++....++.. ..+...|++
T Consensus 99 ~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (558)
T PRK12583 99 NINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAPPPGFLAWHE 178 (558)
T ss_pred ecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCCCccccchHh
Confidence 5689999999999999999999998764211 1112222333332 112234444
Q ss_pred HHhcCCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHH
Q psy13808 69 IMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGT 148 (190)
Q Consensus 69 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~ 148 (190)
+....................++++++++|||||||.||||+++|+++..++......+++.+ +|++++..|++|.+|.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~-~d~~~~~~p~~~~~g~ 257 (558)
T PRK12583 179 LQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTE-HDRLCVPVPLYHCFGM 257 (558)
T ss_pred hhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCC-CCeEEEecCchhhhhH
Confidence 443322111111111123346789999999999999999999999999988877777788887 9999999999999998
Q ss_pred HHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 149 AMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 149 ~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.+.++.++..|+++++....+++..+++.++++++|+++++
T Consensus 258 ~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~ 298 (558)
T PRK12583 258 VLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGV 298 (558)
T ss_pred HHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEecc
Confidence 88899999999999987567899999999999999998764
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-21 Score=163.60 Aligned_cols=167 Identities=19% Similarity=0.229 Sum_probs=120.2
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCCCCCCCCCcEEEEee---------cCcccHHHHHhcCCCcchhhhhhhh
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALR---------MGTFRLSDIMQGAGPEYHRRREQIS 85 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~---------~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (190)
++++|.++.+++.++++.+++++++++.+........... ++.+. .....+.+++....... ..
T Consensus 120 v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 192 (560)
T PLN02574 120 TTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPLGVP-VIGVPENYDFDSKRIEFPKFYELIKEDFDFV------PK 192 (560)
T ss_pred eCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhcCCc-EEecCcccccccCccCcccHHHHhhcCCccc------cc
Confidence 4458999999999999999999999987632211000111 11110 11233444443322111 12
Q ss_pred ccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhh----hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCE
Q psy13808 86 KSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGK----RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGST 161 (190)
Q Consensus 86 ~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~----~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~ 161 (190)
....++++++|+|||||||.||||+++|+++..+...... .+.....+++++..+|++|.+|+...++.++..|++
T Consensus 193 ~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~ 272 (560)
T PLN02574 193 PVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGST 272 (560)
T ss_pred CCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCE
Confidence 3346789999999999999999999999999877654432 222322278899999999999987777888899999
Q ss_pred EEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 162 TVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 162 vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+++. +.++++.+++.|++|++|++.++
T Consensus 273 ~v~~-~~~~~~~~~~~i~~~~~t~~~~~ 299 (560)
T PLN02574 273 IVVM-RRFDASDMVKVIDRFKVTHFPVV 299 (560)
T ss_pred EEEe-cCCCHHHHHHHHHHcCCeEEecC
Confidence 9998 68999999999999999998763
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-21 Score=164.85 Aligned_cols=171 Identities=17% Similarity=0.096 Sum_probs=115.3
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCCCCC-------------CCC--CCcEEEEe-ec------------------
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAYKAD-------------ALP--TKLTRLAL-RM------------------ 61 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~-------------~~~--~~~~~i~~-~~------------------ 61 (190)
++++.+++++|.++|++++|+++|++....... ... ....++.. ..
T Consensus 146 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 225 (647)
T PTZ00237 146 VLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKKIETIPTIP 225 (647)
T ss_pred eeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccccccccccccCCCc
Confidence 449999999999999999999999976311100 011 12233332 10
Q ss_pred CcccHHHHHhcCCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHH-HHHHHHHhhhhcCCcCCCcEEEEeC
Q psy13808 62 GTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYN-LINNSNFIGKRLEFDKTDHKILLQV 140 (190)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 140 (190)
+...|++++.......... .......+++|+++|+|||||||+||||+++|++ +.+............. ++++++..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~-~d~~~~~~ 303 (647)
T PTZ00237 226 NTLSWYDEIKKIKENNQSP-FYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDI-PTVVFSHS 303 (647)
T ss_pred ccccHHHHHhhhccccCCC-CCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCCC-CcEEEEcC
Confidence 1123444443211000000 0112345789999999999999999999999998 4443333334445555 89999999
Q ss_pred CchhHHHHHHHHHHHHHhCCEEEEcCCC-CC----hHHHHHHHHHCCceEEecc
Q psy13808 141 PMFHTFGTAMGILNAMNHGSTTVVPAPS-FK----PMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 141 pl~h~~g~~~~~~~~l~~G~~vv~~~~~-~~----~~~~~~~i~~~~iT~l~~t 189 (190)
|++|..+. ..++.+|..|+++++++.. +. ++.+++.|+++++|+++++
T Consensus 304 ~~~w~~~~-~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~ 356 (647)
T PTZ00237 304 SIGWVSFH-GFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTL 356 (647)
T ss_pred CCceEeeH-HHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeC
Confidence 99998764 4578999999999998532 22 7899999999999998764
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-21 Score=161.48 Aligned_cols=166 Identities=17% Similarity=0.176 Sum_probs=125.9
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCCCC-CC---CCCcEEEEee----------------------------cC
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYKAD-AL---PTKLTRLALR----------------------------MG 62 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~-~~---~~~~~~i~~~----------------------------~~ 62 (190)
++++|.++.+++.++++.+++++++++.+..... .. ...+.++... .+
T Consensus 89 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (546)
T PRK08314 89 VPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGG 168 (546)
T ss_pred eecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhccCcceEEEecchhhcccccccCcccccccccccccccccc
Confidence 4569999999999999999999999987632210 00 0122222210 01
Q ss_pred cccHHHHHhcCCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCc
Q psy13808 63 TFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPM 142 (190)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl 142 (190)
...|++.+..... .......++++++|+|||||||.||+|+++|++++..+......+++.. +|++++.+|+
T Consensus 169 ~~~~~~~~~~~~~-------~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~-~d~~l~~~p~ 240 (546)
T PRK08314 169 VVAWKEALAAGLA-------PPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTP-ESVVLAVLPL 240 (546)
T ss_pred cccHHHHhcccCC-------CCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCC-CceEEEEcCc
Confidence 1223333322110 0123356789999999999999999999999999988887777778877 9999999999
Q ss_pred hhHHHHHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 143 FHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 143 ~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+|.+|+.+.++.++..|+++++. +.+++..+++.++++++|++.++
T Consensus 241 ~~~~g~~~~~~~~l~~G~~i~~~-~~~~~~~~~~~i~~~~~t~~~~~ 286 (546)
T PRK08314 241 FHVTGMVHSMNAPIYAGATVVLM-PRWDREAAARLIERYRVTHWTNI 286 (546)
T ss_pred hHHHHHHHHHHHHHHcCCeEEec-CCCCHHHHHHHHHHhcCceeccc
Confidence 99999888888999999999999 67899999999999999998753
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-21 Score=174.67 Aligned_cols=173 Identities=12% Similarity=0.018 Sum_probs=127.7
Q ss_pred CCCcccccccCCCCC-----------------------CccchhhhhhccCCCCCCCCCCCCC---CCCCCCCcEEEEee
Q psy13808 7 NRGEKEDRIGESQPF-----------------------RERTLSHQDKIRPGRESNPRPSAYK---ADALPTKLTRLALR 60 (190)
Q Consensus 7 ~~~~~~~~v~i~p~~-----------------------~~~~l~~~l~~~~~~~i~~~~~~~~---~~~~~~~~~~i~~~ 60 (190)
.|-++||||+|--.. +.+++.+++++++++++|++.+.+. ....+.++.+|+++
T Consensus 477 lGV~~GDrVaIls~N~~Ewvia~lA~~~~GaV~VPly~t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~~~Lr~IIv~d 556 (1452)
T PTZ00297 477 LGVRPGDVIGVDCEASRNIVILEVACALYGFTTLPLVGKGSTMRTLIDEHKIKVVFADRNSVAAILTCRSRKLETVVYTH 556 (1452)
T ss_pred cCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeCCCCHHHHHHHHHhcCCcEEEEchhHHHHHHhhcccCCcEEEEEC
Confidence 467788888882222 5689999999999999999876322 11123577777762
Q ss_pred c----C-----------cccHHHHHhcCCCcchhhhhhhhccCCCCCeEEEEe---cCCCCCCCceeEechHHHHHHHHH
Q psy13808 61 M----G-----------TFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQF---TSGTTGHPKAAFLTHYNLINNSNF 122 (190)
Q Consensus 61 ~----~-----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---TSGTTG~PKgv~~sh~~~~~~~~~ 122 (190)
. + ..+|++++..+..... ......+++|++.|+| ||||||.||||++||+|++.++..
T Consensus 557 ~~~~~~~~~~~~~~~i~~~s~~~ll~~G~~~~~----~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~ 632 (1452)
T PTZ00297 557 SFYDEDDHAVARDLNITLIPYEFVEQKGRLCPV----PLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDIST 632 (1452)
T ss_pred CCcccccccccccCCcceeeHHHHHhcCcccCc----cccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHH
Confidence 1 0 2457777775532111 1123347889999996 999999999999999999998876
Q ss_pred hhhhc---CCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 123 IGKRL---EFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 123 ~~~~~---~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..... ...+ +|++++++|++|+++..+ .+.++..|++++. ++++.+++.|+++|+|++++.
T Consensus 633 ~~~~~~~~~~~~-~D~~Ls~LPLaHI~er~~-~~~~l~~G~~I~~----~d~~~lledL~~~rPTv~~~V 696 (1452)
T PTZ00297 633 LVMTGVLPSSFK-KHLMVHFTPFAMLFNRVF-VLGLFAHGSAVAT----VDAAHLQRAFVKFQPTILVAA 696 (1452)
T ss_pred HhhhccccCCCC-CCEEEEechHHHHHHHHH-HHHHHHcCCEEEe----CCHHHHHHHHHHHCCEEEEec
Confidence 55432 3344 899999999999999554 6777899999864 478999999999999999864
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.7e-21 Score=159.93 Aligned_cols=165 Identities=21% Similarity=0.281 Sum_probs=126.3
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCCC----------CCCCCCCcEEEEeec-----CcccHHHHHhcCCCcchhh
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAYK----------ADALPTKLTRLALRM-----GTFRLSDIMQGAGPEYHRR 80 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~----------~~~~~~~~~~i~~~~-----~~~~~~~l~~~~~~~~~~~ 80 (190)
+++|.++.+++.++++.+++++++++..... ...++..+.++.... ....+.+++.......
T Consensus 103 ~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 179 (547)
T PRK06087 103 PLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPATSSLSLSQIIADYEPLT--- 179 (547)
T ss_pred ccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcCCCcCccCHHHHhccCCccc---
Confidence 4588999999999999999999999764211 122334444444311 1223444443321111
Q ss_pred hhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCC
Q psy13808 81 REQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGS 160 (190)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~ 160 (190)
......++++++|+|||||||.||+|+++|+++..........+++.+ ++++++..|++|.+|+...++.++..|+
T Consensus 180 ---~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~-~d~~l~~~pl~h~~g~~~~~~~~l~~g~ 255 (547)
T PRK06087 180 ---TAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTW-QDVFMMPAPLGHATGFLHGVTAPFLIGA 255 (547)
T ss_pred ---CCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCC-CCeEEEecchHHHHHHHHHHHHHHhcCC
Confidence 112356789999999999999999999999999887777666777877 9999999999999998778889999999
Q ss_pred EEEEcCCCCChHHHHHHHHHCCceEEec
Q psy13808 161 TTVVPAPSFKPMDSLRAIAKEKCMEYLT 188 (190)
Q Consensus 161 ~vv~~~~~~~~~~~~~~i~~~~iT~l~~ 188 (190)
++++. +.++++.+++.++++++|++.+
T Consensus 256 ~~~~~-~~~~~~~~~~~i~~~~~t~~~~ 282 (547)
T PRK06087 256 RSVLL-DIFTPDACLALLEQQRCTCMLG 282 (547)
T ss_pred EEEec-CCCCHHHHHHHHHHcCCCEEec
Confidence 99998 7899999999999999998864
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-21 Score=167.48 Aligned_cols=168 Identities=16% Similarity=0.101 Sum_probs=119.0
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCC-----CCCCCCCcEEEEeecC---------------cccHHHHHhcCC
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYK-----ADALPTKLTRLALRMG---------------TFRLSDIMQGAG 74 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~~~~~~~~i~~~~~---------------~~~~~~l~~~~~ 74 (190)
|++++.++++++.++|++++++++|++.+.+. ...++.++.++.+++. ..+|.++...+.
T Consensus 159 vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (696)
T PLN02387 159 VTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGK 238 (696)
T ss_pred EEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccCCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhc
Confidence 34599999999999999999999999876322 2344566677665211 123455544322
Q ss_pred CcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhc-CCcCCCcEEEEeCCchhHHHHHHHHH
Q psy13808 75 PEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRL-EFDKTDHKILLQVPMFHTFGTAMGIL 153 (190)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~~~~~~~~~l~~~pl~h~~g~~~~~~ 153 (190)
.... ......++|+++|+|||||||.||||++||+++..........+ ++.+ +|++++.+|++|.+++... .
T Consensus 239 ~~~~-----~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~-~d~~l~~lPl~Hi~~~~~~-~ 311 (696)
T PLN02387 239 ENPV-----DPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGK-NDVYLAYLPLAHILELAAE-S 311 (696)
T ss_pred cCCC-----CCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCC-CCEEEEECcHHHHHHHHHH-H
Confidence 1110 01234689999999999999999999999999998776655443 5666 8999999999999997663 4
Q ss_pred HHHHhCCEEEEcCC-----CCC--hHHHHHHHHHCCceEEecc
Q psy13808 154 NAMNHGSTTVVPAP-----SFK--PMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 154 ~~l~~G~~vv~~~~-----~~~--~~~~~~~i~~~~iT~l~~t 189 (190)
..+..|+++.+... .++ +..+++.++++++|++.++
T Consensus 312 ~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~v 354 (696)
T PLN02387 312 VMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAV 354 (696)
T ss_pred HHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEeh
Confidence 45777888776421 111 2346778999999998763
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-20 Score=159.12 Aligned_cols=174 Identities=28% Similarity=0.475 Sum_probs=130.2
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCCC-----------------------CCCCCCcEEEEee----cCcccHH
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYKA-----------------------DALPTKLTRLALR----MGTFRLS 67 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~-----------------------~~~~~~~~~i~~~----~~~~~~~ 67 (190)
|+++|.++.+++.++++.+++++++++...... ...+..+.++... .+...++
T Consensus 96 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (559)
T PRK08315 96 VTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEKHPGMLNFD 175 (559)
T ss_pred EecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecccCCcccccHH
Confidence 456899999999999999999999998753211 1112233333321 1224455
Q ss_pred HHHhcCCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHH
Q psy13808 68 DIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFG 147 (190)
Q Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g 147 (190)
++....................++++++++|||||||.||+|.++|+++..+.......+++.+ +|+++...|++|..|
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~-~d~~~~~~p~~~~~g 254 (559)
T PRK08315 176 ELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTE-EDRLCIPVPLYHCFG 254 (559)
T ss_pred HHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCC-CceEEEecCcHHHHH
Confidence 5544321111111111123356788999999999999999999999999988888888888887 999999999999999
Q ss_pred HHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 148 TAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 148 ~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+.+.++.++..|+++++....+++..+++.++++++|+++++
T Consensus 255 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~ 296 (559)
T PRK08315 255 MVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGV 296 (559)
T ss_pred HHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecc
Confidence 888889999999999966578999999999999999998753
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=156.88 Aligned_cols=165 Identities=19% Similarity=0.225 Sum_probs=126.4
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCC-----CCCCCCCcEEEEeec---------CcccHHHHHhcCCCcchhh
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYK-----ADALPTKLTRLALRM---------GTFRLSDIMQGAGPEYHRR 80 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~~~~~~~~i~~~~---------~~~~~~~l~~~~~~~~~~~ 80 (190)
+++++.++.+++.++++++++++++++..... ....+....++.+.. ....|+++.......
T Consensus 78 v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 153 (515)
T TIGR03098 78 VPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHASEGGGESPSWPKLLALGDAD---- 153 (515)
T ss_pred EeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCcccccCCccccccHHHhhcccccc----
Confidence 35689999999999999999999999876332 112233334444311 123455544322111
Q ss_pred hhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCC
Q psy13808 81 REQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGS 160 (190)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~ 160 (190)
.......+++++++|||||||.||+|+++|+++..++......+++.. +|++++.+|++|.+++. .++.++..|+
T Consensus 154 ---~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~-~d~~l~~~p~~~~~~~~-~~~~~l~~G~ 228 (515)
T TIGR03098 154 ---PPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRP-DDRLLAVLPLSFDYGFN-QLTTAFYVGA 228 (515)
T ss_pred ---ccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCc-ccEEEEECchhhHhHHH-HHHHHHHcCC
Confidence 112345678999999999999999999999999988877777777776 89999999999999865 5789999999
Q ss_pred EEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 161 TTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 161 ~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
++++. +.++++.+++.++++++|++.++
T Consensus 229 ~~~~~-~~~~~~~~~~~i~~~~~t~~~~~ 256 (515)
T TIGR03098 229 TVVLH-DYLLPRDVLKALEKHGITGLAAV 256 (515)
T ss_pred EEEEc-CCCCHHHHHHHHHHcCCceEecC
Confidence 99998 67999999999999999998864
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-20 Score=161.42 Aligned_cols=168 Identities=11% Similarity=-0.002 Sum_probs=121.1
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCCCC--------------CCC-CCCcEEEEeec----------CcccHHHHH
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAYKA--------------DAL-PTKLTRLALRM----------GTFRLSDIM 70 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~--------------~~~-~~~~~~i~~~~----------~~~~~~~l~ 70 (190)
+++|.++++++.+++++++|+++|+++..... ... +....++++.. ....+.++.
T Consensus 138 ~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 217 (629)
T PRK10524 138 VVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPMARVAGRDVDYATLR 217 (629)
T ss_pred eeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCCcccHHHHH
Confidence 44899999999999999999999997652210 000 22334444321 112344443
Q ss_pred hcCCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHH-HHhhhhcCCcCCCcEEEEeCCchhHHHHH
Q psy13808 71 QGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNS-NFIGKRLEFDKTDHKILLQVPMFHTFGTA 149 (190)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~-~~~~~~~~~~~~~~~~l~~~pl~h~~g~~ 149 (190)
....... .......++++++|+|||||||.||||+++|.+++... ......+++.+ +|++++..|++|..+..
T Consensus 218 ~~~~~~~-----~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~ 291 (629)
T PRK10524 218 AQHLGAR-----VPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKA-GETFFCASDIGWVVGHS 291 (629)
T ss_pred hcCCCCC-----CCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCC-CCEEEEcCCCCeeccch
Confidence 3211110 01123467899999999999999999999999976543 33444567777 89999999999998877
Q ss_pred HHHHHHHHhCCEEEEcCC---CCChHHHHHHHHHCCceEEecc
Q psy13808 150 MGILNAMNHGSTTVVPAP---SFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 150 ~~~~~~l~~G~~vv~~~~---~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+.++.++..|+++++.+. .+++..+++.|+++++|++.++
T Consensus 292 ~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~ 334 (629)
T PRK10524 292 YIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSA 334 (629)
T ss_pred HHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeC
Confidence 778999999999999843 4589999999999999999864
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-20 Score=156.68 Aligned_cols=161 Identities=14% Similarity=0.187 Sum_probs=120.8
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCCCCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCCCeE
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDGI 94 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (190)
+++||.++++++.++++.++++.++++......... ....++... .+.+.+....... .......++++
T Consensus 78 v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~------~~~~~~~~~~a 146 (487)
T PRK07638 78 VPLDIKWKQDELKERLAISNADMIVTERYKLNDLPD-EEGRVIEID----EWKRMIEKYLPTY------APIENVQNAPF 146 (487)
T ss_pred EecCccCCHHHHHHHHHhCCCCEEEEecccccchhh-ccceEEEeh----hhhhhhhhccccc------cccccCCCCcE
Confidence 456899999999999999999999998763322111 111222211 1222222111110 01122356789
Q ss_pred EEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChHHH
Q psy13808 95 NIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDS 174 (190)
Q Consensus 95 ~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~ 174 (190)
+|+|||||||.||||+++|+++..++......+++.. +|+++...|++|..+ ++.++.++..|+++++. +.+++..+
T Consensus 147 ~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~-~d~~~~~~~l~~~~~-l~~~~~~l~~g~~~~~~-~~~~~~~~ 223 (487)
T PRK07638 147 YMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKR-EDSVLIAGTLVHSLF-LYGAISTLYVGQTVHLM-RKFIPNQV 223 (487)
T ss_pred EEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCC-CCEEEEeecchHHHH-HHHHHHHHccCcEEEEc-CCCCHHHH
Confidence 9999999999999999999999888777777778887 999999999999987 45688899999999998 78999999
Q ss_pred HHHHHHCCceEEecc
Q psy13808 175 LRAIAKEKCMEYLTK 189 (190)
Q Consensus 175 ~~~i~~~~iT~l~~t 189 (190)
++.++++++|++.++
T Consensus 224 ~~~i~~~~~t~~~~~ 238 (487)
T PRK07638 224 LDKLETENISVMYTV 238 (487)
T ss_pred HHHHHHcCCeEEEeC
Confidence 999999999999864
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-20 Score=158.50 Aligned_cols=165 Identities=21% Similarity=0.283 Sum_probs=123.3
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCCCC----CCCCCCcEEEEeec---CcccHHHHHhcCCCcchhhhhhhhccC
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAYKA----DALPTKLTRLALRM---GTFRLSDIMQGAGPEYHRRREQISKSL 88 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~----~~~~~~~~~i~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~ 88 (190)
++||.++.+++..++++.++++++++...... ...+.. .++.+.. +...+.++........ +....
T Consensus 104 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 176 (537)
T PLN02246 104 TANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAEDDGV-TVVTIDDPPEGCLHFSELTQADENEL------PEVEI 176 (537)
T ss_pred cCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhcCCc-eEEEeCCCCCCceeHHHHhcCCCCCC------CCCCC
Confidence 56899999999999999999999998763321 001111 2333311 2233444443221110 12335
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhh----hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGK----RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~----~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
.++++++++|||||||.||||+++|+++..+...... .+++.+ +|++++.+|++|.+++...++.++..|+++++
T Consensus 177 ~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~-~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~ 255 (537)
T PLN02246 177 SPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHS-DDVILCVLPMFHIYSLNSVLLCGLRVGAAILI 255 (537)
T ss_pred CccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCC-CcEEEEeechHHHHHHHHHHHHHHhcCCEEEE
Confidence 6889999999999999999999999999877654432 456776 99999999999999987778889999999999
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
. +.++++.+++.|+++++|++.++
T Consensus 256 ~-~~~~~~~~~~~i~~~~~t~~~~~ 279 (537)
T PLN02246 256 M-PKFEIGALLELIQRHKVTIAPFV 279 (537)
T ss_pred e-CCCCHHHHHHHHHHhCceEEEcc
Confidence 9 67999999999999999998764
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-20 Score=160.68 Aligned_cols=166 Identities=15% Similarity=0.095 Sum_probs=120.7
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCCC--------------CCCCCCCcEEEEeec-----------CcccHHHHH
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAYK--------------ADALPTKLTRLALRM-----------GTFRLSDIM 70 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~--------------~~~~~~~~~~i~~~~-----------~~~~~~~l~ 70 (190)
+++|.++++++.+++++++|+++++++.... ...++....++.+.. ....|++++
T Consensus 168 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 247 (655)
T PRK03584 168 SCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAAAAAALPGALLWEDFL 247 (655)
T ss_pred eeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCCcccccccCCcccHHHHh
Confidence 4589999999999999999999999875221 112344444444311 123455555
Q ss_pred hcCCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHH-HHHhhhhcCCcCCCcEEEEeCCchhHHHHH
Q psy13808 71 QGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINN-SNFIGKRLEFDKTDHKILLQVPMFHTFGTA 149 (190)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~-~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~ 149 (190)
....... .......++++++|+|||||||.||||+++|++++.+ .......+++.+ +|++++..++.|..+ .
T Consensus 248 ~~~~~~~-----~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~-~ 320 (655)
T PRK03584 248 APAEAAE-----LEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGP-GDRFFWYTTCGWMMW-N 320 (655)
T ss_pred hccccCC-----CCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCC-CCEEEEcCCchHHhH-H
Confidence 4211111 0123456799999999999999999999999987643 445556677877 899999999998765 2
Q ss_pred HHHHHHHHhCCEEEEcCC---CCChHHHHHHHHHCCceEEecc
Q psy13808 150 MGILNAMNHGSTTVVPAP---SFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 150 ~~~~~~l~~G~~vv~~~~---~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+ ++.+|..|+++++.++ .+++..+++.++++++|++.++
T Consensus 321 ~-~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~ 362 (655)
T PRK03584 321 W-LVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTS 362 (655)
T ss_pred H-HHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcC
Confidence 3 6789999999999843 3589999999999999998753
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=156.78 Aligned_cols=169 Identities=17% Similarity=0.165 Sum_probs=125.0
Q ss_pred cccCCCCCCccchhhhhhccCCCCCCCCCCCCCC------CCCCCCcEEEEee------cCcccHHHHHhcCCCcchhhh
Q psy13808 14 RIGESQPFRERTLSHQDKIRPGRESNPRPSAYKA------DALPTKLTRLALR------MGTFRLSDIMQGAGPEYHRRR 81 (190)
Q Consensus 14 ~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~------~~~~~~~~~i~~~------~~~~~~~~l~~~~~~~~~~~~ 81 (190)
-++++|.++.+++.++++++++++++++++.... ......+.++... .+...++++.........
T Consensus 89 ~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 165 (517)
T PRK08008 89 MVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPADDGVSSFTQLKAQQPATLC--- 165 (517)
T ss_pred EEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcccccccCHHHHhccCCcccc---
Confidence 4566999999999999999999999998873321 1112233444331 122334444332211100
Q ss_pred hhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCE
Q psy13808 82 EQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGST 161 (190)
Q Consensus 82 ~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~ 161 (190)
......++++++|+|||||||.||||+++|+++............+.. ++++++.+|++|..+....++.++..|++
T Consensus 166 --~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~l~~G~~ 242 (517)
T PRK08008 166 --YAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRD-DDVYLTVMPAFHIDCQCTAAMAAFSAGAT 242 (517)
T ss_pred --ccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCC-CCeEEEecCcHHHHHHHHHHHHHHhcCcE
Confidence 112346789999999999999999999999999866544444445666 89999999999998888888999999999
Q ss_pred EEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 162 TVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 162 vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+++. ++++++.+++.++++++|++.++
T Consensus 243 ~~~~-~~~~~~~~~~~i~~~~~t~~~~~ 269 (517)
T PRK08008 243 FVLL-EKYSARAFWGQVCKYRATITECI 269 (517)
T ss_pred EEEc-cccCHHHHHHHHHHcCCcEEech
Confidence 9998 68999999999999999998753
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=158.93 Aligned_cols=170 Identities=15% Similarity=0.147 Sum_probs=117.9
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCCCC-----CCCCC-----CcEEEEeec---------CcccHHHHHhcCCCc
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAYKA-----DALPT-----KLTRLALRM---------GTFRLSDIMQGAGPE 76 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~-----~~~~~-----~~~~i~~~~---------~~~~~~~l~~~~~~~ 76 (190)
++||.++.+++.++|+.+++++||++++.... ..++. ...++.++. ...++.+++......
T Consensus 93 pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (579)
T PLN03102 93 PINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSSEELDYECLIQRGEPT 172 (579)
T ss_pred eccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccccccCCcccccCHHHHHhccCCC
Confidence 56999999999999999999999998763210 01111 112222211 123344544332211
Q ss_pred chhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHH
Q psy13808 77 YHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAM 156 (190)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l 156 (190)
... .........++++++|+|||||||.||||+++|+++..........+.+.. .++.+..+|++|..++.. .+.++
T Consensus 173 ~~~-~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~-~~~~l~~~pl~h~~g~~~-~~~~~ 249 (579)
T PLN03102 173 PSL-VARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGT-CPVYLWTLPMFHCNGWTF-TWGTA 249 (579)
T ss_pred Ccc-cccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCC-CCeEEecCChhhhcchhH-HHHHH
Confidence 100 000011235689999999999999999999999997655444444445555 788999999999998654 56788
Q ss_pred HhCCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 157 NHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 157 ~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..|+++++. +.+++..+++.|+++++|+++++
T Consensus 250 ~~g~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~ 281 (579)
T PLN03102 250 ARGGTSVCM-RHVTAPEIYKNIEMHNVTHMCCV 281 (579)
T ss_pred HhcCcEEee-ccCChHHHHHHHHHcCCeEEEeC
Confidence 899999988 67899999999999999999864
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.9e-21 Score=171.62 Aligned_cols=174 Identities=18% Similarity=0.261 Sum_probs=126.9
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCCC-------CCCCCCcEEEEeec---Cc---ccHHHHHhcCCCcchhhh
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYKA-------DALPTKLTRLALRM---GT---FRLSDIMQGAGPEYHRRR 81 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~-------~~~~~~~~~i~~~~---~~---~~~~~l~~~~~~~~~~~~ 81 (190)
|++||.++++++.++++++++++++++++.... ...+....++...+ .. ..+.+.............
T Consensus 693 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (1146)
T PRK08633 693 VNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKISKVDKLTALLAARLLPARLLK 772 (1146)
T ss_pred EEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccchhHHHHHHHHhccCCHHHHH
Confidence 455999999999999999999999998752211 01222333333211 00 112222111100000000
Q ss_pred hhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCE
Q psy13808 82 EQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGST 161 (190)
Q Consensus 82 ~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~ 161 (190)
........++|+++++|||||||.||||+++|+++..+.......+++.+ +|++++.+|++|.+|+...++.++..|++
T Consensus 773 ~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~-~d~~l~~~p~~h~~g~~~~~~~~l~~g~~ 851 (1146)
T PRK08633 773 RLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRN-DDVILSSLPFFHSFGLTVTLWLPLLEGIK 851 (1146)
T ss_pred hhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCC-CCEEEEcCcHHHHHhHHHHHHHHHHCCCE
Confidence 00013456799999999999999999999999999988887777788887 99999999999999987778899999999
Q ss_pred EEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 162 TVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 162 vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+++.++.++++.+++.++++++|++.++
T Consensus 852 ~v~~~~~~~~~~~~~~i~~~~~t~~~~~ 879 (1146)
T PRK08633 852 VVYHPDPTDALGIAKLVAKHRATILLGT 879 (1146)
T ss_pred EEEeCCCCCHHHHHHHHHHcCCeEEEec
Confidence 9998667899999999999999999864
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-21 Score=186.56 Aligned_cols=163 Identities=18% Similarity=0.152 Sum_probs=126.5
Q ss_pred cccccCCCCCCccchhhhhhccCCCCCCCCCCCCCCCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCC
Q psy13808 12 EDRIGESQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCR 91 (190)
Q Consensus 12 ~~~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (190)
+..|+++|.++.+++.++++++++++++++...............+.++. ......... .+.....++
T Consensus 3170 a~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-----~~~~~~~~~ 3237 (3956)
T PRK12467 3170 GAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPAGDTALTLDR-------LDLNGYSEN-----NPSTRVMGE 3237 (3956)
T ss_pred cEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccccCCceeeecc-------hhhcccCCC-----CCcccCCCC
Confidence 34567799999999999999999999999877433211111112222111 000011100 112345789
Q ss_pred CeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCC--C
Q psy13808 92 DGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPS--F 169 (190)
Q Consensus 92 ~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~--~ 169 (190)
++++|+|||||||+||||+++|+++.+.+......+++.+ +|++++..|++|..+ ++.++.+|..|+++++.+ . +
T Consensus 3238 ~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~-~d~~l~~~~~~fd~~-~~~~~~~L~~G~~l~i~~-~~~~ 3314 (3956)
T PRK12467 3238 NLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDA-NDRVLLFMSFSFDGA-QERFLWTLICGGCLVVRD-NDLW 3314 (3956)
T ss_pred ceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCc-CCEEEEecCccHhHH-HHHHHHHHhCCCEEEECC-cccC
Confidence 9999999999999999999999999999988888889988 999999999999987 677899999999999985 4 7
Q ss_pred ChHHHHHHHHHCCceEEecc
Q psy13808 170 KPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 170 ~~~~~~~~i~~~~iT~l~~t 189 (190)
+++.+++.|+++++|++.++
T Consensus 3315 ~~~~l~~~i~~~~vt~~~~~ 3334 (3956)
T PRK12467 3315 DPEELWQAIHAHRISIACFP 3334 (3956)
T ss_pred CHHHHHHHHHHcCCEEEEcC
Confidence 99999999999999999865
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-20 Score=157.99 Aligned_cols=169 Identities=17% Similarity=0.201 Sum_probs=125.1
Q ss_pred ccccCCCCCCccchhhhhhccCCCCCCCCCCCCC-----CCCCCCCcEEEEeec--------------CcccHHHHHhcC
Q psy13808 13 DRIGESQPFRERTLSHQDKIRPGRESNPRPSAYK-----ADALPTKLTRLALRM--------------GTFRLSDIMQGA 73 (190)
Q Consensus 13 ~~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~~~~~~~~i~~~~--------------~~~~~~~l~~~~ 73 (190)
..+++||.++.+++.++++.+++++++++..... ....+..+.++.... ...+|.+++...
T Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (576)
T PRK05620 90 VFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGR 169 (576)
T ss_pred EEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHHhhcC
Confidence 3456799999999999999999999999876222 122334444443311 122355555432
Q ss_pred CCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHh--hhhcCCcCCCcEEEEeCCchhHHHHHHH
Q psy13808 74 GPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFI--GKRLEFDKTDHKILLQVPMFHTFGTAMG 151 (190)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~--~~~~~~~~~~~~~l~~~pl~h~~g~~~~ 151 (190)
.... ......++++++++|||||||.||||+++|+++....... ...+++.. ++++++.+|++|.+++..
T Consensus 170 ~~~~------~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~-~~~~l~~~pl~h~~g~~~- 241 (576)
T PRK05620 170 STVY------DWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTH-GESFLCCVPIYHVLSWGV- 241 (576)
T ss_pred CCcC------CCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCC-CCeEEEeCChHHhhhhHH-
Confidence 2111 1133567899999999999999999999999986544332 33466776 899999999999999654
Q ss_pred HHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 152 ILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 152 ~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.+.++..|+++++.+..+++..+++.++++++|.++++
T Consensus 242 ~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~ 279 (576)
T PRK05620 242 PLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGV 279 (576)
T ss_pred HHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeec
Confidence 67889999999998667899999999999999998764
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-20 Score=151.48 Aligned_cols=100 Identities=21% Similarity=0.329 Sum_probs=90.5
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCC
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAP 167 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~ 167 (190)
..++++++++|||||||.||||+++|+++.++.......+++.. +|+.+..+|++|.+|+...++.++..|+++++. +
T Consensus 98 ~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~-~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~-~ 175 (414)
T PRK08308 98 YLAEEPSLLQYSSGTTGEPKLIRRSWTEIDREIEAYNEALNCEQ-DETPIVACPVTHSYGLICGVLAALTRGSKPVII-T 175 (414)
T ss_pred CCCCCceEEEECCCCCCCCcEEEEehHhHHHHHHHHHHhhCCCc-ccEEEEecCcHHHHHHHHHHHHHHHcCCEEEec-C
Confidence 35688999999999999999999999999988777777777776 899999999999999888899999999999998 6
Q ss_pred CCChHHHHHHHHHCCceEEecc
Q psy13808 168 SFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 168 ~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.++++.+++.++++++|+++++
T Consensus 176 ~~~~~~~~~~l~~~~~t~~~~~ 197 (414)
T PRK08308 176 NKNPKFALNILRNTPQHILYAV 197 (414)
T ss_pred CCCHHHHHHHHHHhCCeEEEcC
Confidence 7899999999999999998763
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-20 Score=156.79 Aligned_cols=164 Identities=19% Similarity=0.193 Sum_probs=122.3
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCCC-----CCCCCCcEEEEeec--CcccHHHHHhcCCCcchhhhhhhhcc
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYKA-----DALPTKLTRLALRM--GTFRLSDIMQGAGPEYHRRREQISKS 87 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~-----~~~~~~~~~i~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 87 (190)
|++||.++.+++.++++.+++++++++...... ...+....++.... ....++++....... ...
T Consensus 121 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 192 (537)
T PRK13382 121 LLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDEDHDLTVEVLIAAHAGQ--------RPE 192 (537)
T ss_pred EecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCcccccHHHHhhccCcC--------CCC
Confidence 456999999999999999999999998762210 11222222232211 122344444322111 112
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCC
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAP 167 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~ 167 (190)
..+++.++++|||||||.||||+++|+++..........+.+.. +++++...|++|.+|+ ..++.++..|+++++. +
T Consensus 193 ~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~g~-~~~~~~l~~g~~~~~~-~ 269 (537)
T PRK13382 193 PTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRA-EEPTVIVAPMFHAWGF-SQLVLAASLACTIVTR-R 269 (537)
T ss_pred CCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCC-CCeEEEecChHhhhHH-HHHHHHHhcCcEEEEC-C
Confidence 34678899999999999999999999988877766666667776 8999999999999986 4578889999999988 7
Q ss_pred CCChHHHHHHHHHCCceEEecc
Q psy13808 168 SFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 168 ~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.++++.+++.|+++++|++.++
T Consensus 270 ~~~~~~~~~~i~~~~vt~~~~~ 291 (537)
T PRK13382 270 RFDPEATLDLIDRHRATGLAVV 291 (537)
T ss_pred CcCHHHHHHHHHHhCCEEEEeh
Confidence 8999999999999999998764
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-20 Score=154.11 Aligned_cols=167 Identities=22% Similarity=0.296 Sum_probs=131.0
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCC-----CCCCCCCcEEEEeec--------CcccHHHHHhcCCCcchhhh
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYK-----ADALPTKLTRLALRM--------GTFRLSDIMQGAGPEYHRRR 81 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~~~~~~~~i~~~~--------~~~~~~~l~~~~~~~~~~~~ 81 (190)
|+++|.++.+++.++++++++++++++..... ...++..+.++.... ...+|.+++.......
T Consensus 83 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 158 (513)
T PRK07656 83 VPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDPHTEKMKTFTDFLAAGDPAE---- 158 (513)
T ss_pred EecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCcccccCccccccHHHHHhcCCCCC----
Confidence 45689999999999999999999999876322 122344444444311 1234566654332211
Q ss_pred hhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCE
Q psy13808 82 EQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGST 161 (190)
Q Consensus 82 ~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~ 161 (190)
......++++++++|||||||.||+|.++|+++..........+++.. ++++++..|++|.+++...++.++..|++
T Consensus 159 --~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~G~~ 235 (513)
T PRK07656 159 --RAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTE-GDRYLAANPFFHVFGYKAGVNAPLMRGAT 235 (513)
T ss_pred --CcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCC-CCeEEEccchHHHHHHHHHHHHHHHcCce
Confidence 123457789999999999999999999999999988877777788887 99999999999999988778999999999
Q ss_pred EEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 162 TVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 162 vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+++. +.++++.+++.++++++|++.++
T Consensus 236 ~~~~-~~~~~~~~~~~i~~~~~t~~~~~ 262 (513)
T PRK07656 236 ILPL-PVFDPDEVFRLIETERITVLPGP 262 (513)
T ss_pred EEec-CcCCHHHHHHHHHHhCCeEEech
Confidence 9997 67899999999999999998764
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-20 Score=153.88 Aligned_cols=161 Identities=21% Similarity=0.220 Sum_probs=121.8
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCCC-CC---CCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCC
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYKA-DA---LPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNC 90 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~-~~---~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 90 (190)
+++++.++++++.++++.++++++++++..... .+ ......++.+ .++.++....... .....+
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--------~~~~~~ 148 (496)
T PRK06839 81 VPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVISI----TSLKEIEDRKIDN--------FVEKNE 148 (496)
T ss_pred EecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhccCcceEEEe----cchHhhhccCCCC--------CCCCCC
Confidence 455899999999999999999999998763221 11 1111222222 1233333322111 123466
Q ss_pred CCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCC
Q psy13808 91 RDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFK 170 (190)
Q Consensus 91 ~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~ 170 (190)
+++++|+|||||||.||+|+++|+++..........+++.+ +|++++.+|++|.+|+.+.++.++..|+++++. +.++
T Consensus 149 ~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~-~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~-~~~~ 226 (496)
T PRK06839 149 SASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTM-HDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVP-RKFE 226 (496)
T ss_pred CCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCC-CCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEc-cCCC
Confidence 89999999999999999999999998876665566677777 999999999999999877778899999999988 7899
Q ss_pred hHHHHHHHHHCCceEEecc
Q psy13808 171 PMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 171 ~~~~~~~i~~~~iT~l~~t 189 (190)
++.+++.++++++|++.++
T Consensus 227 ~~~~~~~i~~~~~t~~~~~ 245 (496)
T PRK06839 227 PTKALSMIEKHKVTVVMGV 245 (496)
T ss_pred HHHHHHHHHhhCCeEEEeh
Confidence 9999999999999998763
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-20 Score=158.24 Aligned_cols=170 Identities=17% Similarity=0.110 Sum_probs=116.6
Q ss_pred cCCCCCCc-----cchhhhhhccCCCCCCCCCCCC-----CCCCCCCCcEEEEeec-----CcccHHHHHhcCCCcchhh
Q psy13808 16 GESQPFRE-----RTLSHQDKIRPGRESNPRPSAY-----KADALPTKLTRLALRM-----GTFRLSDIMQGAGPEYHRR 80 (190)
Q Consensus 16 ~i~p~~~~-----~~l~~~l~~~~~~~i~~~~~~~-----~~~~~~~~~~~i~~~~-----~~~~~~~l~~~~~~~~~~~ 80 (190)
++||.++. +++.++++.+++++++++.... ........+ ++.... ....+.++........
T Consensus 134 pl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~--- 209 (624)
T PRK12582 134 PVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLLDVT-VVHVTGPGEGIASIAFADLAATPPTAA--- 209 (624)
T ss_pred eccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhhcCce-EEEEcCCCcccccccHHHHhhcCCcch---
Confidence 45888775 8999999999999999986411 100001122 222211 1234555554321110
Q ss_pred hhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcC--CCcEEEEeCCchhHHHHHHHHHHHHHh
Q psy13808 81 REQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDK--TDHKILLQVPMFHTFGTAMGILNAMNH 158 (190)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~--~~~~~l~~~pl~h~~g~~~~~~~~l~~ 158 (190)
.........++++++|+|||||||.||||+++|+++..+............ ..++.++.+|++|.+|+...++.++..
T Consensus 210 ~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~ 289 (624)
T PRK12582 210 VAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNANFNGLLWG 289 (624)
T ss_pred hhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEechHHHHHhHHHHHHHHHhC
Confidence 111112356789999999999999999999999999887665544444332 158999999999999987777888999
Q ss_pred CCEEEEcCCCCCh---HHHHHHHHHCCceEEecc
Q psy13808 159 GSTTVVPAPSFKP---MDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 159 G~~vv~~~~~~~~---~~~~~~i~~~~iT~l~~t 189 (190)
|+++++.+..+++ ..+++.++++++|+++++
T Consensus 290 G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~v 323 (624)
T PRK12582 290 GGTLYIDDGKPLPGMFEETIRNLREISPTVYGNV 323 (624)
T ss_pred ceEEEEcCCCcccchHHHHHHHHHhcCCeEEecc
Confidence 9999997545554 356778899999998764
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-20 Score=170.35 Aligned_cols=171 Identities=18% Similarity=0.164 Sum_probs=125.1
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCCC-------CCCCCCcEEEEeecC---cccHHHHHhcCCCcchhhhhhh
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYKA-------DALPTKLTRLALRMG---TFRLSDIMQGAGPEYHRRREQI 84 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~-------~~~~~~~~~i~~~~~---~~~~~~l~~~~~~~~~~~~~~~ 84 (190)
+++||.++++++.++++++++++++++++.... .+++....++..++. ...++++....... .+.. .
T Consensus 710 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~--~ 786 (1140)
T PRK06814 710 AMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQIGLADKIKGLLAGR-FPLV--Y 786 (1140)
T ss_pred EEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccCChHHHHHHHhhcc-CCcc--c
Confidence 346999999999999999999999998752221 112222333332110 01111111100000 0000 0
Q ss_pred hccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 85 SKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 85 ~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
.+..+++|+++++|||||||.||||+++|+++.++.......+++.+ +|++++.+|++|.+++...++.++..|+++++
T Consensus 787 ~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~-~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~ 865 (1140)
T PRK06814 787 FCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSP-EDKVFNALPVFHSFGLTGGLVLPLLSGVKVFL 865 (1140)
T ss_pred cCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCC-cCEEEEecchHHHHHHHHHHHHHHHcCCEEEE
Confidence 11357899999999999999999999999999988887778888887 99999999999999987788999999999999
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.++.++...+.+.++++++|++.++
T Consensus 866 ~~~~~~~~~~~~~i~~~~~t~~~~~ 890 (1140)
T PRK06814 866 YPSPLHYRIIPELIYDTNATILFGT 890 (1140)
T ss_pred ecCcccHHHHHHHHHhcCCEEEEec
Confidence 8556788889999999999998864
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-20 Score=182.66 Aligned_cols=166 Identities=18% Similarity=0.216 Sum_probs=127.1
Q ss_pred cccccCCCCCCccchhhhhhccCCCCCCCCCCCCCCCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCC
Q psy13808 12 EDRIGESQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCR 91 (190)
Q Consensus 12 ~~~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (190)
+..||++|.++.+++.++++++++++++++.........+.....+.+... .+........ .+.....++
T Consensus 587 ~~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~ 656 (3956)
T PRK12467 587 GAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLAQLPVPAGLRSLCLDEP----ADLLCGYSGH------NPEVALDPD 656 (3956)
T ss_pred cEEeccCCCChHHHHHHHHHhcCCCEEEechhhhhhcccccCccEEEeccc----cccccccCCC------CCCCCCCCC
Confidence 445677999999999999999999999999863322211111222221110 1111111110 012345789
Q ss_pred CeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCC--CC
Q psy13808 92 DGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAP--SF 169 (190)
Q Consensus 92 ~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~--~~ 169 (190)
++++|+|||||||+||||+++|+++.+.+......+++.+ +|+++...|++|..+ .+.++.+|..|+++++.++ .+
T Consensus 657 ~~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~-~d~~l~~~~~~fd~~-~~~~~~~L~~G~~lv~~~~~~~~ 734 (3956)
T PRK12467 657 NLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAA-DDSMLMVSTFAFDLG-VTELFGALASGATLHLLPPDCAR 734 (3956)
T ss_pred CeEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhcCCCC-CCEEEEecCccHhHH-HHHHHHHHhCCCEEEEcCccccC
Confidence 9999999999999999999999999999888888888887 999999999999988 5678999999999999854 37
Q ss_pred ChHHHHHHHHHCCceEEecc
Q psy13808 170 KPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 170 ~~~~~~~~i~~~~iT~l~~t 189 (190)
+++.+++.|+++++|++.++
T Consensus 735 ~~~~l~~~i~~~~vt~~~~~ 754 (3956)
T PRK12467 735 DAEAFAALMADQGVTVLKIV 754 (3956)
T ss_pred CHHHHHHHHHHcCCeEEEcC
Confidence 99999999999999999875
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-20 Score=156.21 Aligned_cols=167 Identities=19% Similarity=0.158 Sum_probs=122.5
Q ss_pred cccCCCCCCccchhhhhhccCCCCCCCCCCCCCC-----CCCCCCcEEEEeecCc-----ccHHHHHhcCCCcchhhhhh
Q psy13808 14 RIGESQPFRERTLSHQDKIRPGRESNPRPSAYKA-----DALPTKLTRLALRMGT-----FRLSDIMQGAGPEYHRRREQ 83 (190)
Q Consensus 14 ~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~-----~~~~~~~~~i~~~~~~-----~~~~~l~~~~~~~~~~~~~~ 83 (190)
-++++|.++.+++.++++++++++++++.+.... ........++.+.... ..+..... .... . ..
T Consensus 98 ~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~--~~ 172 (542)
T PRK06155 98 AVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVSVPAGWSTAPL--PPLD-A--PA 172 (542)
T ss_pred EEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCccccccccccchhhh--cccC-C--CC
Confidence 3456999999999999999999999998763221 1112233344332110 01110000 0000 0 00
Q ss_pred hhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEE
Q psy13808 84 ISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTV 163 (190)
Q Consensus 84 ~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv 163 (190)
......++++++|+|||||||.||||+++|+++..........+++.+ ++++++..|++|..++.. ++.++..|++++
T Consensus 173 ~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~-~~~~l~~~pl~~~~~~~~-~~~~l~~G~~~~ 250 (542)
T PRK06155 173 PAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGA-DDVLYTTLPLFHTNALNA-FFQALLAGATYV 250 (542)
T ss_pred CCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCC-CCEEEEecCHHHHHHHHH-HHHHHHcCceEE
Confidence 122346789999999999999999999999999887776777778887 999999999999998654 689999999999
Q ss_pred EcCCCCChHHHHHHHHHCCceEEec
Q psy13808 164 VPAPSFKPMDSLRAIAKEKCMEYLT 188 (190)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~iT~l~~ 188 (190)
+. +.++++.+++.|+++++|++++
T Consensus 251 ~~-~~~~~~~~~~~l~~~~~t~~~~ 274 (542)
T PRK06155 251 LE-PRFSASGFWPAVRRHGATVTYL 274 (542)
T ss_pred ee-CCCCHHHHHHHHHHhCCcEEEc
Confidence 98 6899999999999999999875
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.3e-20 Score=153.09 Aligned_cols=166 Identities=16% Similarity=0.110 Sum_probs=122.7
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCCC----------CCCCCCCcEEEEeecC--cccHHHHHhcCCCcchhhhhh
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAYK----------ADALPTKLTRLALRMG--TFRLSDIMQGAGPEYHRRREQ 83 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~----------~~~~~~~~~~i~~~~~--~~~~~~l~~~~~~~~~~~~~~ 83 (190)
+++|.++.+++.++++.+++++++++..... ....+..+.++..... .......+...... .
T Consensus 102 ~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 175 (527)
T TIGR02275 102 LALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRVEAELFLWLESPAEP------V 175 (527)
T ss_pred ccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCCcchhhHHhhCcCcc------c
Confidence 4478889999999999999999999865211 0112333333332110 11122222211111 0
Q ss_pred hhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHH-HHHHHHHhCCEE
Q psy13808 84 ISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAM-GILNAMNHGSTT 162 (190)
Q Consensus 84 ~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~-~~~~~l~~G~~v 162 (190)
......++++++++|||||||.||||+++|+++...+......+.+.+ +|++++.+|++|.+++.. .++.++..|+++
T Consensus 176 ~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~-~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~ 254 (527)
T TIGR02275 176 KFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQ-QTRYLCALPAAHNYPLSSPGALGVFYAGGCV 254 (527)
T ss_pred cCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCc-CCEEEECCChHhhhhhhHHHHHHHHhcCCeE
Confidence 113457789999999999999999999999999988877777778887 999999999999998654 478889999999
Q ss_pred EEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 163 VVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 163 v~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
++. +.+++..+++.++++++|++.++
T Consensus 255 v~~-~~~~~~~~~~~i~~~~~t~~~~~ 280 (527)
T TIGR02275 255 VLA-PDPSPTDCFPLIERHKVTVTALV 280 (527)
T ss_pred EEC-CCCCHHHHHHHHHHhCCeEEEec
Confidence 997 67899999999999999998764
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-20 Score=168.92 Aligned_cols=161 Identities=13% Similarity=0.124 Sum_probs=122.7
Q ss_pred ccccCCCCCCccchhhhhhccCCCCCCCCCCCCCCCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCCC
Q psy13808 13 DRIGESQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRD 92 (190)
Q Consensus 13 ~~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (190)
..|+++|.++.+++.++++++++++++++.+.... +.....+... .+........... .....+++
T Consensus 534 ~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~-------~~~~~~~~ 599 (1296)
T PRK10252 534 AWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPR--FADVPDLTSL-----CYNAPLAPQGAAP-------LQLSQPHH 599 (1296)
T ss_pred EEEecCccCHHHHHHHHHHhCCCCEEEECcchhhh--cccCCCceee-----ecccccccccCCC-------CCCCCCCC
Confidence 44667999999999999999999999998763321 1111111110 0111111000000 12236789
Q ss_pred eEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCC--CCC
Q psy13808 93 GINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAP--SFK 170 (190)
Q Consensus 93 ~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~--~~~ 170 (190)
+++|+|||||||.||||+++|+++.+.+.+....+++.+ +|++++..|++|..+ ++.++.+|..|+++++.++ ..+
T Consensus 600 ~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~-~d~~l~~~~~~fd~~-~~~~~~~l~~G~~l~~~~~~~~~~ 677 (1296)
T PRK10252 600 TAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTA-DDVVLQKTPCSFDVS-VWEFFWPFIAGAKLVMAEPEAHRD 677 (1296)
T ss_pred eEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCC-CCEEEEeCCcchhhh-HHHHHHHHhCCCEEEECChhccCC
Confidence 999999999999999999999999999988888899988 999999999999987 5678999999999999743 468
Q ss_pred hHHHHHHHHHCCceEEecc
Q psy13808 171 PMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 171 ~~~~~~~i~~~~iT~l~~t 189 (190)
++.+++.++++++|++.++
T Consensus 678 ~~~~~~~i~~~~vt~~~~~ 696 (1296)
T PRK10252 678 PLAMQQFFAEYGVTTTHFV 696 (1296)
T ss_pred HHHHHHHHHHcCCeEEEeC
Confidence 9999999999999998764
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4e-20 Score=152.84 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=120.8
Q ss_pred ccccCCCCCCccchhhhhhccCCCCCCCCCCCCCCCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCCC
Q psy13808 13 DRIGESQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRD 92 (190)
Q Consensus 13 ~~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (190)
..+++++.++.+++.+++++++++.++++........ ... ...++++........ .......+++
T Consensus 78 ~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~--~~~--------~~~~~~~~~~~~~~~-----~~~~~~~~~~ 142 (483)
T PRK03640 78 VAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLI--PGI--------SVKFAELMNGPKEEA-----EIQEEFDLDE 142 (483)
T ss_pred EEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHh--hhc--------cccHHHHhhcccccC-----CCCCCCCCCC
Confidence 3456688999999999999999999988765222110 000 011444333221111 0112346789
Q ss_pred eEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChH
Q psy13808 93 GINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPM 172 (190)
Q Consensus 93 ~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~ 172 (190)
+++++|||||||.||+|+++|+++..........+++.+ +|++++.+|++|.+++.. ++.++..|+++++. +.+++.
T Consensus 143 ~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~-~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~-~~~~~~ 219 (483)
T PRK03640 143 VATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTE-DDCWLAAVPIFHISGLSI-LMRSVIYGMRVVLV-EKFDAE 219 (483)
T ss_pred eEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCc-CcEEEEecCHHHHHHHHH-HHHHHhcCCEEEec-CCCCHH
Confidence 999999999999999999999998887766666678887 999999999999999655 78889999999998 679999
Q ss_pred HHHHHHHHCCceEEecc
Q psy13808 173 DSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 173 ~~~~~i~~~~iT~l~~t 189 (190)
.+++.++++++|++.++
T Consensus 220 ~~~~~i~~~~~t~l~~~ 236 (483)
T PRK03640 220 KINKLLQTGGVTIISVV 236 (483)
T ss_pred HHHHHHHHhCCcEEEeH
Confidence 99999999999998763
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.2e-20 Score=153.10 Aligned_cols=170 Identities=19% Similarity=0.256 Sum_probs=123.3
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCC-----------CCCCCCCcEEEEeecCcc--------cHHHHHhcCCC
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYK-----------ADALPTKLTRLALRMGTF--------RLSDIMQGAGP 75 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~-----------~~~~~~~~~~i~~~~~~~--------~~~~l~~~~~~ 75 (190)
++++|..+.+++.++++.+++++++++++... ....+..+.++....... .+..+......
T Consensus 88 v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (540)
T PRK06164 88 IAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPGARVQLFALPDP 167 (540)
T ss_pred EecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCCCCCccccccccccccc
Confidence 46699999999999999999999999876311 011223333333211000 00000000000
Q ss_pred cchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHH
Q psy13808 76 EYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155 (190)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~ 155 (190)
.. .. ........++++++++|||||||.||+|+++|+++..+.......+++.. ++++++.+|++|.+|+. .++.+
T Consensus 168 ~~-~~-~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~g~~-~~~~~ 243 (540)
T PRK06164 168 AP-PA-AAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDP-GAVLLAALPFCGVFGFS-TLLGA 243 (540)
T ss_pred CC-cc-cccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCC-CCEEEEcCCchhHHHHH-HHHHH
Confidence 00 00 00012235688999999999999999999999999998888888888887 99999999999999964 58999
Q ss_pred HHhCCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 156 MNHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 156 l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+..|+++++. +.+++..+++.|+++++|+++++
T Consensus 244 l~~G~~~~~~-~~~~~~~~~~~l~~~~~t~~~~~ 276 (540)
T PRK06164 244 LAGGAPLVCE-PVFDAARTARALRRHRVTHTFGN 276 (540)
T ss_pred HhcCceEEec-CCCCHHHHHHHHHHhCCeeecCC
Confidence 9999999998 68999999999999999998763
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-20 Score=183.92 Aligned_cols=166 Identities=17% Similarity=0.169 Sum_probs=126.9
Q ss_pred cccccCCCCCCccchhhhhhccCCCCCCCCCCCCCCCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCC
Q psy13808 12 EDRIGESQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCR 91 (190)
Q Consensus 12 ~~~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (190)
+..|+++|.++.+++.++++++++++++++..............++..+.. ...+...... .......++
T Consensus 586 ~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~ 655 (5163)
T PRK12316 586 GAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPLAAGVQVLDLDRP----AAWLEGYSEE------NPGTELNPE 655 (5163)
T ss_pred CEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCcccCceEEEecCc----chhhccCCCC------CCCCCCCCC
Confidence 345667999999999999999999999998763322211111122222110 1111111111 012345789
Q ss_pred CeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCC--CC
Q psy13808 92 DGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAP--SF 169 (190)
Q Consensus 92 ~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~--~~ 169 (190)
++++|+|||||||+||||+++|+++.+.+......+++.+ +|++++..|++|..+ ++.++.+|..|+++++.++ .+
T Consensus 656 ~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~-~d~~l~~~p~~fd~~-~~~~~~~L~~G~~l~i~~~~~~~ 733 (5163)
T PRK12316 656 NLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGV-GDTVLQKTPFSFDVS-VWEFFWPLMSGARLVVAAPGDHR 733 (5163)
T ss_pred CeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCC-CCEEEeeCCeehHHH-HHHHHHHHhCCCEEEECCccccC
Confidence 9999999999999999999999999999988888899987 999999999999998 5668999999999999853 47
Q ss_pred ChHHHHHHHHHCCceEEecc
Q psy13808 170 KPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 170 ~~~~~~~~i~~~~iT~l~~t 189 (190)
++..+++.|++++||++.++
T Consensus 734 ~~~~~~~~i~~~~vt~~~~~ 753 (5163)
T PRK12316 734 DPAKLVELINREGVDTLHFV 753 (5163)
T ss_pred CHHHHHHHHHHcCCeEEEeC
Confidence 99999999999999999875
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.5e-20 Score=153.75 Aligned_cols=164 Identities=16% Similarity=0.136 Sum_probs=120.9
Q ss_pred CCCCCccchhhhhhccCCCCCCCCCCCCC----------CCCCCCCcEEEEe-ecCcccHHHHHhcCCCcchhhhhhhhc
Q psy13808 18 SQPFRERTLSHQDKIRPGRESNPRPSAYK----------ADALPTKLTRLAL-RMGTFRLSDIMQGAGPEYHRRREQISK 86 (190)
Q Consensus 18 ~p~~~~~~l~~~l~~~~~~~i~~~~~~~~----------~~~~~~~~~~i~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (190)
++....+++.++++.++++.++++..... ....+..+.++.. ..+...+.+++....... ...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 177 (536)
T PRK10946 104 LFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDDGEHSLDDAINHPAEDF------TAT 177 (536)
T ss_pred CccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCCCCccHHHHhhCccccc------ccC
Confidence 33445677888999999999988764210 1112333333332 122334555544332111 112
Q ss_pred cCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHH-HHHHHHHhCCEEEEc
Q psy13808 87 SLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAM-GILNAMNHGSTTVVP 165 (190)
Q Consensus 87 ~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~-~~~~~l~~G~~vv~~ 165 (190)
...++++++++|||||||.||||+++|+++...+......+++.+ +|++++.+|++|.+++.. .++.++..|+++++.
T Consensus 178 ~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~-~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~ 256 (536)
T PRK10946 178 PSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTP-QTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLA 256 (536)
T ss_pred CCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCC-CceEEEecCccccccchhhhHHHHhhcCcEEEEC
Confidence 346789999999999999999999999999998887777888887 899999999999988653 578889999999998
Q ss_pred CCCCChHHHHHHHHHCCceEEecc
Q psy13808 166 APSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 166 ~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+.+++..+++.++++++|++.++
T Consensus 257 -~~~~~~~~~~~l~~~~~t~~~~~ 279 (536)
T PRK10946 257 -PDPSATLCFPLIEKHQVNVTALV 279 (536)
T ss_pred -CCCCHHHHHHHHHHhCCcEEEeC
Confidence 67899999999999999998764
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.3e-20 Score=153.99 Aligned_cols=168 Identities=22% Similarity=0.245 Sum_probs=127.9
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCC-----CCCCCCCcEEEEee----cCcccHHHHHhcCCCcchhhhhhhh
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYK-----ADALPTKLTRLALR----MGTFRLSDIMQGAGPEYHRRREQIS 85 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~~~~~~~~i~~~----~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (190)
|+++|..+.+++.++++.+++++++++..... ....+..+.++... .+..++++++........ .
T Consensus 95 vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 168 (542)
T PRK07786 95 VPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSDDSVLGYEDLLAEAGPAHA------P 168 (542)
T ss_pred EEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCCcccccCHHHHhhccCCCCC------C
Confidence 37799999999999999999999999876322 12224445455431 223556666543322110 1
Q ss_pred ccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEc
Q psy13808 86 KSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVP 165 (190)
Q Consensus 86 ~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~ 165 (190)
.....+++++++|||||||.||||+++|+++..........+++..+++++++..|++|.+|+ ..++.++..|+++++.
T Consensus 169 ~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~ 247 (542)
T PRK07786 169 VDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGI-GSMLPGLLLGAPTVIY 247 (542)
T ss_pred CCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHH-HHHHHHHHccCEEEEc
Confidence 234567899999999999999999999999988877666666663338999999999999986 5588999999999986
Q ss_pred C-CCCChHHHHHHHHHCCceEEecc
Q psy13808 166 A-PSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 166 ~-~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+ ..++++.+++.++++++|.++++
T Consensus 248 ~~~~~~~~~~~~~i~~~~~t~~~~~ 272 (542)
T PRK07786 248 PLGAFDPGQLLDVLEAEKVTGIFLV 272 (542)
T ss_pred cCCCcCHHHHHHHHHHcCCeEEEeh
Confidence 3 35799999999999999998764
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=99.84 E-value=9e-20 Score=151.81 Aligned_cols=169 Identities=15% Similarity=0.205 Sum_probs=127.8
Q ss_pred cccCCCCCCccchhhhhhccCCCCCCCCCCCCC-----CCCCCCCcEEEEee---cCcccHHHHHhcCCCcchhhhhhhh
Q psy13808 14 RIGESQPFRERTLSHQDKIRPGRESNPRPSAYK-----ADALPTKLTRLALR---MGTFRLSDIMQGAGPEYHRRREQIS 85 (190)
Q Consensus 14 ~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~~~~~~~~i~~~---~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (190)
.|+++|.++.+++.++++.+++++++++..... ....+....++... .....+.++........ ..
T Consensus 82 ~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 155 (508)
T TIGR02262 82 PVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLAELLATESEQF------KP 155 (508)
T ss_pred EeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCCCcccccHHHHhhcCCCcc------CC
Confidence 457799999999999999999999999876321 12334455554431 11223444433222111 11
Q ss_pred ccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHH-hhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 86 KSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNF-IGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 86 ~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~-~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
....++++++++|||||||.||||+++|+++...... ....+++.+ +|+++...|++|..++...++.++..|+++++
T Consensus 156 ~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~-~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~ 234 (508)
T TIGR02262 156 AATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIRE-DDVVFSAAKLFFAYGLGNALTFPMSVGATTVL 234 (508)
T ss_pred CCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCC-CCEEEEcCchHHHHHHHHHHHHHHHcCceEEE
Confidence 2345789999999999999999999999999876654 345567777 89999999999999977777888999999999
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.++.+++..+++.|+++++|+++++
T Consensus 235 ~~~~~~~~~~~~~i~~~~~t~~~~~ 259 (508)
T TIGR02262 235 MGERPTPDAVFDRLRRHQPTIFYGV 259 (508)
T ss_pred eCCCCCHHHHHHHHHHHCCcEEecc
Confidence 8767899999999999999998764
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5e-20 Score=182.73 Aligned_cols=164 Identities=13% Similarity=0.130 Sum_probs=124.7
Q ss_pred ccccCCCCCCccchhhhhhccCCCCCCCCCCCCCCCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCCC
Q psy13808 13 DRIGESQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRD 92 (190)
Q Consensus 13 ~~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (190)
..||++|.++.+++.++++++++++++++.........+.....+.+.. . ..+.. .... .+.....+++
T Consensus 2079 ~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~-~~~~------~~~~~~~~~~ 2147 (5163)
T PRK12316 2079 AYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLPAGVARLPLDR-D---AEWAD-YPDT------APAVQLAGEN 2147 (5163)
T ss_pred EEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccccccceEeccc-h---hhhhc-cCcc------CCCCCCCCCC
Confidence 3456699999999999999999999999887433211111111111111 0 11111 1100 0123457899
Q ss_pred eEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCC-CCCh
Q psy13808 93 GINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAP-SFKP 171 (190)
Q Consensus 93 ~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~-~~~~ 171 (190)
+++|+|||||||+||||+++|+++.+.+......+++.+ +|+++...|++|..+ ++.++.+|..|+++++.++ .+++
T Consensus 2148 ~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~-~d~~l~~~~~~fd~~-~~~~~~~L~~G~~~~~~~~~~~~~ 2225 (5163)
T PRK12316 2148 LAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSP-ADCELQFMSFSFDGA-HEQWFHPLLNGARVLIRDDELWDP 2225 (5163)
T ss_pred eEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhcCCCC-cceEEEecCchHHHH-HHHHHHHHhCCCEEEeCCcccCCH
Confidence 999999999999999999999999999988888889988 999999999999866 6779999999999988743 4799
Q ss_pred HHHHHHHHHCCceEEecc
Q psy13808 172 MDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 172 ~~~~~~i~~~~iT~l~~t 189 (190)
+.+++.|+++++|++.++
T Consensus 2226 ~~~~~~i~~~~vt~~~~~ 2243 (5163)
T PRK12316 2226 EQLYDEMERHGVTILDFP 2243 (5163)
T ss_pred HHHHHHHHHcCCeEEEcC
Confidence 999999999999999875
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=152.54 Aligned_cols=170 Identities=18% Similarity=0.153 Sum_probs=122.0
Q ss_pred cccCCCCCCccchhhhhhccCCCCCCCCCCCCCCCCCCCCcEEEEee----cCcccHHHHHhcCCCcchhhhhhhhccCC
Q psy13808 14 RIGESQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALR----MGTFRLSDIMQGAGPEYHRRREQISKSLN 89 (190)
Q Consensus 14 ~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 89 (190)
.|++||.++.+++.++++.+++++++++.........-... ++.+. .....|.+++........ ........
T Consensus 107 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 182 (546)
T PLN02330 107 FSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLGLP-VIVLGEEKIEGAVNWKELLEAADRAGD---TSDNEEIL 182 (546)
T ss_pred eccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcCCc-EEEecCCCCCCcccHHHHHhhccccCc---ccccccCC
Confidence 45779999999999999999999999998743321111112 22221 123446666543321110 00122345
Q ss_pred CCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcC--CcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCC
Q psy13808 90 CRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLE--FDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAP 167 (190)
Q Consensus 90 ~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~ 167 (190)
++++++++|||||||.||||+++|+++..+........+ ... .++.+..+|++|.+|+...++.++..|+++++. .
T Consensus 183 ~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~-~ 260 (546)
T PLN02330 183 QTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIG-QVVTLGLIPFFHIYGITGICCATLRNKGKVVVM-S 260 (546)
T ss_pred cccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccC-ceEEEEecChHHHHHHHHHHHHHhhcCCEEEEe-c
Confidence 789999999999999999999999999876543221111 122 568999999999999776678889999999998 6
Q ss_pred CCChHHHHHHHHHCCceEEecc
Q psy13808 168 SFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 168 ~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.+++..+++.++++++|++.++
T Consensus 261 ~~~~~~~~~~i~~~~vt~~~~~ 282 (546)
T PLN02330 261 RFELRTFLNALITQEVSFAPIV 282 (546)
T ss_pred ccCHHHHHHHHHHcCCeeeecC
Confidence 8999999999999999998753
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=152.43 Aligned_cols=168 Identities=17% Similarity=0.179 Sum_probs=121.2
Q ss_pred cccCCCCCCccchhhhhhccCCCCCCCCCCCCC-----CCCCCCCcEEEEee---------cCcccHHHHHhcCCCcchh
Q psy13808 14 RIGESQPFRERTLSHQDKIRPGRESNPRPSAYK-----ADALPTKLTRLALR---------MGTFRLSDIMQGAGPEYHR 79 (190)
Q Consensus 14 ~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~~~~~~~~i~~~---------~~~~~~~~l~~~~~~~~~~ 79 (190)
-|+++|.++++++.++++.+++++++++.+... ....+..+.++... .....++++........
T Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 168 (539)
T PRK07008 91 CHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCYETLVGAQDGDY-- 168 (539)
T ss_pred EeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCccccCCcccccHHHHhcccCCCc--
Confidence 345689999999999999999999999876321 11223333333321 11234455443322111
Q ss_pred hhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHH--HhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHH
Q psy13808 80 RREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSN--FIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMN 157 (190)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~--~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~ 157 (190)
.....+++++++++|||||||.||+|+++|+++..... .....+++.+ +|++++..|++|..++.. ++.++.
T Consensus 169 ----~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~-~d~~l~~~p~~h~~~~~~-~~~~l~ 242 (539)
T PRK07008 169 ----DWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSA-RDAVLPVVPMFHVNAWGL-PYSAPL 242 (539)
T ss_pred ----CcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCC-CceEEecCchHHhhhHHH-HHHHHh
Confidence 01234678899999999999999999999999875432 2234566776 899999999999887544 577889
Q ss_pred hCCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 158 HGSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 158 ~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.|+++++.++.++++.+++.++++++|++.++
T Consensus 243 ~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~ 274 (539)
T PRK07008 243 TGAKLVLPGPDLDGKSLYELIEAERVTFSAGV 274 (539)
T ss_pred cCceEEEecCCcCHHHHHHHHHHcCCEEEEec
Confidence 99999998667899999999999999998763
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7e-20 Score=158.06 Aligned_cols=165 Identities=16% Similarity=0.139 Sum_probs=113.4
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCCC-------CCCCCCCcEEEEeec----------CcccHHHHHhcCCCcch
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAYK-------ADALPTKLTRLALRM----------GTFRLSDIMQGAGPEYH 78 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~-------~~~~~~~~~~i~~~~----------~~~~~~~l~~~~~~~~~ 78 (190)
|+++.++++++.++++++++++++++..... ....+.. .++.+.. ...+|++++..+.....
T Consensus 175 pl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~~~-~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (700)
T PTZ00216 175 TVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNT-TIIYLDSLPASVDTEGCRLVAWTDVVAKGHSAGS 253 (700)
T ss_pred eeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhccCCce-EEEEECCCccccccCCceEEEHHHHHHhCCcccc
Confidence 4478899999999999999999999875221 1112222 3333311 12457776654321100
Q ss_pred hhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhc----C-CcCCCcEEEEeCCchhHHHHHHHHH
Q psy13808 79 RRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRL----E-FDKTDHKILLQVPMFHTFGTAMGIL 153 (190)
Q Consensus 79 ~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~----~-~~~~~~~~l~~~pl~h~~g~~~~~~ 153 (190)
. ........++|+++|+|||||||.||||+++|+|+.+.+......+ + +.+ +|++++.+|++|.++... ..
T Consensus 254 -~-~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~-~d~~ls~lPl~H~~~~~~-~~ 329 (700)
T PTZ00216 254 -H-HPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEE-DETYCSYLPLAHIMEFGV-TN 329 (700)
T ss_pred -c-cccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCC-CCEEEEEChHHHHHHHHH-HH
Confidence 0 0011334689999999999999999999999999998776654433 2 345 899999999999998654 44
Q ss_pred HHHHhCCEEEEcCCCCChHHHHH-------HHHHCCceEEecc
Q psy13808 154 NAMNHGSTTVVPAPSFKPMDSLR-------AIAKEKCMEYLTK 189 (190)
Q Consensus 154 ~~l~~G~~vv~~~~~~~~~~~~~-------~i~~~~iT~l~~t 189 (190)
..+..|+++++. ++..+++ .++++++|++.++
T Consensus 330 ~~l~~G~~v~~~----~~~~l~~~~~~~~~~l~~~~pT~~~~v 368 (700)
T PTZ00216 330 IFLARGALIGFG----SPRTLTDTFARPHGDLTEFRPVFLIGV 368 (700)
T ss_pred HHHHcCCEEEEC----CHHHhhhhhccccchHHHcCCcEEEec
Confidence 557778877663 4555555 6899999998764
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-19 Score=149.33 Aligned_cols=167 Identities=23% Similarity=0.299 Sum_probs=129.4
Q ss_pred cccCCCCCCccchhhhhhccCCCCCCCCCCCCC-----CCCCCCCcEEEEee--------cCcccHHHHHhcCCCcchhh
Q psy13808 14 RIGESQPFRERTLSHQDKIRPGRESNPRPSAYK-----ADALPTKLTRLALR--------MGTFRLSDIMQGAGPEYHRR 80 (190)
Q Consensus 14 ~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~~~~~~~~i~~~--------~~~~~~~~l~~~~~~~~~~~ 80 (190)
-+++++.++.+++..+++.+++++++++..... ...++..+.++... .....+.+++........
T Consensus 83 ~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 160 (521)
T PRK06187 83 LHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEYEELLAAASDTFD-- 160 (521)
T ss_pred EEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCccccccccccccHHHHhhcCCccCC--
Confidence 345588899999999999999999999987322 12334444555441 222445555554332211
Q ss_pred hhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCC
Q psy13808 81 REQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGS 160 (190)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~ 160 (190)
.....++++++++|||||||.||++.++|+++..........+++.+ +|++++..|++|.+++... +.++..|+
T Consensus 161 ----~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~-~~~l~~G~ 234 (521)
T PRK06187 161 ----FPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSR-DDVYLVIVPMFHVHAWGLP-YLALMAGA 234 (521)
T ss_pred ----CCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCC-CCEEEEeCCchHHhhHHHH-HHHHHhCC
Confidence 23456789999999999999999999999999988877777888887 9999999999999987664 44999999
Q ss_pred EEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 161 TTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 161 ~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
++++. +.+++..+++.++++++|.++++
T Consensus 235 ~~v~~-~~~~~~~~~~~l~~~~~t~l~~~ 262 (521)
T PRK06187 235 KQVIP-RRFDPENLLDLIETERVTFFFAV 262 (521)
T ss_pred EEEec-CCCCHHHHHHHHHHhCCeEEEch
Confidence 99998 56799999999999999998763
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-19 Score=151.96 Aligned_cols=170 Identities=15% Similarity=0.189 Sum_probs=117.8
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCCC----CCCCCCcEEEEeec-----------------------------
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYKA----DALPTKLTRLALRM----------------------------- 61 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~----~~~~~~~~~i~~~~----------------------------- 61 (190)
|++||.++.+++.++++++++++++++...... ......+.++....
T Consensus 103 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (562)
T PRK05677 103 VNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHLP 182 (562)
T ss_pred eecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhccCcceeEEecccccccchhhhhcccchhhccccccccCCc
Confidence 455899999999999999999999987652210 00011222222100
Q ss_pred CcccHHHHHhcCCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcC--CcCCCcEEEEe
Q psy13808 62 GTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLE--FDKTDHKILLQ 139 (190)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~~~~~~~l~~ 139 (190)
....+.+.+....... .......++++++++|||||||.||||+++|+++..........+. +....+++++.
T Consensus 183 ~~~~~~~~~~~~~~~~-----~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (562)
T PRK05677 183 QAVKFNDALAKGAGQP-----VTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAP 257 (562)
T ss_pred ccccHHHHHhcCCCCC-----CCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEEc
Confidence 0111222222111100 0112346789999999999999999999999999876655444332 33325789999
Q ss_pred CCchhHHHHHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 140 VPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 140 ~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+|++|.+++.+.++.++..|+++++.+..++++.+++.|+++++|+++++
T Consensus 258 ~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~ 307 (562)
T PRK05677 258 LPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGL 307 (562)
T ss_pred CcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecH
Confidence 99999999877788888899988887566899999999999999998753
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=151.16 Aligned_cols=172 Identities=17% Similarity=0.149 Sum_probs=120.2
Q ss_pred cccCCCCCCccchhhhhhccCCCCCCCCCCCCCCCCCC---CCcEEEEeecCc----ccHHHHHhcCCCcchhhhhhhhc
Q psy13808 14 RIGESQPFRERTLSHQDKIRPGRESNPRPSAYKADALP---TKLTRLALRMGT----FRLSDIMQGAGPEYHRRREQISK 86 (190)
Q Consensus 14 ~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~---~~~~~i~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~ 86 (190)
-++++|.++.+++.+++++++++.++++.........+ .....+...... ..+.......... .. .....
T Consensus 95 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~ 171 (534)
T PRK05852 95 VVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSVHLDAATEP-TP--ATSTP 171 (534)
T ss_pred EeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccccccceeeeecccccccccccccccccccCC-Cc--ccccc
Confidence 34559999999999999999999999876522211111 111111111000 0000000000000 00 00011
Q ss_pred cCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcC
Q psy13808 87 SLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPA 166 (190)
Q Consensus 87 ~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~ 166 (190)
...+++.++|+|||||||.||||+++|+++...+......+++.+ +|++++.+|++|..++...++.++..|+++++..
T Consensus 172 ~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~ 250 (534)
T PRK05852 172 EGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSP-RDATVAVMPLYHGHGLIAALLATLASGGAVLLPA 250 (534)
T ss_pred CCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCC-cceEEEecCcchhHHHHHHHHHHHhcCCeEEeCC
Confidence 123467899999999999999999999999988877777788887 9999999999999998888899999999999853
Q ss_pred -CCCChHHHHHHHHHCCceEEecc
Q psy13808 167 -PSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 167 -~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..+++..+++.|+++++|+++++
T Consensus 251 ~~~~~~~~~~~~i~~~~~t~~~~~ 274 (534)
T PRK05852 251 RGRFSAHTFWDDIKAVGATWYTAV 274 (534)
T ss_pred CcCcCHHHHHHHHHHcCCcEEEcC
Confidence 35899999999999999998764
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-19 Score=149.08 Aligned_cols=168 Identities=15% Similarity=0.089 Sum_probs=123.5
Q ss_pred cccccCCCCCCccchhhhhhccCCCCCCCCCCCCCCCCCCCCcEEEEeecC-cccHHHHHhcCCCcchhhhhhhhccCCC
Q psy13808 12 EDRIGESQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALRMG-TFRLSDIMQGAGPEYHRRREQISKSLNC 90 (190)
Q Consensus 12 ~~~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 90 (190)
..-+++++.++.+++.++++.+++++++++.......... ...+..... ...+..+....... .......+
T Consensus 77 ~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 148 (497)
T PRK06145 77 AVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVALE--TPKIVIDAAAQADSRRLAQGGLEI------PPQAAVAP 148 (497)
T ss_pred cEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhhcc--cceEEecCcccchhHHHhccCCCC------CCCCCCCc
Confidence 4556789999999999999999999999987633221111 122222111 11111111111000 01123577
Q ss_pred CCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCC
Q psy13808 91 RDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFK 170 (190)
Q Consensus 91 ~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~ 170 (190)
+++++++|||||||.||+|+++|+++..........+++.. +++++...|++|.+++.+..+.++..|+++++. +.++
T Consensus 149 ~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~-~~~~ 226 (497)
T PRK06145 149 TDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTA-SERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIH-REFD 226 (497)
T ss_pred cceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCC-CcEEEEecCchhHhHHHHHHHHHHhccCEEEEC-CcCC
Confidence 89999999999999999999999999876655556667776 899999999999999877677889999999998 6899
Q ss_pred hHHHHHHHHHCCceEEecc
Q psy13808 171 PMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 171 ~~~~~~~i~~~~iT~l~~t 189 (190)
+..+++.++++++|++.++
T Consensus 227 ~~~~~~~i~~~~~t~~~~~ 245 (497)
T PRK06145 227 PEAVLAAIERHRLTCAWMA 245 (497)
T ss_pred HHHHHHHHHHhCCeEEEeh
Confidence 9999999999999998753
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-19 Score=149.58 Aligned_cols=169 Identities=21% Similarity=0.166 Sum_probs=127.0
Q ss_pred cccccCCCCCCccchhhhhhccCCCCCCCCCCCCCC-----CCCCCCcEEEEe--------ecCcccHHHHHhcCCCcch
Q psy13808 12 EDRIGESQPFRERTLSHQDKIRPGRESNPRPSAYKA-----DALPTKLTRLAL--------RMGTFRLSDIMQGAGPEYH 78 (190)
Q Consensus 12 ~~~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~-----~~~~~~~~~i~~--------~~~~~~~~~l~~~~~~~~~ 78 (190)
..-++++|.++.+++.++++.+++++++++...... .... ...+... ......+.++........
T Consensus 86 ~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 163 (523)
T PRK08316 86 AVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLP-VDTLILSLVLGGREAPGGWLDFADWAEAGSVAE- 163 (523)
T ss_pred cEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcC-ccceeeeecccccccccchhhHHHHHhcCCCcc-
Confidence 344667999999999999999999999998763221 0111 1111111 112334444443322111
Q ss_pred hhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHh
Q psy13808 79 RRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNH 158 (190)
Q Consensus 79 ~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~ 158 (190)
......++++++++|||||||.||+|.++|+++..........+++.+ +++++..+|++|..++...++.++..
T Consensus 164 -----~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~-~~~~~~~~p~~h~~g~~~~~~~~~~~ 237 (523)
T PRK08316 164 -----PDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSA-DDIPLHALPLYHCAQLDVFLGPYLYV 237 (523)
T ss_pred -----CccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCC-CceEEEccCCchhhhHHHHHHHHHhc
Confidence 123457789999999999999999999999999988776677778887 99999999999999977767778899
Q ss_pred CCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 159 GSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 159 G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
|+++++. +.++++.+++.++++++|++.++
T Consensus 238 G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~ 267 (523)
T PRK08316 238 GATNVIL-DAPDPELILRTIEAERITSFFAP 267 (523)
T ss_pred CceEEEe-cCCCHHHHHHHHHHhCCeEEEeC
Confidence 9999998 67899999999999999998764
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-19 Score=149.27 Aligned_cols=154 Identities=17% Similarity=0.176 Sum_probs=121.2
Q ss_pred cccccCCCCCCccchhhhhhccCCCCCCCCCCCCCCCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCC
Q psy13808 12 EDRIGESQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCR 91 (190)
Q Consensus 12 ~~~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (190)
..-|+++|.++.+++.++++.++++.++++.+... ..++... .. .... .... .....++
T Consensus 70 ~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~~-~~~~~~~---~~-~~~~---------~~~~-------~~~~~~~ 128 (471)
T PRK07787 70 VPVVPVPPDSGVAERRHILADSGAQAWLGPAPDDP-AGLPHVP---VR-LHAR---------SWHR-------YPEPDPD 128 (471)
T ss_pred cEEeecCCCCChHHHHHHHHhcCCCEEEecCCccc-cccccee---ee-cccc---------cccc-------CCCCCCC
Confidence 34468899999999999999999999999864111 1111111 00 0000 0000 1124678
Q ss_pred CeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCCh
Q psy13808 92 DGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKP 171 (190)
Q Consensus 92 ~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~ 171 (190)
++++++|||||||.||||+++|+++..........+++.+ ++++++.+|++|.+|+...++.++..|+++++. +.+++
T Consensus 129 ~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~-~~~~~ 206 (471)
T PRK07787 129 APALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTA-DDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHT-GRPTP 206 (471)
T ss_pred ceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCc-cceeEeccCCeeechhHHHHHHHHhcCCEEEec-CCCCH
Confidence 9999999999999999999999999988877777788877 899999999999999888899999999999998 67999
Q ss_pred HHHHHHHHHCCceEEecc
Q psy13808 172 MDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 172 ~~~~~~i~~~~iT~l~~t 189 (190)
..+++.++ +++|++.++
T Consensus 207 ~~~~~~i~-~~~t~~~~~ 223 (471)
T PRK07787 207 EAYAQALS-EGGTLYFGV 223 (471)
T ss_pred HHHHHHHh-hCceEEEcc
Confidence 99999999 999998753
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-19 Score=151.38 Aligned_cols=173 Identities=22% Similarity=0.199 Sum_probs=121.2
Q ss_pred cccCCCCCCccchhhhhhccCCCCCCCCCCCCCCC-CC---CCCcEEEEe------------------------------
Q psy13808 14 RIGESQPFRERTLSHQDKIRPGRESNPRPSAYKAD-AL---PTKLTRLAL------------------------------ 59 (190)
Q Consensus 14 ~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~-~~---~~~~~~i~~------------------------------ 59 (190)
-|++||.++.+++.++++++++++++++....... ++ .....++..
T Consensus 109 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (573)
T PRK05605 109 VVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAALTG 188 (573)
T ss_pred EeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhccccceeEeeeccccccccccccccccccccccccccccc
Confidence 35568999999999999999999999877622100 00 011111111
Q ss_pred -ecCcccHHHHHhcCCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhc-CCcCCCcEEE
Q psy13808 60 -RMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRL-EFDKTDHKIL 137 (190)
Q Consensus 60 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~~~~~~~~~l 137 (190)
..+...|.+++........ .........++++++++|||||||.||+|+++|+++..........+ ++..++++++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~ 266 (573)
T PRK05605 189 PAPGTVPWETLVDAAIGGDG--SDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVL 266 (573)
T ss_pred CCCcceeHHHHhhccccccc--cccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcEEE
Confidence 0122334444433211100 00111235678999999999999999999999999987665443332 2333378999
Q ss_pred EeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 138 LQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 138 ~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+.+|++|.+|+.+.+..++..|+++++. +.++++.+++.++++++|++.++
T Consensus 267 ~~~p~~~~~g~~~~~~~~l~~g~~~~~~-~~~~~~~~~~~l~~~~~t~~~~~ 317 (573)
T PRK05605 267 AALPMFHAYGLTLCLTLAVSIGGELVLL-PAPDIDLILDAMKKHPPTWLPGV 317 (573)
T ss_pred EecChHHHHHHHHHHHHHHHcCCEEEEe-CCCCHHHHHHHHHHhCCEEEEch
Confidence 9999999999877778889999999998 67899999999999999999763
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.7e-20 Score=157.92 Aligned_cols=161 Identities=14% Similarity=0.118 Sum_probs=118.9
Q ss_pred cccCCCCCCccchhhhhhccCCCCCCCCCCCCCCCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCCCe
Q psy13808 14 RIGESQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDG 93 (190)
Q Consensus 14 ~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (190)
.|++||.++.+++.++++++++++++++...... +.... ++ ...+++........ .......++++
T Consensus 82 ~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~--~~~~~-~~-------~~~~~~~~~~~~~~----~~~~~~~~~~~ 147 (705)
T PRK06060 82 AFLANPELHRDDHALAARNTEPALVVTSDALRDR--FQPSR-VA-------EAAELMSEAARVAP----GGYEPMGGDAL 147 (705)
T ss_pred EEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhh--hcccc-cc-------hhhhhhhhccccCC----CCCCCCCCCCe
Confidence 4566999999999999999999999998652211 11100 00 11122111110000 00123467899
Q ss_pred EEEEecCCCCCCCceeEechHHHHHHHHHhh-hhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChH
Q psy13808 94 INIQFTSGTTGHPKAAFLTHYNLINNSNFIG-KRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPM 172 (190)
Q Consensus 94 ~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~-~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~ 172 (190)
++++|||||||.||||+++|+++.+...... ..+++.+ .|++++..|++|..++...++.++..|+++++.+..+++.
T Consensus 148 a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~-~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~ 226 (705)
T PRK06060 148 AYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTP-EDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSAPVTPE 226 (705)
T ss_pred EEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCC-cceeEEeccchhhcchhHHHHHHHhcCCEEEEeCCCCCHH
Confidence 9999999999999999999999988765543 4567777 8999999999999887677888999999999986678999
Q ss_pred HHHHHHHHCCceEEecc
Q psy13808 173 DSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 173 ~~~~~i~~~~iT~l~~t 189 (190)
.++..++++++|+++++
T Consensus 227 ~~~~~i~~~~~t~~~~~ 243 (705)
T PRK06060 227 AAAILSARFGPSVLYGV 243 (705)
T ss_pred HHHHHHHhcCCeEEeeH
Confidence 99999999999998753
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.6e-20 Score=179.35 Aligned_cols=165 Identities=13% Similarity=0.092 Sum_probs=125.8
Q ss_pred ccccccCCCCCCccchhhhhhccCCCCCCCCCCCCCC-----CCCCCC--cEEEEeecCcccHHHHHhcCCCcchhhhhh
Q psy13808 11 KEDRIGESQPFRERTLSHQDKIRPGRESNPRPSAYKA-----DALPTK--LTRLALRMGTFRLSDIMQGAGPEYHRRREQ 83 (190)
Q Consensus 11 ~~~~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~-----~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 83 (190)
.|..||++|.++.+++.++++++++++++++...... ..+... ..++. +++........ ..
T Consensus 3794 G~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-----~~ 3861 (4334)
T PRK05691 3794 GAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLV-------WEEVQAGEVAS-----HN 3861 (4334)
T ss_pred CcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceee-------ecccccccccc-----cC
Confidence 3456677999999999999999999999999863221 111111 11111 11111111000 01
Q ss_pred hhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEE
Q psy13808 84 ISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTV 163 (190)
Q Consensus 84 ~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv 163 (190)
......|++.+||+|||||||+||||+++|+++.+.+......+++++ +|+++...++.|..+ ++.++.++..|++++
T Consensus 3862 ~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~fd~s-~~~~~~~l~~G~~l~ 3939 (4334)
T PRK05691 3862 PGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSE-ADVIAQTASQSFDIS-VWQFLAAPLFGARVE 3939 (4334)
T ss_pred CCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCc-cceEEEecCCchhHH-HHHHHHHHhCCCEEE
Confidence 123457899999999999999999999999999999988888889988 999999999999987 677999999999999
Q ss_pred EcCC--CCChHHHHHHHHHCCceEEecc
Q psy13808 164 VPAP--SFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 164 ~~~~--~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+.++ ..++..+++.++++++|++.++
T Consensus 3940 i~~~~~~~~~~~l~~~~~~~~vt~~~~~ 3967 (4334)
T PRK05691 3940 IVPNAIAHDPQGLLAHVQAQGITVLESV 3967 (4334)
T ss_pred EcCccccCCHHHHHHHHHHcCCeEEEeC
Confidence 9853 3689999999999999998764
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.1e-19 Score=149.79 Aligned_cols=172 Identities=16% Similarity=0.116 Sum_probs=120.5
Q ss_pred ccccCCCCCCccchhhhhhccCCCCCCCCCCCCCC----CCCCCCcEEEEee-cC--------------------cccHH
Q psy13808 13 DRIGESQPFRERTLSHQDKIRPGRESNPRPSAYKA----DALPTKLTRLALR-MG--------------------TFRLS 67 (190)
Q Consensus 13 ~~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~----~~~~~~~~~i~~~-~~--------------------~~~~~ 67 (190)
..++++|.++.+++.+++++++++++++++..... ......+.++... .+ ...+.
T Consensus 109 ~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (567)
T PRK06178 109 VHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAI 188 (567)
T ss_pred EEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccCCcceEEEeccccccccccccccccccccccccccccc
Confidence 34567999999999999999999999998763221 0001122222210 00 00111
Q ss_pred HHHhcCCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhh-hcCCcCCCcEEEEeCCchhHH
Q psy13808 68 DIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGK-RLEFDKTDHKILLQVPMFHTF 146 (190)
Q Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~-~~~~~~~~~~~l~~~pl~h~~ 146 (190)
++........ .........++++++|+|||||||.||+|+++|+++......... ...+.+ +|+++..+|++|.+
T Consensus 189 ~~~~~~~~~~---~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~-~d~~l~~~p~~~~~ 264 (567)
T PRK06178 189 DLLPALRACT---APVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGE-DSVFLSFLPEFWIA 264 (567)
T ss_pred cHHHHhhccc---cccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCC-CcEEEEecchHHHH
Confidence 1111110000 000112356789999999999999999999999998876544332 345565 89999999999999
Q ss_pred HHHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 147 GTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 147 g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
|+...++.++..|+++++. ++++++.++..++++++|.+..+
T Consensus 265 g~~~~~~~~l~~G~~~~l~-~~~~~~~~~~~i~~~~~t~~~~~ 306 (567)
T PRK06178 265 GENFGLLFPLFSGATLVLL-ARWDAVAFMAAVERYRVTRTVML 306 (567)
T ss_pred HHHHHHHHHHHcCceEEEe-CCCCHHHHHHHHHHhCCeEEecc
Confidence 9877788899999999999 68999999999999999998653
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.5e-19 Score=147.94 Aligned_cols=165 Identities=22% Similarity=0.233 Sum_probs=122.8
Q ss_pred cccCCCCCCccchhhhhhccCCCCCCCCCCCCCC-C---CCCCCcEEEEee-cCcccHHHHHhcCCCcchhhhhhhhccC
Q psy13808 14 RIGESQPFRERTLSHQDKIRPGRESNPRPSAYKA-D---ALPTKLTRLALR-MGTFRLSDIMQGAGPEYHRRREQISKSL 88 (190)
Q Consensus 14 ~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~-~---~~~~~~~~i~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 88 (190)
.|+++|.++.+++.++++.+++++++++...... . .......++.+. .....+.+........ ......
T Consensus 80 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 153 (504)
T PRK07514 80 FLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVETLDADGTGSLLEAAAAAPDD------FETVPR 153 (504)
T ss_pred EEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhccCCceEEEecCCCcccHHHhhhhcCcc------cCcccC
Confidence 3567999999999999999999999998763321 0 111122233321 1122233322211111 112335
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCC
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPS 168 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~ 168 (190)
.++++++++|||||||.||+|+++|+++..........+++.+ +|++++..|++|..|+.+.++.++..|+++++. +.
T Consensus 154 ~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~-~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~-~~ 231 (504)
T PRK07514 154 GADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTP-DDVLIHALPIFHTHGLFVATNVALLAGASMIFL-PK 231 (504)
T ss_pred CCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCC-ccEEEEecchHHHHHHHHHHHHHHhcCcEEEEC-CC
Confidence 6789999999999999999999999999988877777778887 899999999999999887888999999999998 67
Q ss_pred CChHHHHHHHHHCCceEEec
Q psy13808 169 FKPMDSLRAIAKEKCMEYLT 188 (190)
Q Consensus 169 ~~~~~~~~~i~~~~iT~l~~ 188 (190)
++++.+++.++ ++|++.+
T Consensus 232 ~~~~~~~~~i~--~~t~~~~ 249 (504)
T PRK07514 232 FDPDAVLALMP--RATVMMG 249 (504)
T ss_pred CCHHHHHHHHH--hheeeec
Confidence 89999999994 6888765
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-19 Score=176.51 Aligned_cols=162 Identities=14% Similarity=0.140 Sum_probs=123.2
Q ss_pred cccCCCCCCccchhhhhhccCCCCCCCCCCCCCCCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCCCe
Q psy13808 14 RIGESQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDG 93 (190)
Q Consensus 14 ~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (190)
.|+++|.++.+++.++++++++++++++...... ++....+..+. .+++........ .+.....++++
T Consensus 1208 ~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~-----~~~~~~~~~~~ 1275 (4334)
T PRK05691 1208 YVPLDPDYPAERLAYMLADSGVELLLTQSHLLER--LPQAEGVSAIA-----LDSLHLDSWPSQ-----APGLHLHGDNL 1275 (4334)
T ss_pred EEecCcCChHHHHHHHHHhcCCCEEEecchhhhh--cccccCceEEe-----eccccccccCCC-----CCCCCCCCCCe
Confidence 4567999999999999999999999998763321 11111111110 000000000000 01123567999
Q ss_pred EEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCC--CCCh
Q psy13808 94 INIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAP--SFKP 171 (190)
Q Consensus 94 ~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~--~~~~ 171 (190)
++++|||||||+||||+++|+++.+.+......+++.+ +|++++..|++|..+ ++.++.+|..|+++++.++ .+++
T Consensus 1276 a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~-~d~~l~~~~~~fd~s-~~~~~~~L~~G~~l~i~~~~~~~~~ 1353 (4334)
T PRK05691 1276 AYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDD-SDVLMQKAPISFDVS-VWECFWPLITGCRLVLAGPGEHRDP 1353 (4334)
T ss_pred EEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcCCCC-CCEEEEeCCccHHHH-HHHHHHHHhCCCEEEEcCccccCCH
Confidence 99999999999999999999999998888888888887 999999999999887 5678999999999999853 4799
Q ss_pred HHHHHHHHHCCceEEecc
Q psy13808 172 MDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 172 ~~~~~~i~~~~iT~l~~t 189 (190)
+.+++.++++++|++.++
T Consensus 1354 ~~l~~~i~~~~vt~~~~~ 1371 (4334)
T PRK05691 1354 QRIAELVQQYGVTTLHFV 1371 (4334)
T ss_pred HHHHHHHHHcCCeEEECc
Confidence 999999999999999865
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.9e-19 Score=147.73 Aligned_cols=167 Identities=18% Similarity=0.218 Sum_probs=120.5
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCC-----CCCCCCCcEEEEeec----------CcccHHHHHhcCCCcchh
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYK-----ADALPTKLTRLALRM----------GTFRLSDIMQGAGPEYHR 79 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~~~~~~~~i~~~~----------~~~~~~~l~~~~~~~~~~ 79 (190)
+++||.++.+++.++++.++++.++++.+... ....+..+.++...+ +...+.+++.......
T Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 169 (542)
T PRK06018 92 HTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMPQTTLKNAVAYEEWIAEADGDF-- 169 (542)
T ss_pred eccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEecccccccccCccccccHHHHhccCCccc--
Confidence 46799999999999999999999999876221 122344444444311 1123444443322110
Q ss_pred hhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHH-HHH-HHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHH
Q psy13808 80 RREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLI-NNS-NFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMN 157 (190)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~-~~~-~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~ 157 (190)
......++++++|+|||||||.||||+++|++++ ... ......+++.. +|+++...|++|.+++.. .+.++.
T Consensus 170 ----~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~p~~h~~~~~~-~~~~~~ 243 (542)
T PRK06018 170 ----AWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSA-ADTMLPVVPLFHANSWGI-AFSAPS 243 (542)
T ss_pred ----CcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCC-CCEEEEecCHHHHhhhHH-HHhhhh
Confidence 0123466889999999999999999999999753 222 22344566776 899999999999988655 467789
Q ss_pred hCCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 158 HGSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 158 ~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.|+++++....++++.+++.++++++|++.++
T Consensus 244 ~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~ 275 (542)
T PRK06018 244 MGTKLVMPGAKLDGASVYELLDTEKVTFTAGV 275 (542)
T ss_pred cCceEEccCcCCCHHHHHHHHHhcCCceeecC
Confidence 99999987557899999999999999998763
|
|
| >KOG1175|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-19 Score=149.40 Aligned_cols=176 Identities=18% Similarity=0.181 Sum_probs=135.1
Q ss_pred cCCCcccccccC-------------------------CCCCCccchhhhhhccCCCCCCCCCCCCCCCC-----------
Q psy13808 6 RNRGEKEDRIGE-------------------------SQPFRERTLSHQDKIRPGRESNPRPSAYKADA----------- 49 (190)
Q Consensus 6 ~~~~~~~~~v~i-------------------------~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~----------- 49 (190)
..|-+|||||.+ ...+++.++...+++++||+|++........+
T Consensus 115 ~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a 194 (626)
T KOG1175|consen 115 KCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEA 194 (626)
T ss_pred hcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHH
Confidence 457888888876 67789999999999999999999987222110
Q ss_pred ---C-----CCCcEEEEe-ecCcccHHHHHhcCCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHH-H
Q psy13808 50 ---L-----PTKLTRLAL-RMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLIN-N 119 (190)
Q Consensus 50 ---~-----~~~~~~i~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~-~ 119 (190)
. +....+++. ...+..|+..+........ ....+.+|+.+|+|||||||.||++++++..... .
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~~~------~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~ 268 (626)
T KOG1175|consen 195 LLLVSDKSRPVWLDLIVSRRNRDLFWSLELKKASPEHP------CVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGA 268 (626)
T ss_pred hhcccccccccceeeEEecccccccHHHHhhhcCCCCC------ceecCccCceEEEecCCCCCCCCceeeccCcchHHH
Confidence 0 111111111 2233445555554443321 4678899999999999999999999999987554 4
Q ss_pred HHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCC-CCChHHHHHHHHHCCceEEec
Q psy13808 120 SNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAP-SFKPMDSLRAIAKEKCMEYLT 188 (190)
Q Consensus 120 ~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~-~~~~~~~~~~i~~~~iT~l~~ 188 (190)
+.....++.+++ .|++++...+.|+.|..+.++++|..|+++++.+. .+++..+++.+.+|++|++++
T Consensus 269 ~~~~~~~~d~q~-~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t 337 (626)
T KOG1175|consen 269 ALTSRYHFDLQP-SDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYT 337 (626)
T ss_pred hhhcceeccCCC-cceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEe
Confidence 455667778887 99999999999999988888999999999999864 359999999999999999986
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-19 Score=163.53 Aligned_cols=170 Identities=14% Similarity=0.107 Sum_probs=118.5
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCCC-CC--------C---CCCcEEEEeecCc-----cc--HHHHHhcCCC
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYKA-DA--------L---PTKLTRLALRMGT-----FR--LSDIMQGAGP 75 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~-~~--------~---~~~~~~i~~~~~~-----~~--~~~l~~~~~~ 75 (190)
|+++|.++++++.++++++++++++++...... .. . .....+....... .. ..+.+.....
T Consensus 323 vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1389)
T TIGR03443 323 SVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLVGGSLEGGETDVLAPYQA 402 (1389)
T ss_pred eccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEecccccccccccccccccccccccc
Confidence 356999999999999999999999987542110 00 0 0011111100000 00 0000000000
Q ss_pred cchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHH
Q psy13808 76 EYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155 (190)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~ 155 (190)
... ........++++++|+|||||||.||||+++|+++.+.+......+++.+ +|+++...|++|..+ ++.++.+
T Consensus 403 ~~~---~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~-~d~~~~~~~~~~d~~-~~~i~~~ 477 (1389)
T TIGR03443 403 LKD---TPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSE-NDKFTMLSGIAHDPI-QRDMFTP 477 (1389)
T ss_pred ccc---CCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCC-CCEEEEecCceecch-HHHHHHH
Confidence 000 00012346789999999999999999999999999998888888888887 999999999999876 5678999
Q ss_pred HHhCCEEEEcCCC--CChHHHHHHHHHCCceEEecc
Q psy13808 156 MNHGSTTVVPAPS--FKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 156 l~~G~~vv~~~~~--~~~~~~~~~i~~~~iT~l~~t 189 (190)
|..|+++++.++. .++..+++.|+++++|++.++
T Consensus 478 L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~ 513 (1389)
T TIGR03443 478 LFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLT 513 (1389)
T ss_pred HhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeC
Confidence 9999999998532 478899999999999998764
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.8e-19 Score=148.86 Aligned_cols=161 Identities=19% Similarity=0.201 Sum_probs=114.2
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCC-----CCCCCCCCCcEEEEeec----CcccHHHHHhcCCCcchhhhhhhh
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSA-----YKADALPTKLTRLALRM----GTFRLSDIMQGAGPEYHRRREQIS 85 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~-----~~~~~~~~~~~~i~~~~----~~~~~~~l~~~~~~~~~~~~~~~~ 85 (190)
|++||.++.+++.+++++++++++++++.. +.....+....++.... +...+.++........ ...
T Consensus 94 v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 168 (552)
T PRK09274 94 VLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWGKPSVRRLVTVGGRLLWGGTTLATLLRDGAAAP-----FPM 168 (552)
T ss_pred EEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccCccchhheeccccccccCCccHHHhcccCcccc-----CCC
Confidence 356999999999999999999999987531 11111122223332211 1123444432111111 012
Q ss_pred ccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEc
Q psy13808 86 KSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVP 165 (190)
Q Consensus 86 ~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~ 165 (190)
....++++++|+|||||||.||+|+++|+++...+......+++.+ +++.++..|++|.++ +..|+++++.
T Consensus 169 ~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~-~~~~~~~~pl~~~~~--------~~~g~~~~~~ 239 (552)
T PRK09274 169 ADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEP-GEIDLPTFPLFALFG--------PALGMTSVIP 239 (552)
T ss_pred CCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCC-CceeeeccCHHHhhh--------hhhCCeEEec
Confidence 3346789999999999999999999999999988877777788887 899999999987654 2358888876
Q ss_pred C------CCCChHHHHHHHHHCCceEEecc
Q psy13808 166 A------PSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 166 ~------~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+ ..++++.+++.|+++++|+++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~ 269 (552)
T PRK09274 240 DMDPTRPATVDPAKLFAAIERYGVTNLFGS 269 (552)
T ss_pred CcccccccccCHHHHHHHHHHcCCeEEecc
Confidence 3 14789999999999999999864
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.7e-19 Score=146.24 Aligned_cols=168 Identities=17% Similarity=0.171 Sum_probs=117.5
Q ss_pred cccCCCCCCccchhhhhhccCCCCCCCCCCCCCC-----CCCCCCcEEEEee--cCcccHHHHHhcCCCcchhhhhhhhc
Q psy13808 14 RIGESQPFRERTLSHQDKIRPGRESNPRPSAYKA-----DALPTKLTRLALR--MGTFRLSDIMQGAGPEYHRRREQISK 86 (190)
Q Consensus 14 ~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~-----~~~~~~~~~i~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (190)
-++++|.++.+++.++++.++++.++++.+.... ...+....++... ....++.+++........ ...
T Consensus 84 ~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 158 (528)
T PRK07470 84 WVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGARAGLDYEALVARHLGARV-----ANA 158 (528)
T ss_pred EEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCcccccHHHHHhcCCCCCC-----Ccc
Confidence 3456899999999999999999999998763211 1122333344331 112356665543321111 123
Q ss_pred cCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhh-hhc-CCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 87 SLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIG-KRL-EFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 87 ~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~-~~~-~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
...++++++|+|||||||.||+|+++|+++........ ..+ +... .|+++..+|++|..++.. ++ .+..|++.++
T Consensus 159 ~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~-~d~~l~~~p~~~~~~~~~-~~-~~~~g~~~~~ 235 (528)
T PRK07470 159 AVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTE-QDASLVVAPLSHGAGIHQ-LC-QVARGAATVL 235 (528)
T ss_pred cCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCc-ccEEEEeccchhHHHHHH-HH-HHhcCceEEE
Confidence 45678999999999999999999999999876543322 222 4555 899999999999998643 44 5677777766
Q ss_pred cC-CCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PA-PSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~-~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.+ ..++++.+++.|+++++|++.++
T Consensus 236 ~~~~~~~~~~~~~~i~~~~~t~~~~~ 261 (528)
T PRK07470 236 LPSERFDPAEVWALVERHRVTNLFTV 261 (528)
T ss_pred ecccCcCHHHHHHHHHhcCCeEEech
Confidence 53 46899999999999999998764
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-18 Score=139.71 Aligned_cols=164 Identities=17% Similarity=0.129 Sum_probs=120.8
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCCCCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCCCeE
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDGI 94 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (190)
+++++.++.+++.++++.+++++++++............. .+.... .+............. .....+++++
T Consensus 53 v~~~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~~ 123 (408)
T TIGR01733 53 VPLDPAYPAERLAFILEDAGARLLLTDSALASRLAGLVLP-IILVDP---LELAALDDAPAPPPP-----DAPSGPDDLA 123 (408)
T ss_pred EEcCCCCCHHHHHHHHHhcCCCEEEEcCchhhhccccCCc-eEEech---hhhhhcccccccccc-----cCCCCCCCcE
Confidence 4568999999999999999999999998744322211112 222111 111111111111000 1114578999
Q ss_pred EEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCC--hH
Q psy13808 95 NIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFK--PM 172 (190)
Q Consensus 95 ~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~--~~ 172 (190)
+++|||||||.||+|+++|+++..........+++.+ +|++++..|++|.+++ +.++.++..|+++++.++... ++
T Consensus 124 ~i~~TSGTtG~pK~v~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~-~~~~~~l~~g~~~~~~~~~~~~~~~ 201 (408)
T TIGR01733 124 YVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDP-DDRVLQFASLSFDASV-EEIFGTLLAGATLVVPPEDEERDAA 201 (408)
T ss_pred EEEEcCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCC-CceEEEecCCccchhH-HHHHHHHhCCCEEEEcChhhccCHH
Confidence 9999999999999999999999998888777888887 9999999999999985 558999999999999854333 78
Q ss_pred HHHHHHHHCCceEEecc
Q psy13808 173 DSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 173 ~~~~~i~~~~iT~l~~t 189 (190)
.+.+.++++++|.+.++
T Consensus 202 ~~~~~~~~~~~t~l~~~ 218 (408)
T TIGR01733 202 LLAALIAEHPVTVLNLT 218 (408)
T ss_pred HHHHHHHHcCceEEEeC
Confidence 99999999999998864
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-18 Score=146.50 Aligned_cols=166 Identities=15% Similarity=0.155 Sum_probs=114.2
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCCCC-----C---C--CC--CCcEEEEee--------------cCcccHHHH
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAYKA-----D---A--LP--TKLTRLALR--------------MGTFRLSDI 69 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~-----~---~--~~--~~~~~i~~~--------------~~~~~~~~l 69 (190)
++||.++.+++.++++.++++++++++..... . . .. ....+++.. .+...+.++
T Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
T PLN02479 99 CVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEYEKF 178 (567)
T ss_pred EeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccCcccHHHH
Confidence 55999999999999999999999998763211 0 0 00 011122221 122235555
Q ss_pred HhcCCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHH
Q psy13808 70 MQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTA 149 (190)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~ 149 (190)
+....+... . ....+.+++++++|||||||.||||+++|+++..........+++.. +++++..+|++|.+++.
T Consensus 179 ~~~~~~~~~----~-~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~h~~~~~ 252 (567)
T PLN02479 179 LETGDPEFA----W-KPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNE-GAVYLWTLPMFHCNGWC 252 (567)
T ss_pred Hhccccccc----c-CCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCC-CCEEEEecchhhhhhHH
Confidence 443221100 0 01223456788999999999999999999998776655555667776 89999999999999866
Q ss_pred HHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 150 MGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 150 ~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..+...+..|.++++ ..++++.+++.++++++|++.++
T Consensus 253 ~~~~~~~~~g~~~~~--~~~~~~~~~~~l~~~~~t~~~~~ 290 (567)
T PLN02479 253 FTWTLAALCGTNICL--RQVTAKAIYSAIANYGVTHFCAA 290 (567)
T ss_pred HHHHHHhhcCceEec--cCCCHHHHHHHHHHcCCeEEEec
Confidence 544445666665554 46899999999999999998763
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-19 Score=152.19 Aligned_cols=157 Identities=19% Similarity=0.256 Sum_probs=106.7
Q ss_pred CCCCC--ccchhhhhhccCCCCCCCCCCCCCC-----CCCCC--CcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccC
Q psy13808 18 SQPFR--ERTLSHQDKIRPGRESNPRPSAYKA-----DALPT--KLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSL 88 (190)
Q Consensus 18 ~p~~~--~~~l~~~l~~~~~~~i~~~~~~~~~-----~~~~~--~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 88 (190)
+|.++ ++++.++++++++++++++...... ..++. ...++... ++....... ......
T Consensus 124 ~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------~~~~~~~~~------~~~~~~ 190 (612)
T PRK12476 124 APELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAID-------AIPDSAGES------FVPVEL 190 (612)
T ss_pred CCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEec-------ccccccccc------ccCCCC
Confidence 46665 7899999999999999998652210 11121 12233221 110000000 001234
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcC-CcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCC
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLE-FDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAP 167 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~ 167 (190)
.++++++|+|||||||+||||+++|+++.++.......++ +.+ +++.++.+|++|..|+... +.+++.|+++++..+
T Consensus 191 ~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~-~~~~l~~~Pl~h~~g~~~~-~~~~~~gg~~~~~~~ 268 (612)
T PRK12476 191 DTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDR-NTHGVSWLPLYHDMGLSMI-GFPAVYGGHSTLMSP 268 (612)
T ss_pred CCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCC-CceEEEeCCcccccchHHH-HHHHhcCCeEEEECH
Confidence 6789999999999999999999999999877666656666 666 8999999999999997654 444455666665533
Q ss_pred -CC--ChHHHHHHHH--HCCceEEecc
Q psy13808 168 -SF--KPMDSLRAIA--KEKCMEYLTK 189 (190)
Q Consensus 168 -~~--~~~~~~~~i~--~~~iT~l~~t 189 (190)
.+ ++..+++.++ ++++|.+.++
T Consensus 269 ~~~~~~p~~~~~~i~~~~~~~t~~~~~ 295 (612)
T PRK12476 269 TAFVRRPQRWIKALSEGSRTGRVVTAA 295 (612)
T ss_pred HHHHHHHHHHHHHHhhhccCCeEEEeC
Confidence 23 8999999995 4888887653
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-18 Score=143.83 Aligned_cols=167 Identities=18% Similarity=0.168 Sum_probs=118.3
Q ss_pred cccCCCCCCccchhhhhhccCCCCCCCCCCCCC-----CCCCCCCcEEEEeec--------CcccHHHHHhcCCCcchhh
Q psy13808 14 RIGESQPFRERTLSHQDKIRPGRESNPRPSAYK-----ADALPTKLTRLALRM--------GTFRLSDIMQGAGPEYHRR 80 (190)
Q Consensus 14 ~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~~~~~~~~i~~~~--------~~~~~~~l~~~~~~~~~~~ 80 (190)
.++++|.++.+++.++++.+++++++++..... ....+..+.++.+.. +..++++++.......
T Consensus 80 ~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 156 (533)
T PRK07798 80 PVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVDYEDALAAGSPER--- 156 (533)
T ss_pred EEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCcccccCCccccHHHHHhccCCcC---
Confidence 345688999999999999999999999876221 122344444544421 1235666554432211
Q ss_pred hhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---------cCC------cCCCcEEEEeCCchhH
Q psy13808 81 REQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---------LEF------DKTDHKILLQVPMFHT 145 (190)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---------~~~------~~~~~~~l~~~pl~h~ 145 (190)
.......+.++|+|||||||.||+|+++|+++.......... ..+ .. +++++...|++|.
T Consensus 157 ----~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~pl~~~ 231 (533)
T PRK07798 157 ----DFGERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGP-GMRRFPAPPLMHG 231 (533)
T ss_pred ----CCCCCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCC-CceEEEecchhhh
Confidence 011122345789999999999999999999987654332111 111 34 7899999999999
Q ss_pred HHHHHHHHHHHHhCCEEEEcC-CCCChHHHHHHHHHCCceEEecc
Q psy13808 146 FGTAMGILNAMNHGSTTVVPA-PSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 146 ~g~~~~~~~~l~~G~~vv~~~-~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.++. .++.++..|+++++.+ ..+++..+++.++++++|++..+
T Consensus 232 ~~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~ 275 (533)
T PRK07798 232 AGQW-AAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIV 275 (533)
T ss_pred hhHH-HHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEec
Confidence 9965 6889999999999994 17899999999999999998753
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.9e-19 Score=145.33 Aligned_cols=143 Identities=9% Similarity=0.022 Sum_probs=102.9
Q ss_pred ccccCCCCCCccchhhhhhccCCCCCCCCCCCCCCCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCCC
Q psy13808 13 DRIGESQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRD 92 (190)
Q Consensus 13 ~~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (190)
..|++||.++.+|++++++++++++++++.+..... . . ... .. .....+++
T Consensus 71 ~~vpl~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------~-~----------~~~-~~-------~~~~~~~~ 121 (452)
T PRK07445 71 PVFLANPHWGQQEWQQVLNLVQPDQIWGLDQLKLSH----------P-P----------PLP-SQ-------GILPNLET 121 (452)
T ss_pred EEEeeccCCCHHHHHHHHHhcCCCEEEecCcccccc----------C-C----------CCC-cc-------ccCCCCCC
Confidence 345669999999999999999999998865421100 0 0 000 00 11235689
Q ss_pred eEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChH
Q psy13808 93 GINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPM 172 (190)
Q Consensus 93 ~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~ 172 (190)
+++++|||||||.||||++||+++..........+++. .++.++.+|++|.+|+. .++.++..|+++++.+ .....
T Consensus 122 ~~~i~~TSGTTG~PKgV~~t~~~l~~~~~~~~~~~~~~--~~~~~~~~Pl~h~~g~~-~~~~~l~~G~t~v~~~-~~~~~ 197 (452)
T PRK07445 122 GWIMIPTGGSSGQIRFAIHTWETLTASVQGFQRYFQLQ--QVNSFCVLPLYHVSGLM-QFMRSFLTGGKLVILP-YKRLK 197 (452)
T ss_pred cEEEEeCCCCCCCCcEEEechHHHHHHHHHHHHHhcCC--CCceEeccCchhhhhHH-HHHHHHHcCCeEEEcC-hHhcc
Confidence 99999999999999999999999988777666666664 34678899999999964 4788999999999983 33223
Q ss_pred HHHHHHHHCCceEEec
Q psy13808 173 DSLRAIAKEKCMEYLT 188 (190)
Q Consensus 173 ~~~~~i~~~~iT~l~~ 188 (190)
.......++++|++..
T Consensus 198 ~~~~~~~~~~~t~~~~ 213 (452)
T PRK07445 198 SGQELPPNPSDFFLSL 213 (452)
T ss_pred chhhhhhhcCceEEEe
Confidence 3334445788877654
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-18 Score=143.18 Aligned_cols=156 Identities=20% Similarity=0.232 Sum_probs=116.7
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCCCCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCCCeE
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDGI 94 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (190)
++++|.++++++.++++++++++++++....... . . ...++++.......... ......+++++
T Consensus 75 v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~----~-~-------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 138 (488)
T PRK09088 75 VPLNWRLSASELDALLQDAEPRLLLGDDAVAAGR----T-D-------VEDLAAFIASADALEPA----DTPSIPPERVS 138 (488)
T ss_pred EeeCccCCHHHHHHHHHhCCCCEEEEcchhhccc----c-c-------ccchhhhhhhccccccc----cCCCCCCCCce
Confidence 4568999999999999999999999886532210 0 0 01122222211110000 01234568899
Q ss_pred EEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChHHH
Q psy13808 95 NIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDS 174 (190)
Q Consensus 95 ~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~ 174 (190)
+++|||||||.||+|+++|+++............... +|++++.+|++|.+|+...+..++..|+++++. +.+++..+
T Consensus 139 ~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~-~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~-~~~~~~~~ 216 (488)
T PRK09088 139 LILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDA-HSSFLCDAPMFHIIGLITSVRPVLAVGGSILVS-NGFEPKRT 216 (488)
T ss_pred EEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCC-CcEEEEecchHHHHHHHHHHHHHHhcCCEEEEc-CCCCHHHH
Confidence 9999999999999999999999877666655556666 899999999999999888788899999999998 68999999
Q ss_pred HHHHHH--CCceEEec
Q psy13808 175 LRAIAK--EKCMEYLT 188 (190)
Q Consensus 175 ~~~i~~--~~iT~l~~ 188 (190)
+..+.+ +++|++++
T Consensus 217 ~~~~~~~~~~~t~~~~ 232 (488)
T PRK09088 217 LGRLGDPALGITHYFC 232 (488)
T ss_pred HHHHHhhccCCcEEee
Confidence 999964 88998875
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-18 Score=146.65 Aligned_cols=165 Identities=16% Similarity=0.181 Sum_probs=112.1
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCC-CCCCC----CCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCC
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYK-ADALP----TKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLN 89 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~-~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 89 (190)
++++|.++.+++.++++.++++++++++.... ...+. ... .+..+.... ........... .........
T Consensus 94 v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~ 167 (540)
T PRK05857 94 VMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIP-VIAVDIAAV--TRESEHSLDAA---SLAGNADQG 167 (540)
T ss_pred EecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccc-eeEeecccc--ccccccccccc---ccccccCCC
Confidence 45699999999999999999999999876321 11111 111 222111100 00000000000 000123356
Q ss_pred CCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhh----hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEc
Q psy13808 90 CRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGK----RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVP 165 (190)
Q Consensus 90 ~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~----~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~ 165 (190)
++++++++|||||||.||||+++|+++.++...... ...... +++.++.+|++|..++.. .+.++..|+++++.
T Consensus 168 ~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~h~~~l~~-~~~~l~~G~~~v~~ 245 (540)
T PRK05857 168 SEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVV-GETTYSPLPATHIGGLWW-ILTCLMHGGLCVTG 245 (540)
T ss_pred CCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhcccccccccc-CceeeecCCccccchHHH-HHHHhhcceeEEec
Confidence 789999999999999999999999999876543221 223444 789999999999998654 67889999988764
Q ss_pred CCCCChHHHHHHHHHCCceEEecc
Q psy13808 166 APSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 166 ~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.+++..+++.|++|++|+++++
T Consensus 246 --~~~~~~~~~~i~~~~it~~~~~ 267 (540)
T PRK05857 246 --GENTTSLLEILTTNAVATTCLV 267 (540)
T ss_pred --CCChhHHHHHHHhcCcceEEeC
Confidence 4689999999999999998753
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-18 Score=143.77 Aligned_cols=167 Identities=19% Similarity=0.181 Sum_probs=121.1
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCC-CC-----CCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccC
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSA-YK-----ADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSL 88 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~-~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 88 (190)
|+++|..+.+++.++++.++++.+++++.. .. ....+....++.... .....++.......... ......
T Consensus 90 v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~ 165 (524)
T PRK06188 90 TALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGP-VPDGVDLLAAAAKFGPA---PLVAAA 165 (524)
T ss_pred EecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCC-ccchhhHHHhhhccCcc---cccccC
Confidence 455888999999999999999999998762 11 112233344443311 11122222111110000 001123
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCC
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPS 168 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~ 168 (190)
.++++++++|||||||.||+|+++|.++..........+++.. ++++++..|++|..++. ++.++..|+++++. +.
T Consensus 166 ~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~-~~~~l~~~pl~~~~g~~--~~~~l~~G~~~~~~-~~ 241 (524)
T PRK06188 166 LPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPA-DPRFLMCTPLSHAGGAF--FLPTLLRGGTVIVL-AK 241 (524)
T ss_pred CCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCc-CcEEEEecCchhhhhHH--HHHHHHcCCEEEEc-CC
Confidence 4567999999999999999999999999988887777788887 99999999999998853 57889999999999 67
Q ss_pred CChHHHHHHHHHCCceEEecc
Q psy13808 169 FKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 169 ~~~~~~~~~i~~~~iT~l~~t 189 (190)
+++..+++.++++++|+++++
T Consensus 242 ~~~~~~~~~i~~~~~t~~~~~ 262 (524)
T PRK06188 242 FDPAEVLRAIEEQRITATFLV 262 (524)
T ss_pred CCHHHHHHHHHHhCCEEEEeh
Confidence 999999999999999998753
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-18 Score=131.08 Aligned_cols=155 Identities=12% Similarity=0.064 Sum_probs=106.9
Q ss_pred CCCcccccccCCCCCCccchhhh------------hhccCCCCCCCCCCCCCCCCCCCCcEEEEe-----e--------c
Q psy13808 7 NRGEKEDRIGESQPFRERTLSHQ------------DKIRPGRESNPRPSAYKADALPTKLTRLAL-----R--------M 61 (190)
Q Consensus 7 ~~~~~~~~v~i~p~~~~~~l~~~------------l~~~~~~~i~~~~~~~~~~~~~~~~~~i~~-----~--------~ 61 (190)
.|-++||||+|--..+.+-+.-+ ++.+++|+++++++.......+ +.++.+ . .
T Consensus 48 ~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~vp~n~s~a~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 125 (227)
T TIGR03089 48 LDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVVLAGDPDADVVVTGPDRLAAAAGS--GEVVALSLDPLGRRVAGELPP 125 (227)
T ss_pred hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEeCCCCCCCEEEeCcchhhhcccC--CceEEEeccccccCCCCCCCC
Confidence 48899999999655555544333 3567778888877644433222 222221 0 1
Q ss_pred CcccHHHHHhcCCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCC
Q psy13808 62 GTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVP 141 (190)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~p 141 (190)
+..+|.+.+........ +.+..+++|++.|+||||+ +|+++..+. ...++++ +|+++ .+|
T Consensus 126 ~~~~~~~~~~~~~~~~~-----~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~-~D~~l-~~P 185 (227)
T TIGR03089 126 GVIDFAPEVRVHGDQFA-----PYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPP-GDRVL-VLA 185 (227)
T ss_pred cccchhhhhhccCCCCC-----CCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCC-CCeEE-ecC
Confidence 11233333332111110 0113467899999999985 666665544 5567787 99999 999
Q ss_pred chhHHHHHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCce
Q psy13808 142 MFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCM 184 (190)
Q Consensus 142 l~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT 184 (190)
+||.+|+...++.+|..|+++|++ ++|+++.+++.|++||||
T Consensus 186 l~H~~gl~~~~~~~l~~G~t~v~~-~rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 186 WTDLEDFLATLLAPLAAGGSLVLV-THPDPARLDQIAETERVT 227 (227)
T ss_pred CCchHHHHHHHHHHhccCceEEEe-cCCCHHHHHHHHHhhcCC
Confidence 999999888899999999999999 799999999999999997
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-18 Score=142.90 Aligned_cols=167 Identities=17% Similarity=0.177 Sum_probs=115.2
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCCC-----CCCCCCcEEEEe-ec---------CcccHHHHHhcCCCcchh
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYKA-----DALPTKLTRLAL-RM---------GTFRLSDIMQGAGPEYHR 79 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~-----~~~~~~~~~i~~-~~---------~~~~~~~l~~~~~~~~~~ 79 (190)
++++|.++.+++.+++++++++.++++++.... ...+..+.++.. .. +..++..++....+...
T Consensus 96 vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 174 (545)
T PRK08162 96 NTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGALDYEAFLASGDPDFA- 174 (545)
T ss_pred eccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCceEEEecCccccccCCCcccccHHHHhccCCcccc-
Confidence 467999999999999999999999999873321 111222122221 00 12234444432211100
Q ss_pred hhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhC
Q psy13808 80 RREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHG 159 (190)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G 159 (190)
.....+.+++++|+|||||||.||||+++|+++..+.......+.+.. +++.++.+|++|..+....++..+ .|
T Consensus 175 ----~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~-~~~~l~~~pl~h~~~~~~~~~~~~-~~ 248 (545)
T PRK08162 175 ----WTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPK-HPVYLWTLPMFHCNGWCFPWTVAA-RA 248 (545)
T ss_pred ----ccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCC-CCeeEeccCcHhhhhHHHHHHHHH-Hc
Confidence 011224457899999999999999999999998766655555566766 889999999999998766444444 45
Q ss_pred CEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 160 STTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 160 ~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
++.++. ..++++.+++.++++++|++.++
T Consensus 249 g~~~~~-~~~~~~~~~~~l~~~~~t~~~~~ 277 (545)
T PRK08162 249 GTNVCL-RKVDPKLIFDLIREHGVTHYCGA 277 (545)
T ss_pred cEEEEe-CCCCHHHHHHHHHHcCCeEEEec
Confidence 555555 56999999999999999998764
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-18 Score=143.33 Aligned_cols=167 Identities=21% Similarity=0.231 Sum_probs=115.3
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCCC----C--CCCCCcEEEEeecC-----------------cccHHHHHh
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYKA----D--ALPTKLTRLALRMG-----------------TFRLSDIMQ 71 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~----~--~~~~~~~~i~~~~~-----------------~~~~~~l~~ 71 (190)
|+++|.++.+++.+++++++++.++++...... . .......+++.... ..++.+++.
T Consensus 99 v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (541)
T TIGR03205 99 VHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVK 178 (541)
T ss_pred EecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhcccceEEEEecccccccccccccccCCCcccccHHHHHh
Confidence 466899999999999999999999987531100 0 00111222222110 122333332
Q ss_pred cCCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhh-----hcCCcCCCcEEEEeCCchhHH
Q psy13808 72 GAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGK-----RLEFDKTDHKILLQVPMFHTF 146 (190)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~-----~~~~~~~~~~~l~~~pl~h~~ 146 (190)
...... ......++++++++|||||||.||||+++|+++......... ...... .+++++..|++|.+
T Consensus 179 ~~~~~~------~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~ 251 (541)
T TIGR03205 179 GAAAPA------EWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGD-VERVICVLPLFHIY 251 (541)
T ss_pred cCCCCC------CCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccccccCCC-CceEEEeccHHHHH
Confidence 211110 012346789999999999999999999999998765432211 111222 57899999999999
Q ss_pred HHHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 147 GTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 147 g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
++...++.++..|+++++. +.++++.+++.|+++++|++.++
T Consensus 252 ~~~~~~~~~l~~g~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~ 293 (541)
T TIGR03205 252 ALTVILLRSLRRGDLISLH-QRFDVAAVFRDIEEKRATVFPGV 293 (541)
T ss_pred HHHHHHHHHHhcCCEEEec-CCCCHHHHHHHHHHcCCeEeech
Confidence 9877788899999999988 68999999999999999998764
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-18 Score=148.49 Aligned_cols=146 Identities=21% Similarity=0.225 Sum_probs=104.0
Q ss_pred ccchhhhhhccCCCCCCCCCCCCCC-----CCCCC--CcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCCCeEE
Q psy13808 23 ERTLSHQDKIRPGRESNPRPSAYKA-----DALPT--KLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDGIN 95 (190)
Q Consensus 23 ~~~l~~~l~~~~~~~i~~~~~~~~~-----~~~~~--~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (190)
.+++.+++++++|++++++...... ...+. ...++... . +.+... .. .......++++++
T Consensus 118 ~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~----~~-----~~~~~~~~~d~a~ 184 (631)
T PRK07769 118 VGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVD-A---VPDEVG----AT-----WVPPEANEDTIAY 184 (631)
T ss_pred HHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEcc-c---cccccc----cc-----cCCCCCCCCCeEE
Confidence 5679999999999999988652210 11111 11222211 0 000000 00 0012346789999
Q ss_pred EEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCC-CC--ChH
Q psy13808 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAP-SF--KPM 172 (190)
Q Consensus 96 i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~-~~--~~~ 172 (190)
|+|||||||+||||+++|+++..........+++.+ ++++++.+|++|.+|+.. ++.+++.|+++++.++ .+ ++.
T Consensus 185 i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~-~d~~l~~~Pl~h~~gl~~-~~~~~~~G~~~~~~~~~~~~~~~~ 262 (631)
T PRK07769 185 LQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQE-GDRGVSWLPFFHDMGLIT-VLLPALLGHYITFMSPAAFVRRPG 262 (631)
T ss_pred EEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCC-cceEEEeCCCcCchhhHH-HHHHHhhCCeEEEEChHHHHhCHH
Confidence 999999999999999999999988777777778877 999999999999999765 5667778999988744 35 899
Q ss_pred HHHHHHHHCCc
Q psy13808 173 DSLRAIAKEKC 183 (190)
Q Consensus 173 ~~~~~i~~~~i 183 (190)
.+++.++++++
T Consensus 263 ~~~~~i~~~~~ 273 (631)
T PRK07769 263 RWIRELARKPG 273 (631)
T ss_pred HHHHHHHhhcc
Confidence 99999999986
|
|
| >KOG1180|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.3e-19 Score=142.45 Aligned_cols=146 Identities=17% Similarity=0.213 Sum_probs=115.5
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCC-----CCCCCCCcEEEEee----------------c--CcccHHHHHh
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYK-----ADALPTKLTRLALR----------------M--GTFRLSDIMQ 71 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~~~~~~~~i~~~----------------~--~~~~~~~l~~ 71 (190)
|-+...+..+.|.|-|++++++.|||+.+.+. ....+.++.+|.++ + ...+|++++.
T Consensus 143 VT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~ 222 (678)
T KOG1180|consen 143 VTAYATLGEEALIHSLNETESTAIFTDSELLPKLKAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEK 222 (678)
T ss_pred EEEehhcChhhhhhhhccccceEEEeCHHHHHHHHHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHh
Confidence 34466788999999999999999999998443 34556778887761 1 1356777777
Q ss_pred cCCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhc-CCcCCCcEEEEeCCchhHHHHHH
Q psy13808 72 GAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRL-EFDKTDHKILLQVPMFHTFGTAM 150 (190)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~~~~~~~~~l~~~pl~h~~g~~~ 150 (190)
.+.+...+ +....|+|+|+|+|||||||.|||||++|+|+++......... .+.+ .|+++.++||.|++-+..
T Consensus 223 lG~~~~~~-----~~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~-~D~yi~yLPLAHIlEl~a 296 (678)
T KOG1180|consen 223 LGKENEIP-----PHPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGP-KDRYIAYLPLAHILELTA 296 (678)
T ss_pred hCCcCCCC-----CCCCCCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccCcccCC-CceEEEechHHHHHHHHH
Confidence 77655311 2333789999999999999999999999999999888777766 4555 999999999999999888
Q ss_pred HHHHHHHhCCEEEEcCC
Q psy13808 151 GILNAMNHGSTTVVPAP 167 (190)
Q Consensus 151 ~~~~~l~~G~~vv~~~~ 167 (190)
. +.++..|+++-+.++
T Consensus 297 E-~~~ft~G~~iGY~S~ 312 (678)
T KOG1180|consen 297 E-LVCFTWGGRIGYSSP 312 (678)
T ss_pred H-HHHHhhCCEeecCCc
Confidence 6 567889999887743
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.4e-18 Score=140.78 Aligned_cols=161 Identities=16% Similarity=0.188 Sum_probs=120.0
Q ss_pred cccCCCCCCccchhhhhhccCCCCCCCCCCCCCCCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCCCe
Q psy13808 14 RIGESQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDG 93 (190)
Q Consensus 14 ~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (190)
.+++|+.++.+++.++++..+++.++++...... ..... ++... ....+........ ......+++.
T Consensus 77 ~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~--~~~~~-~~~~~----~~~~~~~~~~~~~------~~~~~~~~~~ 143 (502)
T TIGR01734 77 YIPVDTSIPSERIEMIIEAAGPELVIHTAELSID--AVGTQ-IITLS----ALEQAETSGGPVS------FDHAVKGDDN 143 (502)
T ss_pred EeCCCCcChHHHHHHHHHhcCCCEEEeccccccc--ccCCc-eEEch----HhhhhhhhcCCcc------ccccCCCCCe
Confidence 3466899999999999999999999998763221 11222 22110 1111111111110 0123467899
Q ss_pred EEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCC--CCh
Q psy13808 94 INIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPS--FKP 171 (190)
Q Consensus 94 ~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~--~~~ 171 (190)
++++|||||||.||+|+++|+++..+.......++... ++++++..|++|..++ +.++.++..|+++++.++. .++
T Consensus 144 ~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~ 221 (502)
T TIGR01734 144 YYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSE-GKQFLNQAPFSFDLSV-MDLYPCLASGGTLHCLDKDITNNF 221 (502)
T ss_pred EEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCC-CceEEeecCceechhH-HHHHHHHHCCCEEEEcCHHHhcCH
Confidence 99999999999999999999999988877777777776 8999999999999885 5588999999999998532 589
Q ss_pred HHHHHHHHHCCceEEecc
Q psy13808 172 MDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 172 ~~~~~~i~~~~iT~l~~t 189 (190)
..+++.++++++|.+.++
T Consensus 222 ~~~~~~i~~~~~~~~~~~ 239 (502)
T TIGR01734 222 KLLFEELPKTGLNVWVST 239 (502)
T ss_pred HHHHHHHHHcCCeEEEEC
Confidence 999999999999998764
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.1e-18 Score=139.10 Aligned_cols=152 Identities=23% Similarity=0.208 Sum_probs=114.3
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCCCCCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCCCeEE
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDGIN 95 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (190)
+++|.++.+++.+++++++++.+++++.... . . +. ...+..+........ ........+++++
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~----~---~~----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 115 (436)
T TIGR01923 53 MLNTRLTENERTNQLEDLDVQLLLTDSLLEE-K----D---FQ----ADSLDRIEAAGRYET-----SLSASFNMDQIAT 115 (436)
T ss_pred ecCcCCCHHHHHHHHHhcCCCEEEEcCcccc-c----c---ee----ecchHhhhhcccccc-----cccccCCcCceEE
Confidence 4588889999999999999999988865211 0 0 00 011222211111110 0112346789999
Q ss_pred EEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChHHHH
Q psy13808 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSL 175 (190)
Q Consensus 96 i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~ 175 (190)
++|||||||.||+|+++|+++..........+++.+ +|+++...|++|..++. .++.++..|+++++. +.+ ..++
T Consensus 116 i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~-~~~~~l~~g~~~~~~-~~~--~~~~ 190 (436)
T TIGR01923 116 LMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTE-DDNWLLSLPLYHISGLS-ILFRWLIEGATLRIV-DKF--NQLL 190 (436)
T ss_pred EEeCCCCCCCCcEEEEehHHHHHHHHHHHhhcCCCC-CceEEEccCcHhHHHHH-HHHHHHhcCceEEec-chH--HHHH
Confidence 999999999999999999999988887778888887 99999999999999864 578999999999998 444 4999
Q ss_pred HHHHHCCceEEecc
Q psy13808 176 RAIAKEKCMEYLTK 189 (190)
Q Consensus 176 ~~i~~~~iT~l~~t 189 (190)
+.++++++|++.++
T Consensus 191 ~~l~~~~~t~~~~~ 204 (436)
T TIGR01923 191 EMIANERVTHISLV 204 (436)
T ss_pred HHHHHhCCeEEEeH
Confidence 99999999998753
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.8e-18 Score=142.78 Aligned_cols=169 Identities=19% Similarity=0.188 Sum_probs=114.5
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCCCC-----CC--------------CCCCcEEEEe--------------ecC
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAYKA-----DA--------------LPTKLTRLAL--------------RMG 62 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~-----~~--------------~~~~~~~i~~--------------~~~ 62 (190)
+++|.++.+++.++++++++++++++...... .. .+..+.++.. ...
T Consensus 104 ~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (562)
T PRK12492 104 NTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAYHLPQ 183 (562)
T ss_pred ccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhccCceEEEeechhhccccccchhcccccccccccccccCCcc
Confidence 66899999999999999999999987542110 00 0111110000 001
Q ss_pred cccHHHHHhcCCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcC---------CcCCC
Q psy13808 63 TFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLE---------FDKTD 133 (190)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~---------~~~~~ 133 (190)
...|++++....... .......++++++|+|||||||.||||+++|+++..+.......+. +...+
T Consensus 184 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (562)
T PRK12492 184 AVPFKQALRQGRGLS-----LKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQ 258 (562)
T ss_pred cccHHHHHhccCCCC-----CCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCCC
Confidence 122333332211110 0112346689999999999999999999999999776554433322 22324
Q ss_pred cEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 134 HKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 134 ~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+++++.+|++|.+++.+.++..+..|++.++....+++..+++.++++++|++.++
T Consensus 259 ~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~ 314 (562)
T PRK12492 259 EVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGL 314 (562)
T ss_pred eEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCc
Confidence 67899999999999877778888899988776556799999999999999998753
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.8e-18 Score=141.46 Aligned_cols=169 Identities=18% Similarity=0.196 Sum_probs=115.5
Q ss_pred cccCCCCCCccchhhhhhccCCCCCCCCCCCCC-----CCCCCCCcEEEEee----------------------------
Q psy13808 14 RIGESQPFRERTLSHQDKIRPGRESNPRPSAYK-----ADALPTKLTRLALR---------------------------- 60 (190)
Q Consensus 14 ~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~~~~~~~~i~~~---------------------------- 60 (190)
-|++||.++.+++.++++++++++++++..... ....+ ...++...
T Consensus 103 ~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (560)
T PRK08751 103 VVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTP-VKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYR 181 (560)
T ss_pred EeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCC-ccEEEEechhhhcccccchhhhhhhhhhhccccccC
Confidence 355689999999999999999999999865211 01111 12222210
Q ss_pred -cCcccHHHHHhcCCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcC----CcCCCcE
Q psy13808 61 -MGTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLE----FDKTDHK 135 (190)
Q Consensus 61 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~----~~~~~~~ 135 (190)
.+...+.+.+...... ........++++++++|||||||.||||+++|+++..........++ +.+.+++
T Consensus 182 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~ 256 (560)
T PRK08751 182 INGAIRFREALALGRKH-----SMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEV 256 (560)
T ss_pred CCccccHHHHHhccCCC-----CCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCce
Confidence 0001122222111100 00112346789999999999999999999999999877665544433 3332467
Q ss_pred EEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEEec
Q psy13808 136 ILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLT 188 (190)
Q Consensus 136 ~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~ 188 (190)
+++..|++|.+++....+.++..|+++++..+.+++..+++.+++|++|++.+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~ 309 (560)
T PRK08751 257 VITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTG 309 (560)
T ss_pred EEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecC
Confidence 88999999999977666777888888877656789999999999999999865
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-17 Score=139.69 Aligned_cols=171 Identities=19% Similarity=0.178 Sum_probs=115.0
Q ss_pred cccccCCCCCCccchhhhhhccCCCCCCCCCCCCCCC----CCCCCcEEEEe-ecCcc----------------------
Q psy13808 12 EDRIGESQPFRERTLSHQDKIRPGRESNPRPSAYKAD----ALPTKLTRLAL-RMGTF---------------------- 64 (190)
Q Consensus 12 ~~~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~----~~~~~~~~i~~-~~~~~---------------------- 64 (190)
+.-|++||.++.+++.++++.++++.++++....... .......++.. .....
T Consensus 99 ~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (563)
T PRK06710 99 GIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKV 178 (563)
T ss_pred eEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhhccceeEEeccccccccccccccchhhcccccccccc
Confidence 3456779999999999999999999999987522110 00011111111 00000
Q ss_pred -------cHHHHHhcCCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhh-hcCCcCCCcEE
Q psy13808 65 -------RLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGK-RLEFDKTDHKI 136 (190)
Q Consensus 65 -------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~-~~~~~~~~~~~ 136 (190)
.|..+....... .......++++++++|||||||.||+|+++|+++..+...... .++....++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~ 252 (563)
T PRK06710 179 SESETIHLWNSVEKEVNTG------VEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVV 252 (563)
T ss_pred cccchhhhhhhhhhccccc------cccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceE
Confidence 001100000000 0011123578999999999999999999999998765433222 23444336788
Q ss_pred EEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 137 LLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 137 l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
++.+|++|.+|+...++.++..|+++++. +.+++..+++.|+++++|++.++
T Consensus 253 l~~~p~~~~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~ 304 (563)
T PRK06710 253 LGVLPFFHVYGMTAVMNLSIMQGYKMVLI-PKFDMKMVFEAIKKHKVTLFPGA 304 (563)
T ss_pred EEeCchHHHHHHHHHHHHHHHcCCeEEEc-CCCCHHHHHHHHHHcCCeEEecc
Confidence 99999999999776677789999999998 67999999999999999998753
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=140.31 Aligned_cols=170 Identities=19% Similarity=0.189 Sum_probs=114.8
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCCC----CCCCCCcEEEEee----------------------------cC
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYKA----DALPTKLTRLALR----------------------------MG 62 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~----~~~~~~~~~i~~~----------------------------~~ 62 (190)
++++|.++.+++.++++.+++++++++...... ........++... .+
T Consensus 101 v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (557)
T PRK07059 101 VNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSLPG 180 (557)
T ss_pred eccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcccCCceeEEecccccccccccccccccccccccccccCCCC
Confidence 366899999999999999999999987652110 0011112221110 01
Q ss_pred cccHHHHHhcCCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhc----CCc--CCCcEE
Q psy13808 63 TFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRL----EFD--KTDHKI 136 (190)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~----~~~--~~~~~~ 136 (190)
...+++++....... .......++++++|+|||||||.||+|+++|.++..+........ ... .....+
T Consensus 181 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (557)
T PRK07059 181 HVRFNDALAEGARQT-----FKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNF 255 (557)
T ss_pred cccHHHHhhccCCCC-----CCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcEE
Confidence 122333332221111 012345678999999999999999999999999987654332221 111 114578
Q ss_pred EEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 137 LLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 137 l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
++.+|++|.+++....+.++..|++.++.+...++..+++.++++++|.+.++
T Consensus 256 ~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~ 308 (557)
T PRK07059 256 VCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAV 308 (557)
T ss_pred EEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecC
Confidence 88999999998776677888889988887556789999999999999998753
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=138.18 Aligned_cols=159 Identities=14% Similarity=0.178 Sum_probs=119.0
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCCCCCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCCCeEE
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDGIN 95 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (190)
++++.++.+++.++++..++++++++..... .. .....+ .++++......... ........++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~-------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 147 (503)
T PRK04813 81 PVDVSSPAERIEMIIEVAKPSLIIATEELPL--EI-LGIPVI-------TLDELKDIFATGNP---YDFDHAVKGDDNYY 147 (503)
T ss_pred cCCCCChHHHHHHHHHhcCCCEEEecccccc--cc-cCCcEE-------ehHHhhhhhhcccc---ccccccCCCCCcEE
Confidence 5689999999999999999999999876311 11 111111 12222211100000 00123456789999
Q ss_pred EEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCC--CChHH
Q psy13808 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPS--FKPMD 173 (190)
Q Consensus 96 i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~--~~~~~ 173 (190)
++|||||||.||+|.++|+++..........+++.. ++++++..|++|..+. +.++.++..|+++++.++. +++..
T Consensus 148 i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~-~~~~~~l~~g~~~v~~~~~~~~~~~~ 225 (503)
T PRK04813 148 IIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPE-GPQFLNQAPYSFDLSV-MDLYPTLASGGTLVALPKDMTANFKQ 225 (503)
T ss_pred EEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCc-CceeeecCCcchhHhH-HHHHHHHhcCCEEEEcChhhhcCHHH
Confidence 999999999999999999999988877777778877 8999999999999885 5578899999999998543 58999
Q ss_pred HHHHHHHCCceEEecc
Q psy13808 174 SLRAIAKEKCMEYLTK 189 (190)
Q Consensus 174 ~~~~i~~~~iT~l~~t 189 (190)
+++.++++++|++..+
T Consensus 226 ~~~~~~~~~~t~~~~~ 241 (503)
T PRK04813 226 LFETLPQLPINVWVST 241 (503)
T ss_pred HHHHHHHcCCeEEEeC
Confidence 9999999999998764
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-18 Score=141.24 Aligned_cols=166 Identities=23% Similarity=0.278 Sum_probs=113.0
Q ss_pred cccCCCCCCccchhhhhhccCCCCCCC----CCCCC---C--CCCCCCCcEEEEee-cCcccHHHHHhcCCCcchhhhhh
Q psy13808 14 RIGESQPFRERTLSHQDKIRPGRESNP----RPSAY---K--ADALPTKLTRLALR-MGTFRLSDIMQGAGPEYHRRREQ 83 (190)
Q Consensus 14 ~v~i~p~~~~~~l~~~l~~~~~~~i~~----~~~~~---~--~~~~~~~~~~i~~~-~~~~~~~~l~~~~~~~~~~~~~~ 83 (190)
-|+++|.++.+++.++++.+++++|++ +...+ . .........++.+. ......+.+.........
T Consensus 73 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 147 (417)
T PF00501_consen 73 PVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDLPKKEALKSASLSDEP----- 147 (417)
T ss_dssp EEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSCTTCHHHHHHHHCHCS-----
T ss_pred ccccccccccccccccccccceeEEEEeccccccccccchhhhcccccccccccccccccccccccccccccccc-----
Confidence 345599999999999999999999997 22210 0 11112223333332 111111111111100000
Q ss_pred hhcc-CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhh--hhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCC
Q psy13808 84 ISKS-LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIG--KRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGS 160 (190)
Q Consensus 84 ~~~~-~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~--~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~ 160 (190)
... ..++++++++|||||||.||+|+++|+++.+...... ...++ .|++++.+|++|.+|+...++.++..|+
T Consensus 148 -~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~---~d~~l~~~p~~~~~g~~~~~~~~l~~G~ 223 (417)
T PF00501_consen 148 -QSPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGL---GDRILSFLPLSHIFGLISALLAALFSGA 223 (417)
T ss_dssp -HSTTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTT---TTEEEESS-TTSHHHHHHHHHHHHHCTS
T ss_pred -ccCCCCccceeEeecccccccccccccccccccccccccccccccccc---CceEEeeccccccccccccccccccccc
Confidence 000 0579999999999999999999999999998876653 11222 1699999999999998678999999999
Q ss_pred EEEEcCCCCC---hHHHHHHHHHCCceEEecc
Q psy13808 161 TTVVPAPSFK---PMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 161 ~vv~~~~~~~---~~~~~~~i~~~~iT~l~~t 189 (190)
+++++ +.+. ++.+++.++++++|++.++
T Consensus 224 ~~~~~-~~~~~~~~~~~~~~i~~~~~t~~~~~ 254 (417)
T PF00501_consen 224 TLVLP-SPFDLFDPESLLELISRYKPTILFAV 254 (417)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHHHHTESEEEEE
T ss_pred ccccc-ccccccccccchhccccccccccccc
Confidence 99999 4443 5778999999999999875
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=139.13 Aligned_cols=164 Identities=20% Similarity=0.265 Sum_probs=115.0
Q ss_pred cccCCCCCCccchhhhhhccCCCCCCCCCCCCCC--CCCCCCcEEEEe-------------------ecCcccHHHHHhc
Q psy13808 14 RIGESQPFRERTLSHQDKIRPGRESNPRPSAYKA--DALPTKLTRLAL-------------------RMGTFRLSDIMQG 72 (190)
Q Consensus 14 ~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~--~~~~~~~~~i~~-------------------~~~~~~~~~l~~~ 72 (190)
-++++|.++.+++.++++.++|++++++...... ...+....++.. .....+++++...
T Consensus 63 ~v~l~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (509)
T PRK12406 63 AVPVNWHFKPEEIAYILEDSGARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQ 142 (509)
T ss_pred EEecCcccCHHHHHHHHhccCCcEEEEccchhhhhhhhhhcccceeecccccccccccccccccccCCCCccCHHHHhcc
Confidence 3456899999999999999999999988763321 111111111111 0111223333221
Q ss_pred CCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHH---HHHHHhhhhcCCcCCCcEEEEeCCchhHHHHH
Q psy13808 73 AGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLI---NNSNFIGKRLEFDKTDHKILLQVPMFHTFGTA 149 (190)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~---~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~ 149 (190)
... .....++++++++|||||||.||+|+++|.... .........+++.+ ++++++..|++|..+..
T Consensus 143 ~~~---------~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~ 212 (509)
T PRK12406 143 QEP---------YDGPPVPQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKP-GIRALLTGPLYHSAPNA 212 (509)
T ss_pred cCc---------cCCCCCCCceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCC-CceEEEEeCCcccchHH
Confidence 111 122356899999999999999999998776543 33333445667777 89999999999998866
Q ss_pred HHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 150 MGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 150 ~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+. +.++..|+++++. +.++++.+++.++++++|.+.++
T Consensus 213 ~~-~~~~~~g~~~~~~-~~~~~~~~~~~l~~~~~t~~~~~ 250 (509)
T PRK12406 213 YG-LRAGRLGGVLVLQ-PRFDPEELLQLIERHRITHMHMV 250 (509)
T ss_pred HH-HHHHhhheEEEEc-cCCCHHHHHHHHHHcCCeEEEcc
Confidence 64 5578889999998 67899999999999999998764
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=6e-18 Score=143.16 Aligned_cols=154 Identities=14% Similarity=0.110 Sum_probs=110.7
Q ss_pred ccchhhhhhccCCCCCCCCCCCCCC--CCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCCCeEEEEecC
Q psy13808 23 ERTLSHQDKIRPGRESNPRPSAYKA--DALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTS 100 (190)
Q Consensus 23 ~~~l~~~l~~~~~~~i~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TS 100 (190)
.+++.++++.+++++++++...... ........+.. .++.++........ ......++++++|+|||
T Consensus 117 ~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~------~~~~~~~~~~a~i~~TS 185 (579)
T PRK09192 117 IAQLRGMLASAQPAAIITPDELLPWVNEATHGNPLLHV-----LSHAWFKALPEADV------ALPRPTPDDIAYLQYSS 185 (579)
T ss_pred HHHHHHHHHhcCCCEEEeChHHHHHHHHhhccccccce-----eehhhhcccCCCcc------ccCCCCCCCeEEEEecC
Confidence 5789999999999999988762210 00001111111 12333322211110 01234678999999999
Q ss_pred CCCCCCceeEechHHHHHHHHHhhh-hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCC-C--CChHHHHH
Q psy13808 101 GTTGHPKAAFLTHYNLINNSNFIGK-RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAP-S--FKPMDSLR 176 (190)
Q Consensus 101 GTTG~PKgv~~sh~~~~~~~~~~~~-~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~-~--~~~~~~~~ 176 (190)
||||.||||+++|+++......... .+++.+ +|+++..+|++|.+|+...++.++..|+++++.+. . .++..+++
T Consensus 186 GTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~-~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~ 264 (579)
T PRK09192 186 GSTRFPRGVIITHRALMANLRAISHDGLKVRP-GDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLD 264 (579)
T ss_pred CCCCCCceEEeeHHHHHHHHHHHHhhcccCCC-CCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHH
Confidence 9999999999999999988776666 678877 99999999999999987777888999999987632 2 37889999
Q ss_pred HHHHCCceEEec
Q psy13808 177 AIAKEKCMEYLT 188 (190)
Q Consensus 177 ~i~~~~iT~l~~ 188 (190)
.++++++|+++.
T Consensus 265 ~i~~~~~t~~~~ 276 (579)
T PRK09192 265 LISRNRGTISYS 276 (579)
T ss_pred HHHhcCcEEEeC
Confidence 999999987654
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.5e-18 Score=143.23 Aligned_cols=158 Identities=15% Similarity=0.172 Sum_probs=109.9
Q ss_pred cCCC---CCCccchhhhhhccCCCCCCCCCCCCCCC-----C--CCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhh
Q psy13808 16 GESQ---PFRERTLSHQDKIRPGRESNPRPSAYKAD-----A--LPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQIS 85 (190)
Q Consensus 16 ~i~p---~~~~~~l~~~l~~~~~~~i~~~~~~~~~~-----~--~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (190)
++++ .++.+++.++|++++++++++++...... . ......++... . .++.. .... ..
T Consensus 88 pl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~--~~~~------~~ 154 (578)
T PRK05850 88 PLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVD--L---LDLDS--PRGS------DA 154 (578)
T ss_pred ecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeec--c---ccccc--CCcc------cc
Confidence 4465 45788999999999999999987622210 0 00111122110 0 00000 0000 01
Q ss_pred ccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhc-C-----CcCCCcEEEEeCCchhHHHHHHHHHHHHHhC
Q psy13808 86 KSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRL-E-----FDKTDHKILLQVPMFHTFGTAMGILNAMNHG 159 (190)
Q Consensus 86 ~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~-----~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G 159 (190)
....++++++|+|||||||.||||+++|+++..++......+ . ... ++++++.+|++|..|+...++.++..|
T Consensus 155 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~pl~h~~g~~~~~~~~l~~G 233 (578)
T PRK05850 155 RPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPP-DTTVVSWLPFYHDMGLVLGVCAPILGG 233 (578)
T ss_pred CCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCC-cceEEEECCCCCCchhHHHHHHHHhcC
Confidence 234678999999999999999999999999987765443322 2 233 789999999999999888889999999
Q ss_pred CEEEEcCCC---CChHHHHHHHHHCCceEEe
Q psy13808 160 STTVVPAPS---FKPMDSLRAIAKEKCMEYL 187 (190)
Q Consensus 160 ~~vv~~~~~---~~~~~~~~~i~~~~iT~l~ 187 (190)
+++++.++. .++..+++.+++++++.+.
T Consensus 234 ~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~ 264 (578)
T PRK05850 234 CPAVLTSPVAFLQRPARWMQLLASNPHAFSA 264 (578)
T ss_pred CcEEEeCHHHHHHCHHHHHHHHHHcCCeEEe
Confidence 999998432 2799999999999998654
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.3e-18 Score=141.12 Aligned_cols=99 Identities=21% Similarity=0.303 Sum_probs=86.8
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCc-CCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcC
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFD-KTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPA 166 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~-~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~ 166 (190)
..++++++|+|||||||.||||+++|+++.+.+......+++. + +|++++.+|++|.+|+. .++.++..|+++++.+
T Consensus 149 ~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~-~d~~l~~~pl~h~~g~~-~~~~~l~~G~~~~~~~ 226 (525)
T PRK05851 149 PDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAA-TDVGCSWLPLYHDMGLA-FLLTAALAGAPLWLAP 226 (525)
T ss_pred CCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCC-CCeEEEcCCCccCccHH-HHHHHHHcCCeEEEcC
Confidence 4678999999999999999999999999998888777778887 6 99999999999999965 5788999999999984
Q ss_pred C-CC--ChHHHHHHHHHCCceEEec
Q psy13808 167 P-SF--KPMDSLRAIAKEKCMEYLT 188 (190)
Q Consensus 167 ~-~~--~~~~~~~~i~~~~iT~l~~ 188 (190)
+ .| ++..+++.++++++|.+..
T Consensus 227 ~~~~~~~~~~~~~~i~~~~~t~~~~ 251 (525)
T PRK05851 227 TTAFSASPFRWLSWLSDSRATLTAA 251 (525)
T ss_pred HHHHHHCHHHHHHHHHHhCCeEEeC
Confidence 2 34 6889999999999997743
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-17 Score=139.12 Aligned_cols=155 Identities=17% Similarity=0.193 Sum_probs=107.9
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCCCCCCCCCC-cEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCCCeE
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTK-LTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDGI 94 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (190)
+++|.++.+++.++++.++++.+++++..... +... ..++.+.... ... . .. . .....+++.+
T Consensus 114 pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~--~~~~~~~~~~~~~~~---~~~-~-~~-~--------~~p~~~~~~~ 177 (516)
T PRK13383 114 PISTEFRSDALAAALRAHHISTVVADNEFAER--IAGADDAVAVIDPAT---AGA-E-ES-G--------GRPAVAAPGR 177 (516)
T ss_pred EcCccCCHHHHHHHHhcCCCCEEEEchhHHHH--HHhhhcceEEeccch---hhh-h-cC-C--------CCCCCCCCCc
Confidence 33899999999999999999999998763211 1111 1122211110 000 0 00 0 0111345667
Q ss_pred EEEecCCCCCCCceeEechHHHHHHH--HHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChH
Q psy13808 95 NIQFTSGTTGHPKAAFLTHYNLINNS--NFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPM 172 (190)
Q Consensus 95 ~i~~TSGTTG~PKgv~~sh~~~~~~~--~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~ 172 (190)
+++|||||||.||||+++|....... ......+++.+ +|+++..+|++|.+|+.. ++.++..|+++++. ..++++
T Consensus 178 ~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~~~~-~~~~~~ 254 (516)
T PRK13383 178 IVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRT-GSRISVAMPMFHGLGLGM-LMLTIALGGTVLTH-RHFDAE 254 (516)
T ss_pred EEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCC-CCeEEEecCCcchhhHHH-HHHHHhcCCEEEEC-CCCCHH
Confidence 89999999999999999998432211 12223456666 899999999999999755 67789999999988 689999
Q ss_pred HHHHHHHHCCceEEecc
Q psy13808 173 DSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 173 ~~~~~i~~~~iT~l~~t 189 (190)
.+++.++++++|.+.++
T Consensus 255 ~~~~~i~~~~~t~~~~~ 271 (516)
T PRK13383 255 AALAQASLHRADAFTAV 271 (516)
T ss_pred HHHHHHHHhCCcEEEec
Confidence 99999999999998753
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-17 Score=136.90 Aligned_cols=163 Identities=13% Similarity=0.107 Sum_probs=107.6
Q ss_pred cccCCCCCCccchhhhhhccCCCCCCCCCCCCCC-CCC-CCCcEEEEee---cCcccHHHHHhcCCCcchhhhhhhhccC
Q psy13808 14 RIGESQPFRERTLSHQDKIRPGRESNPRPSAYKA-DAL-PTKLTRLALR---MGTFRLSDIMQGAGPEYHRRREQISKSL 88 (190)
Q Consensus 14 ~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~-~~~-~~~~~~i~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 88 (190)
-++++|.++++++.+++++++++.++++...... ... ......+... .....+++...... ....
T Consensus 76 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 145 (501)
T PRK13390 76 ITAINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGADLPLRLSFGGEIDGFGSFEAALAGAG----------PRLT 145 (501)
T ss_pred EeccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHhhhccceEEEecCcccccccHHHHhcccC----------CCCC
Confidence 3456999999999999999999999987652110 000 1111112211 11112222221110 0011
Q ss_pred CCCCeEEEEecCCCCCCCceeEe--chHHHHHHHH----HhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEE
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFL--THYNLINNSN----FIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTT 162 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~--sh~~~~~~~~----~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~v 162 (190)
...+.++|+|||||||.||||++ +|+++..... .....+.+.. +++++..+|++|.+++.+. +..+..|+++
T Consensus 146 ~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~h~~~~~~~-~~~~~~g~~~ 223 (501)
T PRK13390 146 EQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISE-SDIYYSSAPIYHAAPLRWC-SMVHALGGTV 223 (501)
T ss_pred CCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCC-CCeEEecccchhhhHHHHH-HHHHhcCceE
Confidence 22357999999999999999995 5555543221 1223456666 8999999999999986553 3456789999
Q ss_pred EEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 163 VVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 163 v~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
++. +.++++.+++.|+++++|++.++
T Consensus 224 ~~~-~~~~~~~~~~~i~~~~~t~~~~~ 249 (501)
T PRK13390 224 VLA-KRFDAQATLGHVERYRITVTQMV 249 (501)
T ss_pred EEc-CCcCHHHHHHHHHHcCCeEEEec
Confidence 988 68999999999999999998753
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.9e-17 Score=135.64 Aligned_cols=102 Identities=28% Similarity=0.310 Sum_probs=87.3
Q ss_pred cCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcC
Q psy13808 87 SLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPA 166 (190)
Q Consensus 87 ~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~ 166 (190)
...++++++|+|||||||.||||+++|+++..........+++....|++++.+|++|..++...+..++..|+++++.+
T Consensus 148 ~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~ 227 (545)
T PRK07768 148 ETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVT 227 (545)
T ss_pred CCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeC
Confidence 44679999999999999999999999999998877777777777623899999999999998777788899999999874
Q ss_pred CC---CChHHHHHHHHHCCceEEec
Q psy13808 167 PS---FKPMDSLRAIAKEKCMEYLT 188 (190)
Q Consensus 167 ~~---~~~~~~~~~i~~~~iT~l~~ 188 (190)
+. .++..+++.++++++|++.+
T Consensus 228 ~~~~~~~~~~~~~~i~~~~~~~~~~ 252 (545)
T PRK07768 228 PMDFLRDPLLWAELISKYRGTMTAA 252 (545)
T ss_pred HHHHHHhHHHHHHHHHHhCCEEEEC
Confidence 32 37889999999999998754
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-17 Score=135.66 Aligned_cols=162 Identities=17% Similarity=0.183 Sum_probs=113.4
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCCC-----CCCCCCCcEEEEeec-----CcccHHHHHhcCCCcchhhhhhhh
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAYK-----ADALPTKLTRLALRM-----GTFRLSDIMQGAGPEYHRRREQIS 85 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~~~~~~~~i~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~ 85 (190)
++++.++.+++.+++++++++.++++..... ....+.....+.... ....+.+.....+. .
T Consensus 78 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 148 (511)
T PRK13391 78 CVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGELEGFVGYAEAVAGLPA---------T 148 (511)
T ss_pred ccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCCCcccccHHHHhcCCCC---------C
Confidence 5689999999999999999999999876322 112233333333311 11122222221110 0
Q ss_pred ccCCCCCeEEEEecCCCCCCCceeEe--chHHHHHH---HHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCC
Q psy13808 86 KSLNCRDGINIQFTSGTTGHPKAAFL--THYNLINN---SNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGS 160 (190)
Q Consensus 86 ~~~~~~~~~~i~~TSGTTG~PKgv~~--sh~~~~~~---~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~ 160 (190)
...+.++.++++|||||||.||||++ +|.++... .......+++.. ++++++..|++|..++.. .+.++..|+
T Consensus 149 ~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~p~~h~~~~~~-~~~~~~~g~ 226 (511)
T PRK13391 149 PIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRS-DMVYLSPAPLYHSAPQRA-VMLVIRLGG 226 (511)
T ss_pred CCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCC-CCeEEEcCCHHHHHHHHH-HHHHHHcCc
Confidence 11233467899999999999999995 46665432 233345566766 899999999999988654 677899999
Q ss_pred EEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 161 TTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 161 ~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
++++. +.++++.+++.++++++|++.++
T Consensus 227 ~~~~~-~~~~~~~~~~~i~~~~~t~~~~~ 254 (511)
T PRK13391 227 TVIVM-EHFDAEQYLALIEEYGVTHTQLV 254 (511)
T ss_pred eEEEC-CCCCHHHHHHHHHHhCCeEEEeh
Confidence 99998 67999999999999999998764
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.3e-17 Score=134.96 Aligned_cols=164 Identities=16% Similarity=0.152 Sum_probs=113.7
Q ss_pred cccCCCCCCccchhhhhhccCCCCCCCCCCCCCC-----CCCC-CCcEEEEee---cCcccHHHHHhcCCCcchhhhhhh
Q psy13808 14 RIGESQPFRERTLSHQDKIRPGRESNPRPSAYKA-----DALP-TKLTRLALR---MGTFRLSDIMQGAGPEYHRRREQI 84 (190)
Q Consensus 14 ~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~-----~~~~-~~~~~i~~~---~~~~~~~~l~~~~~~~~~~~~~~~ 84 (190)
.++++|.++.+++.++++.+++++++++...... ...+ ....++..+ .....+++.......
T Consensus 63 ~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 133 (502)
T PRK08276 63 YTPINWHLTAAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLLVVAGPVPGFRSYEEALAAQPD--------- 133 (502)
T ss_pred EEecccccCHHHHHHHHhcCCCCEEEEccchhhHHHHHhhhccccccEEEEeCCCCCccccHHHHHhcCCC---------
Confidence 3455888999999999999999999998763221 1122 233333321 122334444332111
Q ss_pred hccCCCCCeEEEEecCCCCCCCceeEechHHHHHHH------HHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHh
Q psy13808 85 SKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNS------NFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNH 158 (190)
Q Consensus 85 ~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~------~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~ 158 (190)
......++.++++|||||||.||+|+++|+++.... ........... ++++++..|++|..++.+ .+.++..
T Consensus 134 ~~~~~~~~~a~i~~TSGtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~-~~~~~~~ 211 (502)
T PRK08276 134 TPIADETAGADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGP-DSVYLSPAPLYHTAPLRF-GMSALAL 211 (502)
T ss_pred CCCCCCCcceEEEECCCCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCC-CCEEEEcCcHHHHHHHHH-HHHHHhc
Confidence 112345678999999999999999999987654321 11122222334 889999999999999766 4578999
Q ss_pred CCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 159 GSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 159 G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
|+++++. +.+++..+++.++++++|++.++
T Consensus 212 g~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~ 241 (502)
T PRK08276 212 GGTVVVM-EKFDAEEALALIERYRVTHSQLV 241 (502)
T ss_pred cceEEEc-CCCCHHHHHHHHHHhCCeEEEeh
Confidence 9999998 67999999999999999998753
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=134.67 Aligned_cols=169 Identities=15% Similarity=0.159 Sum_probs=113.4
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCCC----CCCCCCcEEEEee--c---------------------------
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYKA----DALPTKLTRLALR--M--------------------------- 61 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~----~~~~~~~~~i~~~--~--------------------------- 61 (190)
|+++|.++.+++.++++.++++.++++++.... ........++... .
T Consensus 102 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (560)
T PRK08974 102 VNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYHLP 181 (560)
T ss_pred eccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhcCcceEEEecccccccccccccccchhhhcccccccccCC
Confidence 456899999999999999999999987652210 0001112222110 0
Q ss_pred CcccHHHHHhcCCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcC--CcCCCcEEEEe
Q psy13808 62 GTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLE--FDKTDHKILLQ 139 (190)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~~~~~~~l~~ 139 (190)
....+.+......... .......++++++++|||||||.||+|+++|+++..+.......+. ....++.++..
T Consensus 182 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (560)
T PRK08974 182 DAISFRSALHKGRRMQ-----YVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTA 256 (560)
T ss_pred CcccHHHHhhccCCCC-----CCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEEe
Confidence 0001111111100000 0012246789999999999999999999999999876554333221 12226788999
Q ss_pred CCchhHHHHHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEEec
Q psy13808 140 VPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLT 188 (190)
Q Consensus 140 ~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~ 188 (190)
+|++|.+++....+..+..|+++++..+..++..+++.+++|++|.+.+
T Consensus 257 ~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~ 305 (560)
T PRK08974 257 LPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITG 305 (560)
T ss_pred CcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcC
Confidence 9999999987777788889999887655678999999999999999865
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.6e-17 Score=134.01 Aligned_cols=142 Identities=18% Similarity=0.143 Sum_probs=103.2
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCCCCCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCCCeEE
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDGIN 95 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (190)
+++|.++++++.++++.++++.++++.+.... ....... +. ..... ......++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~--------~~-----~~~~~------~~~~~~~~~~a~ 139 (458)
T PRK09029 82 PLNPQLPQPLLEELLPSLTLDFALVLEGENTF---SALTSLH--------LQ-----LVEGA------HAVAWQPQRLAT 139 (458)
T ss_pred ecCCCCCHHHHHHHHHhcCCCEEEEcCcccch---hhccccc--------cc-----ccccc------CcccCCCCCeEE
Confidence 55788888888888888888888877653211 1111000 00 00000 012346789999
Q ss_pred EEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChHHHH
Q psy13808 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSL 175 (190)
Q Consensus 96 i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~ 175 (190)
++|||||||.||||+++|+++..........+++.+ +|+++..+|++|.+|+.. ++.++..|+++++.+ . ..++
T Consensus 140 i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~-~~~~l~~~p~~h~~g~~~-~~~~l~~G~~v~~~~-~---~~~~ 213 (458)
T PRK09029 140 MTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTA-QDSWLLSLPLFHVSGQGI-VWRWLYAGATLVVRD-K---QPLE 213 (458)
T ss_pred EEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCc-cceEEEecCcHhhhhhHH-HHHHHhCCceEEeCC-h---HHHH
Confidence 999999999999999999999998887777788887 999999999999999654 677899999999983 2 5567
Q ss_pred HHHHHCCceEEe
Q psy13808 176 RAIAKEKCMEYL 187 (190)
Q Consensus 176 ~~i~~~~iT~l~ 187 (190)
+.++ ++|.+.
T Consensus 214 ~~i~--~~t~~~ 223 (458)
T PRK09029 214 QALA--GCTHAS 223 (458)
T ss_pred HHHh--hceeee
Confidence 7774 566543
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.1e-17 Score=144.87 Aligned_cols=163 Identities=15% Similarity=0.102 Sum_probs=104.7
Q ss_pred ccchhhhhhccCCCCCCCCCCCCCCCCCCCCcEEEEeecCc------ccHHHHHhc---CCCcchhhhhhhhccCCCCCe
Q psy13808 23 ERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALRMGT------FRLSDIMQG---AGPEYHRRREQISKSLNCRDG 93 (190)
Q Consensus 23 ~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~ 93 (190)
.+++.+++++++++++|++++.+.... .....++++..+. ......... .................++|+
T Consensus 530 ~~~l~~il~~s~~~~li~~~~~~~~~~-~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~ 608 (994)
T PRK07868 530 DTDLAAAVRLGGVTEIITDPTNLEAAR-QLPGRVLVLGGGESRDLDLPDDADVIDMEKIDPDAVELPGWYRPNPGLARDL 608 (994)
T ss_pred chhHHHHHhccCCeEEEEChHHHHHHH-hcCceEEEecCCccccccCCcchhhhhhhhcCcccccCCcccCCCCCCCCcc
Confidence 478999999999999999866332111 0113333331110 000011100 000000000000112236899
Q ss_pred EEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChHH
Q psy13808 94 INIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMD 173 (190)
Q Consensus 94 ~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~ 173 (190)
++|+|| ||||.||++.++|.+...........+++.+ +|++++.+|++|.+++...++.++..|+++++. ++++++.
T Consensus 609 a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~-~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~-~~~~~~~ 685 (994)
T PRK07868 609 AFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDR-RDTVYCLTPLHHESGLLVSLGGAVVGGSRIALS-RGLDPDR 685 (994)
T ss_pred EEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCC-CCeEEEecChHHHhHHHHHHHHHhccceEEEec-CCCCHHH
Confidence 999999 5888888888888776654444455667777 999999999999999766566666667777666 6899999
Q ss_pred HHHHHHHCCceEEecc
Q psy13808 174 SLRAIAKEKCMEYLTK 189 (190)
Q Consensus 174 ~~~~i~~~~iT~l~~t 189 (190)
+++.|++|+||+++++
T Consensus 686 ~~~~I~~~~vT~~~~~ 701 (994)
T PRK07868 686 FVQEVRQYGVTVVSYT 701 (994)
T ss_pred HHHHHHHhCCcEEEeH
Confidence 9999999999999764
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.2e-16 Score=126.57 Aligned_cols=97 Identities=19% Similarity=0.166 Sum_probs=80.9
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCC-CcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCC
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKT-DHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAP 167 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~-~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~ 167 (190)
..++.++++|||||||.||||+++|+++.+........+++... .+++++.+|++|.+|+.+.++.++..|+++++. +
T Consensus 93 ~~~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~-~ 171 (386)
T TIGR02372 93 STPTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQL-A 171 (386)
T ss_pred CCCCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEec-C
Confidence 33568899999999999999999999999888777776666541 468999999999999877788899999999998 6
Q ss_pred CCChHHHHHHHHHCCceEEec
Q psy13808 168 SFKPMDSLRAIAKEKCMEYLT 188 (190)
Q Consensus 168 ~~~~~~~~~~i~~~~iT~l~~ 188 (190)
++++..+++.++.+ |++++
T Consensus 172 ~~~~~~~l~~i~~~--t~~~~ 190 (386)
T TIGR02372 172 AAPASGIMRHARPG--DLIVG 190 (386)
T ss_pred CCChHHHHHhhccC--CEEEE
Confidence 79999999988765 55543
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.7e-17 Score=127.43 Aligned_cols=164 Identities=17% Similarity=0.128 Sum_probs=130.4
Q ss_pred CCCCCccchhhhhhccCCCCCCCCCCCC----------CCCCCCCCcEEEEeecCc-c-cHHHHHhcCCCcchhhhhhhh
Q psy13808 18 SQPFRERTLSHQDKIRPGRESNPRPSAY----------KADALPTKLTRLALRMGT-F-RLSDIMQGAGPEYHRRREQIS 85 (190)
Q Consensus 18 ~p~~~~~~l~~~l~~~~~~~i~~~~~~~----------~~~~~~~~~~~i~~~~~~-~-~~~~l~~~~~~~~~~~~~~~~ 85 (190)
-|.++..||.+..+.+.|+.++.+.... ...+.+.++++++..+.. . ..+..+........ +.
T Consensus 109 LpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~~~~~~~~~~~a~~~~-----~a 183 (542)
T COG1021 109 LPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHPSVLEAALCHPAGLFT-----PA 183 (542)
T ss_pred cchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCcchhhhhhhCccccCC-----cC
Confidence 5788999999999999999999888711 134567788877762222 1 12222222221111 12
Q ss_pred ccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHH-HHHHHHHhCCEEEE
Q psy13808 86 KSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAM-GILNAMNHGSTTVV 164 (190)
Q Consensus 86 ~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~-~~~~~l~~G~~vv~ 164 (190)
...+++++++++-+.||||.||.+..+|..+..+.......++++. .+++||.+|..|.+.+.+ +.++.++.|+++|+
T Consensus 184 ~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~-~tvyL~~LP~AHNfplssPG~LGv~~agG~VVl 262 (542)
T COG1021 184 PPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQ-QTVYLCALPAAHNFPLSSPGALGVFLAGGTVVL 262 (542)
T ss_pred CCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCc-cceEEEecccccCCCCCCcchhheeeeccEEEE
Confidence 3457788999999999999999999999999999999999999998 999999999999988653 78899999999999
Q ss_pred cCCCCChHHHHHHHHHCCceEEec
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLT 188 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~ 188 (190)
. ++.+|+..+.+|++|+||+...
T Consensus 263 a-~~psp~~~F~lIerh~Vt~tAL 285 (542)
T COG1021 263 A-PDPSPELCFPLIERHGVTVTAL 285 (542)
T ss_pred C-CCCCHHHHHHHHHHhccceEEe
Confidence 8 8899999999999999998754
|
|
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.5e-15 Score=117.35 Aligned_cols=92 Identities=30% Similarity=0.351 Sum_probs=77.0
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE--c
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV--P 165 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~--~ 165 (190)
..++|+++|+|||||||.||||+++|+++..+.......+ .. .++++..+|++|..|+.. ++.++..|++.++ .
T Consensus 32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~-~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~v~~~~ 107 (358)
T PRK07824 32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GG-PGQWLLALPAHHIAGLQV-LVRSVIAGSEPVELDV 107 (358)
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CC-CCeEEEECChHHHHHHHH-HHHHHHcCCeEEecCc
Confidence 3568999999999999999999999999988776554433 33 678999999999999654 6788899999888 3
Q ss_pred CCCCChHHHHHHHHHCCc
Q psy13808 166 APSFKPMDSLRAIAKEKC 183 (190)
Q Consensus 166 ~~~~~~~~~~~~i~~~~i 183 (190)
+..+++..+++.+++++.
T Consensus 108 ~~~~~~~~~~~~i~~~~~ 125 (358)
T PRK07824 108 SAGFDPTALPRAVAELGG 125 (358)
T ss_pred CCCcCHHHHHHHHHHhCC
Confidence 356899999999999984
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.6e-14 Score=121.54 Aligned_cols=161 Identities=19% Similarity=0.175 Sum_probs=119.8
Q ss_pred ccccccCCCCCCccchhhhhhccCCCCCCCCCCCCC-CCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCC
Q psy13808 11 KEDRIGESQPFRERTLSHQDKIRPGRESNPRPSAYK-ADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLN 89 (190)
Q Consensus 11 ~~~~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 89 (190)
.+-.||++|.++.+.+.+++++++++.++++..... ...++. +....... . .....+. .....
T Consensus 301 G~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~----~~~~~~~------~~~~~ 364 (642)
T COG1020 301 GAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGLPG----LALDDALS--E----IPDTDPI------PQALL 364 (642)
T ss_pred CCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccccCCc----cccccccc--c----CCccCcc------cccCC
Confidence 455689999999999999999999999999833111 111121 11100000 0 0000000 12346
Q ss_pred CCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCC--
Q psy13808 90 CRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAP-- 167 (190)
Q Consensus 90 ~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~-- 167 (190)
+++.+|++|||||||.||||+++|+++.+........+.+.. +|+++...++.+... .+.++.++..|+++++.++
T Consensus 365 ~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~-~d~~l~~~s~~fD~~-~~~~f~~l~~G~~l~~~~~~~ 442 (642)
T COG1020 365 GDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDA-DDRVLALASLSFDAS-VFEIFGALLEGARLVLAPALL 442 (642)
T ss_pred CCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCc-ccEEeecCCcccchh-HHHHHHHHhCCCEEEecCccc
Confidence 689999999999999999999999999997666766788887 889999999877665 7789999999999999854
Q ss_pred CCChHHHHHHHHHCCceEEecc
Q psy13808 168 SFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 168 ~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..+++.+.+.++++++|.+..+
T Consensus 443 ~~~~~~l~~~~~~~~vt~~~~~ 464 (642)
T COG1020 443 QVDPAALLELLEAQGITVLLLV 464 (642)
T ss_pred cCCHHHHHHHHHHcCCEEEEec
Confidence 3699999999999999998743
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.9e-13 Score=108.45 Aligned_cols=100 Identities=17% Similarity=0.033 Sum_probs=77.7
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHh---hhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFI---GKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~---~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
.++++++.++|||||||.||++.++|+++..+.... ...+++.+ +|++++..++.+..+.....+..+..|++++.
T Consensus 72 ~~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 150 (422)
T TIGR02155 72 VPREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRP-GDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVP 150 (422)
T ss_pred CChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCC-CcEEEEccCccccchhHHHHHHHHHcCcEEEe
Confidence 355678899999999999999999999987653322 23457777 89998877665544434445667889999998
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
. +..+++.+++.|+++++|+++++
T Consensus 151 ~-~~~~~~~~~~~i~~~~~t~l~~~ 174 (422)
T TIGR02155 151 I-SGGQTEKQVQLIQDFKPDIIMVT 174 (422)
T ss_pred c-CCCCHHHHHHHHHHHCCCEEEEc
Confidence 8 45678999999999999998764
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-11 Score=101.40 Aligned_cols=98 Identities=20% Similarity=0.223 Sum_probs=76.1
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhh---hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGK---RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
++.++++.+.|||||||.||++.++|.++..+...... ..++.+ +|+++...|+.+..+.....++++..|++++.
T Consensus 83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~-gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~ 161 (445)
T TIGR03335 83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTA-GDRMVICASYGMNVGANTMTLAAREVGMSIIP 161 (445)
T ss_pred CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCC-CCeEEEEecCCcchhHHHHHHHHHHcCCEEEc
Confidence 45678899999999999999999999998876544433 347777 89999999988876654445667888988765
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
. + .....++.|+++++|.+.++
T Consensus 162 ~-~--~~~~~~~~i~~~~~t~l~~~ 183 (445)
T TIGR03335 162 E-G--KCTFPIRIIESYRPTGIVAS 183 (445)
T ss_pred C-C--chhHHHHHHHHhCCCEEEEC
Confidence 4 3 23567899999999998753
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.3e-06 Score=66.99 Aligned_cols=101 Identities=17% Similarity=0.081 Sum_probs=71.7
Q ss_pred cCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhc---CCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEE
Q psy13808 87 SLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRL---EFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTV 163 (190)
Q Consensus 87 ~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~---~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv 163 (190)
.+.-++...|--||||||+|+-+.++...+..+....++.+ +... +|++....-+.-..|......++...|++++
T Consensus 86 ~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~-gd~v~~~~~yGl~tgg~~~~~ga~rig~~vi 164 (438)
T COG1541 86 AVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRK-GDKVQNAYGYGLFTGGLGLHYGAERIGATVI 164 (438)
T ss_pred cccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCC-CCEEEEEeeeccccCCchhHHHHHhhCEEEE
Confidence 45556777799999999999999999998887776555443 5555 6665544443222222222455666788777
Q ss_pred EcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 164 VPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
-. ..-+-+.-+++++.+++|++.+|
T Consensus 165 p~-~~g~~~~~~~l~~df~~tvI~~t 189 (438)
T COG1541 165 PI-SGGNTERQLELMKDFKPTVIAAT 189 (438)
T ss_pred cc-CCccHHHHHHHHHhcCCcEEEEC
Confidence 66 34688999999999999999876
|
|
| >KOG1178|consensus | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.7e-05 Score=70.63 Aligned_cols=100 Identities=18% Similarity=0.143 Sum_probs=69.1
Q ss_pred cCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCc--hhHHHHHHHHHHHHHhCCEEEE
Q psy13808 87 SLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPM--FHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 87 ~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl--~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..-++..+++.||||+||.||+|.-+|..+.+...+....+..+. .+++ ...+. ++..- ...+.+.+..|+.+..
T Consensus 192 ~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~-s~~~-~~~~~~~~~d~i-~~~~~~~L~~~~~l~~ 268 (1032)
T KOG1178|consen 192 VGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTG-SDRF-TFKTSVYFDDTI-QKFIGALLFNGNNLLV 268 (1032)
T ss_pred eecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCc-cchh-hhhheeecccch-HHHHhhHhhcCceeec
Confidence 456678899999999999999999999999998887777666665 5553 22222 23222 2223444455554554
Q ss_pred cCCC--CChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPS--FKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~--~~~~~~~~~i~~~~iT~l~~t 189 (190)
+... -.+.++.+.+++|+++..+.+
T Consensus 269 p~~~~~~~~~~l~~~le~y~i~~~~~~ 295 (1032)
T KOG1178|consen 269 PTATIKDTPGQLASTLERYGITVSHLL 295 (1032)
T ss_pred ccccCccchhhHHHHHHhhhheeeeec
Confidence 4222 237999999999999988754
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.059 Score=44.59 Aligned_cols=90 Identities=11% Similarity=0.037 Sum_probs=51.7
Q ss_pred eEEEEecCCCCCCCceeEechHHHHHHHHH-hhh--hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCE-EEEcCCC
Q psy13808 93 GINIQFTSGTTGHPKAAFLTHYNLINNSNF-IGK--RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGST-TVVPAPS 168 (190)
Q Consensus 93 ~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~-~~~--~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~-vv~~~~~ 168 (190)
-..+..||||||.|-.+.++......+... ... ..++.. ++++...+ +..+..+ ..+..... +-..+-.
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~-g~r~a~~~---~~~~~ly---~~~~~~~~~~~~~~l~ 173 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFA-KHRIAFFL---RADNNLY---QSVNNRWISLDFFDLL 173 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCcccccc-CCcEEEEE---ccChhHH---HHHHhccceeeecCCC
Confidence 456778999999999999999865433221 122 224444 44444332 1111122 22222211 2222112
Q ss_pred CChHHHHHHHHHCCceEEecc
Q psy13808 169 FKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 169 ~~~~~~~~~i~~~~iT~l~~t 189 (190)
-+.+..++.|++++++++.+.
T Consensus 174 ~~~~~~l~~L~~~~P~~L~g~ 194 (430)
T TIGR02304 174 APFQAHIKRLNQRKPSIIVAP 194 (430)
T ss_pred cCHHHHHHHHHHhCCCEEEEc
Confidence 578899999999999999763
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >KOG3628|consensus | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.058 Score=48.77 Aligned_cols=102 Identities=18% Similarity=0.158 Sum_probs=82.0
Q ss_pred ccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEc
Q psy13808 86 KSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVP 165 (190)
Q Consensus 86 ~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~ 165 (190)
....++.+|++=|.--++|+--|+..+|.++.+.+......+.+.+ ...++...+.+-..|+....+...+.|.+.++.
T Consensus 938 g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~-~rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li 1016 (1363)
T KOG3628|consen 938 GLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYK-SRPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLI 1016 (1363)
T ss_pred cccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHcccc-CCceEEEecCccchhHHHHHHHHHHcCCceeec
Confidence 3456688999988877999999999999999999998888888887 555666666666677776688889999998887
Q ss_pred CCC---CChHHHHHHHHHCCceEEec
Q psy13808 166 APS---FKPMDSLRAIAKEKCMEYLT 188 (190)
Q Consensus 166 ~~~---~~~~~~~~~i~~~~iT~l~~ 188 (190)
++- -+|..++..|++|+|.-.+.
T Consensus 1017 ~p~~l~nnpsLll~~i~~~kvkDt~~ 1042 (1363)
T KOG3628|consen 1017 SPMDLENNPSLLLQIISQYKVKDTYP 1042 (1363)
T ss_pred CHHHhhcCHHHHHHHHhcccccccch
Confidence 542 48899999999999875543
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=93.79 E-value=1 Score=36.47 Aligned_cols=91 Identities=14% Similarity=0.122 Sum_probs=67.1
Q ss_pred cCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhh---hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEE
Q psy13808 87 SLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGK---RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTV 163 (190)
Q Consensus 87 ~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv 163 (190)
...|+.++++. =....+|...+...+...+. .+++.. ++++....|-.-. ++..+++.+..|+..+
T Consensus 6 ~~~pd~~a~~~--------~~~~~~Ty~~l~~~v~~la~~L~~~g~~~-~~~V~i~~~n~~~--~~~~~~A~~~~G~~~v 74 (417)
T PF00501_consen 6 QRYPDRIALID--------DEGRSLTYKQLYERVRKLAAALRKLGVKK-GDRVAILLPNSIE--FVVAFLACLRAGAIPV 74 (417)
T ss_dssp HHSTTSEEEEE--------TTTEEEEHHHHHHHHHHHHHHHHHTTSST-TSEEEEEESSSHH--HHHHHHHHHHTT-EEE
T ss_pred hhCCCceEEEE--------CCCEEEEHHHHHHHHHHHhhHHHHhCCCc-cccccccCCccce--eeeeeccccccccccc
Confidence 34778888766 23456888888776655443 446766 7877777665433 3445788999999999
Q ss_pred EcCCCCChHHHHHHHHHCCceEEec
Q psy13808 164 VPAPSFKPMDSLRAIAKEKCMEYLT 188 (190)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~iT~l~~ 188 (190)
..++....+.+.+.+++.++.+++.
T Consensus 75 ~l~~~~~~~~~~~~l~~~~~~~ii~ 99 (417)
T PF00501_consen 75 PLDPSLSEDELRHILRQSGPKVIIT 99 (417)
T ss_dssp EEETTSSHHHHHHHHHHHTESEEEE
T ss_pred ccccccccccccccccccceeEEEE
Confidence 9988899999999999999999984
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >KOG3628|consensus | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.13 Score=46.68 Aligned_cols=94 Identities=18% Similarity=0.172 Sum_probs=73.8
Q ss_pred eEEEEecCCCCCCCceeEechHHHHHHHHH---------------h-----hhhcCCcCCCcEEEEeCCchhHHHHHHHH
Q psy13808 93 GINIQFTSGTTGHPKAAFLTHYNLINNSNF---------------I-----GKRLEFDKTDHKILLQVPMFHTFGTAMGI 152 (190)
Q Consensus 93 ~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~---------------~-----~~~~~~~~~~~~~l~~~pl~h~~g~~~~~ 152 (190)
..+|-||++.+|.--|++.+|+ +....+. + ...++... ++..+......-..|+++++
T Consensus 252 ~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~s~~lGlilGV 329 (1363)
T KOG3628|consen 252 YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPS-EDVLLTNLDPSQQLGLILGV 329 (1363)
T ss_pred eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCc-ccceeeccCcccccchhhhh
Confidence 7899999999999999999997 3221111 1 12223344 78888888888899999999
Q ss_pred HHHHHhCCEEEEcCCC--CChHHHHHHHHHCCceEEec
Q psy13808 153 LNAMNHGSTTVVPAPS--FKPMDSLRAIAKEKCMEYLT 188 (190)
Q Consensus 153 ~~~l~~G~~vv~~~~~--~~~~~~~~~i~~~~iT~l~~ 188 (190)
+.++..|.|.+.+++. +.|..+...+-+||++++..
T Consensus 330 ~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~lt 367 (1363)
T KOG3628|consen 330 LVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLT 367 (1363)
T ss_pred hhhhhcCceeecCchhhcCCCcchhhhhccceeEEEee
Confidence 9999999999999443 68889999999999998764
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=93.23 E-value=2.9 Score=37.20 Aligned_cols=98 Identities=21% Similarity=0.229 Sum_probs=71.3
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhh---hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEc
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGK---RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVP 165 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~ 165 (190)
.++.++++.-..+..|.+ ...+|.+.+......++. ..++.+ +|++...+|-.--+ +..+++++..|+..+..
T Consensus 188 ~pd~~Ai~~~~e~~~~~~-~~~~Ty~eL~~~v~~lA~~L~~~Gv~~-GdrVai~~pn~~e~--via~LA~~~~Gav~vpi 263 (728)
T PLN03052 188 TDDSIAIIWRDEGSDDLP-VNRMTLSELRSQVSRVANALDALGFEK-GDAIAIDMPMNVHA--VIIYLAIILAGCVVVSI 263 (728)
T ss_pred CCCCeEEEEECCCCCCCc-eEEeeHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEeCCCHHH--HHHHHHHHHcCCEEEee
Confidence 467777654333222222 245788888766655544 347776 99999999865443 44578899999999998
Q ss_pred CCCCChHHHHHHHHHCCceEEeccC
Q psy13808 166 APSFKPMDSLRAIAKEKCMEYLTKD 190 (190)
Q Consensus 166 ~~~~~~~~~~~~i~~~~iT~l~~t~ 190 (190)
.+.+.++.+...+++-++.++++.|
T Consensus 264 ~p~~~~~~l~~rl~~~~~k~lit~d 288 (728)
T PLN03052 264 ADSFAPSEIATRLKISKAKAIFTQD 288 (728)
T ss_pred CCCCCHHHHHHHHHhcCceEEEEcC
Confidence 8899999999999999999988765
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.23 E-value=2.5 Score=36.70 Aligned_cols=97 Identities=15% Similarity=0.110 Sum_probs=71.4
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..|+.++++.... . ......+|.+.+......++.. .++.+ +|++...+|-.-. .+..+++.+..|+..+.
T Consensus 79 ~~p~~~Al~~~~~-~--~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~-gd~V~i~~~n~~e--~~~~~lA~~~~Gav~v~ 152 (637)
T PRK00174 79 TRGDKVAIIWEGD-D--PGDSRKITYRELHREVCRFANALKSLGVKK-GDRVAIYMPMIPE--AAVAMLACARIGAVHSV 152 (637)
T ss_pred cCCCCeEEEEECC-C--CCceEEEEHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEcCCCHH--HHHHHHHHHHcCCEEEe
Confidence 3577887664221 1 1134568999988776655544 36766 8999888886544 34457889999999999
Q ss_pred cCCCCChHHHHHHHHHCCceEEeccC
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTKD 190 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t~ 190 (190)
..+.+.++.+...+++.++..++..|
T Consensus 153 l~~~~~~~~l~~~l~~~~~~~li~~~ 178 (637)
T PRK00174 153 VFGGFSAEALADRIIDAGAKLVITAD 178 (637)
T ss_pred cCCCCCHHHHHHHHHhcCCcEEEEcC
Confidence 88889999999999999999988654
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=93.05 E-value=2.8 Score=36.20 Aligned_cols=97 Identities=16% Similarity=0.132 Sum_probs=71.0
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhh---hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGK---RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..|+.++++.... .+| ..-.+|.+.+......++. ..++.+ +|++...+|-.-.. +..+++.+..|+..+.
T Consensus 69 ~~p~~~Al~~~~~-~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~-gd~V~i~~~n~~e~--~~~~lA~~~~Gav~v~ 142 (625)
T TIGR02188 69 ARPDKVAIIWEGD-EPG--EVRKITYRELHREVCRFANVLKSLGVKK-GDRVAIYMPMIPEA--AIAMLACARIGAIHSV 142 (625)
T ss_pred cCCCCeEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHHHcCCCC-CCEEEEECCCCHHH--HHHHHHHHHhCCEEec
Confidence 3667777664322 122 2456888888776655544 347776 89999888865443 4457889999999998
Q ss_pred cCCCCChHHHHHHHHHCCceEEeccC
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTKD 190 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t~ 190 (190)
..+.+.++.+...++..++..+++.|
T Consensus 143 i~~~~~~~~l~~~l~~~~~~~li~~~ 168 (625)
T TIGR02188 143 VFGGFSAEALADRINDAGAKLVITAD 168 (625)
T ss_pred cCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 87889999999999999999988754
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.70 E-value=3.7 Score=35.88 Aligned_cols=96 Identities=16% Similarity=0.122 Sum_probs=70.4
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhh---hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEc
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGK---RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVP 165 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~ 165 (190)
.++.++++.-.-+ .+ ....+|.+.+......++. ..++.+ +|++...+|-.--. +..+++++..|+..+..
T Consensus 74 ~~~~~A~~~~~~~-~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~-GDrV~i~~~n~~e~--~~~~lA~~~~Gav~vpl 147 (647)
T PTZ00237 74 KRDQDALIYECPY-LK--KTIKLTYYQLYEKVCEFSRVLLNLNISK-NDNVLIYMANTLEP--LIAMLSCARIGATHCVL 147 (647)
T ss_pred CCCceEEEEEcCC-CC--ceEEEEHHHHHHHHHHHHHHHHHcCCCC-CCEEEEECCCCHHH--HHHHHHHHHhCcEEEee
Confidence 3566665442221 11 2356899988876665554 347877 99999999876543 44478899999999888
Q ss_pred CCCCChHHHHHHHHHCCceEEeccC
Q psy13808 166 APSFKPMDSLRAIAKEKCMEYLTKD 190 (190)
Q Consensus 166 ~~~~~~~~~~~~i~~~~iT~l~~t~ 190 (190)
.+.+.++.+...+++.++.+++..|
T Consensus 148 ~~~~~~~~l~~~l~~~~~~~li~~~ 172 (647)
T PTZ00237 148 FDGYSVKSLIDRIETITPKLIITTN 172 (647)
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEcc
Confidence 7899999999999999999988753
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.53 E-value=2.7 Score=35.60 Aligned_cols=97 Identities=12% Similarity=0.069 Sum_probs=68.2
Q ss_pred CCCCeEEEEecCCCC-CCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 89 NCRDGINIQFTSGTT-GHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 89 ~~~~~~~i~~TSGTT-G~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
.|+.++++....++. +..+-..+|.+.+.......+.. .++.+ +|++...++-...+ +..+++.+..|+..+.
T Consensus 19 ~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~-gd~V~~~~~n~~~~--~~~~la~~~~G~~~v~ 95 (552)
T PRK09274 19 RPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGR-GMRAVLMVTPSLEF--FALTFALFKAGAVPVL 95 (552)
T ss_pred CCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEeCCcHHH--HHHHHHHHHcCeEEEE
Confidence 567777654333221 22233368888887766555443 46776 89988888765443 4447889999999998
Q ss_pred cCCCCChHHHHHHHHHCCceEEec
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLT 188 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~ 188 (190)
..+.+..+++...+++.++..++.
T Consensus 96 l~~~~~~~~l~~~l~~~~~~~~i~ 119 (552)
T PRK09274 96 VDPGMGIKNLKQCLAEAQPDAFIG 119 (552)
T ss_pred cCCCccHHHHHHHHHhcCCCEEEe
Confidence 877889999999999999988765
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.43 E-value=4 Score=35.58 Aligned_cols=95 Identities=13% Similarity=0.093 Sum_probs=69.4
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEc
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVP 165 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~ 165 (190)
.++.++++.... .| ....+|.+.+......++.. .++.+ +|++...+|-.-.. +..+++.+..|+..+..
T Consensus 97 ~~~~~Al~~~~~--~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~-gd~V~i~~~n~~e~--v~~~lA~~~~Gav~v~l 169 (655)
T PRK03584 97 RDDRPAIIFRGE--DG--PRRELSWAELRRQVAALAAALRALGVGP-GDRVAAYLPNIPET--VVAMLATASLGAIWSSC 169 (655)
T ss_pred CCCCeEEEEECC--CC--ceEEEeHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEcCCCHHH--HHHHHHHHHcCcEEEee
Confidence 456777654322 12 13468888888766555443 46776 89999988865443 44478999999999988
Q ss_pred CCCCChHHHHHHHHHCCceEEeccC
Q psy13808 166 APSFKPMDSLRAIAKEKCMEYLTKD 190 (190)
Q Consensus 166 ~~~~~~~~~~~~i~~~~iT~l~~t~ 190 (190)
.+.+.++.+...++..++..+++.|
T Consensus 170 ~~~~~~~~l~~~l~~~~~~~li~~~ 194 (655)
T PRK03584 170 SPDFGVQGVLDRFGQIEPKVLIAVD 194 (655)
T ss_pred CCCCCHHHHHHHHHHcCCcEEEEcc
Confidence 7889999999999999999887654
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=92.39 E-value=4.3 Score=35.60 Aligned_cols=96 Identities=17% Similarity=0.190 Sum_probs=70.4
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhh---hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEc
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGK---RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVP 165 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~ 165 (190)
.++.++++ +...-.| ....+|.+.+......++. ..++.+ +|++...+|-.-- .+..+++++..|+..+..
T Consensus 102 ~~~~~Al~-~~~~~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~-GdrV~i~~pn~~e--~v~a~lA~~~~Gav~vpv 175 (666)
T PLN02654 102 NGDKIAIY-WEGNEPG--FDASLTYSELLDRVCQLANYLKDVGVKK-GDAVVIYLPMLME--LPIAMLACARIGAVHSVV 175 (666)
T ss_pred CCCCEEEE-EEcCCCC--ceEEEeHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEcCCCHH--HHHHHHHHHHcCCEEEec
Confidence 46777755 4221111 2356899888876665554 347776 9999988886544 345578899999999988
Q ss_pred CCCCChHHHHHHHHHCCceEEeccC
Q psy13808 166 APSFKPMDSLRAIAKEKCMEYLTKD 190 (190)
Q Consensus 166 ~~~~~~~~~~~~i~~~~iT~l~~t~ 190 (190)
.+.+.++.+...++..++..+++.|
T Consensus 176 ~~~~~~~~l~~~l~~~~~~~li~~~ 200 (666)
T PLN02654 176 FAGFSAESLAQRIVDCKPKVVITCN 200 (666)
T ss_pred CCCCCHHHHHHHHHhcCceEEEEcC
Confidence 8899999999999999999988754
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=92.02 E-value=5.1 Score=34.76 Aligned_cols=96 Identities=18% Similarity=0.212 Sum_probs=70.1
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEc
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVP 165 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~ 165 (190)
.|+.++++. -+..+|. .-.+|.+.+......++.. .++.+ +|++...+|-.-- .+..+++.+..|+..+..
T Consensus 65 ~p~~~Al~~-~~~~~~~--~~~~Ty~eL~~~v~~lA~~L~~~Gv~~-Gd~V~i~~~n~~e--~v~~~lA~~~~Gav~vpl 138 (628)
T TIGR02316 65 RGEQLALVT-VSSETGQ--ERTLTYRQLHREVNVFASALRALGVGR-GDRVLIYMPMIAE--AVFAMLACARIGAIHSVV 138 (628)
T ss_pred CCCCeEEEE-EcCCCCc--eEEEeHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEcCCCHH--HHHHHHHHHHhCCEEEec
Confidence 567777554 3222232 2458888887766555443 47777 9999998886543 345578899999999888
Q ss_pred CCCCChHHHHHHHHHCCceEEeccC
Q psy13808 166 APSFKPMDSLRAIAKEKCMEYLTKD 190 (190)
Q Consensus 166 ~~~~~~~~~~~~i~~~~iT~l~~t~ 190 (190)
.+.+.++.+...++..++..++..|
T Consensus 139 ~~~~~~~~l~~~l~~~~~~~li~~~ 163 (628)
T TIGR02316 139 FGGFASHSLALRIDDATPKLIVSAD 163 (628)
T ss_pred CCCCCHHHHHHHHHhcCceEEEECC
Confidence 7889999999999999999888754
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=91.46 E-value=4.7 Score=34.18 Aligned_cols=96 Identities=11% Similarity=0.067 Sum_probs=69.4
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..|+.++++..-. +.++.-.+|...+......++.. .++.+ ++++...+|-.... ...+++.+..|+..+.
T Consensus 36 ~~p~~~A~~~~~~---~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~-g~~Val~~~n~~e~--~~~~la~~~~G~~~vp 109 (547)
T PRK13295 36 SCPDKTAVTAVRL---GTGAPRRFTYRELAALVDRVAVGLARLGVGR-GDVVSCQLPNWWEF--TVLYLACSRIGAVLNP 109 (547)
T ss_pred HCCCceEEEecCC---CccccceeeHHHHHHHHHHHHHHHHHhCCCC-CCEEEEECCCChHH--HHHHHHHHhcCcEEec
Confidence 3567777654332 23344578888887766555443 47776 88888887755443 4447889999999998
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..+....+.+...++..++..++..
T Consensus 110 l~~~~~~~~l~~~l~~~~~~~li~~ 134 (547)
T PRK13295 110 LMPIFRERELSFMLKHAESKVLVVP 134 (547)
T ss_pred cccccCHHHHHHHHHhcCceEEEEe
Confidence 8788899999999999999988754
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=91.43 E-value=5.9 Score=34.64 Aligned_cols=94 Identities=14% Similarity=0.101 Sum_probs=69.0
Q ss_pred CCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcC
Q psy13808 90 CRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPA 166 (190)
Q Consensus 90 ~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~ 166 (190)
+++++++.... +|. ...+|.+.+......++.. .++.+ +|++...+|-.--. +..+++++..|+..+...
T Consensus 98 ~~~~a~~~~~~--~~~--~~~~Ty~eL~~~v~~lA~~L~~~Gv~~-GdrV~i~~~n~~e~--~~~~lA~~~~Gav~vp~~ 170 (652)
T TIGR01217 98 GTEPALLYVDE--THE--PAPVTWAELRRQVASLAAALRALGVRP-GDRVSGYLPNIPQA--VVAMLATASVGAIWSSCS 170 (652)
T ss_pred CCCeEEEEECC--CCC--eeEEeHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEcCCCHHH--HHHHHHHHHhCeEEEecC
Confidence 45666544322 222 2458888888766655543 47776 99999999876443 444788999999999888
Q ss_pred CCCChHHHHHHHHHCCceEEeccC
Q psy13808 167 PSFKPMDSLRAIAKEKCMEYLTKD 190 (190)
Q Consensus 167 ~~~~~~~~~~~i~~~~iT~l~~t~ 190 (190)
+.+.++.+...+++.++..+++.|
T Consensus 171 ~~~~~~~l~~~l~~~~~k~li~~~ 194 (652)
T TIGR01217 171 PDFGARGVLDRFQQIEPKLLFTVD 194 (652)
T ss_pred CCCCHHHHHHHHHhcCCcEEEEcc
Confidence 889999999999999999888654
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=91.05 E-value=4.3 Score=34.39 Aligned_cols=92 Identities=10% Similarity=0.022 Sum_probs=67.7
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..|+.++++.. .| ...+|.+.+.......+.. .++.+ ++++...++-.... +..+++.+..|+..+.
T Consensus 26 ~~p~~~a~~~~-~~------~~~~Ty~el~~~~~~~a~~L~~~g~~~-g~~V~i~~~~~~e~--~~~~lA~~~~G~v~v~ 95 (540)
T PRK05857 26 QQPEAIALRRC-DG------TSALRYRELVAEVGGLAADLRAQSVSR-GSRVLVISDNGPET--YLSVLACAKLGAIAVM 95 (540)
T ss_pred hCCCcEEEeec-CC------CceeeHHHHHHHHHHHHHHHHHhCcCC-CCEEEEEcCCCHHH--HHHHHHHHHcCeEEEe
Confidence 46777776533 22 1358998888776665543 36666 88888888766553 4447889999999999
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.++.+.++++.+.++..++..++..
T Consensus 96 l~~~~~~~~l~~~~~~~~~~~ii~~ 120 (540)
T PRK05857 96 ADGNLPIAAIERFCQITDPAAALVA 120 (540)
T ss_pred cCccCCHHHHHHHHHhcCCceEEEe
Confidence 8788999999999999988877654
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=90.64 E-value=6.4 Score=32.69 Aligned_cols=91 Identities=8% Similarity=-0.083 Sum_probs=66.3
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhh---hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEc
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGK---RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVP 165 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~ 165 (190)
.|+.++++....| ..+|...+.......+. ..++.. ++++...++-.... +..+++.+..|+..+..
T Consensus 8 ~p~~~a~~~~~~~-------~~~ty~~l~~~v~~~a~~l~~~g~~~-~~~v~i~~~~~~~~--~~~~la~~~~G~~~v~~ 77 (488)
T PRK09088 8 QPQRLAAVDLALG-------RRWTYAELDALVGRLAAVLRRRGCVD-GERLAVLARNSVWL--VALHFACARVGAIYVPL 77 (488)
T ss_pred CCCceEEEecCCC-------cEEEHHHHHHHHHHHHHHHHHcCCCC-CCEEEEECCCCHHH--HHHHHHHHHcCeEEEee
Confidence 5666665433333 35788888766654443 346666 88888887766553 44478899999999988
Q ss_pred CCCCChHHHHHHHHHCCceEEecc
Q psy13808 166 APSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 166 ~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.+...++.+...+++.+++.++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ii~~ 101 (488)
T PRK09088 78 NWRLSASELDALLQDAEPRLLLGD 101 (488)
T ss_pred CccCCHHHHHHHHHhCCCCEEEEc
Confidence 788899999999999999988764
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=90.60 E-value=5.3 Score=33.84 Aligned_cols=91 Identities=11% Similarity=0.133 Sum_probs=66.2
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEc
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVP 165 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~ 165 (190)
.++.++++.... ...+|.+.+.......+.. .++.+ ++++....|-... ++..+++.+..|+..+..
T Consensus 29 ~~~~~ai~~~~~-------~~~~Ty~~l~~~~~~~a~~L~~~gi~~-g~~V~i~~~~~~~--~~~~~la~~~~G~~~v~l 98 (559)
T PRK08315 29 YPDREALVYRDQ-------GLRWTYREFNEEVDALAKGLLALGIEK-GDRVGIWAPNVPE--WVLTQFATAKIGAILVTI 98 (559)
T ss_pred CCCCeEEEEcCC-------CeEEcHHHHHHHHHHHHHHHHHcCCCC-CCEEEEECCCChH--HHHHHHHHHHhCeEEEec
Confidence 566666554322 2347998887766555443 36666 8888877775543 344578999999999988
Q ss_pred CCCCChHHHHHHHHHCCceEEecc
Q psy13808 166 APSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 166 ~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
++....+.+...+++.+++.++..
T Consensus 99 ~~~~~~~~~~~~l~~~~~~~ii~~ 122 (559)
T PRK08315 99 NPAYRLSELEYALNQSGCKALIAA 122 (559)
T ss_pred CccCCHHHHHHHHHhcCCCEEEEe
Confidence 788899999999999999988764
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=90.59 E-value=4.7 Score=34.12 Aligned_cols=91 Identities=13% Similarity=0.179 Sum_probs=67.1
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..|++++++. .. | ..+|.+.+.......+.. .++.+ +|++...+|-.-. ++..+++++..|+.++.
T Consensus 35 ~~pd~~a~~~-~~---~----~~~Ty~~l~~~v~~la~~l~~~G~~~-gd~V~i~~~n~~~--~~~~~lA~~~~G~~~v~ 103 (547)
T PRK06087 35 AMPDKIAVVD-NH---G----ASYTYSALDHAASRLANWLLAKGIEP-GDRVAFQLPGWCE--FTIIYLACLKVGAVSVP 103 (547)
T ss_pred HCCCceEEEc-CC---C----CEEEHHHHHHHHHHHHHHHHHcCCCC-CCEEEEECCCCHH--HHHHHHHHHHcCcEEec
Confidence 4677777653 22 2 357888887666555443 46776 8998888875543 34557899999999998
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..+.+..+++...++..++.+++..
T Consensus 104 l~~~~~~~~l~~~l~~~~~~~l~~~ 128 (547)
T PRK06087 104 LLPSWREAELVWVLNKCQAKMFFAP 128 (547)
T ss_pred cchhcCHHHHHHHHHhcCCeEEEEe
Confidence 8778899999999999999888764
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=90.52 E-value=4.8 Score=33.51 Aligned_cols=89 Identities=12% Similarity=0.101 Sum_probs=65.0
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEc
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVP 165 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~ 165 (190)
.|+.++++. . +-.+|...+.......+.. .++.+ ++++....|-.-. .+..+++.+..|+..+..
T Consensus 18 ~~~~~a~~~--~-------~~~~Ty~~l~~~~~~~a~~L~~~gv~~-g~~V~l~~~~~~~--~~~~~la~~~~G~~~v~l 85 (513)
T PRK07656 18 FGDKEAYVF--G-------DQRLTYAELNARVRRAAAALAALGIGK-GDRVAIWAPNSPH--WVIAALGALKAGAVVVPL 85 (513)
T ss_pred CCCCeEEEe--C-------CCceeHHHHHHHHHHHHHHHHHcCCCC-CCEEEEECCCChH--HHHHHHHHHhcCeEEEec
Confidence 566776654 1 2358888887766554433 46666 8888877775533 344578899999999988
Q ss_pred CCCCChHHHHHHHHHCCceEEecc
Q psy13808 166 APSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 166 ~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
++....+.+.+.+++.++..++..
T Consensus 86 ~~~~~~~~~~~~l~~~~~~~ii~~ 109 (513)
T PRK07656 86 NTRYTADEAAYILARGDAKALFVL 109 (513)
T ss_pred CcccCHHHHHHHHhhcCceEEEEc
Confidence 788899999999999999988764
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=90.18 E-value=4.9 Score=34.48 Aligned_cols=90 Identities=8% Similarity=-0.050 Sum_probs=66.8
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..|+.++++. .+ -.+|.+.+...+...+.. +++.+ +|++...+|-.- .+...+++.+..|+.++.
T Consensus 26 ~~p~~~Al~~--~~-------~~~Ty~eL~~~~~~~a~~L~~~Gl~~-gd~Vai~~~n~~--e~~~~~la~~~~G~~~vp 93 (579)
T PLN03102 26 CYPNRTSIIY--GK-------TRFTWPQTYDRCCRLAASLISLNITK-NDVVSVLAPNTP--AMYEMHFAVPMAGAVLNP 93 (579)
T ss_pred hCCCCeEEEE--CC-------cEEEHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEcCCcH--HHHHHHHHHHhcCcEEee
Confidence 3577777553 11 257888888766655543 47777 888888887433 334557889999999998
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..+.+.++.+...+++.++..++..
T Consensus 94 l~~~~~~~~l~~~l~~~~~~~ii~~ 118 (579)
T PLN03102 94 INTRLDATSIAAILRHAKPKILFVD 118 (579)
T ss_pred ccccCCHHHHHHHHhccCCeEEEEC
Confidence 8788999999999999999988753
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.00 E-value=8.1 Score=33.44 Aligned_cols=96 Identities=19% Similarity=0.201 Sum_probs=69.5
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhh---hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEc
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGK---RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVP 165 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~ 165 (190)
.|+.++++. -+..+|. .-.+|.+.+.......+. ..++.+ +|++...+|-.--. +..+++.+..|+..+..
T Consensus 66 ~p~~~A~~~-~~~~~~~--~~~~Ty~eL~~~v~~lA~~L~~~Gv~~-gd~V~i~~~n~~e~--~~~~lA~~~~Gav~v~~ 139 (629)
T PRK10524 66 RPEQLALIA-VSTETDE--ERTYTFRQLHDEVNRMAAMLRSLGVQR-GDRVLIYMPMIAEA--AFAMLACARIGAIHSVV 139 (629)
T ss_pred CCCCeEEEE-EcCCCCc--eEEEeHHHHHHHHHHHHHHHHHcCCCC-CCEEEEECCCCHHH--HHHHHHHHHhCcEEEee
Confidence 567777654 3322222 345788888766655443 347776 99999988865443 44478899999998888
Q ss_pred CCCCChHHHHHHHHHCCceEEeccC
Q psy13808 166 APSFKPMDSLRAIAKEKCMEYLTKD 190 (190)
Q Consensus 166 ~~~~~~~~~~~~i~~~~iT~l~~t~ 190 (190)
.+.+.++.+...++..++..++.+|
T Consensus 140 ~~~~~~~~l~~~l~~~~~~~li~~~ 164 (629)
T PRK10524 140 FGGFASHSLAARIDDAKPVLIVSAD 164 (629)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEEcc
Confidence 7889999999999999999988654
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=89.93 E-value=5.6 Score=33.60 Aligned_cols=91 Identities=14% Similarity=0.151 Sum_probs=65.5
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEc
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVP 165 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~ 165 (190)
.++.++++..- ++-.+|++.+.......+.. .++.+ +|++...++-.- .....+++.+..|+..+..
T Consensus 36 ~~~~~a~~~~~-------~~~~~ty~el~~~~~~la~~L~~~g~~~-gd~V~i~~~~~~--~~~~~~la~~~~G~~~v~l 105 (537)
T PLN02246 36 FSDRPCLIDGA-------TGRVYTYADVELLSRRVAAGLHKLGIRQ-GDVVMLLLPNCP--EFVLAFLGASRRGAVTTTA 105 (537)
T ss_pred CCCCeEEEecC-------CCceeeHHHHHHHHHHHHHHHHHhCCCC-CCEEEEECCCCh--HHHHHHHHHHHcCEEEecC
Confidence 56777755321 12368998887766555443 46766 888887776543 2344478889999999988
Q ss_pred CCCCChHHHHHHHHHCCceEEecc
Q psy13808 166 APSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 166 ~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.+.+..+++...+++.++..++..
T Consensus 106 ~~~~~~~~l~~~l~~~~~~~li~~ 129 (537)
T PLN02246 106 NPFYTPAEIAKQAKASGAKLIITQ 129 (537)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEEc
Confidence 788899999999999999987754
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=89.63 E-value=8.7 Score=32.50 Aligned_cols=92 Identities=10% Similarity=0.047 Sum_probs=66.4
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..|++++++..-. +..+|...+......++.. .++.+ ++++....|-.-. +...+++.+..|+..+.
T Consensus 30 ~~p~~~a~~~~~~-------~~~~Ty~~l~~~~~~~a~~L~~~gi~~-g~~V~i~~~~~~~--~~~~~~a~~~~G~~~v~ 99 (558)
T PRK12583 30 RFPDREALVVRHQ-------ALRYTWRQLADAVDRLARGLLALGVQP-GDRVGIWAPNCAE--WLLTQFATARIGAILVN 99 (558)
T ss_pred HCCCCeEEEecCC-------CcEecHHHHHHHHHHHHHHHHHhCCCC-CCEEEEECCCChH--HHHHHHHHHhhCCEEEe
Confidence 3567777654211 2357888887766555443 36666 8888777775543 34457889999999998
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..+.+.++++...+++.++..++..
T Consensus 100 l~~~~~~~~~~~~l~~~~~~~ii~~ 124 (558)
T PRK12583 100 INPAYRASELEYALGQSGVRWVICA 124 (558)
T ss_pred cCCCCCHHHHHHHHHhcCCcEEEEe
Confidence 8788999999999999999887654
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=89.56 E-value=9.1 Score=33.30 Aligned_cols=97 Identities=9% Similarity=0.047 Sum_probs=67.7
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..|+.++++.+..+.. ..+...+|.+.+......++.. .++.+ +|++...+|-... .+..+++.+..|. ++.
T Consensus 37 ~~p~~~Al~~~~~~~~-~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~-gd~V~i~~~n~~e--~~~~~lA~~~~Gi-~~p 111 (632)
T PRK07529 37 RHPDAPALSFLLDADP-LDRPETWTYAELLADVTRTANLLHSLGVGP-GDVVAFLLPNLPE--THFALWGGEAAGI-ANP 111 (632)
T ss_pred HCCCCceEEeecccCC-CCCCceeEHHHHHHHHHHHHHHHHHcCCCC-CCEEEEECCCCHH--HHHHHHHHHHhCE-EEe
Confidence 4678888766543321 1234568888887766555443 46776 8999988885544 3444677788884 455
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..+...++++...+++.++..++..
T Consensus 112 i~~~~~~~~i~~~l~~~~~~~li~~ 136 (632)
T PRK07529 112 INPLLEPEQIAELLRAAGAKVLVTL 136 (632)
T ss_pred CCCcCCHHHHHHHHHhcCCcEEEEe
Confidence 5577899999999999999988764
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=89.56 E-value=6.7 Score=33.28 Aligned_cols=89 Identities=10% Similarity=-0.013 Sum_probs=65.0
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCC-cCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEF-DKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~-~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
.|+.++++ +- +..+|...+.......+.. .++ .+ ++++...++-... .+..+++.+..|+..+.
T Consensus 14 ~p~~~Al~-~~--------~~~lTy~el~~~~~~la~~L~~~g~~~~-~~~V~i~~~n~~~--~v~~~lA~~~~Ga~~v~ 81 (540)
T PRK13388 14 GDDTIAVR-YG--------DRTWTWREVLAEAAARAAALIALADPDR-PLHVGVLLGNTPE--MLFWLAAAALGGYVLVG 81 (540)
T ss_pred cCCceEEE-EC--------CceeeHHHHHHHHHHHHHHHHHhcCCCC-CCEEEEECCCCcH--HHHHHHHHHhCCCEEEE
Confidence 46777754 31 2368888888766655543 356 45 7888877775444 34457889999999998
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.++.+..+++...+++.++..++..
T Consensus 82 l~p~~~~~~l~~~l~~~~~~~~i~~ 106 (540)
T PRK13388 82 LNTTRRGAALAADIRRADCQLLVTD 106 (540)
T ss_pred ecccCChHHHHHHHHhcCCCEEEEC
Confidence 8788899999999999999888764
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=89.48 E-value=4.1 Score=34.50 Aligned_cols=91 Identities=13% Similarity=0.093 Sum_probs=67.0
Q ss_pred cCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEE
Q psy13808 87 SLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTV 163 (190)
Q Consensus 87 ~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv 163 (190)
...|+.++++- . .-.+|.+.+......++.. .++.+ +|++...++-.-. ++..+++.+..|+..+
T Consensus 60 ~~~pd~~Al~~-~--------~~~~Ty~el~~~~~~la~~L~~~gi~~-gd~V~i~~~n~~~--~~~~~la~~~~G~~~v 127 (549)
T PRK07788 60 RRAPDRAALID-E--------RGTLTYAELDEQSNALARGLLALGVRA-GDGVAVLARNHRG--FVLALYAAGKVGARII 127 (549)
T ss_pred HHCCCceEEEE-C--------CCceeHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEcCCCHH--HHHHHHHHHhcCCEEE
Confidence 34677777652 1 1258888887766555443 36766 8888877764432 3455789999999999
Q ss_pred EcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 164 VPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..++.+..+++...+++.++..++..
T Consensus 128 ~l~~~~~~~~l~~~l~~~~~~~ii~~ 153 (549)
T PRK07788 128 LLNTGFSGPQLAEVAAREGVKALVYD 153 (549)
T ss_pred EeCCCCCHHHHHHHHHhcCCcEEEEC
Confidence 99888999999999999999988764
|
|
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=89.42 E-value=5.1 Score=32.56 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=23.6
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHH
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNS 120 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~ 120 (190)
..++++..++-||||||.|--+.+.+..+....
T Consensus 86 ~~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~ 118 (365)
T PF04443_consen 86 VPEEEVEKVFTSSGTTGQPSRIFRDRETAERQQ 118 (365)
T ss_pred cChhhheeEEECCCCCCCCcEEEECHHHHHHHH
Confidence 345677889999999999866666665555443
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=89.33 E-value=6.2 Score=37.65 Aligned_cols=98 Identities=12% Similarity=0.122 Sum_probs=69.3
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhc---CCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRL---EFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~---~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..|+.++++...+...+......+|.+.+.......+..+ +..+ ++++...++-... .+..+++.+..|+..+.
T Consensus 248 ~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~-g~~V~i~~~~~~~--~i~~~lA~l~~G~~~vp 324 (1389)
T TIGR03443 248 KHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKR-GDVVMIYAYRGVD--LVVAVMGVLKAGATFSV 324 (1389)
T ss_pred hCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCC-CCEEEEEecCCHH--HHHHHHHHHhhCcEEec
Confidence 4577777664322111111234689998887766655443 6666 8888888886544 34557899999999999
Q ss_pred cCCCCChHHHHHHHHHCCceEEec
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLT 188 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~ 188 (190)
.++.+.++++...++..++..++.
T Consensus 325 ldp~~p~~~~~~~l~~~~~~~li~ 348 (1389)
T TIGR03443 325 IDPAYPPARQTIYLSVAKPRALIV 348 (1389)
T ss_pred cCCCCcHHHHHHHHHhcCCCEEEE
Confidence 888889999999999999887764
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=88.80 E-value=7.1 Score=33.29 Aligned_cols=89 Identities=9% Similarity=0.010 Sum_probs=65.6
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEc
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVP 165 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~ 165 (190)
.|+.++++. -. -.+|.+.+.......+.. .++.+ +|++....|-.-. .+..+++.+..|+..+..
T Consensus 45 ~p~~~a~~~-~~--------~~~Ty~ql~~~~~~~A~~L~~~gi~~-gd~V~l~~~n~~~--~~~~~lA~~~~G~~~v~l 112 (573)
T PRK05605 45 FGDRPALDF-FG--------ATTTYAELGKQVRRAAAGLRALGVRP-GDRVAIVLPNCPQ--HIVAFYAVLRLGAVVVEH 112 (573)
T ss_pred CCCCeEEEe-CC--------CcccHHHHHHHHHHHHHHHHHhCCCC-CCEEEEECCCCHH--HHHHHHHHHhcCcEEeec
Confidence 567777554 21 147888887766555443 46666 8888887776544 345578899999999988
Q ss_pred CCCCChHHHHHHHHHCCceEEecc
Q psy13808 166 APSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 166 ~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.+.+.++.+.+.+++.++..++..
T Consensus 113 ~~~~~~~~l~~~l~~~~~~~ii~~ 136 (573)
T PRK05605 113 NPLYTAHELEHPFEDHGARVAIVW 136 (573)
T ss_pred CcCCCHHHHHHHHhccCCcEEEec
Confidence 788999999999999999988754
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=88.72 E-value=9.2 Score=31.73 Aligned_cols=90 Identities=9% Similarity=-0.009 Sum_probs=67.3
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh----cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR----LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTV 163 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~----~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv 163 (190)
..|+.++++. .+..+|...+.......+.. .++.+ ++++...++-... +...+++.+..|+..+
T Consensus 14 ~~p~~~a~~~---------~~~~~ty~~l~~~~~~la~~L~~~~g~~~-~~~V~i~~~~~~~--~~~~~la~~~~G~~~~ 81 (496)
T PRK06839 14 LHPDRIAIIT---------EEEEMTYKQLHEYVSKVAAYLIYELNVKK-GERIAILSQNSLE--YIVLLFAIAKVECIAV 81 (496)
T ss_pred HCCCCeEEEE---------CCceEEHHHHHHHHHHHHHHHHHhcCCCC-CCEEEEECCCCHH--HHHHHHHHHhcCcEEE
Confidence 4567777663 13578999888776665544 35666 8888887776544 3444788999999999
Q ss_pred EcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 164 VPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..++..+++.+...+++.+++.++..
T Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~i~~~ 107 (496)
T PRK06839 82 PLNIRLTENELIFQLKDSGTTVLFVE 107 (496)
T ss_pred ecCcccCHHHHHHHHHhcCceEEEEc
Confidence 88777899999999999999988754
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=88.61 E-value=9.1 Score=31.97 Aligned_cols=89 Identities=11% Similarity=-0.022 Sum_probs=64.4
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEc
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVP 165 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~ 165 (190)
.++.++++... ..+|...+.......+.. .++.+ ++++....|-... +...+++.+..|+..+..
T Consensus 24 ~~~~~a~~~~~---------~~~Ty~~l~~~~~~~a~~L~~~gi~~-~~~V~l~~~~~~~--~~~~~~a~~~~G~~~v~l 91 (523)
T PRK08316 24 YPDKTALVFGD---------RSWTYAELDAAVNRVAAALLDLGLKK-GDRVAALGHNSDA--YALLWLACARAGAVHVPV 91 (523)
T ss_pred CCCCeEEEECC---------ceeeHHHHHHHHHHHHHHHHHcCCCC-CCEEEEECCCCHH--HHHHHHHHHhcCcEEEec
Confidence 45666655321 457888877666544433 36666 7888877775554 244478899999999988
Q ss_pred CCCCChHHHHHHHHHCCceEEecc
Q psy13808 166 APSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 166 ~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.+.+..+.+...+++.++..++..
T Consensus 92 ~~~~~~~~i~~~l~~~~~~~ii~~ 115 (523)
T PRK08316 92 NFMLTGEELAYILDHSGARAFLVD 115 (523)
T ss_pred ccccCHHHHHHHHHhCCCCEEEEc
Confidence 778899999999999999988754
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=88.49 E-value=11 Score=31.27 Aligned_cols=79 Identities=11% Similarity=0.028 Sum_probs=59.8
Q ss_pred eeEechHHHHHHHHHhhh---hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCce
Q psy13808 108 AAFLTHYNLINNSNFIGK---RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCM 184 (190)
Q Consensus 108 gv~~sh~~~~~~~~~~~~---~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT 184 (190)
+..+|...+.......+. ..++.+ +|++....+-.-. ....+++.+..|+..+...+.+.++++...+++.++.
T Consensus 26 ~~~~Ty~eL~~~~~~la~~L~~~g~~~-gd~v~i~~~~~~e--~~v~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~ 102 (504)
T PRK07514 26 GLRYTYGDLDAASARLANLLVALGVKP-GDRVAVQVEKSPE--ALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPA 102 (504)
T ss_pred CCEEcHHHHHHHHHHHHHHHHHcCCCC-CCEEEEECCCCHH--HHHHHHHHHHcCcEEEECCCCCCHHHHHHHHHhCCCc
Confidence 346888887766555443 346776 8888777775533 3555788999999999887888999999999999999
Q ss_pred EEecc
Q psy13808 185 EYLTK 189 (190)
Q Consensus 185 ~l~~t 189 (190)
.++..
T Consensus 103 ~ii~~ 107 (504)
T PRK07514 103 LVVCD 107 (504)
T ss_pred EEEEc
Confidence 88764
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=88.49 E-value=9.7 Score=31.77 Aligned_cols=89 Identities=12% Similarity=0.056 Sum_probs=64.3
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEc
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVP 165 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~ 165 (190)
.|++++++... -.+|.+.+.......+.. .++.+ ++++...++-.... ...+++.+..|+..+..
T Consensus 13 ~p~~~a~~~~~---------~~~ty~~l~~~v~~~a~~l~~~g~~~-~~~V~i~~~n~~~~--~~~~lA~~~~G~~~v~l 80 (515)
T TIGR03098 13 LPDATALVHHD---------RTLTYAALSERVLALASGLRGLGLAR-GERVAIYLDKRLET--VTAMFGAALAGGVFVPI 80 (515)
T ss_pred CCCCeEEEECC---------ceeeHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEcCCCHHH--HHHHHHHHhcCEEEEeC
Confidence 56666654421 268888887665544433 35666 88888887765543 34478899999999988
Q ss_pred CCCCChHHHHHHHHHCCceEEecc
Q psy13808 166 APSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 166 ~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.+.+.++.+...+++.++..++..
T Consensus 81 ~~~~~~~~~~~~l~~~~~~~~i~~ 104 (515)
T TIGR03098 81 NPLLKAEQVAHILADCNVRLLVTS 104 (515)
T ss_pred CCCCCHHHHHHHHHcCCCeEEEEc
Confidence 778899999999999999988654
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=88.48 E-value=11 Score=31.67 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=67.6
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhh---hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGK---RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..|+.++++.-.. .|.. -.+|...+.......+. ..++.+ +|++....+-.... ...+++.+..|+..+.
T Consensus 19 ~~p~~~a~~~~~~--~~~~--~~~ty~~l~~~v~~la~~L~~~g~~~-~~~v~i~~~n~~~~--~~~~la~~~~G~~~v~ 91 (517)
T PRK08008 19 VYGHKTALIFESS--GGVV--RRYSYLELNEEINRTANLFYSLGIRK-GDKVALHLDNCPEF--IFCWFGLAKIGAIMVP 91 (517)
T ss_pred HCCCceEEEcccC--CCcc--ceeeHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEcCCCHHH--HHHHHHHHHcCeEEEE
Confidence 4677888654221 1111 24788877766655544 347776 88888887765543 3446889999999998
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..+.+.++.+...+++.++..++..
T Consensus 92 l~~~~~~~~l~~~l~~~~~~~l~~~ 116 (517)
T PRK08008 92 INARLLREESAWILQNSQASLLVTS 116 (517)
T ss_pred cCcccCHHHHHHHHHhcCceEEEEe
Confidence 8788999999999999999988754
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=88.04 E-value=11 Score=31.47 Aligned_cols=76 Identities=13% Similarity=0.024 Sum_probs=58.3
Q ss_pred echHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEEe
Q psy13808 111 LTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEYL 187 (190)
Q Consensus 111 ~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~ 187 (190)
+|.+.+.......+.. .++.+ ++++....|-... ++..+++.+..|+..+..++...++.+...+++.++..++
T Consensus 32 ~Ty~~l~~~~~~~a~~L~~~g~~~-~~~V~l~~~~~~~--~~~~~la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~ 108 (521)
T PRK06187 32 TTYAELDERVNRLANALRALGVKK-GDRVAVFDWNSHE--YLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVL 108 (521)
T ss_pred EcHHHHHHHHHHHHHHHHHcCCCC-CCEEEEECCCCHH--HHHHHHHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEE
Confidence 8888887666554433 46666 8888888876554 3455789999999999987788999999999999988876
Q ss_pred cc
Q psy13808 188 TK 189 (190)
Q Consensus 188 ~t 189 (190)
..
T Consensus 109 ~~ 110 (521)
T PRK06187 109 VD 110 (521)
T ss_pred Ec
Confidence 53
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=87.83 E-value=11 Score=31.54 Aligned_cols=92 Identities=12% Similarity=0.096 Sum_probs=67.2
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..|+.++++...+| -.+|...+.......+.. .++.+ ++++....+-.... ...+++.+..|+..+.
T Consensus 9 ~~p~~~a~~~~~~~-------~~~ty~~l~~~~~~la~~L~~~g~~~-~~~V~v~~~~~~~~--~~~~~a~~~~G~~~~~ 78 (511)
T PRK13391 9 TTPDKPAVIMASTG-------EVVTYRELDERSNRLAHLFRSLGLKR-GDHVAIFMENNLRY--LEVCWAAERSGLYYTC 78 (511)
T ss_pred hCCCceEEEecCCC-------CEeeHHHHHHHHHHHHHHHHHcCCCC-CCEEEEECCCCHHH--HHHHHHHHHhccEEec
Confidence 46677776655443 248888887666555443 36766 88888777765543 3447889999999998
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..+....+.+...+++.++..+...
T Consensus 79 l~~~~~~~~l~~~l~~~~~~~li~~ 103 (511)
T PRK13391 79 VNSHLTPAEAAYIVDDSGARALITS 103 (511)
T ss_pred cccccCHHHHHHHHhccCCcEEEEc
Confidence 8778899999999999999888664
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=87.81 E-value=9.7 Score=32.25 Aligned_cols=91 Identities=11% Similarity=0.134 Sum_probs=65.3
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEc
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVP 165 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~ 165 (190)
.|++++++-... +..+|.+.+.......+.. .++.+ ++++...+|-...+ ...+++.+..|+..+..
T Consensus 41 ~p~~~a~~~~~~-------~~~~Ty~~l~~~~~~la~~L~~~g~~~-g~~V~i~~~~~~~~--~~~~lA~~~~G~~~vpl 110 (546)
T PLN02330 41 YADKVAFVEAVT-------GKAVTYGEVVRDTRRFAKALRSLGLRK-GQVVVVVLPNVAEY--GIVALGIMAAGGVFSGA 110 (546)
T ss_pred CCCccEEEecCC-------CCcccHHHHHHHHHHHHHHHHHhCCCC-CCEEEEECCCchHH--HHHHHHHHHhCcEeccC
Confidence 567777553221 2468898887766555443 46666 88888777765543 34478899999998888
Q ss_pred CCCCChHHHHHHHHHCCceEEecc
Q psy13808 166 APSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 166 ~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.+....+++...+++.++..++..
T Consensus 111 ~~~~~~~~l~~~l~~~~~~~~i~~ 134 (546)
T PLN02330 111 NPTALESEIKKQAEAAGAKLIVTN 134 (546)
T ss_pred CccCCHHHHHHHHHhcCCeEEEEc
Confidence 677889999999999999888654
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=87.66 E-value=9.9 Score=31.78 Aligned_cols=89 Identities=8% Similarity=-0.041 Sum_probs=63.5
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEc
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVP 165 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~ 165 (190)
.|+.++++. ++-.+|...+......++.. .++.+ +|++...++-.- ..+..+++.+..|+..+..
T Consensus 16 ~p~~~a~~~---------~~~~~ty~el~~~~~~la~~L~~~g~~~-~~~v~v~~~n~~--~~~~~~~a~~~~G~~~v~l 83 (533)
T PRK07798 16 VPDRVALVC---------GDRRLTYAELEERANRLAHYLIAQGLGP-GDHVGIYARNRI--EYVEAMLGAFKARAVPVNV 83 (533)
T ss_pred CCCceEEEE---------CCceeeHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEcCCCH--HHHHHHHHHHhcCeEEEec
Confidence 456766544 23468888877666555443 46666 788777765433 2344578889999999988
Q ss_pred CCCCChHHHHHHHHHCCceEEecc
Q psy13808 166 APSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 166 ~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.+.+..+.+...+++.++..++..
T Consensus 84 ~~~~~~~~l~~~l~~~~~~~~~~~ 107 (533)
T PRK07798 84 NYRYVEDELRYLLDDSDAVALVYE 107 (533)
T ss_pred CcCCCHHHHHHHHhhcCCCEEEEc
Confidence 788899999999999998887653
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=87.57 E-value=11 Score=32.21 Aligned_cols=88 Identities=15% Similarity=0.151 Sum_probs=65.7
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhc----CCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRL----EFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~----~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
.|+.++++. . +..+|...+.......+..+ ++.+ +|++...+|-.-. ....+++.+..|+..+.
T Consensus 37 ~p~~~al~~--~-------~~~~Ty~el~~~~~~la~~L~~~~gi~~-gd~Vai~~~n~~~--~~~~~la~~~~Ga~~v~ 104 (562)
T PRK05677 37 FADKPAFSN--L-------GKTLTYGELYKLSGAFAAWLQQHTDLKP-GDRIAVQLPNVLQ--YPVAVFGAMRAGLIVVN 104 (562)
T ss_pred CCCCeeEEE--C-------CceeeHHHHHHHHHHHHHHHHHhcCCCC-CCEEEEECCCCHH--HHHHHHHHHHcCeEEee
Confidence 567777653 1 23588988887766655433 5666 8888888886544 34457889999999998
Q ss_pred cCCCCChHHHHHHHHHCCceEEec
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLT 188 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~ 188 (190)
..+.+..+++...+++-++..++.
T Consensus 105 l~~~~~~~~l~~~l~~~~~~~ii~ 128 (562)
T PRK05677 105 TNPLYTAREMEHQFNDSGAKALVC 128 (562)
T ss_pred cCCCCCHHHHHHHHhccCceEEEE
Confidence 878889999999999998888764
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=87.36 E-value=15 Score=30.32 Aligned_cols=91 Identities=12% Similarity=0.022 Sum_probs=66.4
Q ss_pred cCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhh---hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEE
Q psy13808 87 SLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGK---RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTV 163 (190)
Q Consensus 87 ~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv 163 (190)
...|+.++++.. .-.+|...+.......+. ..++.+ ++++....|-... ++..+++.+..|+..+
T Consensus 13 ~~~p~~~a~~~~---------~~~~Ty~el~~~~~~~a~~L~~~g~~~-~~~v~i~~~~~~~--~~~~~la~~~~G~~~v 80 (483)
T PRK03640 13 FLTPDRTAIEFE---------EKKVTFMELHEAVVSVAGKLAALGVKK-GDRVALLMKNGME--MILVIHALQQLGAVAV 80 (483)
T ss_pred HhCCCceEEEeC---------CeeeeHHHHHHHHHHHHHHHHHcCCCC-CCEEEEECCCCHH--HHHHHHHHHhCCcEEE
Confidence 346778776532 135888888766554443 335666 8888888776655 3455789999999999
Q ss_pred EcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 164 VPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..++...++++...+++.++..++..
T Consensus 81 ~i~~~~~~~~~~~~~~~~~~~~vi~~ 106 (483)
T PRK03640 81 LLNTRLSREELLWQLDDAEVKCLITD 106 (483)
T ss_pred ecCcCCCHHHHHHHHHhCCCCEEEEc
Confidence 99778899999999999998877654
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=87.27 E-value=11 Score=31.64 Aligned_cols=77 Identities=10% Similarity=0.049 Sum_probs=58.2
Q ss_pred EechHHHHHHHHHhhh---hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEE
Q psy13808 110 FLTHYNLINNSNFIGK---RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEY 186 (190)
Q Consensus 110 ~~sh~~~~~~~~~~~~---~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l 186 (190)
.+|.+.+.......+. ..++.+ ++++....+-.-. ++..+++.+..|+..+..++.+..+++...+++.+++.+
T Consensus 32 ~~Ty~el~~~~~~~a~~L~~~g~~~-g~~v~i~~~~~~~--~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~ 108 (528)
T PRK07470 32 SWTWREIDARVDALAAALAARGVRK-GDRILVHSRNCNQ--MFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAM 108 (528)
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCC-CCEEEEEcCCCHH--HHHHHHHHHhCCeEEEecCccCCHHHHHHHHHhcCceEE
Confidence 5788888766655443 346666 7888777765443 345578899999999988778899999999999999988
Q ss_pred ecc
Q psy13808 187 LTK 189 (190)
Q Consensus 187 ~~t 189 (190)
+..
T Consensus 109 i~~ 111 (528)
T PRK07470 109 ICH 111 (528)
T ss_pred EEc
Confidence 654
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=87.01 E-value=10 Score=32.15 Aligned_cols=89 Identities=12% Similarity=0.140 Sum_probs=64.4
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEc
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVP 165 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~ 165 (190)
.|+.++++.. +..+|...+.......+.. .++.+ +|++...++-.... ...+++.+..|+..+..
T Consensus 36 ~p~~~a~~~~---------~~~lTy~~l~~~~~~~a~~L~~~gi~~-gd~V~i~~~n~~~~--~~~~la~~~~G~~~v~v 103 (557)
T PRK07059 36 YADRPAFICM---------GKAITYGELDELSRALAAWLQSRGLAK-GARVAIMMPNVLQY--PVAIAAVLRAGYVVVNV 103 (557)
T ss_pred cCCCceEEEc---------CceeeHHHHHHHHHHHHHHHHHhCCCC-CCEEEEECCCCHHH--HHHHHHHHhcCeEEecc
Confidence 5666665541 2468999888766555443 36766 88887777754432 34468889999999988
Q ss_pred CCCCChHHHHHHHHHCCceEEecc
Q psy13808 166 APSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 166 ~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.+.+.++++...+++.++..++..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~vi~~ 127 (557)
T PRK07059 104 NPLYTPRELEHQLKDSGAEAIVVL 127 (557)
T ss_pred CcccCHHHHHHHHHccCceEEEEc
Confidence 778899999999999998887753
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=86.91 E-value=13 Score=31.09 Aligned_cols=89 Identities=15% Similarity=0.144 Sum_probs=62.8
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhh---hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEc
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGK---RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVP 165 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~ 165 (190)
.|++++++- . .-.+|...+.......+. ..+..+ ++++...++-. ..+...+++.+..|+..+..
T Consensus 18 ~p~~~a~~~--~-------~~~~ty~~l~~~~~~~a~~L~~~g~~~-g~~v~l~~~~~--~~~~~~~~a~~~~G~~~v~l 85 (508)
T TIGR02262 18 RGGKTAFID--D-------ISSLSYGELEAQVRRLGAALRRLGVKR-EERVLLLMLDG--VDFPIAFLGAIRAGIVPVAL 85 (508)
T ss_pred cCCceEEEe--C-------CceeeHHHHHHHHHHHHHHHHHcCCCC-CCEEEEECCCC--HHHHHHHHHHHHcCcEEeec
Confidence 567777543 1 124777777665544443 346666 77777665543 33455578899999999988
Q ss_pred CCCCChHHHHHHHHHCCceEEecc
Q psy13808 166 APSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 166 ~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
++.++++++...+++.+++.++..
T Consensus 86 ~~~~~~~~l~~~~~~~~~~~~i~~ 109 (508)
T TIGR02262 86 NTLLTADDYAYMLEDSRARVVFVS 109 (508)
T ss_pred cCCCCHHHHHHHHHhcCCeEEEEc
Confidence 788899999999999999988754
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=86.89 E-value=14 Score=31.53 Aligned_cols=78 Identities=15% Similarity=0.186 Sum_probs=60.1
Q ss_pred eEechHHHHHHHHHhhh---hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceE
Q psy13808 109 AFLTHYNLINNSNFIGK---RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCME 185 (190)
Q Consensus 109 v~~sh~~~~~~~~~~~~---~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~ 185 (190)
..+|.+.+.......+. ..++.+ ++++...++-... +...+++.+..|+..+...+.+.++++...+++.+++.
T Consensus 72 ~~~Ty~el~~~v~~~A~~L~~~gv~~-gd~V~i~~~n~~~--~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ 148 (570)
T PRK04319 72 EKYTYKELKELSNKFANVLKELGVEK-GDRVFIFMPRIPE--LYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKV 148 (570)
T ss_pred eeecHHHHHHHHHHHHHHHHHhCCCC-CCEEEEECCCCHH--HHHHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcE
Confidence 46888888776655544 346776 8888888775544 34557889999999998878899999999999999988
Q ss_pred Eecc
Q psy13808 186 YLTK 189 (190)
Q Consensus 186 l~~t 189 (190)
++..
T Consensus 149 ii~~ 152 (570)
T PRK04319 149 LITT 152 (570)
T ss_pred EEEC
Confidence 8754
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=86.88 E-value=11 Score=32.42 Aligned_cols=90 Identities=7% Similarity=-0.069 Sum_probs=66.3
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..+++++++.- .-.+|.+.+.......+.. .++.+ ++++...++-... ++..+++.+..|+..+.
T Consensus 49 ~~p~~~Ai~~~---------~~~~Ty~eL~~~~~~la~~L~~~g~~~-gd~V~i~~~n~~~--~v~~~lA~~~~G~~~v~ 116 (600)
T PRK08279 49 RHPDRPALLFE---------DQSISYAELNARANRYAHWAAARGVGK-GDVVALLMENRPE--YLAAWLGLAKLGAVVAL 116 (600)
T ss_pred hCCCCcEEEeC---------CCcccHHHHHHHHHHHHHHHHhcCCCC-CCEEEEECCCCHH--HHHHHHHHHhcCcEEee
Confidence 45677776641 1357888887766555443 46666 8888888776544 34557889999999998
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.++....+.+...+++.++..++..
T Consensus 117 l~~~~~~~~l~~~l~~~~~~~li~~ 141 (600)
T PRK08279 117 LNTQQRGAVLAHSLNLVDAKHLIVG 141 (600)
T ss_pred cCCCCCHHHHHHHHHhcCCCEEEEC
Confidence 8778899999999999999988754
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=86.85 E-value=14 Score=32.22 Aligned_cols=97 Identities=10% Similarity=-0.064 Sum_probs=67.5
Q ss_pred CCCCCeEEEEe--cCCCCCCCceeEechHHHHHHHHHhhh---hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEE
Q psy13808 88 LNCRDGINIQF--TSGTTGHPKAAFLTHYNLINNSNFIGK---RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTT 162 (190)
Q Consensus 88 ~~~~~~~~i~~--TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~v 162 (190)
..|+.+++..- ..|.+|. -..+|.+.+......++. ..++.+ +|++...+|-.--. +..+++.+..|+.+
T Consensus 56 ~~p~~~al~~~~~~~~~~~~--~~~lTy~el~~~v~~lA~~L~~~Gv~~-gd~Vai~~~n~~e~--~~~~lA~~~~G~v~ 130 (651)
T PLN02736 56 TFRDYKYLGTRIRVDGTVGE--YKWMTYGEAGTARTAIGSGLVQHGIPK-GACVGLYFINRPEW--LIVDHACSAYSYVS 130 (651)
T ss_pred hCCCCCeEEEEecCCCCCCC--cEEEEHHHHHHHHHHHHHHHHHhCCCC-CCEEEEEcCCCHHH--HHHHHHHHHcCCeE
Confidence 45677765321 2232221 234788888876665554 347777 88888877754432 34468889999999
Q ss_pred EEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 163 VVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 163 v~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+...+.+.++++...+++-++..++..
T Consensus 131 vpl~~~~~~~~l~~il~~~~~~~l~~~ 157 (651)
T PLN02736 131 VPLYDTLGPDAVKFIVNHAEVAAIFCV 157 (651)
T ss_pred EEeecCCCHHHHHHHHhccCCCEEEEC
Confidence 988788999999999999999988764
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=86.36 E-value=17 Score=30.28 Aligned_cols=92 Identities=9% Similarity=0.026 Sum_probs=66.0
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..|+.++++... +| -.+|...+......++.. .++.+ +|++...++-... .+..+++.+..|+..+.
T Consensus 9 ~~p~~~a~~~~~---~~----~~lTy~el~~~~~~la~~L~~~gv~~-gd~V~i~~~n~~~--~~~~~la~~~~Ga~~~~ 78 (501)
T PRK13390 9 IAPDRPAVIVAE---TG----EQVSYRQLDDDSAALARVLYDAGLRT-GDVVALLSDNSPE--ALVVLWAALRSGLYITA 78 (501)
T ss_pred hCCCCcEEEecC---CC----eEeeHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEeCCCHH--HHHHHHHHHHhCCEEec
Confidence 356777655422 12 358888887766655543 36666 8888877775544 34457889999999988
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..+.+.++++...++..++..+...
T Consensus 79 l~~~~~~~~~~~~~~~~~~~~~i~~ 103 (501)
T PRK13390 79 INHHLTAPEADYIVGDSGARVLVAS 103 (501)
T ss_pred cccCCCHHHHHHHHHhcCCcEEEEc
Confidence 8778899999999999998887653
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=86.21 E-value=13 Score=31.41 Aligned_cols=89 Identities=8% Similarity=0.107 Sum_probs=64.6
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhh---hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGK---RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..|++++++. +.-.+|...+......++. ..++.+ ++++...++-.... +..+++.+..|+..+.
T Consensus 22 ~~p~~~a~~~---------~~~~~Ty~~L~~~~~~~a~~L~~~g~~~-g~~V~i~~~n~~~~--~~~~la~~~~G~~~v~ 89 (540)
T PRK06164 22 ARPDAVALID---------EDRPLSRAELRALVDRLAAWLAAQGVRR-GDRVAVWLPNCIEW--VVLFLACARLGATVIA 89 (540)
T ss_pred hCCCCeEEec---------CCCcccHHHHHHHHHHHHHHHHHhCCCC-CCEEEEEcCCcHHH--HHHHHHHHHhCcEEEe
Confidence 3567777651 1235788888766554443 346666 88888877766543 4447889999999999
Q ss_pred cCCCCChHHHHHHHHHCCceEEec
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLT 188 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~ 188 (190)
..+....+++...+++.+++.++.
T Consensus 90 l~~~~~~~~l~~~i~~~~~~~ii~ 113 (540)
T PRK06164 90 VNTRYRSHEVAHILGRGRARWLVV 113 (540)
T ss_pred cCCCCCcHHHHHHHHhcCccEEEE
Confidence 877889999999999999988765
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=86.18 E-value=9.5 Score=32.39 Aligned_cols=76 Identities=12% Similarity=0.016 Sum_probs=60.3
Q ss_pred EechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEEec
Q psy13808 110 FLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLT 188 (190)
Q Consensus 110 ~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~ 188 (190)
.+|.+.+.......+..+.-.+ +|++...+|-...+ +..+++.+..|+..+...+.+..+++...++.-++..++.
T Consensus 45 ~~Ty~el~~~~~~lA~~L~~~~-gd~Val~~~n~~e~--~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~ 120 (539)
T PRK06334 45 KLSYNQVRKAVIALATKVSKYP-DQHIGIMMPASAGA--YIAYFATLLSGKIPVMINWSQGLREVTACANLVGVTHVLT 120 (539)
T ss_pred cccHHHHHHHHHHHHHHHhhcc-CCeEEEEcCCchHH--HHHHHHHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEe
Confidence 4799988888777776665445 88888888865443 4447899999999999877889999999999999988765
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=85.91 E-value=16 Score=30.77 Aligned_cols=91 Identities=9% Similarity=-0.020 Sum_probs=65.2
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhh---hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGK---RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..|+..+++... + ...+|...+.......+. ..++.+ +|++...+|-.-. ....+++.+..|+..+.
T Consensus 28 ~~p~~~ai~~~~-~------~~~~Ty~~l~~~~~~~a~~L~~~gv~~-gd~V~i~~~n~~~--~~~~~lA~~~~G~~~v~ 97 (534)
T PRK05852 28 RLPEAPALVVTA-D------RIAISYRDLARLVDDLAGQLTRSGLLP-GDRVALRMGSNAE--FVVALLAASRADLVVVP 97 (534)
T ss_pred hCCCCcEEEecC-C------CCcccHHHHHHHHHHHHHHHHhcCCCC-CCEEEEECCCcHH--HHHHHHHHHHcCcEEee
Confidence 356777755422 1 135788877766555443 346766 8888888775443 34457889999999998
Q ss_pred cCCCCChHHHHHHHHHCCceEEec
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLT 188 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~ 188 (190)
..+.+.++.+...++..++..++.
T Consensus 98 l~~~~~~~~l~~~l~~~~~~~ii~ 121 (534)
T PRK05852 98 LDPALPIAEQRVRSQAAGARVVLI 121 (534)
T ss_pred cCCCCCcHHHHHHHHhCCCCEEEE
Confidence 878889999999999999998874
|
|
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=85.82 E-value=0.34 Score=41.25 Aligned_cols=32 Identities=34% Similarity=0.230 Sum_probs=25.8
Q ss_pred cCCCCCeEEEEecCCCCCC-CceeEechHHHHH
Q psy13808 87 SLNCRDGINIQFTSGTTGH-PKAAFLTHYNLIN 118 (190)
Q Consensus 87 ~~~~~~~~~i~~TSGTTG~-PKgv~~sh~~~~~ 118 (190)
..-++.+.+...||||||. ||-+.+|...+..
T Consensus 76 vL~~~~~~~f~~TSGTTg~~~K~IP~T~~~l~~ 108 (528)
T PF03321_consen 76 VLTPGPPIYFALTSGTTGGKSKLIPYTKEFLKE 108 (528)
T ss_dssp CTSSS--SEEEEEEEEETTEEEEEEESHHHHHH
T ss_pred CCCCCCCCeEEeCCCCCCCCCceeeccHHHHHH
Confidence 3566778899999999999 9999999987654
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=85.81 E-value=19 Score=30.36 Aligned_cols=96 Identities=11% Similarity=0.079 Sum_probs=66.1
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..|+.++++..-... .....+|...+.......+.. .++.+ ++++...++-.... ...+++.+..|+.++.
T Consensus 34 ~~p~~~a~~~~~~~~---~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~-g~~V~i~~~~~~~~--~~~~la~~~~G~~~v~ 107 (538)
T TIGR03208 34 NCPDKPALTAYRDGH---GAVRRFSYRELDCRVDRIAVGLARLGVGR-GDVVSFQLPNRWEF--TALYLACARIGAVLNP 107 (538)
T ss_pred HCCCceEEEeecccC---CCcceecHHHHHHHHHHHHHHHHHcCCCC-CCEEEEECCCCHHH--HHHHHHHHhcCEEEec
Confidence 356777766532211 113468888887666554443 46666 88888777754432 3446888999999888
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..+...++++...++..++..++..
T Consensus 108 l~~~~~~~~l~~~l~~~~~~~li~~ 132 (538)
T TIGR03208 108 LMPIFRERELSFMLNHADSKVFVVP 132 (538)
T ss_pred cCcccCHHHHHHHHHhcCCeEEEEc
Confidence 8777899999999999999888753
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=85.61 E-value=12 Score=31.76 Aligned_cols=88 Identities=13% Similarity=0.136 Sum_probs=63.8
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhc----CCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRL----EFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~----~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
.|+.++++. ++..+|...+.......+..+ ++.+ +|++...++-.-. ....+++.+..|+..+.
T Consensus 37 ~p~~~a~~~---------~~~~~Ty~~l~~~~~~~a~~L~~~~gi~~-gd~V~i~~~n~~e--~~~~~la~~~~G~v~v~ 104 (562)
T PRK12492 37 FADRPAFSN---------LGVTLSYAELERHSAAFAAYLQQHTDLVP-GDRIAVQMPNVLQ--YPIAVFGALRAGLIVVN 104 (562)
T ss_pred CCCCeeEec---------CCceeeHHHHHHHHHHHHHHHHHhcCCCC-CCEEEEECCCCHH--HHHHHHHHHHcCeEEec
Confidence 566666542 124678888877665554433 6666 8888887775443 34557889999999998
Q ss_pred cCCCCChHHHHHHHHHCCceEEec
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLT 188 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~ 188 (190)
..+.+..+++...+++-++..++.
T Consensus 105 ~~~~~~~~~l~~~l~~~~~~~~i~ 128 (562)
T PRK12492 105 TNPLYTAREMRHQFKDSGARALVY 128 (562)
T ss_pred cCccCCHHHHHHHHhccCceEEEe
Confidence 877889999999999999888765
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=85.46 E-value=8.2 Score=32.90 Aligned_cols=77 Identities=8% Similarity=-0.022 Sum_probs=59.7
Q ss_pred EechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEE
Q psy13808 110 FLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEY 186 (190)
Q Consensus 110 ~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l 186 (190)
.+|...+.......+.. .++.+ +|++...+|-.-. ++..+++.+..|+..+...+.+.++++...+++.++..+
T Consensus 32 ~~Ty~el~~~~~~la~~L~~~Gv~~-gd~V~v~~~n~~~--~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i 108 (563)
T PLN02860 32 RRTGHEFVDGVLSLAAGLLRLGLRN-GDVVAIAALNSDL--YLEWLLAVACAGGIVAPLNYRWSFEEAKSAMLLVRPVML 108 (563)
T ss_pred eeeHHHHHHHHHHHHHHHHHhCCCC-CCEEEEEcCCCHH--HHHHHHHHhhccEEEEeCCcccCHHHHHHHHHhcCceEE
Confidence 57888887766555443 46777 8998888886544 344478889999999988788999999999999999888
Q ss_pred ecc
Q psy13808 187 LTK 189 (190)
Q Consensus 187 ~~t 189 (190)
+..
T Consensus 109 ~~~ 111 (563)
T PLN02860 109 VTD 111 (563)
T ss_pred EEe
Confidence 764
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=85.35 E-value=8.9 Score=32.55 Aligned_cols=91 Identities=14% Similarity=0.177 Sum_probs=66.7
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhh----hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGK----RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTV 163 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~----~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv 163 (190)
..+++++++.. | -.+|...+.......+. ..++.+ ++++...+|-.-. +...+++.+..|+..+
T Consensus 37 ~~~~~~a~~~~--~-------~~~Ty~el~~~~~~la~~L~~~~g~~~-g~~V~i~~~~~~~--~~~~~lA~~~~G~~~v 104 (560)
T PRK08751 37 KFADRPAYHSF--G-------KTITYREADQLVEQFAAYLLGELQLKK-GDRVALMMPNCLQ--YPIATFGVLRAGLTVV 104 (560)
T ss_pred hCCCCceEEEC--C-------ceeeHHHHHHHHHHHHHHHHHHhCCCC-CCEEEEECCCCHH--HHHHHHHHHHhCeEEe
Confidence 35677776532 2 24788888776655553 356776 8888887775543 3455788999999999
Q ss_pred EcCCCCChHHHHHHHHHCCceEEeccC
Q psy13808 164 VPAPSFKPMDSLRAIAKEKCMEYLTKD 190 (190)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~iT~l~~t~ 190 (190)
...+.+.++++...+++.+++.++..|
T Consensus 105 ~l~p~~~~~~~~~~l~~~~~~~vi~~~ 131 (560)
T PRK08751 105 NVNPLYTPRELKHQLIDSGASVLVVID 131 (560)
T ss_pred ccCccCCHHHHHHHHHhcCCeEEEEcc
Confidence 887889999999999999999887653
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=85.34 E-value=8.9 Score=32.19 Aligned_cols=91 Identities=10% Similarity=0.028 Sum_probs=65.3
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..|+.++++. -.+ .+|...+.......+.. .++.+ ++++...++-.-. .+..+++.+..|+..+.
T Consensus 47 ~~p~~~a~~~-~~~--------~lTy~el~~~~~~la~~L~~~gi~~-g~~V~i~~~~~~~--~~~~~la~~~~G~v~vp 114 (516)
T PRK13383 47 RWPGRTAIID-DDG--------ALSYRELQRATESLARRLTRDGVAP-GRAVGVMCRNGRG--FVTAVFAVGLLGADVVP 114 (516)
T ss_pred HCCCCcEEEe-CCC--------cEeHHHHHHHHHHHHHHHHhcCCCC-CCEEEEECCCCHH--HHHHHHHHHHhCeEEEE
Confidence 4567777543 111 47877777666555443 36666 8888877764332 34457889999999999
Q ss_pred cCCCCChHHHHHHHHHCCceEEeccC
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTKD 190 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t~ 190 (190)
.++.+.++.+...+++.++..++..|
T Consensus 115 l~~~~~~~~l~~~l~~~~~~~ii~~~ 140 (516)
T PRK13383 115 ISTEFRSDALAAALRAHHISTVVADN 140 (516)
T ss_pred cCccCCHHHHHHHHhcCCCCEEEEch
Confidence 87889999999999999999887643
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=85.20 E-value=18 Score=30.39 Aligned_cols=89 Identities=12% Similarity=-0.062 Sum_probs=63.7
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhh---hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEc
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGK---RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVP 165 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~ 165 (190)
.+++++++.. + ..+|...+.......+. ..++.+ ++++...++-.-. ....+++.+..|+..+..
T Consensus 25 ~~~~~a~~~~--~-------~~~Ty~~l~~~~~~~a~~L~~~gv~~-~~~V~i~~~~~~~--~~~~~la~~~~G~~~v~l 92 (524)
T PRK06188 25 YPDRPALVLG--D-------TRLTYGQLADRISRYIQAFEALGLGT-GDAVALLSLNRPE--VLMAIGAAQLAGLRRTAL 92 (524)
T ss_pred CCCCeEEEEC--C-------CcccHHHHHHHHHHHHHHHHHcCCCC-CCEEEEECCCCHH--HHHHHHHHHHhCCEEEec
Confidence 5667665542 1 36788888766655443 346666 7777777664433 344478899999999998
Q ss_pred CCCCChHHHHHHHHHCCceEEecc
Q psy13808 166 APSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 166 ~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.+....+.+...++..+++.+...
T Consensus 93 ~~~~~~~~~~~~l~~~~~~~~~~~ 116 (524)
T PRK06188 93 HPLGSLDDHAYVLEDAGISTLIVD 116 (524)
T ss_pred ccCCCHHHHHHHHHhcCceEEEEe
Confidence 778899999999999999988654
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=85.14 E-value=23 Score=30.36 Aligned_cols=92 Identities=16% Similarity=0.146 Sum_probs=68.7
Q ss_pred CeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh----cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCC
Q psy13808 92 DGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR----LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAP 167 (190)
Q Consensus 92 ~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~----~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~ 167 (190)
+...|+|-+-..+. -.+|.+.+.......+.. .+. + +|++...+|..--. ...+++++..|+......+
T Consensus 25 ~~~aii~~~e~~~~---~~~Ty~~L~~~v~r~A~~L~~~~gv-k-GDrV~iymp~~pe~--~~a~LA~~riGAI~~~vf~ 97 (528)
T COG0365 25 DDTAIIFDGEDGLF---RELTYGDLRREVARLANALKDLGGV-K-GDRVAIYMPNSPEA--VIALLATARIGAIPAVVSP 97 (528)
T ss_pred CceEEEEEcCCCCc---eEEEHHHHHHHHHHHHHHHHHhCCC-C-CCEEEEEcCCCHHH--HHHHHHHHHcCCEEeeccc
Confidence 34446666544444 678888887665554443 344 5 99999999987664 4447889999988887778
Q ss_pred CCChHHHHHHHHHCCceEEeccC
Q psy13808 168 SFKPMDSLRAIAKEKCMEYLTKD 190 (190)
Q Consensus 168 ~~~~~~~~~~i~~~~iT~l~~t~ 190 (190)
.|.++.+..-|+.-++.++++.|
T Consensus 98 ~f~~~al~~Ri~d~~~k~vit~d 120 (528)
T COG0365 98 GLSAEAVADRIADLGPKVLIADD 120 (528)
T ss_pred CCCHHHHHHHHHccCCCEEEEec
Confidence 89999999999999999998765
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=84.74 E-value=14 Score=29.66 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=48.4
Q ss_pred cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 127 LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 127 ~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.++.+ +|++....|-.-. +...+++.+..|+.++...+....+.+-..+++.+++.++..
T Consensus 20 ~g~~~-gd~v~l~~~n~~~--~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~ 79 (408)
T TIGR01733 20 GGVGP-GDRVAVLLERSAE--LVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTD 79 (408)
T ss_pred hCCCC-CCEEEEEeCCCHH--HHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEc
Confidence 45666 8888888776533 344478999999999988778899999999999999988764
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=84.58 E-value=23 Score=30.17 Aligned_cols=92 Identities=18% Similarity=0.219 Sum_probs=67.7
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhc---CCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRL---EFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~---~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..++.++++...-+. .+|.+.+.......+..+ ++.+ +|++...+|=...+ +..+++++..|+..+.
T Consensus 23 ~~~~~~a~~~~~~~~-------~~Ty~el~~~~~~~A~~L~~~~v~~-gdrVail~~N~~e~--~~~~~a~~~~Gav~vp 92 (534)
T COG0318 23 RNPDRPALIFLGRGG-------RLTYRELDRRANRLAAALQALGVKP-GDRVAILLPNSPEF--LIAFLAALRAGAVAVP 92 (534)
T ss_pred hCCCceEEEEcCCCc-------eeeHHHHHHHHHHHHHHHHHcCCCC-CCEEEEECCCCHHH--HHHHHHHHhcCEEEee
Confidence 456777765544433 788888887766555433 4555 88888888865543 4447889999999999
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..+...+.++...++..++..++..
T Consensus 93 ln~~~~~~~l~~~l~~~~~~~~~~~ 117 (534)
T COG0318 93 LNPRLTPRELAYILNDAGAKVLITS 117 (534)
T ss_pred cCcccCHHHHHHHHHhcCCeEEEEc
Confidence 9777889999999999888877654
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=83.70 E-value=10 Score=32.84 Aligned_cols=96 Identities=14% Similarity=0.058 Sum_probs=65.2
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..|+.++++....+ .| ..-.+|.+.+.......+.. .++.+ +|++...++-... .+..+++.+..|+..+.
T Consensus 61 ~~pd~~a~~~~~~~-~~--~~~~~Ty~el~~~v~~lA~~L~~~Gv~~-gd~V~i~~~n~~e--~~~~~lA~~~~G~v~vp 134 (624)
T PRK12582 61 EAPDRPWLAQREPG-HG--QWRKVTYGEAKRAVDALAQALLDLGLDP-GRPVMILSGNSIE--HALMTLAAMQAGVPAAP 134 (624)
T ss_pred HCCCchheecccCC-CC--ceEEeEHHHHHHHHHHHHHHHHHcCCCC-CCEEEEecCCCHH--HHHHHHHHHHcCCeEee
Confidence 35666665542211 12 13468988888776655543 36776 8888888884432 34457889999999988
Q ss_pred cCCCCCh-----HHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKP-----MDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~-----~~~~~~i~~~~iT~l~~t 189 (190)
..+.+.. +++...+++.++..++..
T Consensus 135 l~p~~~~~~~~~~~l~~~l~~~~~~~vi~~ 164 (624)
T PRK12582 135 VSPAYSLMSHDHAKLKHLFDLVKPRVVFAQ 164 (624)
T ss_pred ccCccccccCCHHHHHHHHHhcCCcEEEec
Confidence 8666653 899999999998887754
|
|
| >KOG1176|consensus | Back alignment and domain information |
|---|
Probab=83.46 E-value=9.6 Score=32.72 Aligned_cols=79 Identities=14% Similarity=0.080 Sum_probs=64.0
Q ss_pred eeEechHHHHHHHHHhhhhc---C--CcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCC
Q psy13808 108 AAFLTHYNLINNSNFIGKRL---E--FDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182 (190)
Q Consensus 108 gv~~sh~~~~~~~~~~~~~~---~--~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~ 182 (190)
|..+|++.+...+...+..+ + ... +|++...+|=...+. ...++.+..|+.+.-..+.+++.++...++.-+
T Consensus 43 g~~~T~~e~~~~~~r~A~~L~~~~~~i~~-gDvV~i~~pNs~~~~--~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~ 119 (537)
T KOG1176|consen 43 GRELTYSELHDRCRRLASALSELGLGIKK-GDVVGILAPNTPEFV--ELALAVPMAGAVLNPLNPRLTASEIAKQLKDSK 119 (537)
T ss_pred CcEEcHHHHHHHHHHHHHHHHhcCCCCCC-CCEEEEEcCCCHHHH--HHHHHHHHcCccccccCcccCHHHHHHHHHhcC
Confidence 88999999988776665544 2 454 999999999776654 335788899999998878899999999999999
Q ss_pred ceEEecc
Q psy13808 183 CMEYLTK 189 (190)
Q Consensus 183 iT~l~~t 189 (190)
..+++..
T Consensus 120 ~kiif~d 126 (537)
T KOG1176|consen 120 PKLIFVD 126 (537)
T ss_pred CeEEEEc
Confidence 9988763
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=83.37 E-value=15 Score=31.08 Aligned_cols=89 Identities=7% Similarity=0.044 Sum_probs=64.6
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---c-CCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---L-EFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~-~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
.++.++++... ..+|...+.......+.. . ++.+ ++++...++-.- ..+..+++.+..|+..+.
T Consensus 23 ~~~~~a~~~~~---------~~~Ty~~l~~~v~~~a~~L~~~~g~~~-g~~V~i~~~~~~--~~~~~~lA~~~~G~~~v~ 90 (546)
T PRK08314 23 YPDKTAIVFYG---------RAISYRELLEEAERLAGYLQQECGVRK-GDRVLLYMQNSP--QFVIAYYAILRANAVVVP 90 (546)
T ss_pred cCCCcceeecC---------ceecHHHHHHHHHHHHHHHHHhhCCCC-CCEEEEECCCCh--HHHHHHHHHHHcCcEEee
Confidence 56666655421 247888887666544432 2 7776 888887777543 234557899999999998
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..+...++++...+++.++..++.+
T Consensus 91 l~~~~~~~~l~~~l~~~~~~~ii~~ 115 (546)
T PRK08314 91 VNPMNREEELAHYVTDSGARVAIVG 115 (546)
T ss_pred cCcCcCHHHHHHHHHhCCCeEEEEc
Confidence 8788899999999999999887654
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=83.34 E-value=23 Score=30.23 Aligned_cols=90 Identities=7% Similarity=0.021 Sum_probs=65.6
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhc---CCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRL---EFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~---~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..|+.++++. +. ..+|...+.......+..+ ++.+ +|++....|-.-. .+..+++.+..|+..+.
T Consensus 32 ~~p~~~a~~~---~~------~~~ty~eL~~~~~~lA~~L~~~g~~~-gd~V~i~~~n~~~--~~~~~la~~~~G~v~v~ 99 (567)
T PLN02479 32 VHPTRKSVVH---GS------VRYTWAQTYQRCRRLASALAKRSIGP-GSTVAVIAPNIPA--MYEAHFGVPMAGAVVNC 99 (567)
T ss_pred hCCCceEEEE---CC------ceeeHHHHHHHHHHHHHHHHHcCCCC-CCEEEEECCCcHH--HHHHHHHHHhCCcEEEE
Confidence 4677777653 11 2478887777666555443 6776 8888877775433 34447889999999998
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..+.+..+++...+++.++..++..
T Consensus 100 l~~~~~~~~l~~~l~~~~~~~ii~~ 124 (567)
T PLN02479 100 VNIRLNAPTIAFLLEHSKSEVVMVD 124 (567)
T ss_pred eccccCHHHHHHHHhhcCceEEEEc
Confidence 8788999999999999999888754
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=83.33 E-value=14 Score=31.32 Aligned_cols=90 Identities=7% Similarity=-0.039 Sum_probs=65.9
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..+++++++. . .-.+|.+.+.......+.. .++.+ ++++....|-.... +..+++.+..|+..+.
T Consensus 33 ~~p~~~a~~~--~-------~~~~Ty~el~~~v~~la~~L~~~gi~~-g~~V~v~~~n~~~~--~~~~lA~~~~G~~~vp 100 (542)
T PRK06155 33 RYPDRPLLVF--G-------GTRWTYAEAARAAAAAAHALAAAGVKR-GDRVALMCGNRIEF--LDVFLGCAWLGAIAVP 100 (542)
T ss_pred HCCCCeEEEe--C-------CccccHHHHHHHHHHHHHHHHHcCCCC-CCEEEEECCCChHH--HHHHHHHHHhCCEEEE
Confidence 3567776543 1 1357888887766655543 46666 88888777755443 4457889999999998
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..+.+..+++...+++.+++.++..
T Consensus 101 l~~~~~~~~l~~~l~~~~~~~l~~~ 125 (542)
T PRK06155 101 INTALRGPQLEHILRNSGARLLVVE 125 (542)
T ss_pred eccccCHHHHHHHHHhcCceEEEEC
Confidence 8788999999999999999988754
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=83.23 E-value=13 Score=31.41 Aligned_cols=91 Identities=5% Similarity=0.001 Sum_probs=67.9
Q ss_pred cCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhc---CCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEE
Q psy13808 87 SLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRL---EFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTV 163 (190)
Q Consensus 87 ~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~---~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv 163 (190)
...++.++++. - +..+|.+.+.......+..+ ++.+ +|++...+|-... ++..+++.+..|+..+
T Consensus 29 ~~~~~~~a~~~-~--------~~~~ty~~L~~~~~~~a~~L~~~g~~~-g~~v~i~~~~~~~--~~~~~lA~~~~G~~~v 96 (545)
T PRK08162 29 EVYPDRPAVIH-G--------DRRRTWAETYARCRRLASALARRGIGR-GDTVAVLLPNIPA--MVEAHFGVPMAGAVLN 96 (545)
T ss_pred HHCCCCeEEEE-C--------CeEEEHHHHHHHHHHHHHHHHHhCCCC-CCEEEEECCCchH--HHHHHHHHHHhCcEEe
Confidence 34677777543 1 13588888887766555433 6766 8888888886654 3445788999999999
Q ss_pred EcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 164 VPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..++.+..+++...+++.+++.++..
T Consensus 97 pl~~~~~~~~~~~~l~~~~~~~i~~~ 122 (545)
T PRK08162 97 TLNTRLDAASIAFMLRHGEAKVLIVD 122 (545)
T ss_pred ccccccChHHHHHHHHhCCCeEEEEc
Confidence 88788999999999999999988753
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=82.89 E-value=13 Score=30.89 Aligned_cols=78 Identities=17% Similarity=0.066 Sum_probs=57.8
Q ss_pred EechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEE
Q psy13808 110 FLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEY 186 (190)
Q Consensus 110 ~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l 186 (190)
.+|...+.......+.. .+..+ ++++....+-... ....+++.+..|+..+...+...++.+...+++.++..+
T Consensus 27 ~~t~~~l~~~~~~~a~~l~~~g~~~-~~~v~~~~~~~~~--~~~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (503)
T PRK04813 27 KLTYGQLKEDSDALAAFIDSLKLPD-KSPIIVFGHMSPE--MLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLI 103 (503)
T ss_pred EEeHHHHHHHHHHHHHHHHHhCCCC-CCEEEEEcCCCHH--HHHHHHHHHHcCCEEecCCCCChHHHHHHHHHhcCCCEE
Confidence 48888887766555443 35555 7887777764433 345578899999999988777889999999999999988
Q ss_pred eccC
Q psy13808 187 LTKD 190 (190)
Q Consensus 187 ~~t~ 190 (190)
+..|
T Consensus 104 ~~~~ 107 (503)
T PRK04813 104 IATE 107 (503)
T ss_pred Eecc
Confidence 7653
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=82.78 E-value=17 Score=29.56 Aligned_cols=61 Identities=7% Similarity=0.012 Sum_probs=48.9
Q ss_pred hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 126 RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 126 ~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..++.+ +|++...+|-.-. ....+++.+..|+..+..++.+..+.+...+++.++..++..
T Consensus 18 ~~g~~~-gd~v~i~~~~~~~--~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 78 (436)
T TIGR01923 18 AQGIRS-GSRVALVGQNSIE--MVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTD 78 (436)
T ss_pred HhCCCC-CCEEEEEcCCCHH--HHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEc
Confidence 346766 8888888776543 345578899999999998788999999999999999988754
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=82.40 E-value=13 Score=32.06 Aligned_cols=95 Identities=11% Similarity=-0.020 Sum_probs=66.5
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..|+.++++... ..| ....+|.+.+.......+.. .++.+ +|++...++-..- .+..+++.+..|+.++.
T Consensus 51 ~~p~~~a~~~~~--~~~--~~~~~Ty~el~~~v~~~A~~L~~~Gv~~-gd~Vai~~~n~~e--~~~~~lA~~~~Gav~vp 123 (614)
T PRK08180 51 EAPDRVFLAERG--ADG--GWRRLTYAEALERVRAIAQALLDRGLSA-ERPLMILSGNSIE--HALLALAAMYAGVPYAP 123 (614)
T ss_pred HCCCCceeeecc--CCC--ceeEeeHHHHHHHHHHHHHHHHHcCCCC-CCEEEEecCCCHH--HHHHHHHHHHcCCeEee
Confidence 356777765431 112 13467888888776665543 36666 8888887775544 34447889999999998
Q ss_pred cCCCCC-----hHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFK-----PMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~-----~~~~~~~i~~~~iT~l~~t 189 (190)
.++.+. ++++...+++.++..++..
T Consensus 124 l~~~~~~~~~~~~~l~~~l~~~~~~~li~~ 153 (614)
T PRK08180 124 VSPAYSLVSQDFGKLRHVLELLTPGLVFAD 153 (614)
T ss_pred eccccccccCCHHHHHHHHhcCCCcEEEEc
Confidence 866666 7899999999999888764
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=82.04 E-value=17 Score=30.24 Aligned_cols=77 Identities=14% Similarity=0.071 Sum_probs=57.6
Q ss_pred EechHHHHHHHHHhhhhc---CCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEE
Q psy13808 110 FLTHYNLINNSNFIGKRL---EFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEY 186 (190)
Q Consensus 110 ~~sh~~~~~~~~~~~~~~---~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l 186 (190)
.+|...+.......+..+ ++.+ ++++....+-.-.. ...+++.+..|+..+..++....+.+...+++.++..+
T Consensus 25 ~~ty~el~~~~~~~a~~L~~~g~~~-~~~V~i~~~~~~~~--~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~i 101 (502)
T TIGR01734 25 ELTYQQLKEQSDRLAAFIQKRILPK-KSPIIVYGHMEPHM--LVAFLGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELV 101 (502)
T ss_pred EEeHHHHHHHHHHHHHHHHHhCCCC-CCeEEEEeCCCHHH--HHHHHHHHHhCCEEeCCCCcChHHHHHHHHHhcCCCEE
Confidence 688888887666555433 5565 67777666654433 34478899999998888777888999999999999988
Q ss_pred ecc
Q psy13808 187 LTK 189 (190)
Q Consensus 187 ~~t 189 (190)
+.+
T Consensus 102 i~~ 104 (502)
T TIGR01734 102 IHT 104 (502)
T ss_pred Eec
Confidence 765
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=81.48 E-value=20 Score=29.53 Aligned_cols=90 Identities=10% Similarity=-0.034 Sum_probs=65.3
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..|++++++. . +..+|.+.+.......+.. .++.+ ++++....+-.-. ....+++.+..|+..+.
T Consensus 15 ~~~~~~a~~~--~-------~~~~ty~el~~~~~~~a~~L~~~g~~~-~~~v~l~~~~~~~--~~~~~la~~~~G~~~v~ 82 (458)
T PRK09029 15 VRPQAIALRL--N-------DEVLTWQQLCARIDQLAAGFAQQGVVE-GSGVALRGKNSPE--TLLAYLALLQCGARVLP 82 (458)
T ss_pred hCCCceeeec--C-------CcceeHHHHHHHHHHHHHHHHHcCCCC-CCEEEEecCCCHH--HHHHHHHHHHcCCEEee
Confidence 3567777652 1 2358888888776665543 36666 7888777665443 24447888999999999
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..+...++.+-..+++.++..++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~i~~ 107 (458)
T PRK09029 83 LNPQLPQPLLEELLPSLTLDFALVL 107 (458)
T ss_pred cCCCCCHHHHHHHHHhcCCCEEEEc
Confidence 8788899999999999999887754
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=81.01 E-value=19 Score=30.06 Aligned_cols=78 Identities=10% Similarity=0.001 Sum_probs=57.5
Q ss_pred EechHHHHHHHHHhhh---hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceEE
Q psy13808 110 FLTHYNLINNSNFIGK---RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEY 186 (190)
Q Consensus 110 ~~sh~~~~~~~~~~~~---~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l 186 (190)
.+|...+.......+. ..++.+ +|++....+-.... ...+++.+..|+..+..++.+..+.+...+++.++..+
T Consensus 11 ~~ty~el~~~v~~~a~~L~~~g~~~-~~~V~i~~~~~~~~--~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~i 87 (502)
T PRK08276 11 VVTYGELEARSNRLAHGLRALGLRE-GDVVAILLENNPEF--FEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVL 87 (502)
T ss_pred EEEHHHHHHHHHHHHHHHHHhCCCC-CCEEEEEeCCCHHH--HHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEE
Confidence 4666666655444333 346776 88888887765443 34478899999999988778899999999999999988
Q ss_pred eccC
Q psy13808 187 LTKD 190 (190)
Q Consensus 187 ~~t~ 190 (190)
+..|
T Consensus 88 i~~~ 91 (502)
T PRK08276 88 IVSA 91 (502)
T ss_pred EEcc
Confidence 7653
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=80.78 E-value=18 Score=31.79 Aligned_cols=78 Identities=10% Similarity=0.006 Sum_probs=60.0
Q ss_pred eEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceE
Q psy13808 109 AFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCME 185 (190)
Q Consensus 109 v~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~ 185 (190)
..+|.+.+.......+.. .++.+ +|++...++-..- .+...++.+..|+..|...+.+.++++...+++-++..
T Consensus 76 ~~~Ty~el~~~v~~lA~~L~~~Gv~~-gd~Vai~~~n~~e--~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~ 152 (660)
T PLN02861 76 VWLTYKEVYDAAIRIGSAIRSRGVNP-GDRCGIYGSNCPE--WIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSI 152 (660)
T ss_pred eEEEHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEcCCCHH--HHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCE
Confidence 358888888766655543 46776 8888887775443 23447889999999998878899999999999999988
Q ss_pred Eecc
Q psy13808 186 YLTK 189 (190)
Q Consensus 186 l~~t 189 (190)
++..
T Consensus 153 v~~~ 156 (660)
T PLN02861 153 AFVQ 156 (660)
T ss_pred EEEC
Confidence 8753
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=80.29 E-value=16 Score=32.10 Aligned_cols=97 Identities=9% Similarity=-0.014 Sum_probs=67.3
Q ss_pred CCCCCeEEEEec--CCCCCCCceeEechHHHHHHHHHhhh---hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEE
Q psy13808 88 LNCRDGINIQFT--SGTTGHPKAAFLTHYNLINNSNFIGK---RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTT 162 (190)
Q Consensus 88 ~~~~~~~~i~~T--SGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~v 162 (190)
..|+.++++.-. .|..|. -..+|.+.+......++. ..++.+ +|++...++-..- ++...++.+..|+..
T Consensus 57 ~~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~v~~lA~~L~~~Gv~~-Gd~Vai~~~n~~e--~~~~~lA~~~~Gav~ 131 (666)
T PLN02614 57 KYPNNPMLGRREIVDGKPGK--YVWQTYQEVYDIVIKLGNSLRSVGVKD-EAKCGIYGANSPE--WIISMEACNAHGLYC 131 (666)
T ss_pred hCCCCCeEEEecccCCCCCC--cEEeEHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEcCCCHH--HHHHHHHHHHcCCEE
Confidence 356777765321 121121 134688887766655544 347777 8888887775543 344478899999999
Q ss_pred EEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 163 VVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 163 v~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
|...+.+.++++...+++.++.+++..
T Consensus 132 vpl~~~~~~~~l~~il~~~~~~~vi~~ 158 (666)
T PLN02614 132 VPLYDTLGAGAVEFIISHSEVSIVFVE 158 (666)
T ss_pred EEecCCCCHHHHHHHHhccCCCEEEEC
Confidence 988788999999999999999988764
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=80.23 E-value=30 Score=29.42 Aligned_cols=88 Identities=14% Similarity=0.217 Sum_probs=63.1
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh----cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR----LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~----~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
.|+.++++. . +-.+|...+.......+.. .++.+ ++++....+-... +...+++.+..|+..+.
T Consensus 36 ~p~~~a~~~--~-------~~~lTy~~l~~~~~~la~~L~~~~g~~~-g~~V~i~~~~~~~--~~~~~lA~~~~G~~~v~ 103 (560)
T PRK08974 36 YADQPAFIN--M-------GEVMTFRKLEERSRAFAAYLQNGLGLKK-GDRVALMMPNLLQ--YPIALFGILRAGMIVVN 103 (560)
T ss_pred CCCCceEEE--C-------CccccHHHHHHHHHHHHHHHHHhcCCCC-CCEEEEECCCCHH--HHHHHHHHHHcCcEEec
Confidence 566677653 1 2357888877666555443 35665 7887777664433 34557899999999998
Q ss_pred cCCCCChHHHHHHHHHCCceEEec
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLT 188 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~ 188 (190)
.++...++.+.+.+++.++..+..
T Consensus 104 l~~~~~~~~~~~~l~~~~~~~ii~ 127 (560)
T PRK08974 104 VNPLYTPRELEHQLNDSGAKAIVI 127 (560)
T ss_pred cCccCCHHHHHHHHHhcCceEEEE
Confidence 878889999999999999888764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 190 | ||||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 3e-06 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 3e-06 | ||
| 3kxw_A | 590 | The Crystal Structure Of Fatty Acid Amp Ligase From | 9e-06 | ||
| 1t5d_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl | 2e-05 | ||
| 3dlp_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, | 2e-05 | ||
| 2qvz_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO | 2e-05 | ||
| 2qvx_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO | 2e-05 | ||
| 3cw8_X | 504 | 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb | 3e-05 | ||
| 1t5h_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE | 4e-05 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 6e-05 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 2e-04 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 5e-04 |
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590 | Back alignment and structure |
|
| >pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504 | Back alignment and structure |
|
| >pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504 | Back alignment and structure |
|
| >pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 4e-30
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 87 SLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTF 146
+ D +Q + G+TG K TH + I + + D + L +PM H +
Sbjct: 178 EVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHST-VYLAALPMAHNY 236
Query: 147 GTAM-GILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
+ G+L + G VV +PS P D+ I +EK
Sbjct: 237 PLSSPGVLGVLYAGG-RVVLSPSPSPDDAFPLIEREKV 273
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 5e-30
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 1/97 (1%)
Query: 87 SLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTF 146
S + Q + G+TG PK TH + + + + ++L +P H F
Sbjct: 187 STPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNT-RLLCALPAPHNF 245
Query: 147 GTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
+ + H VV AP+ +P++ I + +
Sbjct: 246 MLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQV 282
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 3e-29
Identities = 25/123 (20%), Positives = 40/123 (32%), Gaps = 9/123 (7%)
Query: 62 GTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSN 121
G L D + ++ + Q + GTTG PK TH + +
Sbjct: 161 GEHNLQDAINHPAEDFTATP------SPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVR 214
Query: 122 FIGKRLEFDKTDHKILLQVPMFHTFGTAM-GILNAMNHGSTTVVPAPSFKPMDSLRAIAK 180
+ +F + + L +P H + + G L G TVV A I K
Sbjct: 215 RSVEICQFTQQT-RYLCAIPAAHNYAMSSPGSLGVFLAGG-TVVLAADPSATLCFPLIEK 272
Query: 181 EKC 183
+
Sbjct: 273 HQV 275
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 9e-29
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 92 DGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDH-KILLQVPMFHTFGTAM 150
I +TSGTTG PKAA + + F+ ++ H +L +P++H G
Sbjct: 154 QPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFA 213
Query: 151 GILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
++ A+ T VV F+P+D+L+ + +E+
Sbjct: 214 VLVAALALDGTYVVV-EEFRPVDALQLVQQEQV 245
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 97.3 bits (243), Expect = 5e-24
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 9/134 (6%)
Query: 47 ADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHP 106
A + + L G L+D GA + D I +TSGTTG
Sbjct: 118 AAKVGATVETLGPD-GRGSLTDAAAGASEAFATI------DRGADDLAAILYTSGTTGRS 170
Query: 107 KAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPA 166
K A L+H NL +NS + F D ++ +P++HT G + + +++
Sbjct: 171 KGAMLSHDNLASNSLTLVDYWRFTPDDV-LIHALPIYHTHGLFVASNVTLFARG-SMIFL 228
Query: 167 PSFKPMDSLRAIAK 180
P F P L +A+
Sbjct: 229 PKFDPDKILDLMAR 242
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 4e-23
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 92 DGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMG 151
D +I FTSGTTG KA T N ++ + L FD+ L +P++H G ++
Sbjct: 164 DIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDT-NWLSVLPIYHISGLSV- 221
Query: 152 ILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
+L A+ G TV F L I E+
Sbjct: 222 LLRAVIEGF-TVRIVDKFNAEQILTMIKNERI 252
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 4e-22
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 92 DGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMG 151
D + I +TSGTTGHPK TH ++ + ++ ++ D ++LL +PMFH
Sbjct: 171 DNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRD-RLLLPLPMFHVAALTTV 229
Query: 152 ILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
+ + G T++ P F I +E+
Sbjct: 230 -IFSAMRGV-TLISMPQFDATKVWSLIVEERV 259
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 1e-21
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Query: 92 DGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMG 151
DG I T+ G P+ A ++ NL+ + + + D L +P+FH G +
Sbjct: 161 DGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEAD-VNLGMLPLFHVTGLGLM 219
Query: 152 ILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
L G +V+ A F P + R I K
Sbjct: 220 -LTLQQAGGASVI-AAKFDPAQAARDIEAHKV 249
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 2e-20
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
+ +TSGTTG PK A + L + + ++ D ++ +P+FH G +GIL
Sbjct: 160 VVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDV-LVQGLPLFHVHGLVLGILGP 218
Query: 156 MNHGSTTVVPAPSFKPMDSLRAIA 179
+ G +V F + R +
Sbjct: 219 LRRGG-SVRHLGRFSTEGAARELN 241
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 4e-20
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 12/126 (9%)
Query: 62 GTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINN-- 119
G S++ Q E + ++ D + + ++SGTTG PK LTH LI +
Sbjct: 155 GCLHFSELTQADENEAPQV------DISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVA 208
Query: 120 --SNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRA 177
+ L F D IL +PMFH + +L + G+ ++ P F+ L
Sbjct: 209 QQVDGDNPNLYFHSED-VILCVLPMFHIYALNSIMLCGLRVGAPILI-MPKFEIGSLLGL 266
Query: 178 IAKEKC 183
I K K
Sbjct: 267 IEKYKV 272
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 2e-19
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
I +T GTTG PK LTH+NL N+ + D I+ +PMFH+ G++N
Sbjct: 185 IPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMD-TIVGCMPMFHSAE--FGLVNL 241
Query: 156 MNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
M V F I K K
Sbjct: 242 MVTVGNEYVVMGMFNQEMLAENIEKYKG 269
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 3e-19
Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 5/125 (4%)
Query: 62 GTFRLSDIMQGAGPEYHRRREQISKSLN-CRDGINIQFTSGTTGHPKAAFLTHYNLINNS 120
G L ++ P + + ++ I +SG+TG PK LTH N++
Sbjct: 162 GYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRF 221
Query: 121 NFIGKRLEFDKT--DHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAI 178
+ + ++ +L VP H FG L + G VV F L+ +
Sbjct: 222 SHARDPIYGNQVSPGTAVLTVVPFHHGFGMFT-TLGYLICGF-RVVMLTKFDEETFLKTL 279
Query: 179 AKEKC 183
KC
Sbjct: 280 QDYKC 284
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 3e-19
Identities = 28/125 (22%), Positives = 42/125 (33%), Gaps = 5/125 (4%)
Query: 62 GTFRLSDIMQGAGPEYHRRREQISKSLNCRDGIN-IQFTSGTTGHPKAAFLTHYNLINNS 120
G + + P + + +S + I I +SG+TG PK L H
Sbjct: 160 GFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRF 219
Query: 121 NFI--GKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAI 178
+ D IL VP H FG L + G V+ F+ LR++
Sbjct: 220 SHARDPIFGNQIIPDTAILSVVPFHHGFGM-FTTLGYLICGFRVVL-MYRFEEELFLRSL 277
Query: 179 AKEKC 183
K
Sbjct: 278 QDYKI 282
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 4e-18
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 62 GTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINN-- 119
G R +++ Q ++ D + + ++SGTTG PK LTH L+ +
Sbjct: 199 GCLRFTELTQSTTEASEVIDS---VEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVA 255
Query: 120 -SNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAI 178
+ +D IL +PMFH + +L + G+ ++ P F+ L I
Sbjct: 256 QQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILI-MPKFEINLLLELI 314
Query: 179 AKEKC 183
+ K
Sbjct: 315 QRCKV 319
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 6e-18
Identities = 17/87 (19%), Positives = 35/87 (40%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
++SG+TG PK TH NL + K + + + +F +G G+
Sbjct: 188 WLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFP 247
Query: 156 MNHGSTTVVPAPSFKPMDSLRAIAKEK 182
++ G+T ++ A + + +
Sbjct: 248 LSVGATAILMAERPTADAIFARLVEHR 274
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 5e-15
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
+Q+TSG+T HPK ++H+NL++N N I + I +P H G IL
Sbjct: 172 LQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETI-IFSWLPPHHDMGLIGCILTP 230
Query: 156 MNHGSTTVVPAP-SF--KPMDSLRAIAKEKC 183
+ G ++ +P SF P+ L+ I K K
Sbjct: 231 IYGGIQAIMMSPFSFLQNPLSWLKHITKYKA 261
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 1e-14
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQV-----PMFHTFGTAM 150
+Q+TSG+T P ++H N+ N + D P +H G +
Sbjct: 188 LQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVI 247
Query: 151 GILNAMNHGSTTVVPAP-SF--KPMDSLRAIAKEKC 183
GI + G V+ +P SF +P + +A +
Sbjct: 248 GICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFH 283
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 1e-08
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 14/99 (14%)
Query: 91 RDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQ-VPMFH----- 144
R + +T+GTTG PK +H L+ +S ++ ++L VPMFH
Sbjct: 176 RAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWC 235
Query: 145 -TFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
+ + G+ V+P P P + E
Sbjct: 236 LPYAATL-------VGAKQVLPGPRLDPASLVELFDGEG 267
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 5e-06
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFG---TAMGILN 154
FTSGTTG PK ++H NL++ +N++ + FD +L + + M
Sbjct: 152 FTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLA---QPPYSFDLSVMYWAP 208
Query: 155 AMNHGSTTVVPAP 167
+ G T
Sbjct: 209 TLALGGTLFALPK 221
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 5e-05
Identities = 26/145 (17%), Positives = 47/145 (32%), Gaps = 20/145 (13%)
Query: 47 ADALPTKLTRL----ALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGT 102
A P+ +L G ++ A +H ++ I FTSGT
Sbjct: 164 ASECPSLRIKLLVSEKSCDGWLNFKKLLNEASTTHHCVE------TGSQEASAIYFTSGT 217
Query: 103 TGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVP----MFHTFGTAMGILNAMNH 158
+G PK A ++ +L I+ + + + + M
Sbjct: 218 SGLPKMAEHSYSSLG--LKAKMDAGWTGLQASDIMWTISDTGWILNILCSLME---PWAL 272
Query: 159 GSTTVV-PAPSFKPMDSLRAIAKEK 182
G+ T V P F P+ L+ ++
Sbjct: 273 GACTFVHLLPKFDPLVILKTLSSYP 297
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 5e-05
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 8/73 (10%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFG---TAMGILN 154
+TSG+TG+PK ++ NL + +++I I L F + M +
Sbjct: 150 YTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGK--IFLN---QAPFSFDLSVMDLYP 204
Query: 155 AMNHGSTTVVPAP 167
+ G T
Sbjct: 205 CLQSGGTLHCVTK 217
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 6e-05
Identities = 15/103 (14%), Positives = 30/103 (29%), Gaps = 6/103 (5%)
Query: 81 REQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEF--DKTDHKILL 138
+ + L + + GTTG PK + ++ + + L
Sbjct: 81 ANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLA 140
Query: 139 QVPMF-HTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAK 180
+P H G A+ G P R++++
Sbjct: 141 AIPTGPHIVGAINKER-ALRLGGMFFS--IDIDPRWVKRSLSE 180
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 7e-05
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFG---TAMGILN 154
+TSG+TG+PK +T+ L++ + + + + L F + M I
Sbjct: 151 YTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQ--VFLN---QAPFSFDLSVMDIYP 205
Query: 155 AMNHGSTTVVPAP 167
++ G T
Sbjct: 206 SLVTGGTLWAIDK 218
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 40.9 bits (97), Expect = 1e-04
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFG---TAMGILN 154
+TSGTTG+PK L H + N F L + D + Q F + + +
Sbjct: 189 YTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDR--IGQ---FASISFDASVWEMFM 243
Query: 155 AMNHGSTTVVPAP-SFKPMDSL-RAIAKEK 182
A+ G++ + + + I +++
Sbjct: 244 ALLTGASLYIILKDTINDFVKFEQYINQKE 273
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 3e-04
Identities = 19/96 (19%), Positives = 28/96 (29%), Gaps = 16/96 (16%)
Query: 98 FTSGTTGHPKAAFLTHYNLIN--------NSNFIGKRLEFDKTDHKILLQVPMFHTFG-- 147
+TSG+TG PK ++ +NL + N K LE L +
Sbjct: 182 YTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGK--FLC---LASRAFD 236
Query: 148 -TAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
+ A G V D R +
Sbjct: 237 VHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELG 272
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 38.8 bits (91), Expect = 8e-04
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 9/73 (12%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFG---TAMGILN 154
+TSGTTG PK TH N+ + +D L +
Sbjct: 614 YTSGTTGKPKGNITTHANIQ---GLVKHVDYMAFSDQDTFLS---VSNYAFDAFTFDFYA 667
Query: 155 AMNHGSTTVVPAP 167
+M + + ++
Sbjct: 668 SMLNAARLIIADE 680
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 190 | |||
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 99.93 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 99.92 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 99.92 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 99.92 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 99.92 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 99.92 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 99.92 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 99.92 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 99.92 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 99.91 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 99.91 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 99.91 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 99.91 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 99.91 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 99.91 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 99.91 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 99.91 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 99.9 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 99.9 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 99.89 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 99.89 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 99.89 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 99.89 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 99.89 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 99.89 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 99.89 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 99.88 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 99.87 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 99.86 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 99.86 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 99.86 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 99.83 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 99.75 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.73 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.72 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.72 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 94.03 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 93.67 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 93.33 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 93.21 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 93.03 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 92.97 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 92.91 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 92.65 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 92.62 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 92.53 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 92.34 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 92.32 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 92.19 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 92.09 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 92.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 91.9 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 91.86 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 91.43 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 91.4 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 91.07 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 90.76 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 90.64 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 90.25 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 89.63 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 89.23 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 86.57 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 86.46 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 85.18 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 84.73 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 81.36 |
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=190.25 Aligned_cols=166 Identities=12% Similarity=0.102 Sum_probs=128.3
Q ss_pred CCCCCCccchhhhhhccCCCCCCCCCCCCC--------------CCCCCCCcEEEEeec-----------CcccHHHHHh
Q psy13808 17 ESQPFRERTLSHQDKIRPGRESNPRPSAYK--------------ADALPTKLTRLALRM-----------GTFRLSDIMQ 71 (190)
Q Consensus 17 i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~--------------~~~~~~~~~~i~~~~-----------~~~~~~~l~~ 71 (190)
++|.++++++.+++++++|+++|+++.... ...++..+.++++.. ....|.+++.
T Consensus 169 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (663)
T 1ry2_A 169 VFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKK 248 (663)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHHHHHT
T ss_pred eCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCCCccccHHHHHh
Confidence 389999999999999999999999876332 122345556655421 1234666655
Q ss_pred cCCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHH-HhhhhcCCcCCCcEEEEeCCchhHHHHHH
Q psy13808 72 GAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSN-FIGKRLEFDKTDHKILLQVPMFHTFGTAM 150 (190)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~-~~~~~~~~~~~~~~~l~~~pl~h~~g~~~ 150 (190)
...... .....+++|+++|+|||||||+||||+++|+++..... .....+++.+ +|++++..|++|..|..+
T Consensus 249 ~~~~~~------~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~g~~~ 321 (663)
T 1ry2_A 249 KYKTYY------PCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQ-EDVFFTAGDIGWITGHTY 321 (663)
T ss_dssp TSCSCC------CCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCS-SCEEEECSCTTSHHHHHH
T ss_pred hcCCCC------CccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCC-CcEEEEcCCcHHhhhhHH
Confidence 322111 12345689999999999999999999999999886653 4455678887 999999999999999767
Q ss_pred HHHHHHHhCCEEEEcCC---CCChHHHHHHHHHCCceEEecc
Q psy13808 151 GILNAMNHGSTTVVPAP---SFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 151 ~~~~~l~~G~~vv~~~~---~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.++.+|..|+++++++. .++++.+++.|+++++|+++++
T Consensus 322 ~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~ 363 (663)
T 1ry2_A 322 VVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVA 363 (663)
T ss_dssp TTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEec
Confidence 78899999999999853 2689999999999999999864
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.2e-25 Score=182.33 Aligned_cols=164 Identities=17% Similarity=0.185 Sum_probs=126.8
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCC-----CCCCCCCcEEEEeec----CcccHHHHHhcCCCcchhhhhhhh
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYK-----ADALPTKLTRLALRM----GTFRLSDIMQGAGPEYHRRREQIS 85 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~~~~~~~~i~~~~----~~~~~~~l~~~~~~~~~~~~~~~~ 85 (190)
|++||.++.+++.+++++++++++|++.+... ...++..+.++.+.. +...+++++......
T Consensus 100 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 170 (541)
T 1v25_A 100 HTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADP--------- 170 (541)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSCCCC---------
T ss_pred EecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCcccccHHHHhhccCCc---------
Confidence 34599999999999999999999999876321 123445555555421 233455554332211
Q ss_pred ccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHh--hhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEE
Q psy13808 86 KSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFI--GKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTV 163 (190)
Q Consensus 86 ~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~--~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv 163 (190)
....++++++|+|||||||.||||+++|+++....... ...+++.+ +|++++.+|++|.+++. .++.++..|++++
T Consensus 171 ~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~-~d~~l~~~p~~h~~~~~-~~~~~l~~G~~~v 248 (541)
T 1v25_A 171 VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSE-KDVVLPVVPMFHVNAWC-LPYAATLVGAKQV 248 (541)
T ss_dssp CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCT-TCEEEECSCTTSHHHHT-HHHHHHHHTCEEE
T ss_pred ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCC-CCEEEEeccchhhhHHH-HHHHHHhcCceEE
Confidence 23467899999999999999999999999998776542 34566777 99999999999999864 4678899999999
Q ss_pred EcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 164 VPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+.++.++++.+++.|+++++|+++++
T Consensus 249 ~~~~~~~~~~~~~~i~~~~~t~~~~~ 274 (541)
T 1v25_A 249 LPGPRLDPASLVELFDGEGVTFTAGV 274 (541)
T ss_dssp ECTTCCSHHHHHHHHHHTTCCEEEEC
T ss_pred eeCCCCCHHHHHHHHHhcCeeEEecc
Confidence 98556899999999999999999864
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.5e-25 Score=183.27 Aligned_cols=166 Identities=17% Similarity=0.137 Sum_probs=128.2
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCC----------CCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhh
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYK----------ADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQI 84 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~----------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (190)
|++||.++.+++.++++++++++++++.+... ...++..+.++.... ...+.++........ .
T Consensus 103 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~ 175 (539)
T 1mdb_A 103 VFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGE-AEEFLPLEDLHTEPV------K 175 (539)
T ss_dssp EECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESC-CTTSEEGGGCCCCCC------C
T ss_pred ecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCC-ccchhhhhhcccccc------c
Confidence 45599999999999999999999999875211 112345555544311 112222222111110 1
Q ss_pred hccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHH-HHHHHHHhCCEEE
Q psy13808 85 SKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAM-GILNAMNHGSTTV 163 (190)
Q Consensus 85 ~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~-~~~~~l~~G~~vv 163 (190)
.....++|+++|+|||||||.||||+++|+++.+........+++.+ +|++++.+|++|.+++.. .++.++..|++++
T Consensus 176 ~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~-~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 176 LPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDH-STVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCT-TCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred cCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCC-CCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 13457899999999999999999999999999998887777788887 999999999999999764 6889999999999
Q ss_pred EcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 164 VPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+. +.++++.+++.|+++++|++.++
T Consensus 255 ~~-~~~~~~~~~~~i~~~~~t~~~~~ 279 (539)
T 1mdb_A 255 LS-PSPSPDDAFPLIEREKVTITALV 279 (539)
T ss_dssp EC-SSSSHHHHHHHHHHHTCSEEEEC
T ss_pred EC-CCCCHHHHHHHHHHcCCeEEEcc
Confidence 98 67999999999999999998764
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-24 Score=180.68 Aligned_cols=167 Identities=17% Similarity=0.167 Sum_probs=128.8
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCCC----------CCCCCCCcEEEEeec--CcccHHHHHhcCCCcchhhhhh
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAYK----------ADALPTKLTRLALRM--GTFRLSDIMQGAGPEYHRRREQ 83 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~----------~~~~~~~~~~i~~~~--~~~~~~~l~~~~~~~~~~~~~~ 83 (190)
++||.++.+++.+++++++|++++++..... ....+....++.... ....+.++.........
T Consensus 109 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 183 (544)
T 3o83_A 109 NALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPAETFV----- 183 (544)
T ss_dssp ECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTTSEEHHHHHHSCCSSCC-----
T ss_pred cCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCccccchhhhhhccccccc-----
Confidence 3599999999999999999999999876321 112233444444311 22344555443322111
Q ss_pred hhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHH-HHHHHHHhCCEE
Q psy13808 84 ISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAM-GILNAMNHGSTT 162 (190)
Q Consensus 84 ~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~-~~~~~l~~G~~v 162 (190)
......++++++|+|||||||.||||+++|+++.+........+++.+ +|++++.+|++|.+++.. .++.++..|+++
T Consensus 184 ~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~-~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~ 262 (544)
T 3o83_A 184 DFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNS-NTRLLCALPAPHNFMLSSPGALGVLHAGGCV 262 (544)
T ss_dssp CCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCT-TCEEEECSCTTSHHHHHSSHHHHHHHTTCEE
T ss_pred ccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCC-CCeEEEecCcceEeecchHHHHHHHHcCCEE
Confidence 013457899999999999999999999999999999888888889988 999999999999998664 578899999999
Q ss_pred EEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 163 VVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 163 v~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
++. +++++..+++.|+++++|++.++
T Consensus 263 v~~-~~~~~~~~~~~i~~~~~t~~~~~ 288 (544)
T 3o83_A 263 VMA-PNPEPLNCFSIIQRHQVNMASLV 288 (544)
T ss_dssp EEC-SSCCHHHHHHHHHHHTCCEEEEC
T ss_pred EEC-CCCCHHHHHHHHHHHCCCEEEec
Confidence 999 68999999999999999998864
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=99.92 E-value=5e-25 Score=183.85 Aligned_cols=166 Identities=20% Similarity=0.206 Sum_probs=131.9
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCC----CCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCC
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYK----ADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNC 90 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 90 (190)
|++||.++.+++.++++++++++++++..... .........++........+.+++........ .....+
T Consensus 105 vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 178 (549)
T 3g7s_A 105 VPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNSLSEVMDSGSEDFE------NVKVNP 178 (549)
T ss_dssp EECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETCSSSCHHHHHHHSCSCCC------CCCCCT
T ss_pred EccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCCCCcCHHHHHhcCccccc------cccCCC
Confidence 34599999999999999999999999876322 01112244455544455667777665433211 122334
Q ss_pred -CCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCC
Q psy13808 91 -RDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSF 169 (190)
Q Consensus 91 -~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~ 169 (190)
+|+++|+|||||||.||||+++|+++.+........+++.+ +|++++.+|++|.+++.. ++.++..|+++++. +.+
T Consensus 179 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~-~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~-~~~ 255 (549)
T 3g7s_A 179 EEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSH-MDTIVGCMPMFHSAEFGL-VNLMVTVGNEYVVM-GMF 255 (549)
T ss_dssp TTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCT-TCEEECCSCTTSHHHHHH-HTTHHHHCCEEEEE-SSC
T ss_pred CCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCC-CCEEEEeCcHHHHHHHHH-HHHHHhcCceEEEc-CCC
Confidence 89999999999999999999999999999888888888887 999999999999999766 78899999999999 689
Q ss_pred ChHHHHHHHHHCCceEEecc
Q psy13808 170 KPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 170 ~~~~~~~~i~~~~iT~l~~t 189 (190)
+++.+++.|+++++|+++++
T Consensus 256 ~~~~~~~~i~~~~~t~~~~~ 275 (549)
T 3g7s_A 256 NQEMLAENIEKYKGTFSWAV 275 (549)
T ss_dssp CHHHHHHHHHHTTCCEEEEC
T ss_pred CHHHHHHHHHHhCCeEEEeC
Confidence 99999999999999998764
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-24 Score=182.05 Aligned_cols=172 Identities=19% Similarity=0.143 Sum_probs=124.2
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCC-----CCCCCCCcEEEEee-----cCcccHHHHHhcCCCcchhhhh-h
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYK-----ADALPTKLTRLALR-----MGTFRLSDIMQGAGPEYHRRRE-Q 83 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~~~~~~~~i~~~-----~~~~~~~~l~~~~~~~~~~~~~-~ 83 (190)
|++||.++.+++.++++++++++++++.+... ....+....++.+. .+..++.+++............ .
T Consensus 103 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (550)
T 3rix_A 103 APANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFV 182 (550)
T ss_dssp EECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBCBHHHHHHHHCCTTCCTTTCC
T ss_pred eecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccccCcccHHHHhhccccccccccccC
Confidence 34599999999999999999999999987332 12345566666541 2344566665443221110000 0
Q ss_pred hhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCC
Q psy13808 84 ISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGS 160 (190)
Q Consensus 84 ~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~ 160 (190)
+.....++++++|+|||||||.||||+++|+++.......... .++.+ ++++++.+|++|.+|+. .++.++..|+
T Consensus 183 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~g~~-~~~~~l~~G~ 260 (550)
T 3rix_A 183 PESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIP-DTAILSVVPFHHGFGMF-TTLGYLICGF 260 (550)
T ss_dssp CCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCT-TCEEEECSCTTSHHHHH-HHHHHHHHTC
T ss_pred CCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCC-CcEEEEechHHHHHHHH-HHHHHHHcCC
Confidence 1122345789999999999999999999999999877665544 45666 99999999999999964 5788999999
Q ss_pred EEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 161 TTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 161 ~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
++++. ++++++.+++.|+++++|+++++
T Consensus 261 ~~~~~-~~~~~~~~~~~i~~~~~t~~~~~ 288 (550)
T 3rix_A 261 RVVLM-YRFEEELFLRSLQDYKIQSALLV 288 (550)
T ss_dssp EEEEC-SSCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEe-CCCCHHHHHHHHHHcCCeEEEeC
Confidence 99999 78999999999999999998764
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=180.72 Aligned_cols=167 Identities=20% Similarity=0.219 Sum_probs=126.3
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCCC-----CCCCCCcEEEEeecC-----cccHHHHHhcCCCcchhhhhhh
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYKA-----DALPTKLTRLALRMG-----TFRLSDIMQGAGPEYHRRREQI 84 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~-----~~~~~~~~~i~~~~~-----~~~~~~l~~~~~~~~~~~~~~~ 84 (190)
|++||.++.+++.+++++++++++|++...... ...+....++.+... ...+++++.........
T Consensus 105 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 179 (548)
T 2d1s_A 105 APTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQ----- 179 (548)
T ss_dssp EEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCBTTBCBHHHHHHHTSCTTCC-----
T ss_pred eccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccccccccHHHHHhcCccccCC-----
Confidence 344999999999999999999999999873221 122334444444211 23466666543211000
Q ss_pred hccCC-----C-CCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHH
Q psy13808 85 SKSLN-----C-RDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNA 155 (190)
Q Consensus 85 ~~~~~-----~-~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~ 155 (190)
..... + +++++|+|||||||.||||+++|+++.+........ +++.+ +|++++.+|++|.+|+...++.+
T Consensus 180 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~-~d~~l~~~p~~h~~g~~~~~~~~ 258 (548)
T 2d1s_A 180 ASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSP-GTAVLTVVPFHHGFGMFTTLGYL 258 (548)
T ss_dssp GGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCT-TCEEEECSCTTSHHHHHHHHHHH
T ss_pred cccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCc-cceEEEeccHHHHHHHHHHHHHH
Confidence 11122 4 899999999999999999999999999887766655 57776 99999999999999976656777
Q ss_pred HHhCCEEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 156 MNHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 156 l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+ .|+++++. ++++++.+++.|+++++|+++++
T Consensus 259 l-~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~ 290 (548)
T 2d1s_A 259 I-CGFRVVML-TKFDEETFLKTLQDYKCTSVILV 290 (548)
T ss_dssp H-TTCEEEEC-CCCCHHHHHHHHHHTTEEEEEEC
T ss_pred h-cCcEEEEc-CCCCHHHHHHHHHHcCCcEEEec
Confidence 7 99999999 68999999999999999999864
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=185.02 Aligned_cols=167 Identities=16% Similarity=0.148 Sum_probs=128.0
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCCCC--------------CCC--CCCcEEEEeec----------CcccHHHH
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAYKA--------------DAL--PTKLTRLALRM----------GTFRLSDI 69 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~--------------~~~--~~~~~~i~~~~----------~~~~~~~l 69 (190)
+++|.++++++.+++++++|+++|++...... ... +....++++.. ....|+++
T Consensus 161 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~ 240 (652)
T 1pg4_A 161 VIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDL 240 (652)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEEHHHH
T ss_pred ecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCCCceeHHHH
Confidence 44999999999999999999999998763210 111 23455555421 12346666
Q ss_pred HhcCCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHH-HhhhhcCCcCCCcEEEEeCCchhHHHH
Q psy13808 70 MQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSN-FIGKRLEFDKTDHKILLQVPMFHTFGT 148 (190)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~-~~~~~~~~~~~~~~~l~~~pl~h~~g~ 148 (190)
+....... ......++|+++|+|||||||+||||+++|++++.... .....+++.+ +|++++..|++|..|.
T Consensus 241 ~~~~~~~~------~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~-~d~~l~~~~~~~~~g~ 313 (652)
T 1pg4_A 241 IEKASPEH------QPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHP-GDIYWCTADVGWVTGH 313 (652)
T ss_dssp HTTSCSCC------CCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCT-TCEEEECSCTTSHHHH
T ss_pred HhhcCCCC------CccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCC-CCEEEEccCCeeeech
Confidence 65432211 12335689999999999999999999999999887653 4455678887 9999999999999997
Q ss_pred HHHHHHHHHhCCEEEEcCC---CCChHHHHHHHHHCCceEEecc
Q psy13808 149 AMGILNAMNHGSTTVVPAP---SFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 149 ~~~~~~~l~~G~~vv~~~~---~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.+.++.+|..|+++++.++ .+++..+++.|+++++|+++++
T Consensus 314 ~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~ 357 (652)
T 1pg4_A 314 SYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTA 357 (652)
T ss_dssp HHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeC
Confidence 6778999999999999853 2699999999999999999864
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-24 Score=177.56 Aligned_cols=173 Identities=20% Similarity=0.160 Sum_probs=123.9
Q ss_pred ccccCCCCCCccchhhhhhccCCCCCCCCCCCCCCC----CCCCCcEEEEe--ecC------cccHHHHHhcCCCcchhh
Q psy13808 13 DRIGESQPFRERTLSHQDKIRPGRESNPRPSAYKAD----ALPTKLTRLAL--RMG------TFRLSDIMQGAGPEYHRR 80 (190)
Q Consensus 13 ~~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~----~~~~~~~~i~~--~~~------~~~~~~l~~~~~~~~~~~ 80 (190)
..|++||.++++++.++++++++++++++.+..... ........... ... ...+.......... ...
T Consensus 74 v~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 152 (501)
T 3ipl_A 74 EIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPK-ESP 152 (501)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC---------------------------------CCH
T ss_pred EEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccccchhhcccc-CCc
Confidence 346679999999999999999999999987733211 01111111110 000 00000000000000 001
Q ss_pred hhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCC
Q psy13808 81 REQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGS 160 (190)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~ 160 (190)
........+++|+++|+|||||||.||||+++|+++.+........+++.+ +|++++.+|++|.+|+.. ++.++..|+
T Consensus 153 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~-~d~~l~~~p~~~~~g~~~-~~~~l~~G~ 230 (501)
T 3ipl_A 153 SNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDR-DTNWLSVLPIYHISGLSV-LLRAVIEGF 230 (501)
T ss_dssp HHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCT-TCEEEECSCTTSHHHHHH-HHHHHHHTC
T ss_pred ccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCc-cCEEEEeCcHHHHHHHHH-HHHHHHcCc
Confidence 111223467899999999999999999999999999999888888888887 999999999999999655 788999999
Q ss_pred EEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 161 TTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 161 ~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
++++. ++++++.+++.|+++++|+++++
T Consensus 231 ~~~~~-~~~~~~~~~~~i~~~~~t~~~~~ 258 (501)
T 3ipl_A 231 TVRIV-DKFNAEQILTMIKNERITHISLV 258 (501)
T ss_dssp EEEEC-SSCCHHHHHHHHHHSCCCEEEEC
T ss_pred eEEeC-CCCCHHHHHHHHHHcCCcEEEch
Confidence 99999 68999999999999999999864
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-24 Score=180.10 Aligned_cols=167 Identities=16% Similarity=0.183 Sum_probs=124.6
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCC-----CCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCC
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYK-----ADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLN 89 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 89 (190)
|++||.++.+++.++++++++++++++.+... ...++....++.+..+...+.++........ .......
T Consensus 84 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 158 (509)
T 3ivr_A 84 LPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAPFKDLASDTP-----FSAPEFG 158 (509)
T ss_dssp EECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCSSCEEGGGTCCCSC-----CCCCCCC
T ss_pred EecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCcChhhHhhccCCCC-----CCcCCCC
Confidence 44599999999999999999999999987322 1334455555554333233333333111111 1124567
Q ss_pred CCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCC
Q psy13808 90 CRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSF 169 (190)
Q Consensus 90 ~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~ 169 (190)
++|+++|+|||||||.||||+++|+++.+........+++.+ +|++++.+|++|.+|+.. .+.++..|++.++. ..+
T Consensus 159 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~-~d~~l~~~p~~~~~g~~~-~~~~~~~~g~~~~~-~~~ 235 (509)
T 3ivr_A 159 AADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTE-ADVNLGMLPLFHVTGLGL-MLTLQQAGGASVIA-AKF 235 (509)
T ss_dssp TTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCT-TCEEEECSCTTSHHHHHH-HHHHHHHTCEEEEC-SSC
T ss_pred ccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCC-CcEEEEeCCCcchhHHHH-HHHHHHhCCcEEEe-ccc
Confidence 899999999999999999999999999999888888889988 999999999999999665 45555556666666 489
Q ss_pred ChHHHHHHHHHCCceEEecc
Q psy13808 170 KPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 170 ~~~~~~~~i~~~~iT~l~~t 189 (190)
+++.+++.|+++++|++.++
T Consensus 236 ~~~~~~~~i~~~~~t~~~~~ 255 (509)
T 3ivr_A 236 DPAQAARDIEAHKVTVMAEF 255 (509)
T ss_dssp CHHHHHHHHHHHTCCEEEEE
T ss_pred CHHHHHHHHHHHCCcEEEec
Confidence 99999999999999998753
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-24 Score=178.67 Aligned_cols=165 Identities=19% Similarity=0.207 Sum_probs=121.8
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCC-----CCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCC
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYK-----ADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLN 89 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 89 (190)
|++||.++.+++.++++++++++++++..... ....+....++.. .....+.+.+....... ......
T Consensus 96 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~ 168 (517)
T 3r44_A 96 VPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDW-IGADSLAERLRSAAADE------PAVECG 168 (517)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEE-EEHHHHHHHHHHCCCCC------CCCCCC
T ss_pred EecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEc-cCcccHHHHhhccCcCC------CCCCCC
Confidence 34599999999999999999999999876221 0111112211111 11123444443322211 123457
Q ss_pred CCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCC
Q psy13808 90 CRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSF 169 (190)
Q Consensus 90 ~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~ 169 (190)
++|+++|+|||||||.||||+++|+++.+........+++.+ +|++++.+|++|..++...++ +++.|+++++. +.+
T Consensus 169 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~-~d~~l~~~p~~~~~~~~~~~~-~~~~G~~~v~~-~~~ 245 (517)
T 3r44_A 169 GDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRY-RDRLLLPLPMFHVAALTTVIF-SAMRGVTLISM-PQF 245 (517)
T ss_dssp TTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCT-TCEEEECSCTTSHHHHHHHHH-HHHHTCEEEEC-SSC
T ss_pred CCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCC-CCEEEEeCchHHHHHHHHHHH-HHhcCeEEEEe-CCC
Confidence 899999999999999999999999999999888888888888 999999999999999765444 45599999998 789
Q ss_pred ChHHHHHHHHHCCceEEecc
Q psy13808 170 KPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 170 ~~~~~~~~i~~~~iT~l~~t 189 (190)
++..+++.++++++|++.++
T Consensus 246 ~~~~~~~~i~~~~~t~~~~~ 265 (517)
T 3r44_A 246 DATKVWSLIVEERVCIGGAV 265 (517)
T ss_dssp CHHHHHHHHHHTTCCEEEEC
T ss_pred CHHHHHHHHHHhCCeEEEeH
Confidence 99999999999999998764
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-24 Score=178.05 Aligned_cols=158 Identities=18% Similarity=0.234 Sum_probs=126.3
Q ss_pred cccccCCCCCCccchhhhhhccCCCCCCCCCCCCCCCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCC
Q psy13808 12 EDRIGESQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCR 91 (190)
Q Consensus 12 ~~~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (190)
+..|++||.++.+++.++++++++++++++.+............+.. ... ..... .....+++
T Consensus 93 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~---------~~~~~-------~~~~~~~~ 155 (505)
T 3nyq_A 93 VAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALERVDV-DVR---------ARGAV-------PEDGADDG 155 (505)
T ss_dssp CCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCCGGGTTSEEEEC-CTT---------CCCCC-------CCCCCCTT
T ss_pred CEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccchhhcccccccc-ccc---------cccCC-------CCCCCCCC
Confidence 44678899999999999999999999999876322222222222211 100 00000 12345789
Q ss_pred CeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCCh
Q psy13808 92 DGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKP 171 (190)
Q Consensus 92 ~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~ 171 (190)
|+++|+|||||||.||||+++|+++.+........+++.+ +|++++.+|++|..|+.+.++.++..|+++++. +++++
T Consensus 156 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~-~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~-~~~~~ 233 (505)
T 3nyq_A 156 DPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTG-EDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHL-GRFST 233 (505)
T ss_dssp SEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCT-TCEEEECCCTTSHHHHTTTTHHHHHHTCEEEEC-SSCCH
T ss_pred CeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCC-CcEEEEeccHHHHHHHHHHHHHHHhcCCEEEEC-CCCCh
Confidence 9999999999999999999999999999888888888887 999999999999999877789999999999999 78999
Q ss_pred HHHHHHHHHCCceEEecc
Q psy13808 172 MDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 172 ~~~~~~i~~~~iT~l~~t 189 (190)
+.+++.+ ++++|+++++
T Consensus 234 ~~~~~~i-~~~~t~~~~~ 250 (505)
T 3nyq_A 234 EGAAREL-NDGATMLFGV 250 (505)
T ss_dssp HHHHHHH-TTTCCEEEEC
T ss_pred HHHHHHH-hhCCeEEEeh
Confidence 9999999 8999998764
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.2e-24 Score=177.07 Aligned_cols=167 Identities=13% Similarity=0.135 Sum_probs=127.8
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCC-----CCCCCCCcEEEEeec----CcccHHHHHhcCCCcchhhhhhhh
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYK-----ADALPTKLTRLALRM----GTFRLSDIMQGAGPEYHRRREQIS 85 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~~~~~~~~i~~~~----~~~~~~~l~~~~~~~~~~~~~~~~ 85 (190)
|++||.++.+++.+++++++++++|++.+... ....+.++.++.+.. +...+.+++....... ..
T Consensus 127 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 200 (570)
T 3c5e_A 127 MPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNEASTTH------HC 200 (570)
T ss_dssp EECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCCTTSEEHHHHHHHSCSCC------CC
T ss_pred EecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCccccccHHHHhhcccccc------cc
Confidence 34499999999999999999999999876322 123455555555422 3345666665432211 01
Q ss_pred ccCCCCCeEEEEecCCCCCCCceeEechHHHHH-HHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 86 KSLNCRDGINIQFTSGTTGHPKAAFLTHYNLIN-NSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 86 ~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~-~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
....++|+++|+|||||||.||||+++|+.+.. ..... ..+++.+ +|++++..|++|..++...++.++..|+++++
T Consensus 201 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~~~~~-~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~ 278 (570)
T 3c5e_A 201 VETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWTGLQA-SDIMWTISDTGWILNILCSLMEPWALGACTFV 278 (570)
T ss_dssp CCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTTSCCT-TCEEEECCCTTSHHHHHHTTHHHHHHTCEEEE
T ss_pred cCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhcCCCC-CceEEEcCchHHHHHHHHHHHHHHHhCceEEE
Confidence 335689999999999999999999999994332 33333 6677877 99999999999999977678899999999999
Q ss_pred cCC-CCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAP-SFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~-~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.+. .+++..+++.|+++++|+++++
T Consensus 279 ~~~~~~~~~~~~~~i~~~~~t~~~~~ 304 (570)
T 3c5e_A 279 HLLPKFDPLVILKTLSSYPIKSMMGA 304 (570)
T ss_dssp ECCSSCCHHHHHHHHHHSCCCEEEEC
T ss_pred ecCCCCCHHHHHHHHHHhCCeEEecc
Confidence 843 7899999999999999999864
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-24 Score=178.99 Aligned_cols=162 Identities=19% Similarity=0.234 Sum_probs=118.1
Q ss_pred cCCCCCCccchhhhhhccCCCCCCC--CCCCCCC--CCCCCCcEEEEeecCcccHHHHHhcCCCcc-hhhhhhhhccCCC
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNP--RPSAYKA--DALPTKLTRLALRMGTFRLSDIMQGAGPEY-HRRREQISKSLNC 90 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~--~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~ 90 (190)
++||.++.+++.+++++++++++++ +.+.... ...+..+ ++ .+++++....... ... .......+
T Consensus 83 pl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~--~~~~~~~~ 152 (504)
T 1t5h_X 83 LLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-II-------FLGDLVRDGEPYSYGPP--IEDPQREP 152 (504)
T ss_dssp EECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCCCCE-EE-------EGGGTEETTEECCCSCC--CCCCCCCT
T ss_pred ecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccccce-eE-------EecchhhcCcccccCCc--cCCCCCCC
Confidence 3499999999999999999999999 5442110 1112222 22 2333332210000 000 00134578
Q ss_pred CCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCC--cCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCC
Q psy13808 91 RDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEF--DKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPS 168 (190)
Q Consensus 91 ~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~--~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~ 168 (190)
+++++|+|||||||.||||+++|+++.+........+++ .+ ++++++.+|++|.+|+...++.++..|+++++. +.
T Consensus 153 ~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~ 230 (504)
T 1t5h_X 153 AQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGR-HNVVLGLMPLYHVVGFFAVLVAALALDGTYVVV-EE 230 (504)
T ss_dssp TSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSST-TCEEEECSCTTSHHHHTTTHHHHHHTTCEEEEC-SS
T ss_pred CCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCC-CceEEeecchhhcchHHHHHHHHHHcCceEEeC-CC
Confidence 999999999999999999999999999888777777777 65 899999999999999766688999999999999 67
Q ss_pred CChHHHHHHHHHCCceEEecc
Q psy13808 169 FKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 169 ~~~~~~~~~i~~~~iT~l~~t 189 (190)
+++..+++.|+++++|+++++
T Consensus 231 ~~~~~~~~~i~~~~~t~~~~~ 251 (504)
T 1t5h_X 231 FRPVDALQLVQQEQVTSLFAT 251 (504)
T ss_dssp CCHHHHHHHHHHHTCCEEECC
T ss_pred CCHHHHHHHHHHhCCeEEEeC
Confidence 999999999999999999864
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.6e-25 Score=182.31 Aligned_cols=166 Identities=22% Similarity=0.268 Sum_probs=126.5
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCCCC----CCCCCcEEEEe---ecCcccHHHHHhcCCCcchhhhhhhhcc
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYKAD----ALPTKLTRLAL---RMGTFRLSDIMQGAGPEYHRRREQISKS 87 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~----~~~~~~~~i~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 87 (190)
|++||.++.+++.++++++++++++++....... ..... .++.+ ..+...+.++........ ....
T Consensus 102 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 174 (536)
T 3ni2_A 102 TAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDV-KVMCVDSAPDGCLHFSELTQADENEA------PQVD 174 (536)
T ss_dssp EECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTC-EEEESSCCCTTCEETHHHHTSCGGGC------CCCC
T ss_pred eccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCc-eEEEecCCCCCccCHHHHhhcccccc------ccCC
Confidence 3449999999999999999999999987633210 00112 23332 223345565554332111 1234
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhh----hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGK----RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTV 163 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~----~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv 163 (190)
..++|+++|+|||||||.||||+++|+++.+....... .+++.+ +|++++.+|++|.+++...++.++..|++++
T Consensus 175 ~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~-~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v 253 (536)
T 3ni2_A 175 ISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHS-EDVILCVLPMFHIYALNSIMLCGLRVGAPIL 253 (536)
T ss_dssp CCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCT-TCCEEECSCTTSHHHHHHTHHHHHHHTCCEE
T ss_pred CCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCC-CCEEEEecChHHHHHHHHHHHHHHhcCCEEE
Confidence 67899999999999999999999999999887665433 345666 9999999999999998777889999999999
Q ss_pred EcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 164 VPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+. +++++..+++.++++++|++.++
T Consensus 254 ~~-~~~~~~~~~~~i~~~~~t~~~~~ 278 (536)
T 3ni2_A 254 IM-PKFEIGSLLGLIEKYKVSIAPVV 278 (536)
T ss_dssp EC-SSCCHHHHHHHHHHHTCCEEEEC
T ss_pred Ec-CCCCHHHHHHHHHHhCCeEEEcc
Confidence 99 78999999999999999998764
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=173.63 Aligned_cols=160 Identities=14% Similarity=0.185 Sum_probs=125.1
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCCCCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCCCeE
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDGI 94 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (190)
|++||.++.+++.++++++++++++++........ ..... ...+.++......... ......+++++
T Consensus 80 vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~-----~~~~~~~~~~a 146 (511)
T 3e7w_A 80 IPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAV-GQQIQ-------TVSAEELLENEGGSVS-----QDQWVKEHETF 146 (511)
T ss_dssp EEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCC-CCSSC-------EEEHHHHHTSCSCCCC-----GGGSCCTTSEE
T ss_pred EecCCCChHHHHHHHHHhCCCCEEEecccccchhc-ccccc-------eecHhhhhccccCCcc-----ccccCCCCCeE
Confidence 34489999999999999999999999765322111 11111 1234555543322211 12346789999
Q ss_pred EEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCC--CChH
Q psy13808 95 NIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPS--FKPM 172 (190)
Q Consensus 95 ~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~--~~~~ 172 (190)
+|+|||||||.||||+++|+++.+........+++.+ +|++++.+|++|..++ +.++.++..|+++++.+.. +++.
T Consensus 147 ~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~-~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~ 224 (511)
T 3e7w_A 147 YIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSG-GKIFLNQAPFSFDLSV-MDLYPCLQSGGTLHCVTKDAVNKPK 224 (511)
T ss_dssp EEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTT-TCEEEECSCTTSTHHH-HHHHHHHHTTCEEEECCHHHHHSHH
T ss_pred EEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCc-cceEEEeCCccHHHHH-HHHHHHHhcCCEEEEcChhhhcCHH
Confidence 9999999999999999999999999888888888887 9999999999999985 5589999999999998422 6999
Q ss_pred HHHHHHHHCCceEEecc
Q psy13808 173 DSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 173 ~~~~~i~~~~iT~l~~t 189 (190)
.+++.++++++|++.++
T Consensus 225 ~~~~~i~~~~~t~~~~~ 241 (511)
T 3e7w_A 225 VLFEELKKSGLNVWTST 241 (511)
T ss_dssp HHHHHHHHHCCSEEEEC
T ss_pred HHHHHHHHcCCcEEEec
Confidence 99999999999998764
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-24 Score=176.58 Aligned_cols=168 Identities=13% Similarity=0.187 Sum_probs=121.3
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCC-----CCCCCCC-cEEEEeecC------cccHHHHHhcCCCcchhhhh
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYK-----ADALPTK-LTRLALRMG------TFRLSDIMQGAGPEYHRRRE 82 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~~~~~-~~~i~~~~~------~~~~~~l~~~~~~~~~~~~~ 82 (190)
|++||.++.+++.++++++++++++++..... ....+.. ..+++.... ...+++++.......
T Consensus 101 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 175 (529)
T 2v7b_A 101 VVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAA----- 175 (529)
T ss_dssp EECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHTSCCCS-----
T ss_pred EecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhhhccCCCcc-----
Confidence 34499999999999999999999999876321 0112233 334433111 124566554322111
Q ss_pred hhhccCCCCCeEEEEecCCCCCCCceeEechHHH-HHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCE
Q psy13808 83 QISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNL-INNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGST 161 (190)
Q Consensus 83 ~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~-~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~ 161 (190)
......++|+++|+|||||||.||||+++|+++ ..........+++.+ +|++++.+|++|.+++...++.++..|++
T Consensus 176 -~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~-~d~~~~~~p~~~~~g~~~~~~~~l~~G~~ 253 (529)
T 2v7b_A 176 -KAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAE-NDVVFSAAKLFFAYGLGNGLTFPLSVGAT 253 (529)
T ss_dssp -SCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCT-TCEEEESSCTTSHHHHHHHTHHHHHHTCE
T ss_pred -cccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCC-CcEEEEeecHHHHHHHHHHHHHHHhcCcE
Confidence 123457899999999999999999999999999 566555555677777 99999999999999977667889999999
Q ss_pred EEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 162 TVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 162 vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+++.++.++++.+++.++++++|+++++
T Consensus 254 ~v~~~~~~~~~~~~~~i~~~~~t~~~~~ 281 (529)
T 2v7b_A 254 AILMAERPTADAIFARLVEHRPTVFYGV 281 (529)
T ss_dssp EECCCSCCCHHHHHHHHHHSCCSEEEEC
T ss_pred EEEecCCCCHHHHHHHHHHhCCEEEEec
Confidence 9988667899999999999999999864
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-23 Score=176.62 Aligned_cols=167 Identities=15% Similarity=0.129 Sum_probs=130.8
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCC----------CCCCCCCcEEEEe-ecCcccHHHHHhcCCCcchhhhhh
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYK----------ADALPTKLTRLAL-RMGTFRLSDIMQGAGPEYHRRREQ 83 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~----------~~~~~~~~~~i~~-~~~~~~~~~l~~~~~~~~~~~~~~ 83 (190)
|+++|.++.+++.++++++++++++++..... ....+....+... ......+.+.........
T Consensus 103 vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 176 (617)
T 3rg2_A 103 VLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPAEDF------ 176 (617)
T ss_dssp EEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCSTTBHHHHHHSCCSSC------
T ss_pred ccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccccchhhhhccccccc------
Confidence 44599999999999999999999999877331 0122344444443 222334555444332221
Q ss_pred hhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHH-HHHHHHHhCCEE
Q psy13808 84 ISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAM-GILNAMNHGSTT 162 (190)
Q Consensus 84 ~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~-~~~~~l~~G~~v 162 (190)
......++++++|+|||||||.||||+++|+++.+........+++.+ +|++++.+|++|.+++.. .++.++..|+++
T Consensus 177 ~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~ 255 (617)
T 3rg2_A 177 TATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQ-QTRYLCAIPAAHNYAMSSPGSLGVFLAGGTV 255 (617)
T ss_dssp CCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCT-TCEEEECSCTTSHHHHHSSHHHHHHHHTCEE
T ss_pred CCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCC-cceEEEeccchhhhhhhHHHHHHHHHcCCEE
Confidence 123456899999999999999999999999999999888888888887 999999999999998654 688999999999
Q ss_pred EEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 163 VVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 163 v~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
++. +.+++..+++.++++++|++.++
T Consensus 256 v~~-~~~~~~~~~~~i~~~~~t~~~~~ 281 (617)
T 3rg2_A 256 VLA-ADPSATLCFPLIEKHQVNVTALV 281 (617)
T ss_dssp EEC-SSCCHHHHHHHHHHTTCCEEEEC
T ss_pred EEe-CCCCHHHHHHHHHHhCCcEEEcc
Confidence 998 67899999999999999998764
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-23 Score=173.19 Aligned_cols=163 Identities=15% Similarity=0.181 Sum_probs=120.7
Q ss_pred cccCCCCCCccchhhhhhccCCCCCCCCCCCCCCCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCCCe
Q psy13808 14 RIGESQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDG 93 (190)
Q Consensus 14 ~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (190)
.|++||.++.+++.++++++++++++++...... .....+.. ...+.++........ ........++++
T Consensus 78 ~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~d~ 146 (512)
T 3fce_A 78 YIPVDLSIPADRVQRIAENSGAKLLLSATAVTVT----DLPVRIVS---EDNLKDIFFTHKGNT----PNPEHAVKGDEN 146 (512)
T ss_dssp EEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS----CCSSEEEE---THHHHHHHHHTTTCC----CCGGGSCCTTSE
T ss_pred EEeeCCCCcHHHHHHHHHhcCCCEEEecCccccc----ccccceec---hhhhhhhcccccccC----CCccccCCCCCe
Confidence 3455899999999999999999999998653221 11111221 112333322211111 011345678999
Q ss_pred EEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCC--CCh
Q psy13808 94 INIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPS--FKP 171 (190)
Q Consensus 94 ~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~--~~~ 171 (190)
++|+|||||||.||||+++|+++.+........+++.+ +|++++.+|++|..++ +.++.++..|+++++.++. +++
T Consensus 147 a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~-~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~ 224 (512)
T 3fce_A 147 FYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQT-GQVFLNQAPFSFDLSV-MDIYPSLVTGGTLWAIDKDMIARP 224 (512)
T ss_dssp EEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCS-SCEEEECSCTTSGGGH-HHHHHHHHTTCEEEECCHHHHHSH
T ss_pred EEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCC-CCEEEEeCCccHhHHH-HHHHHHHhCCCEEEECCHHHhhCH
Confidence 99999999999999999999999999888888889988 9999999999999985 5589999999999998422 799
Q ss_pred HHHHHHHHHCCceEEecc
Q psy13808 172 MDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 172 ~~~~~~i~~~~iT~l~~t 189 (190)
..+++.++++++|++.++
T Consensus 225 ~~~~~~i~~~~~t~~~~~ 242 (512)
T 3fce_A 225 KDLFASLEQSDIQVWTST 242 (512)
T ss_dssp HHHHHHHHHHCCCEEEEC
T ss_pred HHHHHHHHHcCCcEEEec
Confidence 999999999999998764
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.2e-24 Score=174.59 Aligned_cols=165 Identities=23% Similarity=0.265 Sum_probs=121.4
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCCCCC-C-CC-CcEEEEee-cCcccHHHHHhcCCCcchhhhhhhhccCCC
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYKADA-L-PT-KLTRLALR-MGTFRLSDIMQGAGPEYHRRREQISKSLNC 90 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~-~-~~-~~~~i~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 90 (190)
|++||.++.+++.++++++++++++++........ . .. ...+..+. .....+.+......... ......+
T Consensus 81 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 154 (503)
T 4fuq_A 81 LPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEAF------ATIDRGA 154 (503)
T ss_dssp EECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSCSHHHHHHHTSCSCC------CCCCCCT
T ss_pred EecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCcccccchhhhcCCCCc------CcCCCCC
Confidence 34599999999999999999999999976332110 0 00 01222221 11122222222211111 1234578
Q ss_pred CCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCC
Q psy13808 91 RDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFK 170 (190)
Q Consensus 91 ~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~ 170 (190)
+|+++|+|||||||.||||+++|+++.+........+++.+ +|++++.+|++|.+|+...++.++..|+++++. ++++
T Consensus 155 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~-~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~-~~~~ 232 (503)
T 4fuq_A 155 DDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTP-DDVLIHALPIYHTHGLFVASNVTLFARGSMIFL-PKFD 232 (503)
T ss_dssp TSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCT-TCEEEECSCSSSHCCCCCCHHHHHHTTCEEEEC-SSCC
T ss_pred CCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCC-CCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEc-CCCC
Confidence 99999999999999999999999999999888888889988 999999999999999766577889999999998 6899
Q ss_pred hHHHHHHHHHCCceEEecc
Q psy13808 171 PMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 171 ~~~~~~~i~~~~iT~l~~t 189 (190)
++.+++.++ ++|+++++
T Consensus 233 ~~~~~~~i~--~~t~~~~~ 249 (503)
T 4fuq_A 233 PDKILDLMA--RATVLMGV 249 (503)
T ss_dssp HHHHHHHHT--TCCEEEEC
T ss_pred HHHHHHHHh--hcCEEEEH
Confidence 999999998 78887753
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-23 Score=173.29 Aligned_cols=171 Identities=12% Similarity=0.029 Sum_probs=131.2
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCC--C-----CCCCCCC-cEEEEe----ecCcccHHHHHhcCCCcchhhhhh
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAY--K-----ADALPTK-LTRLAL----RMGTFRLSDIMQGAGPEYHRRREQ 83 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~--~-----~~~~~~~-~~~i~~----~~~~~~~~~l~~~~~~~~~~~~~~ 83 (190)
|+||.++++++.+++++++++++|++.+.. . ....+.. ..++.+ ..++.++.+.+......... +.
T Consensus 140 pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 217 (580)
T 3etc_A 140 PATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFER--PT 217 (580)
T ss_dssp ECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCCTTCEEHHHHHHHSCSCCCC--CC
T ss_pred eCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccccccccHHHHHhhCCccccc--Cc
Confidence 459999999999999999999999987633 1 1122333 334443 23455677666544332110 01
Q ss_pred hhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEE
Q psy13808 84 ISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTV 163 (190)
Q Consensus 84 ~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv 163 (190)
......++|+++|+|||||||.||||+++|.++...........++.+ ++++++..|++|..+....++.++..|++++
T Consensus 218 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 296 (580)
T 3etc_A 218 GEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVED-DGLHYTVADSGWGKCVWGKLYGQWIAGCAVF 296 (580)
T ss_dssp GGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCT-TCEEEECCCTTSTHHHHHTTHHHHHTTCEEE
T ss_pred cccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCC-CceEEEeCChHHHHHHHHHHHHHHhCCcEEE
Confidence 113467899999999999999999999999999887777666778887 9999999999999886666788999999999
Q ss_pred EcC-CCCChHHHHHHHHHCCceEEecc
Q psy13808 164 VPA-PSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 164 ~~~-~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+.+ ++++++.+++.|+++++|+++++
T Consensus 297 ~~~~~~~~~~~~~~~i~~~~vt~~~~~ 323 (580)
T 3etc_A 297 VYDYDRFEAKNMLEKASKYGVTTFCAP 323 (580)
T ss_dssp EEECSSCCHHHHHHHHHHHTCCEEEEC
T ss_pred EecCCCCCHHHHHHHHHHHCCeEEEcc
Confidence 874 57999999999999999999864
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-23 Score=170.94 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=109.2
Q ss_pred CCC---CCCccchhhhhhccCCCCCCCCCCCCC-----CCCCCCC--cEEEEeecCcccHHHHHhcCCCcchhhhhhhhc
Q psy13808 17 ESQ---PFRERTLSHQDKIRPGRESNPRPSAYK-----ADALPTK--LTRLALRMGTFRLSDIMQGAGPEYHRRREQISK 86 (190)
Q Consensus 17 i~p---~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (190)
+|+ .++.+++.+++++++++++|++..... ....+.. ..++.. +.+..... . .....
T Consensus 112 l~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~-----~~~~~ 178 (480)
T 3t5a_A 112 LSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEV-------DLLDLDAP-N-----GYTFK 178 (480)
T ss_dssp ECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEG-------GGSCTTCC---------CCC
T ss_pred eCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEe-------cccccccc-c-----CCCCC
Confidence 377 788999999999999999999987322 1111111 122221 11101000 0 01123
Q ss_pred cCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcC-----CCcEEEEeCCchhHHHHHHHHHHHHHhCCE
Q psy13808 87 SLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDK-----TDHKILLQVPMFHTFGTAMGILNAMNHGST 161 (190)
Q Consensus 87 ~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~-----~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~ 161 (190)
...++++++|+|||||||.||||+++|+++.+++......+++.. ++|++++.+|++|.+|+.+.++.++..|++
T Consensus 179 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~ 258 (480)
T 3t5a_A 179 EDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYP 258 (480)
T ss_dssp CSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCC
T ss_pred CCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCc
Confidence 457899999999999999999999999999988877766665543 279999999999999988788999999999
Q ss_pred EEEcCCC---CChHHHHHHHHHCCceEE
Q psy13808 162 TVVPAPS---FKPMDSLRAIAKEKCMEY 186 (190)
Q Consensus 162 vv~~~~~---~~~~~~~~~i~~~~iT~l 186 (190)
+++.++. ++++.+++.++++++|+.
T Consensus 259 ~v~~~~~~~~~~~~~~~~~i~~~~~t~~ 286 (480)
T 3t5a_A 259 AVLTSPVSFLQRPARWMHLMASDFHAFS 286 (480)
T ss_dssp EEECCHHHHHHCTHHHHHHTTSSSEEEE
T ss_pred eEEECHHHHHHCHHHHHHHHHhhceeEe
Confidence 9998432 499999999999999943
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-23 Score=183.91 Aligned_cols=169 Identities=21% Similarity=0.273 Sum_probs=125.8
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCCCCCC-C--CCCcEEEEee--------cCcccHHHHHhcCCCcchhhhhhh
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAYKADA-L--PTKLTRLALR--------MGTFRLSDIMQGAGPEYHRRREQI 84 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~-~--~~~~~~i~~~--------~~~~~~~~l~~~~~~~~~~~~~~~ 84 (190)
++||.++++++.+++++++++++|++........ . .....++.++ .+...+.++........ ....
T Consensus 142 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 218 (979)
T 3tsy_A 142 AANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEAS---EVID 218 (979)
T ss_dssp EECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTTSCCCTTEEEGGGTSSCCSGGG---GGSC
T ss_pred eeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcccccCCcccccHHHHhhcccccc---ccCC
Confidence 3499999999999999999999999987433110 0 0111233321 12233444443322111 0112
Q ss_pred hccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhh----hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCC
Q psy13808 85 SKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGK----RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGS 160 (190)
Q Consensus 85 ~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~----~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~ 160 (190)
.....++|+++|+|||||||.||||+++|+++.+....... .+++.+ +|++++.+|++|.+++...++.++..|+
T Consensus 219 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~-~d~~l~~~p~~h~~~~~~~~~~~l~~G~ 297 (979)
T 3tsy_A 219 SVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHS-DDVILCVLPMFHIYALNSIMLCGLRVGA 297 (979)
T ss_dssp CSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCS-SCEEEECSCSSSHHHHHHTHHHHHHHTC
T ss_pred cCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCC-CCEEEEECchHHHHHHHHHHHHHHhcCc
Confidence 23467899999999999999999999999999987765433 345666 9999999999999998777889999999
Q ss_pred EEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 161 TTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 161 ~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
++++. ++++++.+++.|+++++|++.++
T Consensus 298 ~~v~~-~~~~~~~~~~~i~~~~~t~~~~~ 325 (979)
T 3tsy_A 298 AILIM-PKFEINLLLELIQRCKVTVAPMV 325 (979)
T ss_dssp EEEEC-SSCCHHHHHHHHHHHTCCEEEEC
T ss_pred EEEEe-CCCCHHHHHHHHHHhCCeEEEcH
Confidence 99999 78999999999999999998764
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=8e-23 Score=171.15 Aligned_cols=161 Identities=13% Similarity=0.104 Sum_probs=116.3
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCC-CCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCCCe
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYK-ADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDG 93 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (190)
|++||.++.+++.++++++++++++++..... .........+....... + ....... ......++|+
T Consensus 117 vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~-------~~~~~~~~d~ 184 (563)
T 1amu_A 117 VPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDT--I---KIREGTN-------LHVPSKSTDL 184 (563)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCST--T---TTSCCSC-------CCCCCCTTSE
T ss_pred EEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccccCceeeecchh--h---ccccCcc-------CCCCCCCCCe
Confidence 44599999999999999999999999876221 11111122232221110 0 0000000 1123467899
Q ss_pred EEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCC--CCh
Q psy13808 94 INIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPS--FKP 171 (190)
Q Consensus 94 ~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~--~~~ 171 (190)
++|+|||||||.||||+++|+++.+........+++.+ +|++++..|++|..++ +.++.++..|+++++.+.. +++
T Consensus 185 a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~-~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~~~~~~~ 262 (563)
T 1amu_A 185 AYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTE-KDRIGQFASISFDASV-WEMFMALLTGASLYIILKDTINDF 262 (563)
T ss_dssp EEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCT-TCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECCHHHHTCH
T ss_pred EEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCC-CCEEEEeCCccHHHHH-HHHHHHHHCCCEEEEcChHhhcCH
Confidence 99999999999999999999999988877777788887 9999999999999885 4578899999999998422 799
Q ss_pred HHHHHHHHHCCceEEecc
Q psy13808 172 MDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 172 ~~~~~~i~~~~iT~l~~t 189 (190)
..+++.++++++|++.++
T Consensus 263 ~~~~~~i~~~~~t~~~~~ 280 (563)
T 1amu_A 263 VKFEQYINQKEITVITLP 280 (563)
T ss_dssp HHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHcCCcEEEeC
Confidence 999999999999998764
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.7e-23 Score=171.76 Aligned_cols=157 Identities=16% Similarity=0.113 Sum_probs=117.0
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCCCCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCCCeE
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDGI 94 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (190)
|++||.++.+++.++++++++++++++..... .++....++..... ....... .......++|++
T Consensus 153 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~-------~~~~~~~------~~~~~~~~~d~a 217 (570)
T 4gr5_A 153 TMLDPQFPVERLALSLEDTGAPLLVTSRPLSG--RLTGTTTLYVEDEA-------ASDAPAG------NLATGVGPEDVA 217 (570)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECTTTTT--SSCSSEEEECCC--------------CC------CCCCCCCTTSEE
T ss_pred EEcCCCChHHHHHHHHHhcCCCEEEecchhhh--cccCCcceeeeccc-------ccccccc------ccCCCCCCCCeE
Confidence 44599999999999999999999999976332 22333322221100 0000000 112346789999
Q ss_pred EEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCC-CCChHH
Q psy13808 95 NIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAP-SFKPMD 173 (190)
Q Consensus 95 ~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~-~~~~~~ 173 (190)
+|+|||||||.||||+++|+++.+.... ...+++.+ +|++++.+|++|..+ .+.++.++..|+++++.+. .+++..
T Consensus 218 ~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~-~d~~l~~~p~~~~~~-~~~~~~~l~~G~~~v~~~~~~~~~~~ 294 (570)
T 4gr5_A 218 CVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGP-DEVFLQCSPVSWDAF-GLELFGALLFGARCVLQSGQNPDPLE 294 (570)
T ss_dssp EEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCST-TCEEEECSCTTSSTH-HHHHHHHHTTTCEEEECSSSSCCHHH
T ss_pred EEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCC-CCEEEEecCccHHHH-HHHHHHHHhcCCEEEEcCCccCCHHH
Confidence 9999999999999999999999776544 34556776 999999999998765 4568889999999999843 589999
Q ss_pred HHHHHHHCCceEEecc
Q psy13808 174 SLRAIAKEKCMEYLTK 189 (190)
Q Consensus 174 ~~~~i~~~~iT~l~~t 189 (190)
+++.|+++++|++.++
T Consensus 295 ~~~~i~~~~vt~~~~~ 310 (570)
T 4gr5_A 295 IGELVARHGVTMLQLS 310 (570)
T ss_dssp HHHHHHHHTCCEEEEE
T ss_pred HHHHHHHcCCcEEEec
Confidence 9999999999998764
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.8e-23 Score=172.65 Aligned_cols=156 Identities=15% Similarity=0.083 Sum_probs=117.4
Q ss_pred cccCCCCCCccchhhhhhccCCCCCCCCCCCCCCCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCCCe
Q psy13808 14 RIGESQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDG 93 (190)
Q Consensus 14 ~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (190)
.|++||.++.+++.++++++++++++++...... ...... +. +..... .... .......++|+
T Consensus 104 ~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~--~~~~~~-~~-------~~~~~~-~~~~------~~~~~~~~~d~ 166 (620)
T 4dg8_A 104 YLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTP--ANGLPC-VP-------VRHLPA-APAS------VARPCFAADQI 166 (620)
T ss_dssp EEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCC--CTTSCE-EE-------GGGCCC-CCCC------SSCCCCCTTSE
T ss_pred EEeeCccChHHHHHHHHHhCCCcEEEecCccccc--ccCCce-ee-------eccCCc-CCcc------ccCCCCCCCCe
Confidence 4556999999999999999999999966542221 111111 11 110000 0000 01234568999
Q ss_pred EEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcC-CCCChH
Q psy13808 94 INIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPA-PSFKPM 172 (190)
Q Consensus 94 ~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~-~~~~~~ 172 (190)
++|+|||||||.||||+++|+++.+.... ...+++.+ +|++++..|++|..+ .+.++.++..|+++++.+ ..++++
T Consensus 167 a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~-~d~~l~~~p~~~~~~-~~~~~~~l~~G~~~v~~~~~~~~~~ 243 (620)
T 4dg8_A 167 AYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAP-QMRFLVNSPLSFDAA-TLEIWGALLNGGCCVLNDLGPLDPG 243 (620)
T ss_dssp EEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCT-TCEEEECSCTTSTHH-HHHHHHHHTTTCEEEECCSSSCCHH
T ss_pred EEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCC-CCEEEEECccCHHHH-HHHHHHHHhcCCEEEeCccccCCHH
Confidence 99999999999999999999999876554 45567777 999999999999998 455899999999999973 368999
Q ss_pred HHHHHHHHCCceEEecc
Q psy13808 173 DSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 173 ~~~~~i~~~~iT~l~~t 189 (190)
.+++.|+++++|+++++
T Consensus 244 ~~~~~i~~~~vt~~~~~ 260 (620)
T 4dg8_A 244 VLRQLIGERGADSAWLT 260 (620)
T ss_dssp HHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHhCCcEEEcc
Confidence 99999999999998764
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.5e-23 Score=171.45 Aligned_cols=161 Identities=23% Similarity=0.227 Sum_probs=119.2
Q ss_pred cCCCCC---CccchhhhhhccCCCCCCCCCCCCC---C---CCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhc
Q psy13808 16 GESQPF---RERTLSHQDKIRPGRESNPRPSAYK---A---DALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISK 86 (190)
Q Consensus 16 ~i~p~~---~~~~l~~~l~~~~~~~i~~~~~~~~---~---~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (190)
++||.+ +.+++.++++.+++++++++.+... . ...+....+... ..+++..... ......
T Consensus 94 pl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------~~~~~~ 162 (590)
T 3kxw_A 94 PIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAI-----ALESIELNRS------SSWQPT 162 (590)
T ss_dssp EECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEE-----EGGGCCGGGG------GGCCCC
T ss_pred EecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccccee-----echhcccccc------ccCCCC
Confidence 347776 4578899999999999998876221 1 111211111111 1111100000 011123
Q ss_pred cCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcC
Q psy13808 87 SLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPA 166 (190)
Q Consensus 87 ~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~ 166 (190)
...++|+++|+|||||||.||||+++|+++.+.+......+++.+ +|++++.+|++|.+|+...++.++..|+++++.
T Consensus 163 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~-~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~- 240 (590)
T 3kxw_A 163 SIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMND-ETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMM- 240 (590)
T ss_dssp CCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCT-TCEEEECSCTTSHHHHHTTTHHHHHHTCEEEEC-
T ss_pred CCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCC-cCeEEEecCCCcchhhHHHHHHHHhcCceEEEe-
Confidence 467899999999999999999999999999999988888889988 999999999999999766678899999999998
Q ss_pred CCC----ChHHHHHHHHHCCceEEecc
Q psy13808 167 PSF----KPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 167 ~~~----~~~~~~~~i~~~~iT~l~~t 189 (190)
+.+ ++..+++.|+++++|++.++
T Consensus 241 ~~~~~~~~~~~~~~~i~~~~~t~~~~~ 267 (590)
T 3kxw_A 241 SPFSFLQNPLSWLKHITKYKATISGSP 267 (590)
T ss_dssp CHHHHHHCTHHHHHHHHHHTCSEEEEC
T ss_pred CHHHHHHCHHHHHHHHHHhCCeeecCC
Confidence 444 89999999999999998753
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.9e-22 Score=178.90 Aligned_cols=162 Identities=15% Similarity=0.106 Sum_probs=123.2
Q ss_pred ccccCCCCCCccchhhhhhccCCCCCCCCCCCCCC-CCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCC
Q psy13808 13 DRIGESQPFRERTLSHQDKIRPGRESNPRPSAYKA-DALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCR 91 (190)
Q Consensus 13 ~~v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (190)
..||++|.++.+++.++++++++++++++...... ..++.....+.+... . .... .... ......++
T Consensus 540 ~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~-~~~~-------~~~~~~~~ 607 (1304)
T 2vsq_A 540 AYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQ-T---RFEE-QASD-------PATAIDPN 607 (1304)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEESSCG-G---GGGS-CSSC-------CCCCCCTT
T ss_pred EEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEEeccc-c---cccc-ccCC-------CCCCCCCC
Confidence 44567999999999999999999999999774332 223333333332111 1 1111 1100 12345789
Q ss_pred CeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCC--CC
Q psy13808 92 DGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAP--SF 169 (190)
Q Consensus 92 ~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~--~~ 169 (190)
++++|+|||||||+||||+++|+++.+. ......+++.+ +|+++...|++|..+ .+.++.++..|+++++.++ .+
T Consensus 608 ~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~-~d~~l~~~~~~fd~~-~~~~~~~l~~G~~l~~~~~~~~~ 684 (1304)
T 2vsq_A 608 DPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSD-QDTFLSVSNYAFDAF-TFDFYASMLNAARLIIADEHTLL 684 (1304)
T ss_dssp SEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCT-TCEEEECSCTTSTHH-HHHHHHHHTTTCEEEECCGGGTT
T ss_pred CeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCC-CCEEEEECCccHHHH-HHHHHHHHHcCCEEEECChhhcC
Confidence 9999999999999999999999999876 44555677777 999999999999877 5678999999999999853 37
Q ss_pred ChHHHHHHHHHCCceEEecc
Q psy13808 170 KPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 170 ~~~~~~~~i~~~~iT~l~~t 189 (190)
++..+++.|+++++|++.++
T Consensus 685 ~~~~l~~~i~~~~vt~~~~~ 704 (1304)
T 2vsq_A 685 DTERLTDLILQENVNVMFAT 704 (1304)
T ss_dssp CHHHHHHHHHHHTCCEEEEE
T ss_pred CHHHHHHHHHHcCCcEEEcc
Confidence 99999999999999999764
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-21 Score=160.66 Aligned_cols=160 Identities=18% Similarity=0.146 Sum_probs=115.1
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCCCCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCCCeE
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDGI 94 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (190)
|++||.++++++.++++++++++++++.+.... +... .++.. ..+.+......... ......++|++
T Consensus 82 vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~--~~~~-~~~~~----~~~~~~~~~~~~~~------~~~~~~~~d~a 148 (521)
T 3l8c_A 82 IPVDVHSAPERILAIIEIAKPSLIIAIEEFPLT--IEGI-SLVSL----SEIESAKLAEMPYE------RTHSVKGDDNY 148 (521)
T ss_dssp EEEETTSCHHHHHHHHHHSCCSEEEESSCCCSC--CTTS-EEEEH----HHHHHHHHHTCCCC------CSSCCCTTSEE
T ss_pred EecCccccHHHHHHHHHhCCCCEEEecCccccc--cccC-cccch----hhhhhcccccCCcc------cCCCCCCCCcE
Confidence 345999999999999999999999998763221 1111 12211 01111111111110 12346789999
Q ss_pred EEEecCCCCCCCceeEechHHHHHHHHHhhhh--cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCC--CC
Q psy13808 95 NIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR--LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPS--FK 170 (190)
Q Consensus 95 ~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~--~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~--~~ 170 (190)
+|+|||||||.||||+++|+++.+........ +++.. ++++++..|++|..+. +.++.++..|+++++.+.. .+
T Consensus 149 ~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~ 226 (521)
T 3l8c_A 149 YIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPK-QPQMLAQPPYSFDLSV-MYWAPTLALGGTLFALPKELVAD 226 (521)
T ss_dssp EEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCS-SCEEECCSCTTSGGGH-HHHHHHHHTTCEEEECCGGGTTC
T ss_pred EEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCC-CCeEEecCCccHHHHH-HHHHHHHhcCCEEEEcCHHHhhC
Confidence 99999999999999999999999877665544 56666 8999999999999884 4578899999999998432 49
Q ss_pred hHHHHHHHHHCCceEEecc
Q psy13808 171 PMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 171 ~~~~~~~i~~~~iT~l~~t 189 (190)
+..+++.++++++|++.++
T Consensus 227 ~~~~~~~i~~~~~t~~~~~ 245 (521)
T 3l8c_A 227 FKQLFTTIAQLPVGIWTST 245 (521)
T ss_dssp HHHHHHHHHHSCCSEEEEC
T ss_pred HHHHHHHHHHcCCcEEEeC
Confidence 9999999999999998764
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=163.84 Aligned_cols=165 Identities=15% Similarity=0.048 Sum_probs=117.5
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCCCCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCCCeE
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDGI 94 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (190)
|++||.++.+++.++++++++++++++.........+....++. .....+.+.+........ .....+++++
T Consensus 107 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------~~~~~~~~~a 178 (562)
T 3ite_A 107 VPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLD--TKNQSFIENLSTQDTSDI------LNNYPENLDA 178 (562)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCCCTTCEEEE--TTCHHHHHHHHHSCCSCC------CCCCCTTSEE
T ss_pred EecCCcCHHHHHHHHHHhcCCCEEEEccccccccccCccceeec--ccchhhhhhccccccccc------ccCCCCCCcE
Confidence 44599999999999999999999999877554444444333332 222233333332221110 1334678899
Q ss_pred EEEecCCCCCCCceeEechHHHHHHHHHhhhh--------cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcC
Q psy13808 95 NIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR--------LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPA 166 (190)
Q Consensus 95 ~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~--------~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~ 166 (190)
+|+|||||||.||||+++|+++.+........ +.+.. .+++++..|++|..+ ...++.++..|+++++.+
T Consensus 179 ~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~l~~g~~~~~~~ 256 (562)
T 3ite_A 179 YLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGG-VGKFLCLASRAFDVH-IGEMFLAWRFGLCAVTGE 256 (562)
T ss_dssp EEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTT-TCEEECCSCTTSTHH-HHHHHHHHHTTCEEEECC
T ss_pred EEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCc-CceEEEecCchhhhh-HHHHHHHHhcccEEEecc
Confidence 99999999999999999999998876554332 34555 899999999999887 455788999999999983
Q ss_pred CCCChHHHHHHHHHCCceEEecc
Q psy13808 167 PSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 167 ~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
....++.+++.++++++|++.++
T Consensus 257 ~~~~~~~~~~~i~~~~~t~~~~~ 279 (562)
T 3ite_A 257 RLSMLDDLPRTFRELGVTHAGIV 279 (562)
T ss_dssp HHHHHHSHHHHHHHTTCCEEEEC
T ss_pred hhhCHHHHHHHHHHcCCCEEEcC
Confidence 32346789999999999998764
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.83 E-value=8e-21 Score=150.88 Aligned_cols=96 Identities=20% Similarity=0.203 Sum_probs=84.8
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCC
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPS 168 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~ 168 (190)
..+++++|+|||||||.||||++||+++.+++......+++.+ +|++++.+|++|.+|+.. ++.++..|+++++.++.
T Consensus 35 ~~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~-~d~~l~~~pl~h~~gl~~-~~~~l~~g~~~~~~~~~ 112 (358)
T 4gs5_A 35 LGGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGP-GTRALVCLNVGYIAGLMM-LVRGMELDWELTVTEPT 112 (358)
T ss_dssp HHTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCT-TCEEEECSCTTSHHHHHH-HHHHHHHTCEEEEECCC
T ss_pred CCCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCC-CCEEEEECChHHHHHHHH-HHHHHHhCcEEEecCcc
Confidence 3589999999999999999999999999999988888899988 999999999999999654 78889999999998555
Q ss_pred CChHHHHHHHHHCCceEEecc
Q psy13808 169 FKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 169 ~~~~~~~~~i~~~~iT~l~~t 189 (190)
++ .++.|+++++|++.++
T Consensus 113 ~~---~~~~i~~~~~t~~~~~ 130 (358)
T 4gs5_A 113 AN---PLAGLDHADFDFVAMV 130 (358)
T ss_dssp SC---TTTTCSSCCCSEEEEC
T ss_pred cc---HHHHHHHhCCeEEEcC
Confidence 54 4678999999998764
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.2e-18 Score=137.67 Aligned_cols=101 Identities=20% Similarity=0.146 Sum_probs=86.9
Q ss_pred cCCC-CCeEEEEecCCCCCCCceeEechHHHHHHHHHhh---hhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEE
Q psy13808 87 SLNC-RDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIG---KRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTT 162 (190)
Q Consensus 87 ~~~~-~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~---~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~v 162 (190)
...+ +++++|+|||||||.||||+++|+++.++..... ..+++.+ +|++++..|+.|..+....++.++..|+++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~ 159 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRK-TDVFQNSSGYGMFTGGLGFQYGAERLGCLT 159 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCT-TSEEEECSCCTTCHHHHHHHHHHHHHTCEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCC-CCEEEECcccccchhHHHHHHHHHHcCCEE
Confidence 3455 8899999999999999999999999987665543 3457777 999999999987777676788899999999
Q ss_pred EEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 163 VVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 163 v~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
++. +.++++.+++.|+++++|+++++
T Consensus 160 ~~~-~~~~~~~~~~~i~~~~~t~~~~~ 185 (436)
T 3qov_A 160 VPA-AAGNSKRQIKFISDFKTTALHAI 185 (436)
T ss_dssp ECC-CSCCHHHHHHHHHHHTCCEEECC
T ss_pred EeC-CCCCHHHHHHHHHHHCCCEEEEC
Confidence 998 67899999999999999999864
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-17 Score=130.43 Aligned_cols=99 Identities=15% Similarity=0.124 Sum_probs=80.0
Q ss_pred cCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhh---hhcCCcCCCcEEEEeCCc-hhHHHHHHHHHHHHHhCCEE
Q psy13808 87 SLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIG---KRLEFDKTDHKILLQVPM-FHTFGTAMGILNAMNHGSTT 162 (190)
Q Consensus 87 ~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~---~~~~~~~~~~~~l~~~pl-~h~~g~~~~~~~~l~~G~~v 162 (190)
...++++++|+|||||||.||+|+++|+++..+..... ...++.+ +|++++.+|+ +|..|+.. .+.++..|+ +
T Consensus 87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~-~d~~l~~~p~g~~~~g~~~-~~~~~~~G~-~ 163 (369)
T 3hgu_A 87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRP-SGNTLAAIPTGPHIVGAIN-KERALRLGG-M 163 (369)
T ss_dssp TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCC-CCEEEECSCCTTCHHHHHH-HHHHHHTTS-C
T ss_pred cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCC-cceEEEecCCCchhhhHHH-HHHHHHcCC-E
Confidence 35788999999999999999999999999998877433 4556776 9999999999 99988655 556688898 5
Q ss_pred EEcCCCCChH-----------------------HHHHHHHHCCceEEecc
Q psy13808 163 VVPAPSFKPM-----------------------DSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 163 v~~~~~~~~~-----------------------~~~~~i~~~~iT~l~~t 189 (190)
++. .+++|. .+++.|+++++|++.++
T Consensus 164 v~~-~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~ 212 (369)
T 3hgu_A 164 FFS-IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTT 212 (369)
T ss_dssp EEC-CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred EEC-ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeC
Confidence 555 578888 88889999999999864
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.2e-17 Score=133.32 Aligned_cols=100 Identities=15% Similarity=0.056 Sum_probs=84.1
Q ss_pred cCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhh---hhcCCcCCCcEEEEeCCc-hhHHHHHHHHHHHHHhCCEE
Q psy13808 87 SLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIG---KRLEFDKTDHKILLQVPM-FHTFGTAMGILNAMNHGSTT 162 (190)
Q Consensus 87 ~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~---~~~~~~~~~~~~l~~~pl-~h~~g~~~~~~~~l~~G~~v 162 (190)
...++++++++|||||||.||||+++|+++..+..... ..+++.+ +|++++..|+ +|..+ ....+.++..|+++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~-~d~~l~~~~~~~~~~~-~~~~~~~~~~G~~~ 165 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRP-GDTLHNAFGYGLFTGG-LGIHYGAERLGCMV 165 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCT-TCEEEECSCCSSSHHH-HHHHHHHHHHTCEE
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCC-CCEEEEeccCcccccH-HHHHHHHHHcCCEE
Confidence 45678999999999999999999999999887654433 2567777 9999999999 46655 44578889999999
Q ss_pred EEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 163 VVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 163 v~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
++. +.++++.+++.|+++++|+++++
T Consensus 166 ~~~-~~~~~~~~~~~i~~~~~t~l~~~ 191 (443)
T 2y4o_A 166 VPM-SGGQTEKQVQLIRDFEPKIILVT 191 (443)
T ss_dssp ECC-CSCCHHHHHHHHHHHCCSEEEEC
T ss_pred EEC-CCCCHHHHHHHHHHhCCcEEEEC
Confidence 998 67899999999999999999864
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.8e-17 Score=132.63 Aligned_cols=100 Identities=16% Similarity=0.102 Sum_probs=84.4
Q ss_pred cCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhh---hhcCCcCCCcEEEEeCCc-hhHHHHHHHHHHHHHhCCEE
Q psy13808 87 SLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIG---KRLEFDKTDHKILLQVPM-FHTFGTAMGILNAMNHGSTT 162 (190)
Q Consensus 87 ~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~---~~~~~~~~~~~~l~~~pl-~h~~g~~~~~~~~l~~G~~v 162 (190)
...++++++++|||||||.||+|+++|+++..+..... ..+++.+ +|++++..|+ +|..++ ..++.++..|+++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~-~~~~~~~~~G~~~ 163 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARR-GDKVHVSYGYGLFTGGL-GAHYGAERAGLTV 163 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCT-TCEEEECSCCSSSHHHH-HHHHHHHHTTCEE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCC-CCEEEEcccccccccch-HHHHHHHHcCCEE
Confidence 45678999999999999999999999999887654333 3567777 9999999998 677664 4478899999999
Q ss_pred EEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 163 VVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 163 v~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
++. +.++++.+++.|+++++|+++++
T Consensus 164 ~~~-~~~~~~~~~~~i~~~~~t~l~~~ 189 (437)
T 2y27_A 164 IPF-GGGQTEKQVQLIQDFRPDIIMVT 189 (437)
T ss_dssp ECC-CSCCHHHHHHHHHHHCCSEEEEC
T ss_pred EeC-CCCCHHHHHHHHHHhCCCEEEEC
Confidence 988 67899999999999999999864
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=94.03 E-value=0.86 Score=37.01 Aligned_cols=90 Identities=8% Similarity=-0.024 Sum_probs=70.0
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhc---CCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRL---EFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~---~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..|+.++++. .+-.+|.+.+.......+..+ ++.+ +|++...+|-... ++..+++.+..|+..+.
T Consensus 18 ~~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~-gd~V~i~~~~~~~--~~~~~lA~~~~Ga~~vp 85 (509)
T 3ivr_A 18 LFPDRTAFMV---------DGVRLTHRDYLARAERLASGLLRDGVHT-GDRVAILSQNCSE--MIELIGAVALIGAILLP 85 (509)
T ss_dssp HSTTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTCCT-TCEEEEECCSCHH--HHHHHHHHHHTTCEEEE
T ss_pred HCCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEcCCCHH--HHHHHHHHHHhCCEEEe
Confidence 4678888664 134789999887776655443 6776 8998888886544 34557899999999999
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.++.+.++++...+++.++..++..
T Consensus 86 l~~~~~~~~l~~~l~~~~~~~vi~~ 110 (509)
T 3ivr_A 86 VNYRLNADEIAFVLGDGAPSVVVAG 110 (509)
T ss_dssp CCTTSCHHHHHHHHHHHCEEEEEEC
T ss_pred cCCCCCHHHHHHHHHhcCceEEEEC
Confidence 9888999999999999999988764
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=93.67 E-value=1.4 Score=37.21 Aligned_cols=96 Identities=18% Similarity=0.174 Sum_probs=72.1
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEc
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVP 165 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~ 165 (190)
.|+.++++... ..+| ..-.+|.+.+......++.. .++.+ +|++...+|-.-.. +..+++.+..|+..+..
T Consensus 89 ~pd~~Al~~~~-~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~-Gd~V~i~~~~~~e~--vva~lA~~~~Gav~vpl 162 (652)
T 1pg4_A 89 NGDRTAIIWEG-DDTS--QSKHISYRELHRDVCRFANTLLDLGIKK-GDVVAIYMPMVPEA--AVAMLACARIGAVHSVI 162 (652)
T ss_dssp HTTSEEEEEEC-SSTT--CEEEEEHHHHHHHHHHHHHHHHHHTCCT-TCEEEEECCSSHHH--HHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEEc-CCCC--ceeEEeHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEeCCCHHH--HHHHHHHHHcCcEEEec
Confidence 46778876432 2122 23568999888766655543 47777 99999998876543 45578999999999998
Q ss_pred CCCCChHHHHHHHHHCCceEEeccC
Q psy13808 166 APSFKPMDSLRAIAKEKCMEYLTKD 190 (190)
Q Consensus 166 ~~~~~~~~~~~~i~~~~iT~l~~t~ 190 (190)
.+.+.++++...+++.++..++..|
T Consensus 163 ~~~~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 163 FGGFSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEES
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 8889999999999999999888654
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=93.33 E-value=1.2 Score=36.43 Aligned_cols=92 Identities=13% Similarity=0.166 Sum_probs=69.5
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..|+.++++....| -.+|.+.+.......+.. .++.+ +|++...+|-... ++..+++.+..|+..+.
T Consensus 34 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~lA~~L~~~Gv~~-gd~V~i~~~~~~~--~~~~~la~~~~Gav~vp 103 (536)
T 3ni2_A 34 NHSSKPCLINGANG-------DVYTYADVELTARRVASGLNKIGIQQ-GDVIMLFLPSSPE--FVLAFLGASHRGAIITA 103 (536)
T ss_dssp GSTTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHHHTTCCT-TCEEEEECCSSHH--HHHHHHHHHHHTCEEEE
T ss_pred cCCCceEEEECCCC-------CEEEHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEcCCcHH--HHHHHHHHHHhCCEEec
Confidence 36788876542222 468999888766655543 47776 8998888886544 34557899999999999
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..+.+.++++...++..++..++..
T Consensus 104 l~~~~~~~~l~~~l~~~~~~~~i~~ 128 (536)
T 3ni2_A 104 ANPFSTPAELAKHAKASRAKLLITQ 128 (536)
T ss_dssp CCTTCCHHHHHHHHHHHTEEEEEEC
T ss_pred cCCCCCHHHHHHHHHhcCCEEEEEC
Confidence 9888999999999999999988754
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=93.21 E-value=2.1 Score=35.19 Aligned_cols=97 Identities=9% Similarity=0.069 Sum_probs=70.9
Q ss_pred CCCCCeEEEEecCCC-CCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEE
Q psy13808 88 LNCRDGINIQFTSGT-TGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTV 163 (190)
Q Consensus 88 ~~~~~~~~i~~TSGT-TG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv 163 (190)
..|+.++++....+. .+. .-.+|.+.+.......+.. .++.+ +|++...+|-... ++..+++.+..|+..+
T Consensus 31 ~~p~~~A~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~-gd~V~i~~~~~~~--~~~~~lA~~~~G~~~v 105 (549)
T 3g7s_A 31 KFGEKTAIISAEPKFPSEF--PESMNFLEICEVTKKLASGISRKGVRK-GEHVGVCIPNSID--YVMTIYALWRVAATPV 105 (549)
T ss_dssp HHTTSEEEEEESSCCCCSS--CSEEEHHHHHHHHHHHHHHHHHTTCCT-TCEEEEECCSSHH--HHHHHHHHHHTTCEEE
T ss_pred hCCCceEEEeCCCcccccc--cceeeHHHHHHHHHHHHHHHHHcCCCC-CCEEEEECCCCHH--HHHHHHHHHHhCCEEE
Confidence 356788876543221 111 2468888888766655543 46777 8998888886544 3455789999999999
Q ss_pred EcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 164 VPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
...+.+.++++...+++.++..++..
T Consensus 106 pl~~~~~~~~l~~il~~~~~~~~i~~ 131 (549)
T 3g7s_A 106 PINPMYKSFELEHILNDSEATTLVVH 131 (549)
T ss_dssp ECCTTCCHHHHHHHHHHTTCSEEEEE
T ss_pred ccCCCCCHHHHHHHHHhcCCCEEEEC
Confidence 99888999999999999999988754
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=93.03 E-value=0.54 Score=38.69 Aligned_cols=94 Identities=13% Similarity=0.094 Sum_probs=69.0
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEc
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVP 165 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~ 165 (190)
.|+.++++.+..+.++ ..+|.+.+.......+.. .++.+ +|++...+|-.-. ++..+++.+..|+..+..
T Consensus 33 ~p~~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~-gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vpl 105 (550)
T 3rix_A 33 YALVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNT-NHRIVVCSENSLQ--FFMPVLGALFIGVAVAPA 105 (550)
T ss_dssp HHTSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCT-TCEEEEECSSCTT--THHHHHHHHHHTCEEEEC
T ss_pred CCCCceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHHHhCCCC-CCEEEEEcCCccc--HHHHHHHHHHcCCEEeec
Confidence 3455555544333333 468999888766655544 37777 8998888885543 345578999999999999
Q ss_pred CCCCChHHHHHHHHHCCceEEecc
Q psy13808 166 APSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 166 ~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.+.+.++++...++..++..++..
T Consensus 106 ~~~~~~~~l~~~l~~~~~~~vi~~ 129 (550)
T 3rix_A 106 NDIYNERELLNSMNISQPTVVFVS 129 (550)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEEC
T ss_pred CCcCCHHHHHHHHHhcCCeEEEEc
Confidence 888999999999999999988764
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=92.97 E-value=1.7 Score=36.03 Aligned_cols=96 Identities=15% Similarity=0.027 Sum_probs=72.8
Q ss_pred cCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEE
Q psy13808 87 SLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTV 163 (190)
Q Consensus 87 ~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv 163 (190)
...|+.++++..... | ....+|.+.+......++.. .++.+ +|++...+|-.-. ++..+++.+..|+..+
T Consensus 67 ~~~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~-Gd~V~l~~~~~~e--~~~~~lA~~~~Gav~v 139 (580)
T 3etc_A 67 RDSPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFVKHGIGK-GDYVMLTLKSRYD--FWYCMLGLHKLGAIAV 139 (580)
T ss_dssp HHCTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHHHTTCCT-TCEEEEECTTCTH--HHHHHHHHHHHTCEEE
T ss_pred hhCCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEcCCCHH--HHHHHHHHHhCCEEEE
Confidence 347888887765331 2 24678998888766655543 47777 8999888886544 3455789999999999
Q ss_pred EcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 164 VPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
...+.+.++++...+++.++..++..
T Consensus 140 pl~~~~~~~~l~~~l~~~~~~~ii~~ 165 (580)
T 3etc_A 140 PATHMLKTRDIVYRIEKAGLKMIVCI 165 (580)
T ss_dssp ECCTTCCHHHHHHHHHHHTCCEEEEE
T ss_pred eCCccCCHHHHHHHHHhcCCCEEEEe
Confidence 98888999999999999999988753
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=92.91 E-value=1.7 Score=35.95 Aligned_cols=91 Identities=13% Similarity=0.076 Sum_probs=69.8
Q ss_pred cCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEE
Q psy13808 87 SLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTV 163 (190)
Q Consensus 87 ~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv 163 (190)
...|+.++++. . +-.+|.+.+.......+.. .++.+ +|++...+|-... ++..+++.+..|+..+
T Consensus 86 ~~~pd~~A~~~-~--------~~~~Ty~el~~~~~~lA~~L~~~Gv~~-gd~V~i~~~n~~~--~~~~~lA~~~~G~~~v 153 (570)
T 4gr5_A 86 ARAPDAVALLH-E--------ADELTYGALNERANRLAHRLVGLGVAP-GTLVGVHLERGFD--MVVALLAVLKAGGGYT 153 (570)
T ss_dssp HHCTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCT-TCEEEEECCSSHH--HHHHHHHHHHTTCEEE
T ss_pred HHCCCCeEEEC-C--------CCcEeHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEeCCCHH--HHHHHHHHHHHCCEEE
Confidence 34678888664 1 2368999888766655543 46776 8998888886554 3455789999999999
Q ss_pred EcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 164 VPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
...+.+.++++...+++.++..++..
T Consensus 154 pl~~~~~~~~l~~~l~~~~~~~~i~~ 179 (570)
T 4gr5_A 154 MLDPQFPVERLALSLEDTGAPLLVTS 179 (570)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEEC
T ss_pred EcCCCChHHHHHHHHHhcCCCEEEec
Confidence 99888999999999999999988764
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=92.65 E-value=1.8 Score=36.61 Aligned_cols=97 Identities=14% Similarity=0.145 Sum_probs=72.5
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhh----hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGK----RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTV 163 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~----~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv 163 (190)
..|+.++++.... ..| ....+|.+.+......++. ..++.+ +|++...+|-.-- .+..+++.+..|+..+
T Consensus 94 ~~pd~~Al~~~~~-~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~-Gd~V~i~~~~~~e--~v~a~lA~~~~Gav~v 167 (663)
T 1ry2_A 94 KTPNKKAIIFEGD-EPG--QGYSITYKELLEEVCQVAQVLTYSMGVRK-GDTVAVYMPMVPE--AIITLLAISRIGAIHS 167 (663)
T ss_dssp TCTTSEEEEEECS-STT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCT-TCEEEECCCSSHH--HHHHHHHHHHTTCEEE
T ss_pred cCCCceEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCC-CCEEEEEcCCCHH--HHHHHHHHHHcCCEEE
Confidence 3577888765422 122 2346899888776655443 446666 9999999997654 3455799999999999
Q ss_pred EcCCCCChHHHHHHHHHCCceEEeccC
Q psy13808 164 VPAPSFKPMDSLRAIAKEKCMEYLTKD 190 (190)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~iT~l~~t~ 190 (190)
...+.+.++.+...+++.++.++++.|
T Consensus 168 pl~~~~~~~~l~~~l~~~~~~~li~~~ 194 (663)
T 1ry2_A 168 VVFAGFSSNSLRDRINDGDSKVVITTD 194 (663)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEEES
T ss_pred eeCCCCCHHHHHHHHHhcCCeEEEEcc
Confidence 988889999999999999999988754
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=92.62 E-value=2.2 Score=34.99 Aligned_cols=94 Identities=10% Similarity=0.047 Sum_probs=69.7
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..|+.++++....+ .+-.+|.+.+.......+.. .++.+ +|++...++-... ++..+++.+..|+..+.
T Consensus 30 ~~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~-gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vp 101 (541)
T 1v25_A 30 LFGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGV-GDRVATLGFNHFR--HLEAYFAVPGMGAVLHT 101 (541)
T ss_dssp HSTTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCCT-TCEEEEECCSSHH--HHHHHHHHHHTTCEEEE
T ss_pred hCCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEcCCcHH--HHHHHHHHHhcCcEEEe
Confidence 35677776543211 24568998888766555443 46776 8998888886544 34557899999999999
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..+.+.++++...+++.++..++..
T Consensus 102 l~~~~~~~~l~~~l~~~~~~~vi~~ 126 (541)
T 1v25_A 102 ANPRLSPKEIAYILNHAEDKVLLFD 126 (541)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEEC
T ss_pred cCcccCHHHHHHHHHhCCCcEEEEC
Confidence 9888999999999999999988754
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=92.53 E-value=2.5 Score=34.28 Aligned_cols=91 Identities=13% Similarity=0.128 Sum_probs=68.8
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..|+.++++... ++..+|.+.+.......+.. .++.+ +|++...+|-... ++..+++.+..|+..+.
T Consensus 14 ~~p~~~a~~~~~-------~~~~~Ty~el~~~~~~~A~~L~~~Gv~~-gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vp 83 (504)
T 1t5h_X 14 RAPDHCALAVPA-------RGLRLTHAELRARVEAVAARLHADGLRP-QQRVAVVAPNSAD--VVIAILALHRLGAVPAL 83 (504)
T ss_dssp HCTTSEEEEETT-------TTEEEEHHHHHHHHHHHHHHHHHTTCCT-TCEEEEECCSCHH--HHHHHHHHHHHTCEEEE
T ss_pred hCCCceEEEEcC-------CCceeEHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEcCCCHH--HHHHHHHHHHhCcEEEe
Confidence 367777766421 13568999888766655543 46776 8998888886544 34557899999999999
Q ss_pred cCCCCChHHHHHHHHHCCceEEec
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLT 188 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~ 188 (190)
.++.+.++++...+++.++..++.
T Consensus 84 l~~~~~~~~l~~~l~~~~~~~~i~ 107 (504)
T 1t5h_X 84 LNPRLKSAELAELIKRGEMTAAVI 107 (504)
T ss_dssp ECTTSCHHHHHHHHHHTTCSEEEE
T ss_pred cCCccChHHHHHHHhhcCCcEEEE
Confidence 978899999999999999988775
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=92.34 E-value=2.6 Score=37.33 Aligned_cols=92 Identities=16% Similarity=0.175 Sum_probs=70.1
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..|+.++++...+ +-.+|.+.+.......+.. .++.+ +|++...+|-... ++..+++.+..|+..+.
T Consensus 73 ~~pd~~Al~~~~~-------~~~~TY~eL~~~~~~lA~~L~~~Gv~~-gd~V~i~~~ns~e--~~v~~lA~~~~Ga~~vp 142 (979)
T 3tsy_A 73 EFATKPCLINGPT-------GHVYTYSDVHVISRQIAANFHKLGVNQ-NDVVMLLLPNCPE--FVLSFLAASFRGATATA 142 (979)
T ss_dssp GTTTSEEEEETTT-------CCEEEHHHHHHHHHHHHHHHHHTTCCT-TCEEEEECSSCHH--HHHHHHHHHHHTCEEEE
T ss_pred hCCCCeEEEECCC-------CcEEEHHHHHHHHHHHHHHHHHcCCCC-cCEEEEEeCCCHH--HHHHHHHHHHcCCEEEe
Confidence 3678888764222 2468998888766655543 47776 8998888886543 35557899999999999
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..+.+.++++...+++.++..++..
T Consensus 143 l~~~~~~~~l~~~l~~~~~~~vi~~ 167 (979)
T 3tsy_A 143 ANPFFTPAEIAKQAKASNTKLIITE 167 (979)
T ss_dssp ECTTSCHHHHHHHHHHHTEEEEEEC
T ss_pred eCCCCCHHHHHHHHHHcCCeEEEEC
Confidence 9888999999999999999988764
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=92.32 E-value=1.7 Score=35.22 Aligned_cols=89 Identities=11% Similarity=0.038 Sum_probs=68.8
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCC
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPS 168 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~ 168 (190)
.|+.++++. - +-.+|.+.+.......+..+.-.+ +|++...+|-... ++..+++.+..|+..+...+.
T Consensus 14 ~pd~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~~-gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vpl~~~ 81 (501)
T 3ipl_A 14 NGHHIAITD-G--------QESYTYQNLYCEASLLAKRLKAYQ-QSRVGLYIDNSIQ--SIILIHACWLANIEIAMINTR 81 (501)
T ss_dssp HTTSEEEEC-S--------SCEEEHHHHHHHHHHHHHHHHTTC-CSEEEEECCSSHH--HHHHHHHHHHTTCEEEECCTT
T ss_pred cCCceEEEe-C--------CcEEEHHHHHHHHHHHHHHHHHcC-CCEEEEEcCCCHH--HHHHHHHHHHcCCEEEecCcc
Confidence 567777652 1 136899999887777666554335 8998888886544 345579999999999999888
Q ss_pred CChHHHHHHHHHCCceEEecc
Q psy13808 169 FKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 169 ~~~~~~~~~i~~~~iT~l~~t 189 (190)
+.++++...+++.++..++..
T Consensus 82 ~~~~~l~~~l~~~~~~~li~~ 102 (501)
T 3ipl_A 82 LTPNEMTNQMRSIDVQLIFCT 102 (501)
T ss_dssp SCHHHHHHHHHHTTCCEEEES
T ss_pred CCHHHHHHHHHhcCCCEEEEc
Confidence 999999999999999988764
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=92.19 E-value=2.1 Score=35.36 Aligned_cols=90 Identities=14% Similarity=0.073 Sum_probs=68.1
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..|+.++++. . +-.+|.+.+.......+.. .++.+ +|++...+|-... ++..+++.+..|+..+.
T Consensus 51 ~~p~~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~-gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vp 118 (563)
T 1amu_A 51 KRPNNVAIVC-E--------NEQLTYHELNVKANQLARIFIEKGIGK-DTLVGIMMEKSID--LFIGILAVLKAGGAYVP 118 (563)
T ss_dssp HCTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCT-TCEEEEECCSSHH--HHHHHHHHHHTTCEEEE
T ss_pred HCCCCeEEEe-C--------CceecHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEeCCCHH--HHHHHHHHHHhCCEEEE
Confidence 4677877653 1 2368998888766555443 47776 8998888885543 34557899999999999
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..+.+.++++...+++.++..++..
T Consensus 119 l~~~~~~~~l~~il~~~~~~~li~~ 143 (563)
T 1amu_A 119 IDIEYPKERIQYILDDSQARMLLTQ 143 (563)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEEC
T ss_pred eCCCCcHHHHHHHHHhcCCCEEEEc
Confidence 9888999999999999999988753
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=92.09 E-value=2.3 Score=34.91 Aligned_cols=91 Identities=13% Similarity=0.040 Sum_probs=69.5
Q ss_pred cCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEE
Q psy13808 87 SLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTV 163 (190)
Q Consensus 87 ~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv 163 (190)
...|+.++++. .+-.+|.+.+.......+.. .++.+ +|++...+|-... ++..+++.+..|+..+
T Consensus 41 ~~~p~~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~-gd~V~i~~~n~~~--~~~~~lA~~~~Gav~v 108 (544)
T 3o83_A 41 QSHPHSLAIIC---------GERQLSYIELDRLSTNLATRLAEKGLGK-GDTALVQLPNVAE--FYIVFFALLKAGVVVL 108 (544)
T ss_dssp HHCTTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTCCT-TCEEEECCCSSHH--HHHHHHHHHHHTCEEE
T ss_pred HhCCCceEEEc---------CCCceeHHHHHHHHHHHHHHHHHCCCCC-CCEEEEECCCCHH--HHHHHHHHHHhCcEEe
Confidence 34788888763 13468999888766655543 47777 8999888886544 3455789999999999
Q ss_pred EcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 164 VPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
...+...++++...+++.++..++..
T Consensus 109 pl~~~~~~~~l~~~l~~~~~~~li~~ 134 (544)
T 3o83_A 109 NALYSHRQYELNAFIKQIQPKLLIGS 134 (544)
T ss_dssp ECCTTCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCCCHHHHHHHHHhcCeeEEEEc
Confidence 88788999999999999999988754
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=92.00 E-value=1.8 Score=35.17 Aligned_cols=78 Identities=6% Similarity=0.011 Sum_probs=62.0
Q ss_pred eEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceE
Q psy13808 109 AFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCME 185 (190)
Q Consensus 109 v~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~ 185 (190)
-.+|.+.+.......+.. .++.+ +|++...+|-.-. ++..+++.+..|+..+...+.+.++++...+++.++..
T Consensus 27 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~-gd~V~i~~~~~~~--~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~ 103 (503)
T 4fuq_A 27 DKISYAELVARAGRVANVLVARGLQV-GDRVAAQTEKSVE--ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKI 103 (503)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHTTCCT-TCEEEEECCSCHH--HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSE
T ss_pred cEEEHHHHHHHHHHHHHHHHHcCCCC-CCEEEEECCCCHH--HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcE
Confidence 358999888766655543 37777 8998888886544 34557899999999999988899999999999999998
Q ss_pred Eecc
Q psy13808 186 YLTK 189 (190)
Q Consensus 186 l~~t 189 (190)
++..
T Consensus 104 vi~~ 107 (503)
T 4fuq_A 104 VVCD 107 (503)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8754
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=91.90 E-value=2.7 Score=34.40 Aligned_cols=90 Identities=12% Similarity=0.133 Sum_probs=68.1
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..|+.++++. + .-.+|.+.+.......+.. .++.+ +|++...+|-... ++..+++.+..|+..+.
T Consensus 37 ~~p~~~A~~~---~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~-gd~V~i~~~~~~~--~~~~~lA~~~~Ga~~vp 104 (539)
T 1mdb_A 37 KYGDRIAITC---G------NTHWSYRELDTRADRLAAGFQKLGIQQ-KDRVVVQLPNIKE--FFEVIFALFRLGALPVF 104 (539)
T ss_dssp HHTTSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHHTCCT-TCEEEECCCSSHH--HHHHHHHHHHHTCEEEE
T ss_pred HCCCCEEEEe---C------CCcccHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEcCCcHH--HHHHHHHHHHcCeEEec
Confidence 3567777653 1 2468998888766655543 47777 8999888886544 34557899999999888
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..+.+.++++...+++.++..++..
T Consensus 105 l~~~~~~~~l~~~l~~~~~~~vi~~ 129 (539)
T 1mdb_A 105 ALPSHRSSEITYFCEFAEAAAYIIP 129 (539)
T ss_dssp CCTTCCHHHHHHHHHHTTCSEEEEE
T ss_pred CCCCCCHHHHHHHHHhCCCCEEEec
Confidence 8788999999999999999888754
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=91.86 E-value=3.5 Score=34.05 Aligned_cols=94 Identities=15% Similarity=0.138 Sum_probs=69.7
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhc----CCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRL----EFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~----~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
.|+.++++.... .| ....+|.+.+.......+..+ ++.+ +|++...+|-... ++..+++.+..|+..+.
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~-gd~V~i~~~n~~e--~~~~~lA~~~~Ga~~vp 128 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQR-GDRVAVVLPRVPE--WWLVILGCIRAGLIFMP 128 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCT-TCEEEEECCSCHH--HHHHHHHHHHHTCEEEE
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCC-CCEEEEEcCCCHH--HHHHHHHHHHcCeEEEe
Confidence 678888765431 12 235789988887665554432 6776 8998888886544 34557899999999999
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..+.+.++++...+++.++..++..
T Consensus 129 l~~~~~~~~l~~~l~~~~~~~vi~~ 153 (570)
T 3c5e_A 129 GTIQMKSTDILYRLQMSKAKAIVAG 153 (570)
T ss_dssp CCTTCCHHHHHHHHHHHTCSEEEEE
T ss_pred cCCCCCHHHHHHHHHhcCCeEEEec
Confidence 8788999999999999999888764
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=91.43 E-value=1.9 Score=35.19 Aligned_cols=89 Identities=16% Similarity=0.161 Sum_probs=67.1
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEc
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVP 165 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~ 165 (190)
.|+.++++.. +-.+|.+.+.......+.. .++.+ +|++...+|-... ++..+++.+..|+..+..
T Consensus 36 ~p~~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~Gv~~-gd~V~i~~~n~~~--~~~~~lA~~~~G~~~vpl 103 (529)
T 2v7b_A 36 RAGKTAYIDD---------TGSTTYGELEERARRFASALRTLGVHP-EERILLVMLDTVA--LPVAFLGALYAGVVPVVA 103 (529)
T ss_dssp GTTSEEEECS---------SCEEEHHHHHHHHHHHHHHHHHTTCCT-TCEEEEECCSSTH--HHHHHHHHHHHTCEEEEC
T ss_pred cCCceEEEeC---------CCCccHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEcCCcHH--HHHHHHHHHHcCceEEec
Confidence 5677776532 1358998888766655543 46776 8898888886544 344578999999999998
Q ss_pred CCCCChHHHHHHHHHCCceEEecc
Q psy13808 166 APSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 166 ~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.+.+.++++...+++.++..++..
T Consensus 104 ~~~~~~~~l~~~l~~~~~~~vi~~ 127 (529)
T 2v7b_A 104 NTLLTPADYVYMLTHSHARAVIAS 127 (529)
T ss_dssp CTTCCHHHHHHHHHHHTCSEEEEE
T ss_pred CcccCHHHHHHHHhccCCeEEEec
Confidence 788999999999999999888754
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=91.40 E-value=3.1 Score=33.88 Aligned_cols=92 Identities=11% Similarity=0.023 Sum_probs=69.9
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..|+.++++.. | +...+|.+.+.......+.. .++.+ +|++...+|-... ++..+++.+..|+..+.
T Consensus 28 ~~p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~-gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vp 97 (517)
T 3r44_A 28 VSPRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLTALGIAK-GDRVALLMPNSVE--FCCLFYGAAKLGAVAVP 97 (517)
T ss_dssp HSTTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHHHTTCCT-TCEEEEECCSSHH--HHHHHHHHHHHTCEEEE
T ss_pred hCCCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHHHcCCCC-cCEEEEEcCCCHH--HHHHHHHHHHhCcEEEe
Confidence 46788886643 1 22468999888766655543 47777 8998888886544 34557899999999999
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.++.+.++++...+++.++..++..
T Consensus 98 l~~~~~~~~l~~~l~~~~~~~vi~~ 122 (517)
T 3r44_A 98 INTRLAAPEVSFILSDSGSKVVIYG 122 (517)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEEC
T ss_pred cCcccCHHHHHHHHHhcCceEEEEC
Confidence 9888999999999999999888753
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=91.07 E-value=2.5 Score=34.31 Aligned_cols=90 Identities=13% Similarity=0.062 Sum_probs=66.6
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhc---CCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRL---EFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~---~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..|+.++++. . .-.+|.+.+.......+..+ +..+ +|++...++-... ++..+++.+..|+..+.
T Consensus 13 ~~p~~~A~~~-~--------~~~~Ty~el~~~~~~lA~~L~~~g~~~-gd~V~i~~~n~~e--~~~~~la~~~~G~v~vp 80 (512)
T 3fce_A 13 ETPDQTAFVW-R--------DAKITYKQLKEDSDALAHWISSEYPDD-RSPIMVYGHMQPE--MIINFLGCVKAGHAYIP 80 (512)
T ss_dssp HSTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHHSTTC-CCCEEEEESSCHH--HHHHHHHHHHTTCCEEE
T ss_pred HCCCceEEEe-C--------CceEEHHHHHHHHHHHHHHHHHhCCCC-CCEEEEEeCCCHH--HHHHHHHHHHhCCEEEe
Confidence 3677777653 1 13589988887666555443 6666 7887777765433 34557899999999998
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..+.+.++++...++..++..++..
T Consensus 81 l~~~~~~~~l~~il~~~~~~~~i~~ 105 (512)
T 3fce_A 81 VDLSIPADRVQRIAENSGAKLLLSA 105 (512)
T ss_dssp EETTSCHHHHHHHHHHSCCCEEEES
T ss_pred eCCCCcHHHHHHHHHhcCCCEEEec
Confidence 8788999999999999999988754
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=90.76 E-value=4.4 Score=32.33 Aligned_cols=98 Identities=15% Similarity=0.106 Sum_probs=68.8
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhc---CCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRL---EFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~---~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..|+.++++.........-....+|.+.+.......+..+ +. + +|++...++-.-. ++..+++.+..|+..+.
T Consensus 36 ~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~-gd~V~i~~~n~~e--~~~~~lA~~~~G~v~vp 111 (480)
T 3t5a_A 36 LQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-T-GDRVVISAPQGLE--YVVAFLGALQAGRIAVP 111 (480)
T ss_dssp HSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-T-TCEEEEECCSSHH--HHHHHHHHHHTTCEEEE
T ss_pred hCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-C-CCEEEEEcCCcHH--HHHHHHHHHHhCcEEEe
Confidence 4678888776542111111336789999887776655444 43 4 8888888876544 34557899999999998
Q ss_pred cCC---CCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAP---SFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~---~~~~~~~~~~i~~~~iT~l~~t 189 (190)
... ....+++...+++.++..++..
T Consensus 112 l~~~~~~~~~~~l~~il~~~~~~~vi~~ 139 (480)
T 3t5a_A 112 LSVPQGGVTDERSDSVLSDSSPVAILTT 139 (480)
T ss_dssp ECSCCSCTTCCHHHHHHHHHCCSEEEEC
T ss_pred eCCCCccchHHHHHHHHHhCCCCEEEeC
Confidence 855 5678899999999999888764
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=90.64 E-value=2.8 Score=34.07 Aligned_cols=89 Identities=12% Similarity=-0.040 Sum_probs=65.8
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEc
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVP 165 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~ 165 (190)
.|+.+++.. . +-.+|.+.+.......+.. .++.+ +|++...++-... ++..+++.+..|+..+..
T Consensus 17 ~p~~~a~~~-~--------~~~~Ty~el~~~~~~lA~~L~~~g~~~-gd~V~i~~~n~~~--~~~~~lA~~~~G~v~vpl 84 (521)
T 3l8c_A 17 QADFPVYDC-L--------GERRTYGQLKRDSDSIAAFIDSLALLA-KSPVLVFGAQTYD--MLATFVALTKSGHAYIPV 84 (521)
T ss_dssp STTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTCCCT-TCCEEEEECSSHH--HHHHHHHHHHTTCCEEEE
T ss_pred CCCCcceec-C--------CCeecHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEeCCCHH--HHHHHHHHHHhCCEEEec
Confidence 567776543 1 2358898888766655543 46776 7877777765443 345578999999999988
Q ss_pred CCCCChHHHHHHHHHCCceEEecc
Q psy13808 166 APSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 166 ~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.+...++++...++..++..++..
T Consensus 85 ~~~~~~~~l~~il~~~~~~~ii~~ 108 (521)
T 3l8c_A 85 DVHSAPERILAIIEIAKPSLIIAI 108 (521)
T ss_dssp ETTSCHHHHHHHHHHSCCSEEEES
T ss_pred CccccHHHHHHHHHhCCCCEEEec
Confidence 788999999999999999988764
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=90.25 E-value=4.6 Score=33.11 Aligned_cols=98 Identities=13% Similarity=0.020 Sum_probs=69.3
Q ss_pred cCCCCCeEEEEecCCCCCCCc--eeEechHHHHHHHHHhhhhc---CCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCE
Q psy13808 87 SLNCRDGINIQFTSGTTGHPK--AAFLTHYNLINNSNFIGKRL---EFDKTDHKILLQVPMFHTFGTAMGILNAMNHGST 161 (190)
Q Consensus 87 ~~~~~~~~~i~~TSGTTG~PK--gv~~sh~~~~~~~~~~~~~~---~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~ 161 (190)
...|+.++++... +..+..+ .-.+|.+.+.......+..+ +. + +|++...+|-... ++..+++.+..|+.
T Consensus 31 ~~~p~~~A~~~~~-~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~-gd~V~i~~~n~~~--~~~~~lA~~~~Gav 105 (562)
T 3ite_A 31 KTHPEWKAVEVAT-GFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-H-GRAIAVSLDRSLI--AFAIIVGIMKSGNT 105 (562)
T ss_dssp HHCTTSEEEEEEE-CC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-S-SCEEEEECCSCHH--HHHHHHHHHHTTCE
T ss_pred HHCCCchhhhccc-ccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-C-CCEEEEEeCCCHH--HHHHHHHHHHhCCE
Confidence 3477888866543 2333332 34689988887666555433 45 5 8888888886544 34557899999999
Q ss_pred EEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 162 TVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 162 vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.+...+.+.++++...+++.++..++..
T Consensus 106 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~ 133 (562)
T 3ite_A 106 YVPIEAGLPNDRKSFLLRDSRAAMAFVC 133 (562)
T ss_dssp EEECCTTSCHHHHHHHHHHHTCSEEEEC
T ss_pred EEecCCcCHHHHHHHHHHhcCCCEEEEc
Confidence 9999888999999999999999887754
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=89.63 E-value=5.8 Score=33.22 Aligned_cols=91 Identities=8% Similarity=-0.045 Sum_probs=68.9
Q ss_pred cCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhc---CCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEE
Q psy13808 87 SLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRL---EFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTV 163 (190)
Q Consensus 87 ~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~---~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv 163 (190)
...|+.++++. - .-.+|.+.+.......+..+ +..+ ++++...++-... ++..+++.+..|+..+
T Consensus 38 ~~~Pd~~Av~~-~--------~~~lTY~eL~~~a~~lA~~L~~~Gv~~-g~~V~i~~~~s~~--~vva~lailkaGa~~v 105 (620)
T 4dg8_A 38 ALHPHREAIRD-R--------FGSVDYRQLLDSAEQLSDYLLEHYPQP-GVCLGVYGEYSRE--SITCLLAILLSGHHYL 105 (620)
T ss_dssp HHCTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHHCCSS-CCEEEEESSSCHH--HHHHHHHHHHTTCEEE
T ss_pred HhCCCCeEEEc-C--------CCcCcHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEeCCCHH--HHHHHHHHHHhCCEEE
Confidence 34678888653 1 12589988887666555443 6776 8988888886544 3555789999999999
Q ss_pred EcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 164 VPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..++...++++...+++.++..+..+
T Consensus 106 pld~~~p~~~l~~il~~~~~~~vl~~ 131 (620)
T 4dg8_A 106 YIDLKQPAAWNAELCRQVDCRLILDC 131 (620)
T ss_dssp ECCTTSCHHHHHHHHHHHTEEEEEEC
T ss_pred eeCccChHHHHHHHHHhCCCcEEEec
Confidence 99888999999999999999988743
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=89.23 E-value=2.7 Score=34.48 Aligned_cols=78 Identities=10% Similarity=0.083 Sum_probs=61.5
Q ss_pred eEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceE
Q psy13808 109 AFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCME 185 (190)
Q Consensus 109 v~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~ 185 (190)
..+|.+.+.......+.. .++.+ +|++...+|-.-. ++..+++.+..|+..+...+.+.++++...+++.++..
T Consensus 51 ~~~Ty~el~~~~~~lA~~L~~~Gv~~-gd~V~i~~~n~~e--~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ 127 (548)
T 2d1s_A 51 VDYSYAEYLEKSCCLGKALQNYGLVV-DGRIALCSENCEE--FFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTI 127 (548)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHTCCT-TCEEEEECSSCTT--THHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSE
T ss_pred CEeeHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEeCCchh--HHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeE
Confidence 468998888766655543 47777 8888888875543 34457889999999999988899999999999999998
Q ss_pred Eecc
Q psy13808 186 YLTK 189 (190)
Q Consensus 186 l~~t 189 (190)
++..
T Consensus 128 vi~~ 131 (548)
T 2d1s_A 128 VFSS 131 (548)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8764
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=86.57 E-value=6.7 Score=31.74 Aligned_cols=90 Identities=13% Similarity=0.044 Sum_probs=65.0
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhc----CCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRL----EFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTV 163 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~----~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv 163 (190)
..|+.++++. . +-.+|.+.+.......+..+ +..+ ++++...++-.-. ++..+++.+..|+..+
T Consensus 13 ~~p~~~Al~~-~--------~~~~Ty~eL~~~~~~~A~~L~~~~~~~~-g~~V~i~~~n~~~--~~~~~lA~~~~G~~~v 80 (511)
T 3e7w_A 13 TYPQTDAFRS-Q--------GQSLTYQELWEQSDRAAAAIQKRISGEK-KSPILVYGHMEPH--MIVSFLGSVKAGHPYI 80 (511)
T ss_dssp HSTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHTTTSCSSS-CCCEEEEESSCHH--HHHHHHHHHHHTCCEE
T ss_pred HCCCCeEEEc-C--------CceeeHHHHHHHHHHHHHHHHHhcCCCC-CCeEEEEecCCHH--HHHHHHHHHHhCCEEE
Confidence 3567777653 1 24689999887766655444 3334 6777776664332 3445788999999999
Q ss_pred EcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 164 VPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
...+.+.++++...+++.++..++..
T Consensus 81 pl~~~~~~~~l~~~l~~~~~~~li~~ 106 (511)
T 3e7w_A 81 PVDLSIPSERIAKIIESSGAELLIHA 106 (511)
T ss_dssp EEETTSCHHHHHHHHHHHTCCEEEES
T ss_pred ecCCCChHHHHHHHHHhCCCCEEEec
Confidence 88788999999999999999988753
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=86.46 E-value=13 Score=30.90 Aligned_cols=88 Identities=9% Similarity=0.016 Sum_probs=66.9
Q ss_pred CCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcC
Q psy13808 90 CRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPA 166 (190)
Q Consensus 90 ~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~ 166 (190)
|+.++++. . .-.+|.+.+.......+.. .++.+ +|++...++-.-. ++..+++.+..|+..|...
T Consensus 39 pd~~Av~~-~--------~~~lTY~eL~~~a~~lA~~L~~~Gv~~-gd~V~l~~~~s~~--~vva~lA~l~aG~~~vpl~ 106 (617)
T 3rg2_A 39 SDSIAVID-G--------ERQLSYRELNQAADNLACSLRRQGIKP-GETALVQLGNVAE--LYITFFALLKLGVAPVLAL 106 (617)
T ss_dssp CCSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCT-TCEEEEECCSSHH--HHHHHHHHHHHTCEEEEEC
T ss_pred CCCeEEec-C--------CceEeHHHHHHHHHHHHHHHHHcCCCC-CCEEEEECCCcHH--HHHHHHHHHhcCeEEccCC
Confidence 78887663 1 2358999888766655544 36776 8998888886544 3555899999999999887
Q ss_pred CCCChHHHHHHHHHCCceEEecc
Q psy13808 167 PSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 167 ~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+....+++...+++.++..+...
T Consensus 107 ~~~~~~~l~~~l~~~~~~~vl~~ 129 (617)
T 3rg2_A 107 FSHQRSELNAYASQIEPALLIAD 129 (617)
T ss_dssp TTCCHHHHHHHHHHHCCSEEEEE
T ss_pred ccccHHHHHHHHhhcCceEEEec
Confidence 88899999999999999887753
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=85.18 E-value=11 Score=30.92 Aligned_cols=93 Identities=13% Similarity=0.025 Sum_probs=66.2
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..|+.++++....+ .+-.+|.+.+.......+.. .++.+ +|++...+|-... ++..+++.+..|+..+.
T Consensus 23 ~~p~~~a~~~~~~~-----~~~~~Ty~eL~~~~~~lA~~L~~~gv~~-gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vp 94 (590)
T 3kxw_A 23 HSPNKKSCTFLNKE-----LEETMTYEQLDQHAKAIAATLQAEGAKP-GDRVLLLFAPGLP--LIQAFLGCLYAGCIAVP 94 (590)
T ss_dssp HCTTSEEEEEEETT-----EEEEEEHHHHHHHHHHHHHHHHHTTCCT-TCEEEEECCSSHH--HHHHHHHHHHTTCEEEE
T ss_pred hCCCCeEEEEEcCC-----eeEEEcHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEcCCchh--HHHHHHHHHHhCcEEEE
Confidence 46788887655421 24578999888776655543 36776 8998888886544 34557899999999998
Q ss_pred cCCCC---ChHHHHHHHHHCCceEEec
Q psy13808 165 PAPSF---KPMDSLRAIAKEKCMEYLT 188 (190)
Q Consensus 165 ~~~~~---~~~~~~~~i~~~~iT~l~~ 188 (190)
..+.. ..+++...++..++..++.
T Consensus 95 l~~~~~~~~~~~~~~~l~~~~~~~vi~ 121 (590)
T 3kxw_A 95 IYPPAQEKLLDKAQRIVTNSKPVIVLM 121 (590)
T ss_dssp ECCCCSHHHHHHHHHHHHHHCCSEEEE
T ss_pred ecCCCchHHHHHHHHHHHhCCCCEEEe
Confidence 85544 4467788888888877764
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=81.36 E-value=0.31 Score=41.02 Aligned_cols=31 Identities=23% Similarity=0.142 Sum_probs=26.2
Q ss_pred CCCCCeEEEEecCCCC-CCCceeEechHHHHH
Q psy13808 88 LNCRDGINIQFTSGTT-GHPKAAFLTHYNLIN 118 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTT-G~PKgv~~sh~~~~~ 118 (190)
..++.+.++.-||||| |+||-+.+|...+-.
T Consensus 96 l~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~ 127 (609)
T 4b2g_A 96 LSAHPISEFLTSSGTSAGERKLMPTIQEELDR 127 (609)
T ss_dssp SCSSCCCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred cCCCCCCeEEeCCCCCCCCceeeecCHHHHHH
Confidence 4567778999999999 889999999987654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 190 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 1e-15 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 1e-11 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 5e-06 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 72.0 bits (176), Expect = 1e-15
Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 3/99 (3%)
Query: 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFG 147
+N D + I +TSG+TG PK T + + K + + G
Sbjct: 249 MNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTG 308
Query: 148 TAMGILNAMNHGSTTVVPAPS---FKPMDSLRAIAKEKC 183
+ + + G+TT++ P + + K +
Sbjct: 309 HSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQV 347
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.3 bits (145), Expect = 1e-11
Identities = 16/123 (13%), Positives = 37/123 (30%), Gaps = 3/123 (2%)
Query: 64 FRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFI 123
F + A + + ++ D + + +TSG+TG PK + + +
Sbjct: 212 FHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLT 271
Query: 124 GKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPS---FKPMDSLRAIAK 180
+ + + G + + +G T+V + I +
Sbjct: 272 MRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDE 331
Query: 181 EKC 183
K
Sbjct: 332 HKV 334
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 43.7 bits (102), Expect = 5e-06
Identities = 20/96 (20%), Positives = 34/96 (35%)
Query: 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFG 147
+ R + +T+GTTG PK +H L+ +S ++ ++L V
Sbjct: 166 VPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVN 225
Query: 148 TAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
A G+ V+P P P + E
Sbjct: 226 AWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGV 261
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 190 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 99.93 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 99.91 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 99.83 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 99.82 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 99.81 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 99.74 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 99.74 | |
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 95.87 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 95.02 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 94.56 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 94.24 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 94.04 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 93.67 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 93.51 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=99.93 E-value=3.9e-26 Score=191.89 Aligned_cols=166 Identities=16% Similarity=0.155 Sum_probs=126.5
Q ss_pred CCCCCCccchhhhhhccCCCCCCCCCCCC----------------CCCCCCCCcEEEEee----------cCcccHHHHH
Q psy13808 17 ESQPFRERTLSHQDKIRPGRESNPRPSAY----------------KADALPTKLTRLALR----------MGTFRLSDIM 70 (190)
Q Consensus 17 i~p~~~~~~l~~~l~~~~~~~i~~~~~~~----------------~~~~~~~~~~~i~~~----------~~~~~~~~l~ 70 (190)
++|.++++++.+++++++|+++|+++... .....+....+++.. .....+.+..
T Consensus 158 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 237 (643)
T d1pg4a_ 158 IFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLI 237 (643)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEEHHHHH
T ss_pred cCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCcccccccccchhhhhhh
Confidence 39999999999999999999999987521 122345566666651 1112233333
Q ss_pred hcCCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHH-HHhhhhcCCcCCCcEEEEeCCchhHHHHH
Q psy13808 71 QGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNS-NFIGKRLEFDKTDHKILLQVPMFHTFGTA 149 (190)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~-~~~~~~~~~~~~~~~~l~~~pl~h~~g~~ 149 (190)
....... .....+++|+++|+|||||||.||||+++|++++... ......+++.+ +|++++..|++|.+|+.
T Consensus 238 ~~~~~~~------~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~-~d~~~~~~p~~~~~g~~ 310 (643)
T d1pg4a_ 238 EKASPEH------QPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHP-GDIYWCTADVGWVTGHS 310 (643)
T ss_dssp TTSCSCC------CCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCT-TCEEEECSCTTSHHHHH
T ss_pred cccCccc------CCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCC-CCEEEEeCChHHHHHHH
Confidence 3322221 1244678999999999999999999999999976554 44556678887 99999999999999987
Q ss_pred HHHHHHHHhCCEEEEcCC---CCChHHHHHHHHHCCceEEecc
Q psy13808 150 MGILNAMNHGSTTVVPAP---SFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 150 ~~~~~~l~~G~~vv~~~~---~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+.++++|..|+++++++. .+++..+++.|++|+||+++++
T Consensus 311 ~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~ 353 (643)
T d1pg4a_ 311 YLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTA 353 (643)
T ss_dssp HTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEeh
Confidence 778899999999999742 3589999999999999999864
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=2.5e-24 Score=180.38 Aligned_cols=166 Identities=11% Similarity=0.099 Sum_probs=120.5
Q ss_pred CCCCCCccchhhhhhccCCCCCCCCCCCCCC--------------CCCCCCcEEEEee-----------cCcccHHHHHh
Q psy13808 17 ESQPFRERTLSHQDKIRPGRESNPRPSAYKA--------------DALPTKLTRLALR-----------MGTFRLSDIMQ 71 (190)
Q Consensus 17 i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~--------------~~~~~~~~~i~~~-----------~~~~~~~~l~~ 71 (190)
++|.+++++|.++++++++++++++...... ............. .....+.....
T Consensus 146 i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (640)
T d1ry2a_ 146 VFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKK 225 (640)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHHHHHT
T ss_pred CCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeeccccccccccccccccccccccc
Confidence 3899999999999999999999998763221 1222333333220 00111111221
Q ss_pred cCCCcchhhhhhhhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHH-hhhhcCCcCCCcEEEEeCCchhHHHHHH
Q psy13808 72 GAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNF-IGKRLEFDKTDHKILLQVPMFHTFGTAM 150 (190)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~-~~~~~~~~~~~~~~l~~~pl~h~~g~~~ 150 (190)
..... .......++|+++|+|||||||+||||+++|++++.+... ....+.+.+ +|++++.+|++|.+|+.+
T Consensus 226 ~~~~~------~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~-~d~~l~~~pl~~~~g~~~ 298 (640)
T d1ry2a_ 226 KYKTY------YPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQ-EDVFFTAGDIGWITGHTY 298 (640)
T ss_dssp TSCSC------CCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCS-SCEEEECSCTTSHHHHHH
T ss_pred ccccc------cccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCc-ccceeeccchhhhhhHHH
Confidence 11111 1123456789999999999999999999999998776544 444567777 999999999999999887
Q ss_pred HHHHHHHhCCEEEEcCCC---CChHHHHHHHHHCCceEEecc
Q psy13808 151 GILNAMNHGSTTVVPAPS---FKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 151 ~~~~~l~~G~~vv~~~~~---~~~~~~~~~i~~~~iT~l~~t 189 (190)
.++.+|..|+++++.+.. +++..+++.|+++++|++.++
T Consensus 299 ~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~ 340 (640)
T d1ry2a_ 299 VVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVA 340 (640)
T ss_dssp TTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcC
Confidence 788999999999987432 489999999999999999764
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=99.83 E-value=5.2e-21 Score=155.98 Aligned_cols=163 Identities=18% Similarity=0.115 Sum_probs=120.5
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCCCC----------CCCCCCcEEEEe--ecCcccHHHHHhcCCCcchhhhhh
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAYKA----------DALPTKLTRLAL--RMGTFRLSDIMQGAGPEYHRRREQ 83 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~----------~~~~~~~~~i~~--~~~~~~~~~l~~~~~~~~~~~~~~ 83 (190)
+++|.++.+++.++|+.+++++++++...... ...+.....+.. ......+.++.....
T Consensus 104 pl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 174 (536)
T d1mdba_ 104 FALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPV--------- 174 (536)
T ss_dssp ECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSEEGGGCCCCCC---------
T ss_pred ecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccccccchhhcccCCc---------
Confidence 45899999999999999999999988652221 122233333222 122222222211111
Q ss_pred hhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHH-HhCCEE
Q psy13808 84 ISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAM-NHGSTT 162 (190)
Q Consensus 84 ~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l-~~G~~v 162 (190)
..+..+++|+++|+|||||||.||||++||+++..++......+++.+ +|++++..|++|.+++...++..+ ..|.++
T Consensus 175 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~-~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~ 253 (536)
T d1mdba_ 175 KLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDH-STVYLAALPMAHNYPLSSPGVLGVLYAGGRV 253 (536)
T ss_dssp CCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCT-TCEEEECSCTTSHHHHHSSHHHHHHHTTCEE
T ss_pred CCCccCccchHHhhhcccccccceeccccccccccccccccccccccc-ccccccccccccccceeeccccccccccccc
Confidence 123467899999999999999999999999999999988888888988 999999999999999654344444 446666
Q ss_pred EEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 163 VVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 163 v~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+.. +.+++..++..+++++++.+..+
T Consensus 254 ~~~-~~~~~~~~~~~~~~~~~~~~~~~ 279 (536)
T d1mdba_ 254 VLS-PSPSPDDAFPLIEREKVTITALV 279 (536)
T ss_dssp EEC-SSSSHHHHHHHHHHHTCSEEEEC
T ss_pred ccc-CCCCHHHHHHHHhhhcccccccc
Confidence 666 78999999999999999998764
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=99.82 E-value=5.1e-20 Score=150.51 Aligned_cols=165 Identities=17% Similarity=0.188 Sum_probs=120.7
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCC-----CCCCCCCcEEEEeecCc---ccHHHHHhcCCCcchhhhhhhhc
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYK-----ADALPTKLTRLALRMGT---FRLSDIMQGAGPEYHRRREQISK 86 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~~~~~~~~i~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~ 86 (190)
|++||.++.+++.++|+.+++++++++..... ....+..+..+...... ............ ...
T Consensus 93 vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 164 (534)
T d1v25a_ 93 HTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEA--------DPV 164 (534)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSCC--------CCC
T ss_pred EecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeecccccccccccccccccc--------ccc
Confidence 34499999999999999999999999887322 23445566655541111 111111111111 123
Q ss_pred cCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhh--hhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 87 SLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIG--KRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 87 ~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~--~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
...++++++|+|||||||.||||+++|+++........ ....... .+++++.+|++|..+... .+.++..|++.++
T Consensus 165 ~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~-~d~~~~~~p~~~~~~~~~-~~~~~~~g~~~v~ 242 (534)
T d1v25a_ 165 RVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSE-KDVVLPVVPMFHVNAWCL-PYAATLVGAKQVL 242 (534)
T ss_dssp CCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCT-TCEEEECSCTTSHHHHTH-HHHHHHHTCEEEE
T ss_pred ccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhccccccc-ccccccccchhhhccccc-cceeeeecceeee
Confidence 45778999999999999999999999999987654433 3344555 899999999999998666 4566777787777
Q ss_pred cCCCCChHHHHHHHHHCCceEEecc
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..+.+++..++..++++++|++.++
T Consensus 243 ~~~~~~~~~~~~~~~~~~vt~~~~~ 267 (534)
T d1v25a_ 243 PGPRLDPASLVELFDGEGVTFTAGV 267 (534)
T ss_dssp CTTCCSHHHHHHHHHHTTCCEEEEC
T ss_pred ccccccccccchhhhhccccccccC
Confidence 7678999999999999999998864
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=99.81 E-value=6.1e-20 Score=149.85 Aligned_cols=172 Identities=19% Similarity=0.130 Sum_probs=121.9
Q ss_pred ccCCCCCCccchhhhhhccCCCCCCCCCCCCC-----CCCCCCCcEEEEe-----ecCcccHHHHHhcCCCcc-hhhhhh
Q psy13808 15 IGESQPFRERTLSHQDKIRPGRESNPRPSAYK-----ADALPTKLTRLAL-----RMGTFRLSDIMQGAGPEY-HRRREQ 83 (190)
Q Consensus 15 v~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~~~~~~~~i~~-----~~~~~~~~~l~~~~~~~~-~~~~~~ 83 (190)
|++|+.++.+++.++|+.++++++|++.+.+. ..+++..+.+++. ..+...+.+......... ......
T Consensus 100 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (541)
T d1lcia_ 100 APANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFV 179 (541)
T ss_dssp EECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBEEHHHHHHHHSCTTCCTTTCC
T ss_pred EecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCCccccccchhhhhhhhhccccccccccC
Confidence 44599999999999999999999999987332 2345677777665 123344444433222111 111111
Q ss_pred hhccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCC
Q psy13808 84 ISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGS 160 (190)
Q Consensus 84 ~~~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~ 160 (190)
+.....++++++|+|||||||.||||+++|++++......... ..+.+ ++++++.+|++|..+... .+..+..|+
T Consensus 180 ~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~-~~~~~~~~~ 257 (541)
T d1lcia_ 180 PESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIP-DTAILSVVPFHHGFGMFT-TLGYLICGF 257 (541)
T ss_dssp CCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCT-TCEEEECSCTTSHHHHHH-HHHHHHHTC
T ss_pred ccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcccccccc-cccccccccccccccccc-ccccccccc
Confidence 2234567889999999999999999999999998766554433 24555 899999999999998655 567778888
Q ss_pred EEEEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 161 TTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 161 ~vv~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
.++.. ...+....+..+.++++|.+..+
T Consensus 258 ~~~~~-~~~~~~~~~~~~~~~~~t~~~~~ 285 (541)
T d1lcia_ 258 RVVLM-YRFEEELFLRSLQDYKIQSALLV 285 (541)
T ss_dssp EEEEC-SSCCHHHHHHHHHHTTCSEEECC
T ss_pred ccccc-cccccchhHHHHhhhhccccccC
Confidence 88887 78999999999999999998764
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=99.74 E-value=2e-18 Score=140.17 Aligned_cols=159 Identities=12% Similarity=0.071 Sum_probs=113.8
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCCCC-CCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCCCeE
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAYKA-DALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDGI 94 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (190)
++||.++++++.++++.+++++++++...... ............... ......... ...+..+++++
T Consensus 102 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--------~~~p~~~~d~a 169 (514)
T d1amua_ 102 PIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEED----TIKIREGTN--------LHVPSKSTDLA 169 (514)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCS----TTTTSCCSC--------CCCCCCTTSEE
T ss_pred EeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhcccccccccccc----ccccccccc--------CCCCCCcccce
Confidence 56899999999999999999999999873331 111111111111000 000000000 12335788999
Q ss_pred EEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCC--CCChH
Q psy13808 95 NIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAP--SFKPM 172 (190)
Q Consensus 95 ~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~--~~~~~ 172 (190)
+|+|||||||.||+|+++|+++..........+.... ++++++..|++|..++ +.++.++..|+++++... ..+..
T Consensus 170 ~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~-~d~~l~~~p~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ 247 (514)
T d1amua_ 170 YVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTE-KDRIGQFASISFDASV-WEMFMALLTGASLYIILKDTINDFV 247 (514)
T ss_dssp EEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCT-TCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECCHHHHTCHH
T ss_pred EEEEccCCCCCcccccccccccccccccccccccccc-cccccceecccccccc-ccccccccccccccccccccccchh
Confidence 9999999999999999999999999998888888887 9999999999999985 457888999999998742 25778
Q ss_pred HHHHHHHHCCceEEec
Q psy13808 173 DSLRAIAKEKCMEYLT 188 (190)
Q Consensus 173 ~~~~~i~~~~iT~l~~ 188 (190)
..++.+..+.++.+..
T Consensus 248 ~~~~~~~~~~~~~~~~ 263 (514)
T d1amua_ 248 KFEQYINQKEITVITL 263 (514)
T ss_dssp HHHHHHHHTTCCEEEE
T ss_pred hhhhhhhhhhcccccc
Confidence 8999999999988764
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=99.74 E-value=3.6e-18 Score=137.34 Aligned_cols=165 Identities=18% Similarity=0.204 Sum_probs=119.8
Q ss_pred cCCCCCCccchhhhhhccCCCCCCCCCCCCC---CCCCCCCcEEEEeecCcccHHHHHhcCCCcchhhhhhhhccCCCCC
Q psy13808 16 GESQPFRERTLSHQDKIRPGRESNPRPSAYK---ADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRD 92 (190)
Q Consensus 16 ~i~p~~~~~~l~~~l~~~~~~~i~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (190)
++||.++++++.++++++++++++++..... .........++.+ .++......... ..+......++++
T Consensus 83 pi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~ 154 (503)
T d3cw9a1 83 LLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFL-------GDLVRDGEPYSY-GPPIEDPQREPAQ 154 (503)
T ss_dssp EECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHHHHHTTCCCEEEEH-------HHHEETTEECCC-SCCCCCCCCCTTS
T ss_pred EeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHHHhhhccccccccc-------hhhhhhhccccc-CCccccccchhhh
Confidence 4489999999999999999999998876211 1111222333332 222221110000 0011124567899
Q ss_pred eEEEEecCCCCCCCceeEechHHHHHHHHHhhhhcCCcC-CCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCCh
Q psy13808 93 GINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDK-TDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKP 171 (190)
Q Consensus 93 ~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~-~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~ 171 (190)
+++++|||||||.||+++++|+++..+.......+.... ..++.++.+|++|..+.....+.+...++.+++. +.+++
T Consensus 155 ~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 233 (503)
T d3cw9a1 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVV-EEFRP 233 (503)
T ss_dssp EEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEEC-SSCCH
T ss_pred hhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCccccccccccccccccccccccccc-cccCh
Confidence 999999999999999999999999988877666554332 2789999999999988777677788888888888 78999
Q ss_pred HHHHHHHHHCCceEEecc
Q psy13808 172 MDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 172 ~~~~~~i~~~~iT~l~~t 189 (190)
..++..+++++++++..+
T Consensus 234 ~~~~~~i~~~~~~~~~~~ 251 (503)
T d3cw9a1 234 VDALQLVQQEQVTSLFAT 251 (503)
T ss_dssp HHHHHHHHHHTCCEEEEC
T ss_pred HHhhhhhhhceeeccccc
Confidence 999999999999998754
|
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=95.87 E-value=0.05 Score=44.02 Aligned_cols=96 Identities=18% Similarity=0.178 Sum_probs=72.9
Q ss_pred CCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEc
Q psy13808 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVP 165 (190)
Q Consensus 89 ~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~ 165 (190)
.++.+|+|.. +..+|. .-.+|.+.+......++.. .|+.+ +|++...+|-...+ +..+++++..|+..+..
T Consensus 85 ~~d~~Ali~~-~~~~~~--~~~~TY~eL~~~v~~~A~~L~~~Gv~~-Gd~V~i~~~n~~e~--iv~~lA~~~~Gav~v~l 158 (643)
T d1pg4a_ 85 NGDRTAIIWE-GDDTSQ--SKHISYRELHRDVCRFANTLLDLGIKK-GDVVAIYMPMVPEA--AVAMLACARIGAVHSVI 158 (643)
T ss_dssp HTTSEEEEEE-CSSTTC--EEEEEHHHHHHHHHHHHHHHHHHTCCT-TCEEEEECCSSHHH--HHHHHHHHHHTCEEEEC
T ss_pred CCCCEEEEEE-ecCCCC--ceEEeHHHHHHHHHHHHHHHHHcCCCC-CCEEEEecccchHH--HHHHHHHHHhCeEEEec
Confidence 5678887554 333333 2358888888766655543 47777 99999999976553 44478999999999999
Q ss_pred CCCCChHHHHHHHHHCCceEEeccC
Q psy13808 166 APSFKPMDSLRAIAKEKCMEYLTKD 190 (190)
Q Consensus 166 ~~~~~~~~~~~~i~~~~iT~l~~t~ 190 (190)
.+.+.++.+...+++.++..++..|
T Consensus 159 ~~~~~~~~l~~~l~~~~~~~li~~~ 183 (643)
T d1pg4a_ 159 FGGFSPEAVAGCIIDSSSRLVITAD 183 (643)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEES
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEcc
Confidence 8899999999999999999888654
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=95.02 E-value=0.14 Score=38.97 Aligned_cols=93 Identities=13% Similarity=0.122 Sum_probs=69.1
Q ss_pred cCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhh---hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEE
Q psy13808 87 SLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGK---RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTV 163 (190)
Q Consensus 87 ~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv 163 (190)
...|++++++.-.+| .-+|.+.+.......+. ..++.+ +|++...++-.-. ++..+++.+..|+..+
T Consensus 13 ~~~pd~~al~~~~~~-------~~~Ty~el~~~~~~~a~~L~~~Gv~~-gd~V~i~~~n~~~--~~~~~lA~~~~G~v~v 82 (503)
T d3cw9a1 13 TRAPDHCALAVPARG-------LRLTHAELRARVEAVAARLHADGLRP-QQRVAVVAPNSAD--VVIAILALHRLGAVPA 82 (503)
T ss_dssp HHSTTSEEEEEGGGT-------EEEEHHHHHHHHHHHHHHHHHTTCCT-TCEEEEECCSCHH--HHHHHHHHHHHTCEEE
T ss_pred HhCCCCeEEEECCCC-------cEEeHHHHHHHHHHHHHHHHHcCcCC-CCEEEEEeCCCHH--HHHHHHHHHHhCcEEE
Confidence 346788887664444 24788887766655443 346776 8888888775443 3455789999999999
Q ss_pred EcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 164 VPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..++.+.++++...+++.++..++..
T Consensus 83 pi~~~~~~~~i~~~l~~~~~~~~i~~ 108 (503)
T d3cw9a1 83 LLNPRLKSAELAELIKRGEMTAAVIA 108 (503)
T ss_dssp EECTTSCHHHHHHHHHHTTCSEEEES
T ss_pred EeCCCCCHHHHHHHHHhcCCcEEEee
Confidence 99888999999999999999987643
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=94.56 E-value=0.27 Score=37.79 Aligned_cols=91 Identities=13% Similarity=0.151 Sum_probs=69.4
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVV 164 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~ 164 (190)
..||.+|++- +. -.+|.+.+......++.. .++.+ +|++....|-.-. ++..+++++..|+..+.
T Consensus 37 ~~pd~~Al~~---~~------~~~Ty~el~~~v~~~A~~L~~~Gv~~-gd~V~i~~~n~~~--~~v~~lA~~~~G~i~vp 104 (536)
T d1mdba_ 37 KYGDRIAITC---GN------THWSYRELDTRADRLAAGFQKLGIQQ-KDRVVVQLPNIKE--FFEVIFALFRLGALPVF 104 (536)
T ss_dssp HHTTSEEEEE---TT------EEEEHHHHHHHHHHHHHHHHHHTCCT-TCEEEECCCSSHH--HHHHHHHHHHHTCEEEE
T ss_pred HCCCCeEEEE---CC------EeEcHHHHHHHHHHHHHHHHHcCcCC-cCEEEEEeCCCHH--HHHHHHHHHHhCcEEEe
Confidence 4678888653 21 258999888766655443 47777 8888888875433 35558999999999999
Q ss_pred cCCCCChHHHHHHHHHCCceEEeccC
Q psy13808 165 PAPSFKPMDSLRAIAKEKCMEYLTKD 190 (190)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~iT~l~~t~ 190 (190)
..+.+.++.+...+++.++..++..|
T Consensus 105 l~~~~~~~~~~~~l~~~~~~~~~~~~ 130 (536)
T d1mdba_ 105 ALPSHRSSEITYFCEFAEAAAYIIPD 130 (536)
T ss_dssp CCTTCCHHHHHHHHHHTTCSEEEEES
T ss_pred cCCCCCHHHHHHHHHhhccceEeccc
Confidence 98889999999999999999887643
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=94.24 E-value=0.1 Score=40.49 Aligned_cols=78 Identities=13% Similarity=0.131 Sum_probs=60.6
Q ss_pred eEechHHHHHHHHHhhh---hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEEEcCCCCChHHHHHHHHHCCceE
Q psy13808 109 AFLTHYNLINNSNFIGK---RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCME 185 (190)
Q Consensus 109 v~~sh~~~~~~~~~~~~---~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~iT~ 185 (190)
..+|.+.+.......+. ..++.+ +|++...++-.-. ++..+++.+..|+..+.....++.+++...++..++..
T Consensus 46 ~~lTy~el~~~~~~lA~~L~~~Gi~~-Gd~Vai~~~ns~e--~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~ 122 (541)
T d1lcia_ 46 VNITYAEYFEMSVRLAEAMKRYGLNT-NHRIVVCSENSLQ--FFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTV 122 (541)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHTCCT-TCEEEEECSSCSS--THHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSE
T ss_pred eEeeHHHHHHHHHHHHHHHHHcCcCC-CCEEEEEeCCCHH--HHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceE
Confidence 45899888876665543 347777 8888877765433 34457889999999999988899999999999999998
Q ss_pred Eecc
Q psy13808 186 YLTK 189 (190)
Q Consensus 186 l~~t 189 (190)
++..
T Consensus 123 vi~~ 126 (541)
T d1lcia_ 123 VFVS 126 (541)
T ss_dssp EEEC
T ss_pred Eeee
Confidence 8765
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=94.04 E-value=0.45 Score=36.69 Aligned_cols=95 Identities=9% Similarity=0.045 Sum_probs=71.4
Q ss_pred cCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhhh---cCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEE
Q psy13808 87 SLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKR---LEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTV 163 (190)
Q Consensus 87 ~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv 163 (190)
...|+.++++...+|- .-.+|.+.+.......+.. .++.+ +|++...++-... ++..+++.+..|+..+
T Consensus 22 ~~~pd~~av~~~~~g~-----~~~~Ty~el~~~~~~~A~~L~~~Gv~~-gd~V~i~~~n~~e--~~~~~lA~~~~G~v~v 93 (534)
T d1v25a_ 22 ALFGRKEVVSRLHTGE-----VHRTTYAEVYQRARRLMGGLRALGVGV-GDRVATLGFNHFR--HLEAYFAVPGMGAVLH 93 (534)
T ss_dssp HHSTTCEEEEECTTSC-----EEEEEHHHHHHHHHHHHHHHHHTTCCT-TCEEEEECCSSHH--HHHHHHHHHHTTCEEE
T ss_pred HHcCCCeEEEEecCCc-----eEEEcHHHHHHHHHHHHHHHHHCCcCC-CCEEEEEeCCCHH--HHHHHHHHHHhCcEEE
Confidence 3477888877666542 2247888888766655543 47776 8988888885544 3555899999999999
Q ss_pred EcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 164 VPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
..++.+..+++...++..++..++..
T Consensus 94 pl~~~~~~~~l~~~l~~~~~~~i~~~ 119 (534)
T d1v25a_ 94 TANPRLSPKEIAYILNHAEDKVLLFD 119 (534)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEEC
T ss_pred ecCCCCCHHHHHHHHHhhcccccccc
Confidence 99888999999999999998887643
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.67 E-value=0.52 Score=37.50 Aligned_cols=96 Identities=14% Similarity=0.133 Sum_probs=71.3
Q ss_pred CCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhh----hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEEE
Q psy13808 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGK----RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTV 163 (190)
Q Consensus 88 ~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~----~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~vv 163 (190)
..|+.+|++.. +..+|. .-.+|.+.+......++. .+|+.+ +|++...+|-.-. .+..+++.+..|+..+
T Consensus 71 ~~pd~~Ali~~-~~~~g~--~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~-Gd~V~i~~~n~~e--~~~~~lA~~~~Gav~v 144 (640)
T d1ry2a_ 71 KTPNKKAIIFE-GDEPGQ--GYSITYKELLEEVCQVAQVLTYSMGVRK-GDTVAVYMPMVPE--AIITLLAISRIGAIHS 144 (640)
T ss_dssp TCTTSEEEEEE-CSSTTC--CEEEEHHHHHHHHHHHHHHHHHTSCCCT-TCEEEECCCSSHH--HHHHHHHHHHTTCEEE
T ss_pred hCCCCEEEEEE-ecCCCC--eeEEeHHHHHHHHHHHHHHHHHhcCCCC-CCEEEEEeCCCHH--HHHHHHHhccCceEee
Confidence 46888887754 333443 346788888766554433 457777 9999998885544 3455789999999999
Q ss_pred EcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 164 VPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
...+.+.++.+...+++.++..++..
T Consensus 145 pi~~~~~~~~l~~~~~~~~~~~~~~~ 170 (640)
T d1ry2a_ 145 VVFAGFSSNSLRDRINDGDSKVVITT 170 (640)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEEE
T ss_pred cCCCCCCHHHHHHHHHhhhccccccc
Confidence 99888999999999999998887754
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=93.51 E-value=0.53 Score=36.00 Aligned_cols=92 Identities=15% Similarity=0.097 Sum_probs=70.7
Q ss_pred ccCCCCCeEEEEecCCCCCCCceeEechHHHHHHHHHhhh---hcCCcCCCcEEEEeCCchhHHHHHHHHHHHHHhCCEE
Q psy13808 86 KSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGK---RLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTT 162 (190)
Q Consensus 86 ~~~~~~~~~~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~v 162 (190)
....|+.+|++. . +-.+|...+.......+. ..++.+ +|++...+|=...+ +..+++.+..|+..
T Consensus 33 a~~~Pd~~Al~~--~-------~~~~Ty~eL~~~v~~lA~~L~~~Gv~~-gd~Vai~~~n~~~~--v~~~la~~~~G~v~ 100 (514)
T d1amua_ 33 VSKRPNNVAIVC--E-------NEQLTYHELNVKANQLARIFIEKGIGK-DTLVGIMMEKSIDL--FIGILAVLKAGGAY 100 (514)
T ss_dssp HHHCTTSEEEEE--T-------TEEEEHHHHHHHHHHHHHHHHHTTCCT-TCEEEEECCSSHHH--HHHHHHHHHTTCEE
T ss_pred HHhCCCCeEEEE--C-------CeeEcHHHHHHHHHHHHHHHHHcCcCC-cCEEEEEeCCCHHH--HHHHHHHHHhCcEE
Confidence 345789998764 1 136898888876665553 347877 89988888765543 44578999999999
Q ss_pred EEcCCCCChHHHHHHHHHCCceEEecc
Q psy13808 163 VVPAPSFKPMDSLRAIAKEKCMEYLTK 189 (190)
Q Consensus 163 v~~~~~~~~~~~~~~i~~~~iT~l~~t 189 (190)
+...+.+.++.+...++..++..++..
T Consensus 101 v~l~~~~~~~~l~~~l~~~~~~~li~~ 127 (514)
T d1amua_ 101 VPIDIEYPKERIQYILDDSQARMLLTQ 127 (514)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEEC
T ss_pred EEeCCCCCHHHHHHHHhccCCcEEEEe
Confidence 999888999999999999999888753
|