Psyllid ID: psy13877

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQMGSSPAQVVKLTNPPVQTGQKMIVLTNNSNPPALEEKKFDRGIYNNEGLIASKLMKKGGQDRRKPERTSST
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEccccccccEEEEEEEcccccccccccccEEEEEEEccccccccccEEEEEcccccEEcccccHHHHHHcccccHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHccccccEEEEcccccccccHHEEEEHHHHccccccccccccEEEEEEEcccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
mcpsedcqvnksggrlylqtrgskfvkfQELKvqehtsnqplqmgsspaqvvkltnppvqtgqKMIVLtnnsnppaleekkfdrgiynneGLIASKLMkkggqdrrkpertsst
Flexible Loop (DISEMBL)
mcpsedcqvnksggrlylqtrGSKFVKFQELKVQEhtsnqplqmgsspAQVVKLTNPPVQTGQKMIVLTNNSNPPALEEKKFDRGIYNNEGLIasklmkkggqdrrkpertsst
Low Complexity Region (SEG)
MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQMGSSPAQVVKLTNPPVQTGQKMIVLTNNSNPPALEEKKFDRGIYNNEGLIASKLMKKGGQDRRKPERTSST
Disordered region (IsUnstruct)
***************LYLQ****KFVKF*********************************************************IY***************************
Disordered Region (DISOPRED)
MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQMGSSPAQVVKLTNPPVQTGQKMIVLTNNSNPPALEEKKFDRGIYNNEGLIASKLMKKGGQ***********
Disordered Region (DISEMBL)
**********KSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQMGSSPAQVVKLTNPPVQTGQKMIVLTNNSNPPALEEKKFDRGIYNNEGLIASKLM****************
Disordered Region (DISPRO)
MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQMGSSPAQVVKLTNPPVQTGQKMIVLTNNSNPPALEEKKFDRGIYNNEGLIASKLMKKG*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQMGSSPAQVVKLTNPPVQTGQKMIVLTNNSNPPALEEKKFDRGIYNNEGLIASKLMKKGGQDRRKPERTSST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
Q6NX31	720	DNA replication licensing	yes	N/A	0.368	0.058	0.738	3e-14
Q91876	720	DNA replication licensing	N/A	N/A	0.368	0.058	0.738	3e-14
Q7ZXB1	720	DNA replication licensing	N/A	N/A	0.368	0.058	0.738	3e-14
Q3ZBH9	719	DNA replication licensing	yes	N/A	0.464	0.073	0.6	4e-14
Q9XYU0	720	DNA replication licensing	yes	N/A	0.359	0.056	0.756	5e-14
P33993	719	DNA replication licensing	yes	N/A	0.464	0.073	0.581	7e-14
Q61881	719	DNA replication licensing	yes	N/A	0.368	0.058	0.738	1e-13
O75001	760	DNA replication licensing	yes	N/A	0.359	0.053	0.487	1e-06
P38132	845	DNA replication licensing	yes	N/A	0.359	0.048	0.463	5e-05
P43299	716	Protein PROLIFERA OS=Arab	yes	N/A	0.350	0.055	0.5	8e-05

>sp|Q6NX31|MCM7_XENTR DNA replication licensing factor mcm7 OS=Xenopus tropicalis GN=mcm7 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 31/42 (73%), Positives = 37/42 (88%)

Query: 1   MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPL 42
           MCPS +CQ N+SGGRLYLQTRGSKF+KFQELK+QEH+   P+
Sbjct: 204 MCPSRECQTNRSGGRLYLQTRGSKFIKFQELKIQEHSDQVPV 245

Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity. The existence of maternal and zygotic forms of mcm3 and mcm6 suggests that specific forms of mcm2-7 complexes may be used during different stages of development.
Xenopus tropicalis (taxid: 8364)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2

>sp|Q91876|MCM7A_XENLA DNA replication licensing factor mcm7-A OS=Xenopus laevis GN=mcm7-a PE=1 SV=2

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 31/42 (73%), Positives = 37/42 (88%)

Query: 1   MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPL 42
           MCPS +CQ N+SGGRLYLQTRGSKF+KFQELK+QEH+   P+
Sbjct: 204 MCPSRECQTNRSGGRLYLQTRGSKFIKFQELKIQEHSDQVPV 245

Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity. The existence of maternal and zygotic forms of mcm3 and mcm6 suggests that specific forms of mcm2-7 complexes may be used during different stages of development.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q7ZXB1|MCM7B_XENLA DNA replication licensing factor mcm7-B OS=Xenopus laevis GN=mcm7-b PE=2 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 31/42 (73%), Positives = 37/42 (88%)

Query: 1   MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPL 42
           MCPS +CQ N+SGGRLYLQTRGSKF+KFQELK+QEH+   P+
Sbjct: 204 MCPSRECQTNRSGGRLYLQTRGSKFIKFQELKIQEHSDQVPV 245

Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity. The existence of maternal and zygotic forms of mcm3 and mcm6 suggests that specific forms of mcm2-7 complexes may be used during different stages of development.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q3ZBH9|MCM7_BOVIN DNA replication licensing factor MCM7 OS=Bos taurus GN=MCM7 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 43/55 (78%), Gaps = 2/55 (3%)

Query: 1   MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQMGSSPAQVVKLT 55
           MCPS++CQ N+SGGRLYLQTRGSKF+KFQE+K+QEH+   P+  G+ P  +  L 
Sbjct: 205 MCPSQECQTNRSGGRLYLQTRGSKFIKFQEMKMQEHSDQVPV--GNIPRSITVLV 257

Acts as component of the MCM2-7 complex (MCM complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the MCM2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity. Required for S-phase checkpoint activation upon UV-induced damage.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q9XYU0|MCM7_DROME DNA replication licensing factor Mcm7 OS=Drosophila melanogaster GN=Mcm7 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 31/41 (75%), Positives = 38/41 (92%)

Query: 2   CPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPL 42
           CPS+DC+VNK+GGRLYLQTRGSKFVKFQE+K+QEH+   P+
Sbjct: 206 CPSDDCRVNKAGGRLYLQTRGSKFVKFQEVKMQEHSDQVPV 246

Acts as component of the Mcm2-7 complex (Mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the Mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|P33993|MCM7_HUMAN DNA replication licensing factor MCM7 OS=Homo sapiens GN=MCM7 PE=1 SV=4

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 43/55 (78%), Gaps = 2/55 (3%)

Query: 1   MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQMGSSPAQVVKLT 55
           MCPS++CQ N+SGGRLYLQTRGS+F+KFQE+K+QEH+   P+  G+ P  +  L 
Sbjct: 205 MCPSQECQTNRSGGRLYLQTRGSRFIKFQEMKMQEHSDQVPV--GNIPRSITVLV 257

Acts as component of the MCM2-7 complex (MCM complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the MCM2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity. Required for S-phase checkpoint activation upon UV-induced damage.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q61881|MCM7_MOUSE DNA replication licensing factor MCM7 OS=Mus musculus GN=Mcm7 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/42 (73%), Positives = 38/42 (90%)

Query: 1   MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPL 42
           MCPS++CQ N+SGGRLYLQTRGSKFVKFQE+K+QEH+   P+
Sbjct: 205 MCPSQECQTNRSGGRLYLQTRGSKFVKFQEMKIQEHSDQVPV 246

Acts as component of the MCM2-7 complex (MCM complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the MCM2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity. Required for S-phase checkpoint activation upon UV-induced damage.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|O75001|MCM7_SCHPO DNA replication licensing factor mcm7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mcm7 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 32/41 (78%)

Query: 2   CPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPL 42
           CPS++C+ N + G+L++ TR SKF+ FQE+K+QE T+  P+
Sbjct: 227 CPSDECKKNDAKGQLFMSTRASKFLPFQEVKIQELTNQVPI 267

Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity (By similarity). Required for the progression of S phase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|P38132|MCM7_YEAST DNA replication licensing factor MCM7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MCM7 PE=1 SV=4

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 28/41 (68%)

Query: 2   CPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPL 42
           C SE+C  N++ G+L++ TR SKF  FQE K+QE +   P+
Sbjct: 284 CTSEECSQNQTKGQLFMSTRASKFSAFQECKIQELSQQVPV 324

Acts as component of the MCM2-7 complex (MCM complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the MCM2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity. Once loaded onto DNA, double hexamers can slide on dsDNA in the absence of ATPase activity.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|P43299|PROL_ARATH Protein PROLIFERA OS=Arabidopsis thaliana GN=PRL PE=1 SV=2

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/40 (50%), Positives = 25/40 (62%)

Query: 2   CPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQP 41
           CPS  C++N   G   LQ R SKF+KFQE K+QE   + P
Sbjct: 200 CPSSRCRLNSKAGNPILQLRASKFLKFQEAKMQELAEHVP 239

Required for megagametophyte and embryo development.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
91082353	719	PREDICTED: similar to DNA replication li	0.368	0.058	0.833	2e-14
443682995	723	hypothetical protein CAPTEDRAFT_159337 [	0.368	0.058	0.785	9e-14
321458111	718	putative MCM7, Minichromosome maintenanc	0.368	0.058	0.785	1e-13
157112993	717	DNA replication licensing factor MCM7 [A	0.359	0.057	0.780	4e-13
170028082	717	DNA replication licensing factor MCM7 [C	0.359	0.057	0.780	4e-13
427788889	722	Putative dna replication licensing facto	0.359	0.056	0.756	5e-13
427779899	714	Putative dna replication licensing facto	0.359	0.057	0.756	6e-13
427792767	634	Putative dna replication licensing facto	0.359	0.064	0.756	6e-13
126309319	722	PREDICTED: DNA replication licensing fac	0.464	0.073	0.618	8e-13
395533673	721	PREDICTED: DNA replication licensing fac	0.464	0.073	0.618	8e-13

>gi|91082353|ref|XP_967422.1| PREDICTED: similar to DNA replication licensing factor MCM7 [Tribolium castaneum] gi|270007172|gb|EFA03620.1| hypothetical protein TcasGA2_TC013713 [Tribolium castaneum]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/42 (83%), Positives = 39/42 (92%)

Query: 1   MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPL 42
           MCPSEDC+VNKSGGRLYLQTRGSKFVKFQELK+QEH+   P+
Sbjct: 205 MCPSEDCRVNKSGGRLYLQTRGSKFVKFQELKIQEHSDQVPV 246

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443682995|gb|ELT87392.1| hypothetical protein CAPTEDRAFT_159337 [Capitella teleta]

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 33/42 (78%), Positives = 38/42 (90%)

Query: 1   MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPL 42
           MCPS+DCQ NKSGGRLYLQTRGSKF+KFQELK+QEH+   P+
Sbjct: 208 MCPSQDCQTNKSGGRLYLQTRGSKFIKFQELKIQEHSDQVPV 249

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|321458111|gb|EFX69184.1| putative MCM7, Minichromosome maintenance complex component 7 [Daphnia pulex]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/42 (78%), Positives = 39/42 (92%)

Query: 1   MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPL 42
           MCP++DC+VNKSGGRLYLQTRGSKFVKFQELK+QEH+   P+
Sbjct: 204 MCPTDDCKVNKSGGRLYLQTRGSKFVKFQELKIQEHSDQVPV 245

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157112993|ref|XP_001657714.1| DNA replication licensing factor MCM7 [Aedes aegypti] gi|108883684|gb|EAT47909.1| AAEL000999-PA [Aedes aegypti]

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 32/41 (78%), Positives = 38/41 (92%)

Query: 2   CPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPL 42
           CPSEDC+VNK+GGRLYLQTRGSKF+KFQELK+QEH+   P+
Sbjct: 205 CPSEDCRVNKAGGRLYLQTRGSKFMKFQELKIQEHSDQVPV 245

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170028082|ref|XP_001841925.1| DNA replication licensing factor MCM7 [Culex quinquefasciatus] gi|167871750|gb|EDS35133.1| DNA replication licensing factor MCM7 [Culex quinquefasciatus]

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 32/41 (78%), Positives = 38/41 (92%)

Query: 2   CPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPL 42
           CPSEDC+VNKSGGRLYLQTRGSKF+KFQE+K+QEH+   P+
Sbjct: 205 CPSEDCRVNKSGGRLYLQTRGSKFMKFQEIKIQEHSDQVPV 245

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427788889|gb|JAA59896.1| Putative dna replication licensing factor mcm4 component [Rhipicephalus pulchellus]

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 31/41 (75%), Positives = 38/41 (92%)

Query: 2   CPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPL 42
           CPS+DC+VN+SGGRLYLQTRGSKF+KFQELK+QEH+   P+
Sbjct: 206 CPSDDCRVNRSGGRLYLQTRGSKFIKFQELKIQEHSDQVPV 246

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427779899|gb|JAA55401.1| Putative dna replication licensing factor mcm4 component [Rhipicephalus pulchellus]

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 31/41 (75%), Positives = 38/41 (92%)

Query: 2   CPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPL 42
           CPS+DC+VN+SGGRLYLQTRGSKF+KFQELK+QEH+   P+
Sbjct: 198 CPSDDCRVNRSGGRLYLQTRGSKFIKFQELKIQEHSDQVPV 238

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427792767|gb|JAA61835.1| Putative dna replication licensing factor mcm4 component, partial [Rhipicephalus pulchellus]

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 31/41 (75%), Positives = 38/41 (92%)

Query: 2   CPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPL 42
           CPS+DC+VN+SGGRLYLQTRGSKF+KFQELK+QEH+   P+
Sbjct: 154 CPSDDCRVNRSGGRLYLQTRGSKFIKFQELKIQEHSDQVPV 194

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|126309319|ref|XP_001367189.1| PREDICTED: DNA replication licensing factor MCM7 [Monodelphis domestica]

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 43/55 (78%), Gaps = 2/55 (3%)

Query: 1   MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQMGSSPAQVVKLT 55
           MCPS++CQ N+SGGRLYLQTRGSKF+KFQELK+QEH+   P+  G+ P  +  L 
Sbjct: 205 MCPSQECQTNRSGGRLYLQTRGSKFIKFQELKMQEHSDQVPV--GNIPRSITVLV 257

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395533673|ref|XP_003768879.1| PREDICTED: DNA replication licensing factor MCM7 [Sarcophilus harrisii]

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 43/55 (78%), Gaps = 2/55 (3%)

Query: 1   MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQMGSSPAQVVKLT 55
           MCPS++CQ N+SGGRLYLQTRGSKF+KFQELK+QEH+   P+  G+ P  +  L 
Sbjct: 205 MCPSQECQTNRSGGRLYLQTRGSKFIKFQELKMQEHSDQVPV--GNIPRSITVLV 257

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
UNIPROTKB|C9J8M6	183	MCM7 "DNA replication licensin	0.456	0.284	0.592	3.8e-14
MGI|MGI:1298398	719	Mcm7 "minichromosome maintenan	0.429	0.068	0.647	2e-13
UNIPROTKB|Q3ZBH9	719	MCM7 "DNA replication licensin	0.456	0.072	0.611	2.6e-13
UNIPROTKB|E2RNU4	719	MCM7 "Uncharacterized protein"	0.456	0.072	0.611	2.6e-13
RGD|1303018	719	Mcm7 "minichromosome maintenan	0.429	0.068	0.627	2.6e-13
UNIPROTKB|Q6NX31	720	mcm7 "DNA replication licensin	0.403	0.063	0.687	4.2e-13
UNIPROTKB|Q7ZXB1	720	mcm7-b "DNA replication licens	0.403	0.063	0.687	4.2e-13
UNIPROTKB|Q91876	720	mcm7-a "DNA replication licens	0.403	0.063	0.687	4.2e-13
UNIPROTKB|P33993	719	MCM7 "DNA replication licensin	0.456	0.072	0.592	5.4e-13
FB|FBgn0020633	720	Mcm7 "Minichromosome maintenan	0.359	0.056	0.756	1.1e-12

UNIPROTKB|C9J8M6 MCM7 "DNA replication licensing factor MCM7" [Homo sapiens (taxid:9606)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 32/54 (59%), Positives = 43/54 (79%)

Query:     1 MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQMGSSPAQVVKL 54
             MCPS++CQ N+SGGRLYLQTRGS+F+KFQE+K+QEH+   P+  G+ P  +  L
Sbjct:    98 MCPSQECQTNRSGGRLYLQTRGSRFIKFQEMKMQEHSDQVPV--GNIPRSITVL 149

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0042555 "MCM complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003678 "DNA helicase activity" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006268 "DNA unwinding involved in replication" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0071364 "cellular response to epidermal growth factor stimulus" evidence=IEA

MGI|MGI:1298398 Mcm7 "minichromosome maintenance deficient 7 (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 186 (70.5 bits), Expect = 2.0e-13, P = 2.0e-13
 Identities = 33/51 (64%), Positives = 42/51 (82%)

Query:     1 MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQMGSSPAQV 51
             MCPS++CQ N+SGGRLYLQTRGSKFVKFQE+K+QEH+   P+  G+ P  +
Sbjct:   205 MCPSQECQTNRSGGRLYLQTRGSKFVKFQEMKIQEHSDQVPV--GNIPRSI 253

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003678 "DNA helicase activity" evidence=IDA

GO:0003697 "single-stranded DNA binding" evidence=IPI

GO:0004386 "helicase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=ISO

GO:0006260 "DNA replication" evidence=IEA

GO:0006268 "DNA unwinding involved in replication" evidence=IPI

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0007049 "cell cycle" evidence=IEA

GO:0008283 "cell proliferation" evidence=IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042325 "regulation of phosphorylation" evidence=ISO

GO:0042555 "MCM complex" evidence=ISO

UNIPROTKB|Q3ZBH9 MCM7 "DNA replication licensing factor MCM7" [Bos taurus (taxid:9913)]

 Score = 185 (70.2 bits), Expect = 2.6e-13, P = 2.6e-13
 Identities = 33/54 (61%), Positives = 43/54 (79%)

Query:     1 MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQMGSSPAQVVKL 54
             MCPS++CQ N+SGGRLYLQTRGSKF+KFQE+K+QEH+   P+  G+ P  +  L
Sbjct:   205 MCPSQECQTNRSGGRLYLQTRGSKFIKFQEMKMQEHSDQVPV--GNIPRSITVL 256

GO:0005634 "nucleus" evidence=ISS

GO:0042555 "MCM complex" evidence=ISS

GO:0042325 "regulation of phosphorylation" evidence=ISS

GO:0006974 "response to DNA damage stimulus" evidence=ISS

GO:0008283 "cell proliferation" evidence=ISS

GO:0006268 "DNA unwinding involved in replication" evidence=ISS

GO:0003697 "single-stranded DNA binding" evidence=ISS

GO:0003678 "DNA helicase activity" evidence=ISS

GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006270 "DNA replication initiation" evidence=IEA

UNIPROTKB|E2RNU4 MCM7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 185 (70.2 bits), Expect = 2.6e-13, P = 2.6e-13
 Identities = 33/54 (61%), Positives = 43/54 (79%)

Query:     1 MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQMGSSPAQVVKL 54
             MCPS++CQ N+SGGRLYLQTRGSKF+KFQE+K+QEH+   P+  G+ P  +  L
Sbjct:   205 MCPSQECQTNRSGGRLYLQTRGSKFIKFQEMKMQEHSDQVPV--GNIPRSITVL 256

GO:0042555 "MCM complex" evidence=IEA

GO:0042325 "regulation of phosphorylation" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0006268 "DNA unwinding involved in replication" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006270 "DNA replication initiation" evidence=IEA

RGD|1303018 Mcm7 "minichromosome maintenance complex component 7" [Rattus norvegicus (taxid:10116)]

 Score = 185 (70.2 bits), Expect = 2.6e-13, P = 2.6e-13
 Identities = 32/51 (62%), Positives = 42/51 (82%)

Query:     1 MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQMGSSPAQV 51
             MCPS++CQ N+SGGRLYLQTRGSKF+KFQE+K+QEH+   P+  G+ P  +
Sbjct:   205 MCPSQECQTNRSGGRLYLQTRGSKFIKFQEMKIQEHSDQVPV--GNIPRSI 253

GO:0003677 "DNA binding" evidence=TAS

GO:0003697 "single-stranded DNA binding" evidence=IEA;ISO

GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=TAS

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006260 "DNA replication" evidence=TAS

GO:0006268 "DNA unwinding involved in replication" evidence=IEA;ISO

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006974 "response to DNA damage stimulus" evidence=IEA;ISO

GO:0008094 "DNA-dependent ATPase activity" evidence=TAS

GO:0008283 "cell proliferation" evidence=ISO;TAS

GO:0042325 "regulation of phosphorylation" evidence=IEA;ISO

GO:0042493 "response to drug" evidence=IEP

GO:0042555 "MCM complex" evidence=IEA;ISO

GO:0071310 "cellular response to organic substance" evidence=IEP

GO:0071364 "cellular response to epidermal growth factor stimulus" evidence=IEP

GO:0003678 "DNA helicase activity" evidence=ISO

UNIPROTKB|Q6NX31 mcm7 "DNA replication licensing factor mcm7" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 183 (69.5 bits), Expect = 4.2e-13, P = 4.2e-13
 Identities = 33/48 (68%), Positives = 40/48 (83%)

Query:     1 MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQMGSSP 48
             MCPS +CQ N+SGGRLYLQTRGSKF+KFQELK+QEH+   P+  G+ P
Sbjct:   204 MCPSRECQTNRSGGRLYLQTRGSKFIKFQELKIQEHSDQVPV--GNIP 249

GO:0000785 "chromatin" evidence=ISS

GO:0006200 "ATP catabolic process" evidence=ISS

GO:0006268 "DNA unwinding involved in replication" evidence=ISS

GO:0030174 "regulation of DNA-dependent DNA replication initiation" evidence=ISS

GO:0042555 "MCM complex" evidence=ISS

GO:0003682 "chromatin binding" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

UNIPROTKB|Q7ZXB1 mcm7-b "DNA replication licensing factor mcm7-B" [Xenopus laevis (taxid:8355)]

 Score = 183 (69.5 bits), Expect = 4.2e-13, P = 4.2e-13
 Identities = 33/48 (68%), Positives = 40/48 (83%)

Query:     1 MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQMGSSP 48
             MCPS +CQ N+SGGRLYLQTRGSKF+KFQELK+QEH+   P+  G+ P
Sbjct:   204 MCPSRECQTNRSGGRLYLQTRGSKFIKFQELKIQEHSDQVPV--GNIP 249

GO:0000785 "chromatin" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030174 "regulation of DNA-dependent DNA replication initiation" evidence=IDA

GO:0042555 "MCM complex" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

UNIPROTKB|Q91876 mcm7-a "DNA replication licensing factor mcm7-A" [Xenopus laevis (taxid:8355)]

 Score = 183 (69.5 bits), Expect = 4.2e-13, P = 4.2e-13
 Identities = 33/48 (68%), Positives = 40/48 (83%)

Query:     1 MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQMGSSP 48
             MCPS +CQ N+SGGRLYLQTRGSKF+KFQELK+QEH+   P+  G+ P
Sbjct:   204 MCPSRECQTNRSGGRLYLQTRGSKFIKFQELKIQEHSDQVPV--GNIP 249

GO:0000785 "chromatin" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0006268 "DNA unwinding involved in replication" evidence=IDA

GO:0030174 "regulation of DNA-dependent DNA replication initiation" evidence=IDA

GO:0042555 "MCM complex" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0016887 "ATPase activity" evidence=IDA

UNIPROTKB|P33993 MCM7 "DNA replication licensing factor MCM7" [Homo sapiens (taxid:9606)]

 Score = 182 (69.1 bits), Expect = 5.4e-13, P = 5.4e-13
 Identities = 32/54 (59%), Positives = 43/54 (79%)

Query:     1 MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQMGSSPAQVVKL 54
             MCPS++CQ N+SGGRLYLQTRGS+F+KFQE+K+QEH+   P+  G+ P  +  L
Sbjct:   205 MCPSQECQTNRSGGRLYLQTRGSRFIKFQEMKMQEHSDQVPV--GNIPRSITVL 256

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006268 "DNA unwinding involved in replication" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0071364 "cellular response to epidermal growth factor stimulus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0042325 "regulation of phosphorylation" evidence=IMP

GO:0006974 "response to DNA damage stimulus" evidence=IMP

GO:0003677 "DNA binding" evidence=TAS

GO:0042555 "MCM complex" evidence=IDA;IMP

GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA

GO:0000785 "chromatin" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006260 "DNA replication" evidence=TAS

GO:0006271 "DNA strand elongation involved in DNA replication" evidence=TAS

FB|FBgn0020633 Mcm7 "Minichromosome maintenance 7" [Drosophila melanogaster (taxid:7227)]

 Score = 179 (68.1 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 31/41 (75%), Positives = 38/41 (92%)

Query:     2 CPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPL 42
             CPS+DC+VNK+GGRLYLQTRGSKFVKFQE+K+QEH+   P+
Sbjct:   206 CPSDDCRVNKAGGRLYLQTRGSKFVKFQEVKMQEHSDQVPV 246

GO:0003682 "chromatin binding" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISS

GO:0005656 "pre-replicative complex" evidence=ISS;NAS

GO:0006267 "pre-replicative complex assembly" evidence=ISS;NAS

GO:0042555 "MCM complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0043138 "3'-5' DNA helicase activity" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P33993	MCM7_HUMAN	3, ., 6, ., 4, ., 1, 2	0.5818	0.4649	0.0737	yes	N/A
Q3ZBH9	MCM7_BOVIN	3, ., 6, ., 4, ., 1, 2	0.6	0.4649	0.0737	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	114
smart00350	509	smart00350, MCM, minichromosome maintenance protei	0.002
COG1241	682	COG1241, MCM2, Predicted ATPase involved in replic	0.002

>gnl|CDD|214631 smart00350, MCM, minichromosome maintenance proteins

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 1  MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEH 36
          +CP  +CQ            R S F+ FQ++K+QE 
Sbjct: 61 VCPPRECQSPTP--FSLNHER-STFIDFQKIKLQES 93

Length = 509

>gnl|CDD|224162 COG1241, MCM2, Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)

Query: 1   MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQE 35
            C +         G L L  R S+F+ FQ++K+QE
Sbjct: 153 ECENCGK---FGKGPLKLVPRKSEFIDFQKVKIQE 184

Length = 682

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
KOG0482|consensus	721		99.81
KOG0480|consensus	764		99.55
smart00350	509	MCM minichromosome maintenance proteins.	99.44
COG1241	682	MCM2 Predicted ATPase involved in replication cont	99.22
KOG0479|consensus	818		99.19
PTZ00111	915	DNA replication licensing factor MCM4; Provisional	99.13
KOG0477|consensus	854		98.97
KOG0478|consensus	804		98.41
KOG0481|consensus	729		98.36
cd04486	78	YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fol	81.2

>KOG0482|consensus

Probab=99.81  E-value=3.9e-21  Score=169.16  Aligned_cols=67  Identities=51%  Similarity=0.877  Sum_probs=65.2

Q ss_pred             CCCcccccCCCCccceEEEecCceeeeceEeeeeccCCCCCCCC---------------CCCCCcEEEEEc---CCCCcc
Q psy13877          1 MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQM---------------GSSPAQVVKLTN---PPVQTG   62 (114)
Q Consensus         1 ~Cps~~C~~n~s~G~l~L~~r~SkF~dfQeVrIQE~peeVP~G~---------------~~kPGD~V~lTG---p~p~tg   62 (114)
                      .|||+.|+.|+.+|+|+|++|+|||++|||+++||++++||.||               .|+|||+|.|+|   |.||+|
T Consensus       205 ~CpS~eC~~n~~~G~L~lqtRgSKFikfQe~kmQEls~qVPvG~IPRsltv~~~ge~tr~~~PGDvV~vsGiFLP~pytG  284 (721)
T KOG0482|consen  205 ECPSEECRTNKAGGRLYLQTRGSKFIKFQEVKMQELSDQVPVGHIPRSLTVHVYGEMTRKCQPGDVVVVSGIFLPIPYTG  284 (721)
T ss_pred             hCChHHhhhcccCCeEEEEecccccchhhhhhHHHHhccCCCCccCceeEEEEecccceecCCCCEEEEeeeecccchhh
Confidence            49999999999999999999999999999999999999999999               589999999999   999999


Q ss_pred             eeeee
Q psy13877         63 QKMIV   67 (114)
Q Consensus        63 f~a~~   67 (114)
                      |++++
T Consensus       285 fr~~~  289 (721)
T KOG0482|consen  285 FRALK  289 (721)
T ss_pred             HHHHH
Confidence            99987

>KOG0480|consensus

Probab=99.55  E-value=3e-15  Score=133.99  Aligned_cols=86  Identities=22%  Similarity=0.414  Sum_probs=69.8

Q ss_pred             CCCcccccCCCCccceEEEecCceeeeceEeeeeccCCCCCCCC---------------CCCCCcEEEEEc---CCCCcc
Q psy13877          1 MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQM---------------GSSPAQVVKLTN---PPVQTG   62 (114)
Q Consensus         1 ~Cps~~C~~n~s~G~l~L~~r~SkF~dfQeVrIQE~peeVP~G~---------------~~kPGD~V~lTG---p~p~tg   62 (114)
                      .|||+.|.   ++-+|.+....|+|+|||+|||||+.+++|.|+               .|+|||+|+|||   .+|+..
T Consensus       181 ~C~np~C~---nrr~f~l~~~~s~f~D~QkIrIQE~~~E~p~GsiPRtvdviLr~dlVe~~~pGD~v~~TGiliVvpdv~  257 (764)
T KOG0480|consen  181 KCPNPVCS---NRRSFTLDRSSSRFLDWQKIRIQELQAEIPRGSIPRTVDVILRGDLVETAQPGDKVDITGILIVVPDVS  257 (764)
T ss_pred             cCCCcccc---CCceeeeecccceeeeeeeeehhhhhhhCCCCCCCceeEEEEhhhhHhhcCCCCEEEEEEEEEEecChH
Confidence            49999994   566899999999999999999999999999999               589999999999   667643


Q ss_pred             eeeeeecCCCCCcchhhhhhhcCCccccccchhhhh
Q psy13877         63 QKMIVLTNNSNPPALEEKKFDRGIYNNEGLIASKLM   98 (114)
Q Consensus        63 f~a~~l~n~v~~~~~~~~~~~~g~~~~~g~~~~~~~   98 (114)
                      .        +..|.++.+.- ||+...+|++|++-+
T Consensus       258 ~--------l~~pgsk~~n~-r~~~~~~~i~~lkal  284 (764)
T KOG0480|consen  258 Q--------LGGPGSKAENN-RGGETGDGITGLKAL  284 (764)
T ss_pred             H--------hcCCccccccc-cCCCcccceeeehhc
Confidence            3        44455666533 366556899998765

>smart00350 MCM minichromosome maintenance proteins

Probab=99.44  E-value=1.6e-13  Score=117.25  Aligned_cols=53  Identities=30%  Similarity=0.616  Sum_probs=48.4

Q ss_pred             CCCcccccCCCCccceEEEecCceeeeceEeeeeccCCCCCCCC---------------CCCCCcEEEEEc
Q psy13877          1 MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQM---------------GSSPAQVVKLTN   56 (114)
Q Consensus         1 ~Cps~~C~~n~s~G~l~L~~r~SkF~dfQeVrIQE~peeVP~G~---------------~~kPGD~V~lTG   56 (114)
                      .|+++.|   +++++|.++...|+|+|||+|+|||.|+++|.|+               .++|||+|.|+|
T Consensus        61 ~C~~~~C---~~~~~f~l~~~~s~~~D~Q~I~iQE~~e~~p~G~~Prsi~v~l~~dLvd~~~PGD~V~i~G  128 (509)
T smart00350       61 VCPPREC---QSPTPFSLNHERSTFIDFQKIKLQESPEEVPAGQLPRSVDVILDGDLVDKAKPGDRVEVTG  128 (509)
T ss_pred             cCCCCcC---CCCCceEeccCCCeEEEEEEEEEEcCcccCCCCCCCcEEEEEEcccccCcccCCCEEEEEE
Confidence            3888778   4566799999999999999999999999999999               589999999999

>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]

Probab=99.22  E-value=1.7e-11  Score=109.97  Aligned_cols=73  Identities=26%  Similarity=0.328  Sum_probs=60.9

Q ss_pred             CCcccccCCCCccceEEEecCceeeeceEeeeeccCCCCCCCC---------------CCCCCcEEEEEc---CCC----
Q psy13877          2 CPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQM---------------GSSPAQVVKLTN---PPV----   59 (114)
Q Consensus         2 Cps~~C~~n~s~G~l~L~~r~SkF~dfQeVrIQE~peeVP~G~---------------~~kPGD~V~lTG---p~p----   59 (114)
                      |++  | ....+++|.+..+.|+|+|||+|+|||.|+.+|+|+               .++|||+|.+||   +.|    
T Consensus       154 C~~--~-~~~~~~~~~~~~~~s~f~d~Q~vkiQE~pe~~p~g~~Prs~~vil~~dlv~~~~pGdrV~itGi~~~~~~~~~  230 (682)
T COG1241         154 CEN--C-GKFGKGPLKLVPRKSEFIDFQKVKIQELPELVPGGELPRSIEVILEDDLVDSVRPGDRVKITGVVRIVPSRSL  230 (682)
T ss_pred             CCC--c-cccCCCceEEecCcceeeeceEEEEecCcccCCCCCCCceEEEEEecCcccccCCCCEEEEEEEEeccccccc
Confidence            777  4 223678999999999999999999999999999998               589999999999   444    


Q ss_pred             -----CcceeeeeecCCCCCcch
Q psy13877         60 -----QTGQKMIVLTNNSNPPAL   77 (114)
Q Consensus        60 -----~tgf~a~~l~n~v~~~~~   77 (114)
                           ...|+.++.+|++.....
T Consensus       231 ~~~~~~~~~~~~~~a~~v~~~~~  253 (682)
T COG1241         231 SGRRKGPVFEIYLEANSVEKLDK  253 (682)
T ss_pred             ccccCCceEEEEEEEEEEEeccc
Confidence                 334788888888776664

>KOG0479|consensus

Probab=99.19  E-value=2e-11  Score=109.62  Aligned_cols=67  Identities=18%  Similarity=0.223  Sum_probs=59.1

Q ss_pred             cceEEEecCceeeeceEeeeeccCCCCCCCC---------------CCCCCcEEEEEc-----CC-----CCcceeeeee
Q psy13877         14 GRLYLQTRGSKFVKFQELKVQEHTSNQPLQM---------------GSSPAQVVKLTN-----PP-----VQTGQKMIVL   68 (114)
Q Consensus        14 G~l~L~~r~SkF~dfQeVrIQE~peeVP~G~---------------~~kPGD~V~lTG-----p~-----p~tgf~a~~l   68 (114)
                      -.|......|+|.|||.|.|||+||..|+|+               ++||||+|.|.|     |.     ...+|++++|
T Consensus       180 N~L~TEyGlS~ykDHQtitiQEmPE~APaGQLPRSVDvilddDLVD~~KPGDRV~ivG~yr~Lp~k~~g~tsg~FRTvli  259 (818)
T KOG0479|consen  180 NLLETEYGLSVYKDHQTITIQEMPEKAPAGQLPRSVDVILDDDLVDRVKPGDRVNIVGIYRSLPGKSNGNTSGTFRTVLI  259 (818)
T ss_pred             CeeeEeecceeeecccEEEeeeccccCCCCCCCcceeEEecccccccCCCCCeeEEEEEEeeccCccCCcccceeEEEEE
Confidence            4688889999999999999999999999999               689999999999     32     2344999999


Q ss_pred             cCCCCCcchhhh
Q psy13877         69 TNNSNPPALEEK   80 (114)
Q Consensus        69 ~n~v~~~~~~~~   80 (114)
                      +|||.+++.+++
T Consensus       260 aNni~~l~ke~~  271 (818)
T KOG0479|consen  260 ANNIELLSKEAA  271 (818)
T ss_pred             eccHHhhccccc
Confidence            999999998754

>PTZ00111 DNA replication licensing factor MCM4; Provisional

Probab=99.13  E-value=5.9e-11  Score=109.20  Aligned_cols=50  Identities=12%  Similarity=0.076  Sum_probs=44.6

Q ss_pred             ccCCCCccceEEEecCceeeeceEeeeeccCCCCCCCC-----------------------------------CCCCCcE
Q psy13877          7 CQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQM-----------------------------------GSSPAQV   51 (114)
Q Consensus         7 C~~n~s~G~l~L~~r~SkF~dfQeVrIQE~peeVP~G~-----------------------------------~~kPGD~   51 (114)
                      |..|+++++|.|+.+.|+|+|||+|+|||.|+.+|.|+                                   .|+|||+
T Consensus       286 C~~C~~~~~f~l~~~~s~f~D~Q~IklQE~pe~vp~G~~P~~~~~~~~~~~~~~~~~~~~rsi~v~l~dDLVD~v~PGDr  365 (915)
T PTZ00111        286 CNECNSKYTFELNHNMCVYSTKKIVKLLQSNSSLNNPDKDGLDNSVDNSGLNGEIYMKDNEVINLNLYDDLIDSVKTGDR  365 (915)
T ss_pred             CCCCCCCCCeEEccCccEEEeeeEEEEeeCcccCCCCCCCccccccccccccccccccCCceEEEEEecchhccCCCCCE
Confidence            44447889999999999999999999999999998763                                   4799999


Q ss_pred             EEEEc
Q psy13877         52 VKLTN   56 (114)
Q Consensus        52 V~lTG   56 (114)
                      |+|||
T Consensus       366 V~VtG  370 (915)
T PTZ00111        366 VTVVG  370 (915)
T ss_pred             EEEEE
Confidence            99999

>KOG0477|consensus

Probab=98.97  E-value=3.4e-10  Score=102.24  Aligned_cols=69  Identities=19%  Similarity=0.419  Sum_probs=59.0

Q ss_pred             CCcccccCCCCccceEEEecCceeeeceEeeeeccCCCCCCCC---------------CCCCCcEEEEEc--CCCCcc--
Q psy13877          2 CPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQM---------------GSSPAQVVKLTN--PPVQTG--   62 (114)
Q Consensus         2 Cps~~C~~n~s~G~l~L~~r~SkF~dfQeVrIQE~peeVP~G~---------------~~kPGD~V~lTG--p~p~tg--   62 (114)
                      ||+  |   +++|+|.++++...|.+||+|+|||.|..||+|.               .|+|||.|.+||  ..-|.|  
T Consensus       318 C~~--c---qSkGpf~vn~e~TvyrnYQritiQEspg~v~~GrlPRsk~vILl~DLvD~~kpGdEievTGIy~nn~d~sL  392 (854)
T KOG0477|consen  318 CPE--C---QSKGPFEVNVEETVYRNYQRITIQESPGTVPAGRLPRSKEVILLADLVDSCKPGDEIEVTGIYTNNFDGSL  392 (854)
T ss_pred             Ccc--c---cCCCCCccchhhhhhcccceeeeccCCCcCCCCccccchhheehhhhhhhcCCCcceEEeeeecccccccc
Confidence            666  6   7899999999999999999999999999999999               589999999999  333333  


Q ss_pred             --------eeeeeecCCCCCc
Q psy13877         63 --------QKMIVLTNNSNPP   75 (114)
Q Consensus        63 --------f~a~~l~n~v~~~   75 (114)
                              |.+++++|.|.--
T Consensus       393 N~kngFpvfatvi~ANhV~~k  413 (854)
T KOG0477|consen  393 NTKNGFPVFATVIEANHVVKK  413 (854)
T ss_pred             cccCCccccceeheehhhhhh
Confidence                    7889999976543

>KOG0478|consensus

Probab=98.41  E-value=2.1e-07  Score=84.75  Aligned_cols=46  Identities=24%  Similarity=0.304  Sum_probs=42.8

Q ss_pred             CCccceEEEecCceeeeceEeeeeccCCCCCCCC---------------CCCCCcEEEEEc
Q psy13877         11 KSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQM---------------GSSPAQVVKLTN   56 (114)
Q Consensus        11 ~s~G~l~L~~r~SkF~dfQeVrIQE~peeVP~G~---------------~~kPGD~V~lTG   56 (114)
                      +.+-.|.|....|.|.|-|-||+||.|+.+|.|+               .++|||+|.|||
T Consensus       293 ~~~~~~~Lihnrs~F~dkQviklqEspd~~p~g~tPhtv~v~~~~dLVD~v~pGDrv~VTG  353 (804)
T KOG0478|consen  293 GTTNSFQLLHNRSEFADKQVIKLQESPDDMPEGSTPHTVSVVLHNDLVDKVRPGDRVEVTG  353 (804)
T ss_pred             cCcccceeehhhhhhcccceeeeeeccccCcCCCCCceEEEEEehhhhhccCCCCeEEEEE
Confidence            5555699999999999999999999999999999               689999999999

>KOG0481|consensus

Probab=98.36  E-value=3.3e-07  Score=82.05  Aligned_cols=43  Identities=26%  Similarity=0.297  Sum_probs=41.0

Q ss_pred             cceEEEecCceeeeceEeeeeccCCCCCCCC---------------CCCCCcEEEEEc
Q psy13877         14 GRLYLQTRGSKFVKFQELKVQEHTSNQPLQM---------------GSSPAQVVKLTN   56 (114)
Q Consensus        14 G~l~L~~r~SkF~dfQeVrIQE~peeVP~G~---------------~~kPGD~V~lTG   56 (114)
                      -+|.+.++.|+|+|+|.+++||.||.||.|+               .+.||.+|+|+|
T Consensus       202 DPyii~pdks~~vD~QtLKLQE~pe~VP~GE~PRhl~L~~dRyL~~kvvPG~RvtI~G  259 (729)
T KOG0481|consen  202 DPYIIMPDKSKCVDQQTLKLQELPEDVPVGEMPRHLQLFCDRYLTNKVVPGNRVTIMG  259 (729)
T ss_pred             CCEEEcccccceeehhheehhhCcccCCcCcCcchhhhhhhHHHhccccCCceEEEEE
Confidence            4689999999999999999999999999999               589999999999

>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR

Probab=81.20  E-value=1.9  Score=28.81  Aligned_cols=25  Identities=12%  Similarity=0.147  Sum_probs=19.7

Q ss_pred             CCCCCcEEEEEc-CCCCcceeeeeec
Q psy13877         45 GSSPAQVVKLTN-PPVQTGQKMIVLT   69 (114)
Q Consensus        45 ~~kPGD~V~lTG-p~p~tgf~a~~l~   69 (114)
                      .+++||+|.|+| ...|.|...|..+
T Consensus        44 ~~~~Gd~V~vtG~v~ey~g~tql~~~   69 (78)
T cd04486          44 DVAVGDLVRVTGTVTEYYGLTQLTAV   69 (78)
T ss_pred             CCCCCCEEEEEEEEEeeCCeEEEccC
Confidence            478999999999 8888886665533

YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	114
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	6e-08

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Length = 595

 Score = 48.0 bits (115), Expect = 6e-08
 Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 2/48 (4%)

Query: 1   MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQMGSSP 48
           +     C      G+  L    +K + +Q+  +QE     P   G  P
Sbjct: 159 LEMPTICPKCGKPGQFRLIPEKTKLIDWQKAVIQERPEEVP--SGQLP 204

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	114
2vl6_A	268	SSO MCM N-TER, minichromosome maintenance protein	99.66
1ltl_A	279	DNA replication initiator (CDC21/CDC54); HET: DNA;	99.63
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	99.42
3f8t_A	506	Predicted ATPase involved in replication control,	99.08

>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}

Probab=99.66  E-value=2.7e-17  Score=128.14  Aligned_cols=64  Identities=17%  Similarity=0.258  Sum_probs=54.3

Q ss_pred             CCccceEEEecCceeeeceEeeeeccCCCCCCCC---------------CCCCCcEEEEEc---CCCCcc--------ee
Q psy13877         11 KSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQM---------------GSSPAQVVKLTN---PPVQTG--------QK   64 (114)
Q Consensus        11 ~s~G~l~L~~r~SkF~dfQeVrIQE~peeVP~G~---------------~~kPGD~V~lTG---p~p~tg--------f~   64 (114)
                      +++|+|.++.+.|+|+|||+|||||+|+++|.|+               .|+|||+|+|||   +.|+.+        |+
T Consensus       175 ~~~~~~~l~~~~s~f~D~Q~ikiQE~pe~vp~G~~Prsi~v~l~~dLvd~~~PGDrV~vtGI~~~~~~~~~~~~~~~~~~  254 (268)
T 2vl6_A          175 GKPGQFRLIPEKTKLIDWQKAVIQERPEEVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQDSPVKRGSRAVFD  254 (268)
T ss_dssp             CCBCEEEECGGGCEEEEEEEEEEECCGGGSCTTSCCCEEEEEEEGGGTTSSCTTCEEEEEEEEEEECSSTTCCSSCCEEE
T ss_pred             CCCCCEEEecCccEEEeeEEEEEEeCCCCCCCCCCCcEEEEEEccCccCcccCCCEEEEEEEEEEeecccccCCCceEEE
Confidence            6778999999999999999999999999999999               689999999999   444432        66


Q ss_pred             eeeecCCCCC
Q psy13877         65 MIVLTNNSNP   74 (114)
Q Consensus        65 a~~l~n~v~~   74 (114)
                      ..+.+|+|..
T Consensus       255 ~yl~an~I~~  264 (268)
T 2vl6_A          255 IYMKVSSIEV  264 (268)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            7777776643

>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11

Probab=99.63  E-value=2e-16  Score=124.53  Aligned_cols=69  Identities=23%  Similarity=0.305  Sum_probs=58.2

Q ss_pred             CCcccccCCCCccceEEEecCceeeeceEeeeeccCCCCCCCC---------------CCCCCcEEEEEc---CCCC---
Q psy13877          2 CPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQM---------------GSSPAQVVKLTN---PPVQ---   60 (114)
Q Consensus         2 Cps~~C~~n~s~G~l~L~~r~SkF~dfQeVrIQE~peeVP~G~---------------~~kPGD~V~lTG---p~p~---   60 (114)
                      ||+  |   +++| |.++.+.|+|+|||+|+|||+|+++|.|+               .++|||+|+|||   +.+.   
T Consensus       159 Cp~--C---~~~~-f~l~~~~s~f~D~Q~ikiQE~pe~vp~G~~Prsi~V~l~~dLvd~~~PGDrV~vtGI~~~~~~~~~  232 (279)
T 1ltl_A          159 CSE--C---GGRS-FRLLQDESEFLDTQTLKLQEPLENLSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTLRTVRDERT  232 (279)
T ss_dssp             CTT--T---CCCC-EEECGGGCEEEEEEEEEEECCSTTCCSSCCCCEEEEEEEGGGTTCCCTTCEEEEEEEEEEEEETTT
T ss_pred             CCC--C---CCCC-cEEeccccEEEeeEEEEEecCcccCCCCCCCeEEEEEEcccccCccCCCCEEEEEEEEEEeeCCCC
Confidence            665  7   5667 99999999999999999999999999999               689999999999   3332   


Q ss_pred             cceeeeeecCCCCCcc
Q psy13877         61 TGQKMIVLTNNSNPPA   76 (114)
Q Consensus        61 tgf~a~~l~n~v~~~~   76 (114)
                      .-|+..+.+|+|....
T Consensus       233 ~~~~~~l~a~~I~~~~  248 (279)
T 1ltl_A          233 KRFKNFIYGNYTEFLE  248 (279)
T ss_dssp             TEEEEEEEEEECCBC-
T ss_pred             ceEEEEEEEEEEEEec
Confidence            2289999999887654

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=99.42  E-value=9.3e-14  Score=118.67  Aligned_cols=51  Identities=22%  Similarity=0.345  Sum_probs=46.6

Q ss_pred             CCccceEEEecCceeeeceEeeeeccCCCCCCCC---------------CCCCCcEEEEEc---CCCCc
Q psy13877         11 KSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQM---------------GSSPAQVVKLTN---PPVQT   61 (114)
Q Consensus        11 ~s~G~l~L~~r~SkF~dfQeVrIQE~peeVP~G~---------------~~kPGD~V~lTG---p~p~t   61 (114)
                      +++|+|.++.+.|+|+|||+|+|||+|+++|.|+               .++|||+|.|||   +.++.
T Consensus       169 ~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g~~pr~~~v~l~~dlv~~~~pGd~v~v~Gi~~~~~~~  237 (595)
T 3f9v_A          169 GKPGQFRLIPEKTKLIDWQKAVIQERPEEVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQDS  237 (595)
T ss_dssp             CCCSEEECCSTTCEEEEEEEEEEECCTTTSCTTSCCCEEEEEEEGGGTTCSCSSCEEEEEEECCCCCSS
T ss_pred             CCCCceEEeccCceeeeeEEEEEEeccccCCCCCCCceEEEEEecccccccccCCEEEEEEEEEecccc
Confidence            6778999999999999999999999999999999               689999999999   55554

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}

Probab=99.08  E-value=4.9e-12  Score=108.98  Aligned_cols=52  Identities=8%  Similarity=-0.059  Sum_probs=48.5

Q ss_pred             ccccCCCCccceEEEecCcee--eeceEeeeeccCCCCCCCC---------------------CCCCCcEEEEEc
Q psy13877          5 EDCQVNKSGGRLYLQTRGSKF--VKFQELKVQEHTSNQPLQM---------------------GSSPAQVVKLTN   56 (114)
Q Consensus         5 ~~C~~n~s~G~l~L~~r~SkF--~dfQeVrIQE~peeVP~G~---------------------~~kPGD~V~lTG   56 (114)
                      +.|..|+++|.|+++++.+||  +|||+|+|||+|+++|.|+                     .|+|||+|.|+|
T Consensus        91 ~~~~~~~~~g~~~~~~r~~k~~~~d~Q~IkiQE~pe~~~~G~~Prsi~v~l~~dLvd~~~~~~~~~pGd~V~v~G  165 (506)
T 3f8t_A           91 DVEPRVRFRGLPHRFRRVERIRPMDGALISIEGVVREVRGAERLEHAIVDTGSELVAVRLHGHRLGPGLRVEILG  165 (506)
T ss_dssp             TSCCCEEEECCCGGGSSCSCCGGGTTCEEEEEEEEEEEEESSSEEEEEEECSSSEEEEECTTCCCCTTCEEEEEE
T ss_pred             CCCcccccCCcccccchHhhccccccEEEEEecCcccCCCCCCCceEEEEecccccCcccccccccCCCEEEEEE
Confidence            458888999999999999997  9999999999999999999                     489999999999

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	114
d1ltla_	239	DNA replication initiator (cdc21/cdc54) N-terminal	99.41

>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54) N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: DNA replication initiator (cdc21/cdc54) N-terminal domain
domain: DNA replication initiator (cdc21/cdc54) N-terminal domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.41  E-value=1.4e-13  Score=104.20  Aligned_cols=59  Identities=24%  Similarity=0.259  Sum_probs=49.3

Q ss_pred             ceEEEecCceeeeceEeeeeccCCCCCCCC---------------CCCCCcEEEEEc---CCC---CcceeeeeecCCCC
Q psy13877         15 RLYLQTRGSKFVKFQELKVQEHTSNQPLQM---------------GSSPAQVVKLTN---PPV---QTGQKMIVLTNNSN   73 (114)
Q Consensus        15 ~l~L~~r~SkF~dfQeVrIQE~peeVP~G~---------------~~kPGD~V~lTG---p~p---~tgf~a~~l~n~v~   73 (114)
                      .|.+..+.|+|+|||+|+|||.|+++|.|+               .++|||+|.|+|   +.+   ...++..+.+|+|.
T Consensus       158 ~f~~~~~~s~~~d~Q~i~iQE~~e~~~~G~~Pr~i~v~l~~dlvd~~~pGd~V~i~GI~~~~~~~~~~~~~~~i~a~~Ie  237 (239)
T d1ltla_         158 SFRLLQDESEFLDTQTLKLQEPLENLSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTLRTVRDERTKRFKNFIYGNYTE  237 (239)
T ss_dssp             CEEECGGGCEEEEEEEEEEECCSTTCCSSCCCCEEEEEEEGGGTTCCCTTCEEEEEEEEEEEEETTTTEEEEEEEEEECC
T ss_pred             ccEEccCcceEeeeEEEEEecccccCCCCCCCcEEEEEEeccccCccCCCCEEEEEEEEEEeecCCCCceEEEEEEEEEE
Confidence            599999999999999999999999999998               689999999999   222   23356666677654