Psyllid ID: psy13979


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------
MPVPVGAYAGQPSCFDRMKVGFMIGFSVGMATGGLFGGFNALRYGLRGAELLKNVGKVMVQGGGSFGTFMAIGAGIRC
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEccccHHHHHHHHHHHHHcccHHHHHHHHHccccc
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHccEEEc
mpvpvgayagqpscfdrmKVGFMIGFSVGMATGGLFGGFNALRYGLRGAELLKNVGKVmvqgggsfgTFMAIGAGIRC
mpvpvgayagqpsCFDRMKVGFMIGFSVGMATGGLFGGFNALRYGLRGAELLKNVGKVMVQGGGSFGTFMAIGAGIRC
MPVPVGAYAGQPSCFDRMKVGFMIGFSVGMATGGLFGGFNALRYGLRGAELLKNVGKVMVQGGGSFGTFMAIGAGIRC
******AYAGQPSCFDRMKVGFMIGFSVGMATGGLFGGFNALRYGLRGAELLKNVGKVMVQGGGSFGTFMAIGAGI**
***************DRMKVGFMIGFSVGMATGGLFGGFNALRYGLRGAELLKNVGKVMVQGGGSFGTFMAIGAGIRC
MPVPVGAYAGQPSCFDRMKVGFMIGFSVGMATGGLFGGFNALRYGLRGAELLKNVGKVMVQGGGSFGTFMAIGAGIRC
*********GQPSCFDRMKVGFMIGFSVGMATGGLFGGFNALRYGLRGAELLKNVGKVMVQGGGSFGTFMAIGAGIRC
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoo
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoo
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MPVPVGAYAGQPSCFDRMKVGFMIGFSVGMATGGLFGGFNALRYGLRGAELLKNVGKVMVQGGGSFGTFMAIGAGIRC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query78 2.2.26 [Sep-21-2011]
A4QNF379 Reactive oxygen species m yes N/A 1.0 0.987 0.683 7e-23
Q6NYD180 Reactive oxygen species m yes N/A 1.0 0.975 0.662 1e-22
Q4V7T979 Reactive oxygen species m N/A N/A 1.0 0.987 0.670 2e-22
P6060379 Reactive oxygen species m yes N/A 1.0 0.987 0.645 5e-21
P6060279 Reactive oxygen species m yes N/A 1.0 0.987 0.645 5e-21
Q3SZV879 Reactive oxygen species m yes N/A 1.0 0.987 0.645 5e-21
A1XQR679 Reactive oxygen species m yes N/A 1.0 0.987 0.632 4e-20
Q02889113 Protein MGR2 OS=Saccharom yes N/A 0.987 0.681 0.402 4e-08
>sp|A4QNF3|ROMO1_XENTR Reactive oxygen species modulator 1 OS=Xenopus tropicalis GN=romo1 PE=3 SV=1 Back     alignment and function desciption
 Score =  105 bits (263), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 54/79 (68%), Positives = 64/79 (81%), Gaps = 1/79 (1%)

Query: 1  MPVPVGAY-AGQPSCFDRMKVGFMIGFSVGMATGGLFGGFNALRYGLRGAELLKNVGKVM 59
          MPV VG Y   QPSCFDR+K+GFM+GF+VGMA G LFG F+ LR+G+RG EL+  VGK M
Sbjct: 1  MPVAVGPYGQSQPSCFDRVKMGFMMGFAVGMAAGALFGTFSCLRFGMRGRELMGGVGKTM 60

Query: 60 VQGGGSFGTFMAIGAGIRC 78
          +Q GG+FGTFMAIG GIRC
Sbjct: 61 MQSGGTFGTFMAIGMGIRC 79




Induces production of reactive oxygen species (ROS) which are necessary for cell proliferation. May play a role in inducing oxidative DNA damage and replicative senescence. May play a role in the coordination of mitochondrial morphology and cell proliferation.
Xenopus tropicalis (taxid: 8364)
>sp|Q6NYD1|ROMO1_DANRE Reactive oxygen species modulator 1 OS=Danio rerio GN=romo1 PE=3 SV=1 Back     alignment and function description
>sp|Q4V7T9|ROMO1_XENLA Reactive oxygen species modulator 1 OS=Xenopus laevis GN=romo1 PE=3 SV=1 Back     alignment and function description
>sp|P60603|ROMO1_MOUSE Reactive oxygen species modulator 1 OS=Mus musculus GN=Romo1 PE=2 SV=1 Back     alignment and function description
>sp|P60602|ROMO1_HUMAN Reactive oxygen species modulator 1 OS=Homo sapiens GN=ROMO1 PE=1 SV=1 Back     alignment and function description
>sp|Q3SZV8|ROMO1_BOVIN Reactive oxygen species modulator 1 OS=Bos taurus GN=ROMO1 PE=3 SV=1 Back     alignment and function description
>sp|A1XQR6|ROMO1_PIG Reactive oxygen species modulator 1 OS=Sus scrofa GN=ROMO1 PE=3 SV=1 Back     alignment and function description
>sp|Q02889|MGR2_YEAST Protein MGR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MGR2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query78
38386467778 PREDICTED: reactive oxygen species modul 1.0 1.0 0.769 4e-26
19475154579 GF23691 [Drosophila ananassae] gi|190625 1.0 0.987 0.746 1e-25
19545097779 GK13750 [Drosophila willistoni] gi|19416 1.0 0.987 0.746 1e-25
19512651381 GI13101 [Drosophila mojavensis] gi|19391 1.0 0.962 0.716 7e-25
5839390781 AGAP012145-PA [Anopheles gambiae str. PE 1.0 0.962 0.777 7e-25
19537890879 GJ13848 [Drosophila virilis] gi|19415538 1.0 0.987 0.721 8e-25
35761240979 hypothetical protein KGM_08457 [Danaus p 1.0 0.987 0.759 9e-25
2135743779 CG6878 [Drosophila melanogaster] gi|1948 1.0 0.987 0.708 9e-25
19544133879 GK20403 [Drosophila willistoni] gi|19416 1.0 0.987 0.708 1e-24
346470021132 hypothetical protein [Amblyomma maculatu 1.0 0.590 0.721 1e-24
>gi|383864677|ref|XP_003707804.1| PREDICTED: reactive oxygen species modulator 1-like [Megachile rotundata] Back     alignment and taxonomy information
 Score =  121 bits (304), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 60/78 (76%), Positives = 67/78 (85%)

Query: 1  MPVPVGAYAGQPSCFDRMKVGFMIGFSVGMATGGLFGGFNALRYGLRGAELLKNVGKVMV 60
          MPV  G Y   PSC+DRMK+GFMIGF VGMA+G LFGGF+ALRYGLRG EL+ NVGKVM+
Sbjct: 1  MPVVSGVYQQAPSCWDRMKLGFMIGFCVGMASGALFGGFSALRYGLRGRELINNVGKVML 60

Query: 61 QGGGSFGTFMAIGAGIRC 78
          QGGG+FGTFMAIG GIRC
Sbjct: 61 QGGGTFGTFMAIGTGIRC 78




Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194751545|ref|XP_001958086.1| GF23691 [Drosophila ananassae] gi|190625368|gb|EDV40892.1| GF23691 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|195450977|ref|XP_002072714.1| GK13750 [Drosophila willistoni] gi|194168799|gb|EDW83700.1| GK13750 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|195126513|ref|XP_002007715.1| GI13101 [Drosophila mojavensis] gi|193919324|gb|EDW18191.1| GI13101 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|58393907|ref|XP_320383.2| AGAP012145-PA [Anopheles gambiae str. PEST] gi|55234515|gb|EAA00196.2| AGAP012145-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|195378908|ref|XP_002048223.1| GJ13848 [Drosophila virilis] gi|194155381|gb|EDW70565.1| GJ13848 [Drosophila virilis] Back     alignment and taxonomy information
>gi|357612409|gb|EHJ67978.1| hypothetical protein KGM_08457 [Danaus plexippus] Back     alignment and taxonomy information
>gi|21357437|ref|NP_648757.1| CG6878 [Drosophila melanogaster] gi|194872687|ref|XP_001973063.1| GG15884 [Drosophila erecta] gi|195327733|ref|XP_002030572.1| GM25515 [Drosophila sechellia] gi|195495137|ref|XP_002095139.1| GE22228 [Drosophila yakuba] gi|195590411|ref|XP_002084939.1| GD14530 [Drosophila simulans] gi|7294305|gb|AAF49654.1| CG6878 [Drosophila melanogaster] gi|17944580|gb|AAL48177.1| RH56103p [Drosophila melanogaster] gi|190654846|gb|EDV52089.1| GG15884 [Drosophila erecta] gi|194119515|gb|EDW41558.1| GM25515 [Drosophila sechellia] gi|194181240|gb|EDW94851.1| GE22228 [Drosophila yakuba] gi|194196948|gb|EDX10524.1| GD14530 [Drosophila simulans] gi|220950798|gb|ACL87942.1| CG6878-PA [synthetic construct] gi|220959574|gb|ACL92330.1| CG6878-PA [synthetic construct] Back     alignment and taxonomy information
>gi|195441338|ref|XP_002068469.1| GK20403 [Drosophila willistoni] gi|194164554|gb|EDW79455.1| GK20403 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|346470021|gb|AEO34855.1| hypothetical protein [Amblyomma maculatum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query78
UNIPROTKB|A4QNF379 romo1 "Reactive oxygen species 1.0 0.987 0.683 1.1e-25
UNIPROTKB|Q4V7T979 romo1 "Reactive oxygen species 1.0 0.987 0.670 2.2e-25
ZFIN|ZDB-GENE-040426-176880 zgc:73345 "zgc:73345" [Danio r 1.0 0.975 0.662 4.6e-25
UNIPROTKB|E1BRT479 ROMO1 "Uncharacterized protein 1.0 0.987 0.670 7.6e-25
UNIPROTKB|Q3SZV879 ROMO1 "Reactive oxygen species 1.0 0.987 0.645 6.8e-24
UNIPROTKB|P6060279 ROMO1 "Reactive oxygen species 1.0 0.987 0.645 6.8e-24
UNIPROTKB|F2Z5I379 ROMO1 "Reactive oxygen species 1.0 0.987 0.645 6.8e-24
MGI|MGI:191431779 Romo1 "reactive oxygen species 1.0 0.987 0.645 6.8e-24
RGD|158711179 Romo1 "reactive oxygen species 1.0 0.987 0.645 6.8e-24
UNIPROTKB|A1XQR679 ROMO1 "Reactive oxygen species 1.0 0.987 0.632 2.9e-23
UNIPROTKB|A4QNF3 romo1 "Reactive oxygen species modulator 1" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 54/79 (68%), Positives = 64/79 (81%)

Query:     1 MPVPVGAYA-GQPSCFDRMKVGFMIGFSVGMATGGLFGGFNALRYGLRGAELLKNVGKVM 59
             MPV VG Y   QPSCFDR+K+GFM+GF+VGMA G LFG F+ LR+G+RG EL+  VGK M
Sbjct:     1 MPVAVGPYGQSQPSCFDRVKMGFMMGFAVGMAAGALFGTFSCLRFGMRGRELMGGVGKTM 60

Query:    60 VQGGGSFGTFMAIGAGIRC 78
             +Q GG+FGTFMAIG GIRC
Sbjct:    61 MQSGGTFGTFMAIGMGIRC 79




GO:0001302 "replicative cell aging" evidence=ISS
GO:0003674 "molecular_function" evidence=ND
GO:0005739 "mitochondrion" evidence=ISS
GO:0008284 "positive regulation of cell proliferation" evidence=ISS
GO:0034614 "cellular response to reactive oxygen species" evidence=ISS
GO:2000379 "positive regulation of reactive oxygen species metabolic process" evidence=ISS
UNIPROTKB|Q4V7T9 romo1 "Reactive oxygen species modulator 1" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1768 zgc:73345 "zgc:73345" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BRT4 ROMO1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SZV8 ROMO1 "Reactive oxygen species modulator 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P60602 ROMO1 "Reactive oxygen species modulator 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z5I3 ROMO1 "Reactive oxygen species modulator 1" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1914317 Romo1 "reactive oxygen species modulator 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1587111 Romo1 "reactive oxygen species modulator 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A1XQR6 ROMO1 "Reactive oxygen species modulator 1" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q3SZV8ROMO1_BOVINNo assigned EC number0.64551.00.9873yesN/A
A4QNF3ROMO1_XENTRNo assigned EC number0.68351.00.9873yesN/A
Q6NYD1ROMO1_DANRENo assigned EC number0.66251.00.975yesN/A
P60602ROMO1_HUMANNo assigned EC number0.64551.00.9873yesN/A
P60603ROMO1_MOUSENo assigned EC number0.64551.00.9873yesN/A
Q02889MGR2_YEASTNo assigned EC number0.40250.98710.6814yesN/A
A1XQR6ROMO1_PIGNo assigned EC number0.63291.00.9873yesN/A
Q4V7T9ROMO1_XENLANo assigned EC number0.67081.00.9873N/AN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query78
pfam1024767 pfam10247, Romo1, Reactive mitochondrial oxygen sp 4e-17
>gnl|CDD|220650 pfam10247, Romo1, Reactive mitochondrial oxygen species modulator 1 Back     alignment and domain information
 Score = 67.7 bits (166), Expect = 4e-17
 Identities = 37/67 (55%), Positives = 49/67 (73%)

Query: 12 PSCFDRMKVGFMIGFSVGMATGGLFGGFNALRYGLRGAELLKNVGKVMVQGGGSFGTFMA 71
          PSCFD++K+GFM+G +VG A G LFGG+ A RYG+    LL+ +GK M+   G+FG FM 
Sbjct: 1  PSCFDKIKMGFMMGAAVGGAFGFLFGGYAAFRYGMGPRGLLRTLGKSMLGSAGTFGFFMG 60

Query: 72 IGAGIRC 78
          IG+ IRC
Sbjct: 61 IGSVIRC 67


This is a family of small, approximately 100 amino acid, proteins found from yeasts to humans. The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. Members of this family are mitochondrial reactive oxygen species modulator 1 (Romo1) proteins that are responsible for increasing the level of ROS in cells. Increased Romo1 expression can have a number of other effects including: inducing premature senescence of cultured human fibroblasts and increased resistance to 5-fluorouracil. Length = 67

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 78
PF1024767 Romo1: Reactive mitochondrial oxygen species modul 100.0
KOG4096|consensus75 100.0
PF02466128 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: I 96.98
TIGR00980170 3a0801so1tim17 mitochondrial import inner membrane 93.78
TIGR00983149 3a0801s02tim23 mitochondrial import inner membrane 92.07
PTZ00236164 mitochondrial import inner membrane translocase su 91.06
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain Back     alignment and domain information
Probab=100.00  E-value=4.8e-38  Score=198.30  Aligned_cols=67  Identities=57%  Similarity=1.110  Sum_probs=66.7

Q ss_pred             CchHHHHHHhHHhhhhhhhhHHHHHHHHHHHHhcCCcchhhHhhhhHHhhcchhHHHHHhhcccccC
Q psy13979         12 PSCFDRMKVGFMIGFSVGMATGGLFGGFNALRYGLRGAELLKNVGKVMVQGGGSFGTFMAIGAGIRC   78 (78)
Q Consensus        12 ~sc~~kikmG~~MG~~VG~~~G~l~G~~~~~r~g~~g~~~i~~~G~~~l~sg~tFG~FMsiGs~IRC   78 (78)
                      ||||||+|||++||++||+++|+|||+|+++|||+||++++|++|||+++|++|||+||+|||+|||
T Consensus         1 psc~~kikmG~~MG~~VG~~~G~l~G~~~~~r~g~~~~~~~~~lg~~~l~sg~tFG~Fm~iGs~IRc   67 (67)
T PF10247_consen    1 PSCFDKIKMGFMMGGAVGGAFGALFGTFSAFRYGARGRGLMRTLGKYMLGSGATFGFFMSIGSVIRC   67 (67)
T ss_pred             CcHHHHHHHHHHHhhHHHhhhhhhhhhHHHhccCCCCcchHhHHhHHHhcchhHHHHHHhhhccccC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999



An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].

>KOG4096|consensus Back     alignment and domain information
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes [] Back     alignment and domain information
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17 Back     alignment and domain information
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23 Back     alignment and domain information
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00